gi|00000000|ref|CP026569.1|  Salmonella enterica strain MFDS1004839 chromosome, complete 4679649, gc%: 52.18%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1850668..1850679                   attL                                                                                 N/A                 AATAAAGGAGAT
complement(1857185..1858459)       PROPHAGE_Shigel_301: putative P4-type integrase; MFDS1004839_01737; phage(gi24114228)     3.74e-179           SalmonellaentericaMSLTDTKVKNTRPSEKAVKLTDGFGLYLLVHPNGSKYWQLGYRFDGKQKVFSIGVYPAVSLADARQRRDEAKRLLTQGIDPNAKKQADEKVLQEKRDKTRSFRVVAKSWFATKTKWSEDYADTVWKRLETYVFPDIGDRNVSELDTGDLLVPVKKAETLGYLEIAMRIKQYITAILRHAVQQKLMRHNPAYDMEGAVQKPETEHRPALELEEIPLLLERIDAYKGRGLTTLAIKLNLLIFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRQHFVPLCRQALKILKEIRQLTYEEGNEAELIFTGCYDSFKPMSENTINKALRKMGYDTTQDICGHGFRTLACSALIESGLWSEDAVELQMSHKESNSVRAAYTHKAKHLDQRRLMLQWWADFLDENRYEMVRPFEFAQKQ
complement(1858639..1858714)       tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
1859473..1859484                   attL                                                                                 N/A                 AATCGAACCAGC
complement(1859609..1859684)       tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
complement(1859785..1860582)       Protein MtfA; MFDS1004839_01740                                                      N/A                 SalmonellaentericaMIKWPWKAQEITQNEDWPWDDALAIPLLVNLTAQEQARLIALAERFLQQKRLVALQGFELDSLKSARIALIFCLPILELGIEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHSQRVVQSGQSWQQGPIILNWLDIQDSFDASGFNLIIHEVAHKLDMRNGDRASGIPFIPLRDVAGWEHDLHAAMNNIQDEIDLVGESAASIDAYAATDPAECFAVLSEYFFSAPELFAPRFPALWQRFCQFYRQDPSQRLRVSAAEGDYGEESEH
1860671..1860760                   tRNA                                                                                 N/A                 GGAGAGATGCCGGAGCGGCTGAACGGACCGGTCTCGAAAACCGTTGCGGGGGTAACTCCGCCGAGGGTTCGAATCCCTCTCTCTCCGCCA
complement(1860874..1861728)       PHAGE_Salmon_ST64B_NC_004313: Integrase protein; MFDS1004839_01742; phage(gi23505472)     0.0                 SalmonellaentericaMAYEKKVEGRKNRITFTQLWRKFLASADYADLAPRTQKDYLAHEKYILAVFGDAEAKAIKPEHIRRYMDARGQKSRVQANHEHSSMSRVFRWSYQRGYVPGNPCVGVDKFPKPQRDRYITDEEYRAIYNNATPAVRAAMEIAYLCAARVSDVLKMNWNQILEKGIFIQQGKTGVKQIKSWTDRLRDAVEICREWGEEGPVIRTMYGERYSYKGFNEAWRKARKAAGDDLGRPLDCTFHDLKAKGISDYEGTAKDKQKYSGHKTESQVLVYDRKVKMSPTLDRKR
complement(1861865..1862092)       PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01743; phage(gi23505473)     4.11e-51            SalmonellaentericaMSDRFLTEEELEDATGASQKSLQKEVLTLNGIYFIERRDGSIRTTWYHINHPVSRLLPPAGYQPVPGMNFDAIES
complement(1862132..1862701)       PHAGE_Salmon_ST64B_NC_004313: Endodeoxyribonuclease; MFDS1004839_01744; phage(gi23505474)     1.39e-140           SalmonellaentericaMNNLMVDLETMGKKPNAPVVSIGAVFFDPQSGEIGPEFYTAVSLESAMEQGAVPDGDTILWWLRQSPEARAAICADAVSVTTALIEFNDFITCHADDLKYLKVWGNGANFDNVILRGAFERASLPCLWNYRNDHDVRTMVTLGRAIGFDPKRDMPFEGDMHNALADARHQAKYVSAIWQKLIPPTSNNI
complement(1862698..1863561)       PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01745; phage(gi23505475)     1.56e-24            SalmonellaentericaMTTITKEWLQQTIAEFENTRDDIPFGLSDDDAKVLIVLKRALASLEAEPAGYHVIKECGKVGCSVATLEEAEKTRDFWNKKWTIRPYFYTAQPVQETGVYNDVLNIISLLENNEWAEHCTSTVLGSLLESEITRLVGKEQSAPVVTFYRDGVEAAAKWIDQQREAYDSEHGWSDPDTGAFEFGNDAQRGYSSTLEELAEGIRALHPNAGNSPVIPDGWISCSERMPEDEQEVIVHNKLGYRYVSYFDEHSGLFFDMRGGNQMNCIEHIFVTHWMPVPAAPKPEINNE
complement(1863558..1863851)       PHAGE_Klebsi_phiKO2_NC_005857: Gp43; MFDS1004839_01746; phage(gi46402129)            5.44e-46            SalmonellaentericaMWRGLNRGGSQMILTAYEYDPETEKSQSVYLLRHHSKVKKTTLEQKLTVKNDAFGRFKPFVELEDFPEGLSEREAMLKLADWLHRLSVAIEDNWSTP
complement(1863904..1864080)       PHAGE_Escher_Lw1_NC_021344: hypothetical protein; MFDS1004839_01747; phage(gi509141827)     1.41e-27            SalmonellaentericaMCNFHERKVRRTEYYQRFVFGWKLRPCTACNGSGYYDHNGSPKCSSCNGTGKERYKPN
complement(1864123..1864482)       PHAGE_Salmon_SPN1S_NC_016761: eaf; MFDS1004839_01748; phage(gi374531242)             1.74e-76            SalmonellaentericaMSNIDKLNDHELVDLKNAIERELKRRADGPKVTTYYVVSCITDAQHFTDLDCALRCLKSVTENLMEWVTESPENRDYVNQCTGIVGAKLQVKEMNLDHFNMRVAEKYFDDICYPQETAQ
complement(1864479..1864994)       PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01749; phage(gi23505477)     3.68e-122           SalmonellaentericaMSNRIRNAQVFDARTGEYPVDMYIRWIIGGELDFDANYQRGYVWGHEEQQAFLNAVISGFPIGSVALAKAPDWCSRELPYIEVVDGKQRLTTLKKLITNEIPIILADGPLYWRDMTRAEQLAFGRRPLPAVVLDEVTYKDRLAYFMAVNFTGVPQSEEHKRHVMQLMEAAQ
complement(1864991..1865221)       PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01750; phage(gi23505478)     1.32e-49            SalmonellaentericaMKLEMYTLDGSVIVDSNLVTQFYPDYKSGGELTVIETISATGETFTVRVKHSFLQVTSALATAWSVDEKKAEGAAQ
complement(1865292..1865831)       PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01751; phage(gi23505479)     2.57e-129           SalmonellaentericaMSFIQTLSGKQFDYLSATIDDIDIEDIAVALSNICRFSGHLPEFYSVAQHSVLCSQLVSPEFAFEALMHDAAEAYCQDIPAPLKALLPDYREIEKRTDQLIRFKFGLPLEEASVVKYADLTMLATERRDLDIDDSIPWVILEGIPPTDLFEIYPLRPGQAFGLFMARFNELMELRQCAA
complement(1865926..1866843)       PHAGE_Entero_P1_NC_005856: HrdC; MFDS1004839_01752; phage(gi46401690)                5.64e-110           SalmonellaentericaMHNPFFKNMLIYRFSRDFNIDIDSLDKKLELFRFSPCGSQDMAKSGWFSPLVQYSDVLYHAVNNQLLLVIRREEKIIPKQTIADEINKKVSTLEREQGRRLKKTEKDSIRDEVLHSLLPRAFTKNSLVRIWINTAAGFIVVDTSSIKRAEDSLALLRKTLGSLPVVPLTMENPIELTLTEWVRSEAAPSGFSIGDEAVLKAILEDGGTGRFKKQDLACDEILTHIEAGKVVTQISMEWQQRISFTLSCDGILKRIKFADQLISQNDDIDSEDVVQRFDADITLMTGELSNLISDLTAALGGEAKR
1867264..1867275                   attR                                                                                 N/A                 AATCGAACCAGC
1867413..1867664                   hypothetical protein; MFDS1004839_01753                                              N/A                 SalmonellaentericaMSQKDDIPVFPVTGWQAGPLPGYDALVVKFQFLSSPMQPIESAQETQFLVLTPEMAESLASDLQRHIQDLRNSDVHSPQEGKH
complement(1867740..1867925)       PHAGE_Salmon_118970_sal3_NC_031940: recombination endonuclease subunit; MFDS1004839_01754; phage(gi100052)     1.24e-18            SalmonellaentericaMNNYYTCSFCGVSELDAKKLIAKGSKDEPAICSECVVSCVNILINYAAVIKPVKLNVTKGE
complement(1868131..1868826)       PHAGE_Salmon_ST64B_NC_004313: regulatory protein; MFDS1004839_01755; phage(gi23505482)     3.68e-169           SalmonellaentericaMNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLSVDIAELFTSDPKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHAIEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPDKLLVISDNTNYREWSITKDNECRFGVFGKVLISQTQSLKRHN
1868924..1869148                   PHAGE_Salmon_ST64B_NC_004313: DNA binding protein; MFDS1004839_01756; phage(gi23505483)     5.22e-49            SalmonellaentericaMQSPLRKLRKSHGYTLQHVAKGVQVDPATLSRVERCEQAPSTELAERLAQFYAGEISEMQILYPNRYQLSDSAI
1869177..1869731                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; MFDS1004839_01757; phage(gi100118)     1.69e-133           SalmonellaentericaMGHEPEWKVEKQPRWLVAAIKKTISSLHGGYEEAAEWLDVTKDALFNRLRTGGDQIFPIGWALVLQRAGGTYHLAHSVARASGGVFVPLADMEEVDNADINHRLLEAIEQITSYSQQIRVAIEDGVIEPHEKAVIDEELYQAIAKLQQHSTLVYRVFCVPEKGDARECAAPGAVASNFMEKTNA
1869728..1870885                   PHAGE_Salmon_ST64B_NC_004313: putative antirepressor; MFDS1004839_01758; phage(gi23505485)     0.0                 SalmonellaentericaMNSLTVNNRLSQQPGMYEYRPLRHECRLSNSLVVRNHREHSLTVGDESCRNLTAGFGMEGDFMSMSFAGNQKLSALSICARAIRMSVLALCGNSGVILLSVKRQEHIDSAIPGRYTVQAPHKAGAGRGNPEFNIEHNRAHAVFSCHEHCYAQIMVGRAGPVSAGPGSMLTGISTPVRLTTYKVVESLGGEFIEFNIEAATMATVPTLAQPEIRIINGQAVTSSLAVADYFIKRHADVIRKIESLECSTLFRKRNFAFTSISINQPNGGTRKLPCYQITRDGFAFLAMGFTGKRAAQFKEAYIDAFNQMEKQLSTPSVLSDAAHNASVLYSYISSIHQVWLQQLYPMLEKAESPLAVSLHDRINDAAALASLINMTLNRSEVRGRK
1870882..1871106                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; MFDS1004839_01759; phage(gi100121)     1.47e-50            SalmonellaentericaMIRNIFKRFTSQRFHCPRPGQWYSTPEGYVLRISLVDRECQKVVCEPLGRNYRVNMPLIAFRSGKNMKHLGGAA
1871103..1872077                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; MFDS1004839_01760; phage(gi100059)     0.0                 SalmonellaentericaMSSLIQLLDRPIAYNPAFAKLKAGKVKAGPVAAVFLSQLVYWHNRMDGGWMYKTQADIASETALTRDEQETARKRLVALGVLEEARRGVPATMHYRINTARLEALLLETAKPVKKGAQEKTRLRDFQNVETPQSGLVQPRKPDCGDAANKNVETPQTSTGQPNEQACGDPTIFPTGDYTETTQEITQESKTPFCPVAEQPDPEVTLTDQAIEVLTHLNQVSGSRYQKSKTSLENIRARLREGYSVADLQLVIDLKHEHWHENDEQYQYMRPETLFGPKKFESYLQSATRWDQKGRPKRADWGAKKRDVMAFGPVDTTIPEGFRG
1872074..1872547                   PHAGE_Salmon_ST64B_NC_004313: putative transcriptional activator; MFDS1004839_01761; phage(gi23505487)     4.46e-39            SalmonellaentericaMSLLAKVQAFIELNPGLTSNEIADAFPEYARFDVQRSASKLYRCKRVNRRLDGDVFRYYAGKDEAVILTLRQKRSGHTGSGDPMVIAKLVSRAEELESRGLFNRASIVWLEAFSESQFIYEREEFLRRRQKCLNRIKKRIRPVEQVYLAGRFVGNVE
1872544..1873425                   PHAGE_Salmon_118970_sal3_NC_031940: thymidylate synthetase; MFDS1004839_01762; phage(gi100061)     0.0                 SalmonellaentericaMTSESVCIESSDVTISVDESASRTWRRPFLKWAGGKYSMLPDLYQVIPAGMRLIEPFVGGGSVFLNSDKHACFLLADVNTDLINLYQMLAVVPGAVIRHARVMFDRLNDAESYMALREEFNAQVMDAPERAAAFLFLNRHCFNGLIRYNRNNQFNVGWGKYPSPYFPEEEIRAFTEMAHNCVFMAAGFRRTLALAGEGDVVYCDPPYEPMPGKDGFTHYAAGGFTWDDHIALAECCVAAHQRGARVVIGNSTSPRVIDLYSQHGFEIRYISARRSISSKGSTREKAKDLVAIL
1873434..1873823                   PHAGE_Salmon_ST64B_NC_004313: holiday-junction resolvase; MFDS1004839_01763; phage(gi23505489)     1.03e-83            SalmonellaentericaMKLTLPFPPSVNTYWRAPNKGPLKGRHMVSASGRKYQSEACAAVIEQLRRLPKPSTAPAAVEITLYPPDKRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVFPKGKVEITITKFETGAGAAA
1873840..1874700                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01764; phage(gi23505490)     0.0                 SalmonellaentericaMNNLMVIDGIEVRRDVHGRYCLNDLHRAAGGEQKYRPKYWLDNKQTRELIEQLFTEGGIPPSEQNQSVSFFQGGSDTRSLARAPVNTVRGGAEQGTYVCKELVFAYAMWISPSFHLKVIRTFDRITSAPQISSGMAADKMQAGVILLGFMRKELNLSNSSVLGACQKLQEAVGLPNLAPQYAIDAPAGAPDGSSRPTLALSALLKQHGIRMTANQAYQQLAKLGVVEHRERYSRSAINGIKKFWSLTAKGCMFGKNITSPANPRETQPHFFESKFPELLKLLDTVH
1874708..1875697                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; MFDS1004839_01765; phage(gi100127)     0.0                 SalmonellaentericaMRALLTPEIAPRMGVVLFRPGSELMPLFMQGRVLLEPEPEQYSSFACGAVPAVSQPLADDPAVRDVFRNESVIYRAGGLDSLESWLLRGNGCQWPHSVWHSEQMTTMRHAPGAIRLCWHCDNLLREQFTERLESIAVENTTKWVLSVVCRDLGFDDMHAVTLPELCWWMVRNDLAEVLPESAARKALRMPKAIVQSATRESEIVPSVPATSIVQDKAKKVLALRVDPESPESFMLRPKRRRWINERYTRWVKSQPCACCGKQADDPHHLTGHGQGGMGTKAHDLFVLPLCRTHHNELHADTVAFEEKYGSQLELIFRFIDRALAIGVLA
1875711..1876463                   PHAGE_Entero_SfV_NC_003444: antitermination protein Q; MFDS1004839_01766; phage(gi19549033)     2.02e-177           SalmonellaentericaMNLEALPKYYSPKSPKLSDDAPATTSESLTITDVMAAQGMVQSKAPLGFALFLAKVGIQNPDFAIEGLIHYAVALDNPTLNKLSEETRLQIVPYLVNFAFADYSRSAASKARCEHCAGTGFHHVLREVVKHSRNGEPVIKEEWEKELCQHCHGKGEVSTVCRGCKGKGIVLDEKRTRFHGAPVYKICGRCNGNRFSRLPTTLARHHVQKLVPDLTDYQWYKGYADVIDKLVTKCWQEEAYAEAQLRKVTR
1876513..1877586                   PHAGE_Shigel_SfII_NC_021857: hypothetical protein; MFDS1004839_01767; phage(gi526244684)     2.75e-05            SalmonellaentericaMDKILPTMGFVCLSLISLKNPPPSGFFICDHFIFCLAKLLYGQELKLSGDIVLSNNERWVSFFDFAFTPTHAAAPSIPIEDILKKLKVLVSSGSAVKLYNHRSRALRISEMKYSIGDSQATLLIQLCDKNGSDPVFGELTTGNLRVEPKLAGEGIAVSCHIVISTDVVKNTADHHKTLVESVPGISKSVLEPFLNAMLREAFAGCEFKNPATKGMCQHRPKLEIYSHGSQTLMDALKGAKIHNVKLVSTRRKGGLDQTAYTELSERSVKYKIIRQPPLKDKERLLEILRKKGQQSGYTKVSISYSKDGKQASLDLDRNEDAATKLFTKSERVILGNLINQCESTVHLQLETKMIGLL
1877599..1878171                   PHAGE_Shigel_SfII_NC_021857: hypothetical protein; MFDS1004839_01768; phage(gi526244683)     1.53e-12            SalmonellaentericaMKLFSPLSYLRIKHEEKDWYDYKIPAAVSLIVTIVYYFHASKISLIETNGLLLQVNGLLQVLIGFYIAALAAVSTFSSSSIDEVMAGVPPTLVEKFRGQKLTVELTRRRFVCYLFGYLALVSFMLFCLGMISILIGKPFHLWLLTFCSPDAILWLKTVFVGVYIFILMNIITTTLLGLYFLAVRFHQSSL
1878260..1878649                   PHAGE_Entero_mEp390_NC_019721: putative holin; MFDS1004839_01769; phage(gi428782712)     5.01e-56            SalmonellaentericaMSEPVSSATVLAGGLMGASVFGLATGTDYGVVFGAFAGAVFYVATATNIGRIRLVAYFITSFIVGVLGAGLIGTKLAAITHYEKPLDALGAVIISAMCIKFLTFLNSQDLNTLFSILSRIRGGGSDGSK
1878636..1878917                   PHAGE_Entero_mEp390_NC_019721: putative holin; MFDS1004839_01770; phage(gi428782713)     4.91e-49            SalmonellaentericaMVANDPSAALNAVICGVIVIVLMFYRRGDATHRPLISLLAYVMVLVYASVPFRFVFGLYESSHWLVVMVNILICAAVLWARGNVARLVDALRH
1878917..1879534                   PHAGE_Salmon_ST64B_NC_004313: lytic enzyme (putative glycohydrolase); MFDS1004839_01771; phage(gi23505496)     5.44e-121           SalmonellaentericaMNQQQFQQAAGISAGLSARWFPHIDAAMKEFGITAVNDQAMFIAQTGHESAGFTVLKESFNYSVEALKKTFGKRLTPYQCEMLGRIDGRQVAHQPQIANLVYGGRMGNKDAGDGWKYRGRGLLQITGRENYVKCGAALKLDLISTPELLAQEKHAARSAAWFFTLRGCLMYSGDVVRVTQIINGGQNGLADRNSRYNKARAALLV
1879754..1880008                   Putative lipoprotein RzoQ; MFDS1004839_01772                                         N/A                 SalmonellaentericaMHKHKPLNLLPLLLACLPLLASCVPKQQSLPPAWTPQSTPQILPLPSEAKQPEPTPQCSPTCSDALQKKLDIMLSDLTKATAQE
1880094..1880444                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01773; phage(gi23505500)     2.01e-78            SalmonellaentericaMPPRTPKSCRVRGCRSTTTDPSGYCESHRSEGWKQYKPGQSRHQRGYGSKWDVIRERILKRDKGLCQLCLRAGVVREAKTVDHIIPKAHGGTDADSNLQSLCWPCHKAKTARERLK
1880591..1881028                   PHAGE_Klebsi_phiKO2_NC_005857: putative small terminase subunit; MFDS1004839_01774; phage(gi46402087)     4.72e-33            SalmonellaentericaMGAVVRSSGGGRKRNLPSGQKSKLTRIAPPEELMSDIAIRIWKTQSKILIERGVFDLEDAPLLLAYCNAFHLMIEAEKVIAEEGLTVSSEMGGEKKHPAVNVRNDSVSQLARLGSLLGLDPLSRIRMTSGKNDPDDEGNEFDEFD
1881028..1882758                   PHAGE_Entero_phiP27_NC_003356: putative terminase; MFDS1004839_01775; phage(gi18249900)     0.0                 SalmonellaentericaMATYPNVNAANQYARDVVNGKILACRLTMLACQRHLDDLERAKDPHWPYRFDKNKAERFLRFSQKMPHTSGEWARRKLRIEFEPWQKFALGVPFGWVRKDTGFRRFTEIYIEVPRKNGKSAIAAAVGNYMFCADGEYAAEVYCGATTEKQAWKVFAPALAMVKKLPALRQKFCIKPWAKKMTRPDGSLFAPIIGDPGDGDSPSCAIIDEYHEHDTDALYTTMTTGMGAREQPITLIITTAGFDIASPCYEKRTQVVEILERIREGGENEAIFGIIYTLDDDDDWTQPEALIKANPNYNISVKEGFLKAKQLLAMSTPGQTNKILTKHFNKWVSSKAAYYNLQKWMTAADKTLRLSDFAGEECYPGIDLASKLDLNAVVPVFRREIDGLSHYYCVSPMFWVPEDTVYATDPALKTIADRYQSFVNQGVLVPSDGAEVDYRLILEAILKLRETVKIAASPIDPYGATGLSHMLQDEGLEPVTITQNYTNMSDPMREIEAAIAAGRFHHDGNPLMTWCISNVVGKYLPGSDDVVRPVKEGAGNKIDGAVGLMMGVGRAMLNEPKDFLSNLDPDEELLFL
1882755..1882913                   hypothetical protein; MFDS1004839_01776                                              N/A                 SalmonellaentericaMKSLIIDVAGVAGFGALVGGIYLKFGAAVALMAGGSGLLLWALLAARRIKTC
1882907..1884124                   PHAGE_Entero_SfV_NC_003444: portal protein; MFDS1004839_01777; phage(gi19548993)     0.0                 SalmonellaentericaMLIDAIFRSNSLENPAVPVTVEAVENDGIFNGDVIVNPRTAMKLAAVYACIYVISSNVAQMPLHVMRRTGKKVETARDHPAFYLVHDEPNSWQTSYKWRELKQRHILGWGNGYTRVLRHRRTGEVTGLEACMPWETTLLNTGGRYTYGVYNEEGSFAINPDDMIHVRALGNDQKMGLSPVLQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKGELNDGSWKRLKEMWQKATAMLRSQENRTMLLPAELDYKALTVSPVDAQLIDMMKLNRSMIAGIFNVPAHMINDLEKATFSNISEQAIQFVRYTMMPWVTNWEQELNRRLFTRAEREAGYYVRFNLAGLLRGTAKERAEFYHFAITDGWMSRNEARAFEDMNPKDGLDEMLVSVNASRPAKSTTQENTQDE
1884117..1884719                   PHAGE_Entero_SfV_NC_003444: capsid protease; MFDS1004839_01778; phage(gi19548994)     1.05e-132           SalmonellaentericaMSEREIRCYSGEVRAETHDSEPSRIIGYGSVFDSRSELIFGSFREIIRPGAFDEVLNDDVRALFNHDPNFILGRRSAGTLALTVDERGLRYDITAPETQTIRDLVLAPMQRGDINQSSFAFRVARDGEEWYQDEDGVVIREITRFSRLLDVSPVTYPAYQEADSAVRSMKAWQEARDSSALQKAINQRMARERVLTLLNA
1884729..1885958                   PHAGE_Entero_SfV_NC_003444: capsid; MFDS1004839_01779; phage(gi19548995)             0.0                 SalmonellaentericaMKLHELKQKRNTIATDMRALNEKIGDNPWTDEQRTEWNKAKSELEALDERIAREEELRRQDQTYVDENEEEQRNNQDPDKDPQQDEKRGQIFDKWMRHGASELSSEERKALRELRAQGVAPDEKGGYTVPDTFLAKVVEQMKSYGGIASVAQILATSDGRTMEWATADGTAEVGVLLGENEEAGEEDTEFGMDSLGALKMTSKIIRVSNELLQDSAIDMEAYLARRIAERIGRGEARYLIQGTGTGTPKQPKGLKASVTGTTQTAAAGAVKWQEILALKHSIDPAYRRGPKFRLAFNDNTLKLISEMEDGQGRPLWLPDIVGVAPASVLNVPYVIDQEIDDIGAGKKFMFCGDFDRFIIRRVRYMILKRLVERYAEFDQTGFLAFHRFDCILEDTSAIKALVGKGSASS
1886038..1886361                   PHAGE_Entero_SfV_NC_003444: hypothetical protein; MFDS1004839_01780; phage(gi19548996)     1.55e-48            SalmonellaentericaMLLSPEEIKLQLRLDEDYADEDKFLELLGRAVQARTENFLNRRLYTAEAGVPADDPEGLILSDDIRMGMLLLVTHFYENRSTVTEVEKVELPMSFNWLVGPYRYIPL
1886358..1886762                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01781; phage(gi23505454)     1.20e-91            SalmonellaentericaMKLRQAQASATYLLPDPGELDQRIVIRRRVDVPADDFGVTPTYPEQIRAWAKKAQPGAAAYQGAVQIENRVTHYFTIRFRRGITADHEVLHDDISYRVKRVRDLNSKRRFLLLECEELGTDNGSDYAAESIFTR
1886734..1887246                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01782; phage(gi23505455)     3.03e-112           SalmonellaentericaMPQKAYLHVDFEQPETLVFNRARMRRAFVSIGQVHMRDARRLVMKRGRSGPGDNPSYRTGKLARSIGYYVPRASSRRPGLMVKIAPNQKNGEGNRPISGAFYPAFLFYGVRRGAKRKKGHHRGASGGSGWRVAPRNNYMTEVLDKRRSWTRYVLSRELRKSLRPQRRKKK
1887243..1887803                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01783; phage(gi23505456)     5.62e-135           SalmonellaentericaMKLTPIIAALRSRCPRFENRVGGAAQFKAIPEAGKLRLPAAYVVPAEDVTGEQKSQTDYWQDLTEGFSVIVVLSNERDEKGQWASYDAVHDVRQEIWKALLGWEPDPQAHEIQYAGGMLLDLNRHELYYQFDFTVKYEITETDTRQQDDLDGLPDLKTLSIDVDFIEPGTGPDGDIEHHTEITFQE
1887807..1887971                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01784; phage(gi23505457)     1.90e-32            SalmonellaentericaMFVKPAKGRSVPDPARGDLLPEGGRNVDENNYWLRREAAGDVRRTNKKVKTNGD
1887961..1889457                   PHAGE_Salmon_ST64B_NC_004313: Tail Sheath protein; MFDS1004839_01785; phage(gi23505458)     0.0                 SalmonellaentericaMAISFNSIPSDTRVPLFYAEMDNSAANTARDSGASLLIGHASNDASIAVNSLVLVSSVDYARQICGAGSQLARMVGAYRKTDPFGELYVIAVPESTGAAATVALTVTGEATETGTVNVYTGRTRVQAPVTSGDDAAAVAVSIKDAVNANPDLPFTATSEAGVVTLTARHKGLYGNEIPVTLNYYGFGGGEVLPAGVNITVASGVKGAGAPALNDAVAAMGDEPFDYIGLPFNDTASVNTMATEMNDSSGRWSYIRQLYGHVYTAKTGTLSELVAAGDQFNLQHITLAGYEKDTQTPADELAASRTARAAVFIRNDPARPTQTGELVDMLPAPKGKRFTTTEQQTLLSHGVATAYVESGVLRIQRDITTYRKNAYGVADNSYLDSETLHTSAYVLRRLKSVITSKYGRHKLANDGTRFGPGQAIVTPAVIRGELGSTYRQLEREGIVENFDLFQQHLIVERNANDSNRLDVLFPPDYVNQLRVFAVLNQFRLQYSEEAA
1889457..1889813                   PHAGE_Salmon_ST64B_NC_004313: Tail tube protein; MFDS1004839_01786; phage(gi23505459)     2.31e-83            SalmonellaentericaMGKIAGTTYFKIDGQQLSVTGGIEVPMNTKVRDDVIGLDGSVDYKETSRAPYTKVTAKVPKNFPVDKITSSDVMTITSELANGQVYVLSNAWLHGEANHNPEEGTVDLEFHGEEGFYQ
1889810..1890136                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01787; phage(gi23505501)     2.05e-73            SalmonellaentericaMIKELVLKKPIMAHNEKLHVLELREPSYDEIEAIGFPFTVSGDGGVRLDSSVALKYIPVLAGIPRSSAAQLAKLDIFKACMLILNFFTRSETEEDSESGSTTPHTSGE
1890221..1892149                   PHAGE_Salmon_ST64B_NC_004313: tail protein; MFDS1004839_01788; phage(gi23505460)     0.0                 SalmonellaentericaMADSFQLKAIITAVDQLSGPLKGMQRELKGFQKEMAGLAIGAAAAGTAVLGALALPVNAAIGFESKMADIRKVVDGLDDKKAFAQMSDDILTLSTQLPMAAEGIAEIVAAGGQAGIARGDLMQFANDAVKMGVAFDTTAEESGQMMAQWRTAFRLTQEDVVVLADKINYLGNTGPANAKKISDIVTRIGPLGGVAGVASGEIAAMGATIAGMGVESEIASTGIKNFMLSLTAGNSATKAQKQAMAFLKLNPRKLAEDMQKDSRGAMLKVLDSLAKVPKAKQAAVMNALFGKESLSAIAPLLTNLDLLRTNFDRVADAQEYGGSMQKEYASRASTTENQLVLLKNSVNAISVTLGDTFLPAINEAAEAVMPYLEQLRTFVRANPELVQSAAKFGAALLAVGVSIGSLSRAVKILNSVINLSPAKVAIAALVAGAMLIIENWDDVAPVIKAVWQEVDNVAQEMGGWETVIEGVGLVMAGSFTVRTIGALQQSVLLAGRLSGLLGKIGRMGAMTLTIGVAVSLFKELKDLEQGAKDAGMDAGAFAVQKLQTKERERGYNGFIPRLKELLGMDTPIPQGRYQPYVPLTRRSGVLGRAVPPSTQRSELKVTFENAPQGMRVTDIPKSGNPLMNISHDVGYSPFRTSR
1892183..1893523                   PHAGE_Salmon_ST64B_NC_004313: tail/DNA circulation protein; MFDS1004839_01789; phage(gi23505461)     0.0                 SalmonellaentericaMAFFSSTGWRGRLRDASFRGVPFSVEDDESTFGRRVQVHEYPNRDKPWTEDLGRATRRLTINAYLVGDDYADRRDRLIGAIETAGPGTLVHPQYGEMQGSIDGQVRITHSSTEGRMCRVSFQFVESGELSFPVAGMATAKRLETSGGLFDDAIDSMFSTFSLSGISDFIQNDVIADAASMLGDVADAFRMVDSGVSAAMRLLQGDLSVILMPPGAASDFVNALQKAWRSGDRLRGSTSDLVTMIKTMSGITLDPGLSPRGTWPTDSGSAAKQKMQRNMIAAAIRTTAISTAVHAVTTLKQPRDVPDVRGVNQPAGTGRDSDIITVMHPALDGVQTVSNGSFPPNYEDLKAIRTALNAAIDQEQLRIRDDVLFQQISVMRTDLNRDISARLAQVERTALRTPDDVLPALVLAAAWYDDAGRESDILTRNPVPHPGFIPVEPLRVPVR
1893520..1894578                   PHAGE_Salmon_ST64B_NC_004313: Tail protein; MFDS1004839_01790; phage(gi23505462)     0.0                 SalmonellaentericaMNNTVFLRVNGRDWGGWTSVRISAGIDRIARDFNVSITRQWPGGEDVPPVKNGDAVEVLIGDDLVITGWVEALPLRYDAQTIMTGIVGRSKTADLIDCSASPAQHNGKNLFLIASALARPFGVDVVDAGAPAAAVIEAQPEHGETVVDCLNRLLGQAQALAYDDERGRLVLGRPGSMKAATALVLGENILSCDTERSVRERFSSYLVTGQRPGTDDDFGEATIAAIRQSTGDAGVTRYRPHTIQQSGTATTDSCKSRCEFEARQRAAKTLETTYTVQGWRQGNGELWKPNQAVVVYDPLNGFDNETLVIAEVTYSQDNNGTLTEIRVGPADAYLPEPFRPKAKKKVSEEADF
1894578..1895111                   PHAGE_Salmon_ST64B_NC_004313: putative base plate assembly protein; MFDS1004839_01791; phage(gi23505463)     3.75e-128           SalmonellaentericaMANHPLQNMITRAVITAIDTVRKCQTAGLKLIAGEKKENVEHLEPYGFTSAAQNGAEAVVLFPGGGRSHGVAVVVADRRFRLKGLARGEVALYDDQGQSVTLTRAGIVVNGGGKPVIFTNATKARFEMPIESTGDIRDNCDSSGKTMAEMRTTYNGHTHKENGDGGGITDKPGQPMS
1895116..1895529                   PHAGE_Salmon_ST64B_NC_004313: putative tail protein; MFDS1004839_01792; phage(gi23505464)     3.87e-96            SalmonellaentericaMILYVNGIRKDATASLDFLTRAVVISLFTWRRAERDDRTPQPYGWWGDTWPAVQNDRIGSRLYLLKRRKLTNKTPQDAREYMQQALAWMTDDGVAARIDVTSERTGTDTLAAGVTIYQRDGVIHNITFDDIWSKLNG
1895522..1896601                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; MFDS1004839_01793; phage(gi100096)     0.0                 SalmonellaentericaMADSQFARPELPQLIATIRSDLLTRFQQDVVLRRMDAEVYSRVQAAAVHTLYGYIDYLARNMLPDMCDEDWLYRHARIKRCPRKNAVSAKGFARWDGIAGTPEIPAGTQIQRDDQVTFTTLQTVKASGGLLRVPVIGDVAGTAGNTDDGTALRLGTPITGIPSTGYADTLTGGADTEEPETWRARVMERYYWIPQGGADPDYVIWAKEIAGITRAWTFRHYKGTGTVGVMVATSNPVNPAPGDDLVKAVRDHILPLAPVAGGGLFVFAATEKSIPVTVALAKDTPEIRTAIIAELNALMLRDGAPSGKIYVSRISEAISLATGEVAHQLRVPAADVVLGKTELPVLGNITWATYTGENG
1896604..1897191                   PHAGE_Salmon_ST64B_NC_004313: putative tail protein; MFDS1004839_01794; phage(gi23505467)     7.68e-145           SalmonellaentericaMALQDEYTQLLYHLLPEGPAWDGENPLIEGLAPSLNRVHQRADELMAEIDPARTTELIDRYEQLYGLPDSCAPEGVQTLQQRQQRLDAKANVAGGINERFYREQLDALGYTAATIEQFQNLDSTPDPEWGEFWRYYWRVNIPADANISWQTCTSTCDSAIRTWGDTVAECVIDKLCPSHTVVVFAYPEGKENAQN
1897178..1898740                   PHAGE_Salmon_ST64B_NC_004313: tail protein; MFDS1004839_01795; phage(gi23505468)     0.0                 SalmonellaentericaMHRIDTPTAQKDKFGQGKNGFTNGDPATGRRATDLNSDMWDAVQEEVCTVIEAAGIPLSKGEHTQLHAAIGRLIDEQVKTRLEKNQNGADIPNKPLFLQNVGLGETINLAAGALQKSQNGGDIPDKKQFARTIGAVTSTTITLGESGWFKIATVVMPQATSTAVIKLYGGAGFNAGSPEQAAISELVLRAGNGSPVGITATLWRRSPSAANEVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLHSTPEYSSVQPGNSTSGQTYTLFNSLMKPTAGDVEALSVNGGRLNGPLGIGTDNALGGNSIVFGDNDTGFKWHSDGVLGIYANNALVGYIDNSGLHMSVDVLTNGAVRAGNAKKLSLTSNNNSTMTATFNLWGDANRPTVIELDDDQGWHLYSQRNPDGSIVFTVNGDITANTLRASGAIYQNNGDIFGSLWGNGWLSTWINNNLVLDVQLGAGTSVTTWNNAGSWPNTPGYVVTSVWKDYQGENIDGINYAPLQKRVGSQWYTVQGGTV
1898740..1899309                   PHAGE_Salmon_ST64B_NC_004313: Probable tail fiber assembly protein; MFDS1004839_01796; phage(gi23505469)     1.45e-138           SalmonellaentericaMKKYQNIKNFRLIDAPVNRDKTQAEINIGAYFLESDDGQDWYECQSLFSDDTAKIMYDHEGVIWGVVNKPVPQRGNTYSVSMLWPVNMSVAEIDAADCPDDCRGDGTWLYQDGKVVQRGYSPEELRKKAEAEKVRRLAEAESAIAPLARAVKLKIATDEEIKRLEAWELYSVMVNRVDTSAPDWPDIPR
1899444..1899593                   PHAGE_Entero_PsP3_NC_005340: major tail sheath protein; MFDS1004839_01797; phage(gi41057373)     1.72e-09            SalmonellaentericaMSDFHHGTQVIQFNGGTRVTSTISIEIVSMVFTFSFAETLLAFISYVCK
complement(1899594..1900601)       PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; MFDS1004839_01798; phage(gi23505470)     0.0                 SalmonellaentericaMFSRVRGFLSCQNYSHTATPAITLPSSGSANFAGVEYPLLPLDQHTPLLFQWFERNPSRFGENQIPIINTQQNPYLNNIINAAIIEKERTIGVLVDGNFSAGQKKALAKLEKQYENIKVIYNSDLDYSMYDKKLSDIYLENIAKIEAQPANVRDEYLLGEIKKSLNEVLKNNPEESLVSSHDKRLGHVRFDFYRNLFLLKGSNAFLEAGKHGCHHLQPGGGCIYLDADMLLTGKLGTLYLPDGIAVHVSRKGNSMSLENGIIAVNRSEHPALKKGLEIMHSKPYGDPYIDGVCGGLRHYFNCSIRHNYEEFCNFIEFKHEHIFMDTSSLTISSWR
1901151..1901162                   attR                                                                                 N/A                 AATAAAGGAGAT
1902378..1903196                   hypothetical protein; MFDS1004839_01799                                              N/A                 SalmonellaentericaMQLPEQDEFSDFFAANDDEQASLRRKFFLEKHKEPCLSESALEDYQALFMSIYGINIDWKEGTFSLLEALSDNQGGKPVTVKFDYDSEIETATINLVDTQYVFHHYPMGSDGFDTELVRIEHILANSGYSLRVYQNSTFSDTLSFLLIPSDEWKRVEQHYSPEHISEYFVPYGKQLVIPEVTAPVVNYVPSVKQEASNVPALFNARGIRICFLSIMLIAFAIYILWNILTKIEPLSSGQPAGCENLQNLYSKLRPEVAEPLKEKMRKSLGCK
1903370..1904680                   PROPHAGE_Shewan_MR-1: IS110 family transposase; MFDS1004839_01800; phage(gi24375433)     4.16e-74            SalmonellaentericaMTLINFVAANQKYYAFNLLSVFIMVFWSVQYLLQHLLVQTQVSHQLLQPLILILQLPQTPQFRHARPGKFFLPVNGMDYFLPLRLTVRNVLTRRITMNIVFLGIDLAKNVFQLCGLNQAGKPVYTKRTGRKELLQTLANIPACLIGIEASTGAFYWQREFEKLGHKVKVISPQYVRPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQRIVNHRTATVCQIRGLLLDRGIPIGSAVSRARRAIPLILEDAENGLSSRMRRTIAELYDLFNDLGRRIHFFDKEIETVFRQSEACPRIAKVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVRVATNNNDGHMNQWVNQLKERRGFNKTTVAVANKNARIIWSMLRNDTGYQVVCN

#### region 2 ####
2435919..2435930                   attL                                                                                 N/A                 GTTTCCGTCGCC
complement(2437018..2437356)       PHAGE_Acinet_ZZ1_NC_018087: putative quaternary ammonium compound-resistance protein qacE; MFDS1004839_02325; phage(gi392973036)     3.10e-13            SalmonellaentericaMTKEAVIFLFIAIVVEVIATISLKLSDSFTRLVPSLVTIIGYCIAFWCLTIPMRTIPAGIIYAIWSGVGIVLIGLIGWLFLGQKLDMPAIIGMLLIICGVIVINLFSKSVSH
complement(2437996..2438178)       hypothetical protein; MFDS1004839_02326                                              N/A                 SalmonellaentericaMPRMAAKWALVAILVPFLLVGCASLDKARQIFEAAGQSRSERLLGLKSKSPVVADNWGFL
complement(2438202..2438747)       PHAGE_Erwini_vB_EamP_S6_NC_019514: endolysin; MFDS1004839_02327; phage(gi422935930)     1.04e-86            SalmonellaentericaMKPKDEIFDEILGKEGGYVNHPDDKGGPTKWGITEKVARAHGYRGDMRNLTRGQALEILETDYWYGPRFDRVAKASPDVAAELCDTGVNMGPSVAAKMLQRWLNVFNQGGRLYPDMDTDGRIGPRTLNALRVYLEKRGKDGERVLLVALNCTQGERYLELAEKREADESFVYGWMKERVLI
complement(2438744..2439025)       PHAGE_Entero_phiP27_NC_003356: putative holin; MFDS1004839_02328; phage(gi18249893)     2.47e-24            SalmonellaentericaMESNLTGTLNAGLCLVTVLALFLYRRNGARYKPGIAWLSYLLMLGYALVPFRFLAGHYPSSSWPVVLMNALFCGLVLWARGNVSKILSLLRLR
complement(2439125..2439520)       PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; MFDS1004839_02329; phage(gi100118)     1.12e-62            SalmonellaentericaMLGIFRKKTRKAIVEVKKMENRDAVEATVWGAYSIAYADGTCDAKEIAVLEKTIAALPAFAPFSGEIAQMSANIRARYEASPRSANAQALRELADVAGTAEAVDVLCLYWPRSCPALLTTTVNRWMRCVQW
complement(2441691..2442227)       PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; MFDS1004839_02330; phage(gi100055)     6.94e-07            SalmonellaentericaMIYPTNTGKSGEHLRLSTLESVWIQGKLRMWGRWSYIGGGKTGNMFNQLLASKKLTKTAINDALRRMKKAGLEKPELEVFLREMINGKQKSWLAHCTDTEALIIDRVVGEVLTDHPGLLGILNQRYVGRGMSKRRMAELLNEQYPEWALITCRRRVEQWLSIAEFILYSPMRKAFDYA
complement(2442224..2442514)       PHAGE_Shigel_Stx_NC_029120: hypothetical protein; MFDS1004839_02331; phage(gi985761275)     1.41e-30            SalmonellaentericaMADLRKAARGLMCTVRIPGHCNHNPETSVLAHYRLAGTCGTATKPNDMQAAIACSSCHDIVDGRVKIDDFTKTEIRLMHAEGVFRTQEIWREKGIL
complement(2442514..2443113)       PHAGE_Entero_mEp237_NC_019704: hypothetical protein; MFDS1004839_02332; phage(gi435439315)     1.47e-71            SalmonellaentericaMAHLQLVKQTSSGLLLPATPESEDFLRSVKIGAWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPIGGAILPQEQELITGFVDFLCESAAQGHSPALSDAAEQYLHKVAVNRTLDVALLKSFDAFREWVTIQAGFYTEHYYPDGSRGRRAKSIAFANMDETEFQQVYKAVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
complement(2443176..2443346)       hypothetical protein; MFDS1004839_02333                                              N/A                 SalmonellaentericaMKKLKDLLELDEDGLYAVRVKNGEISFCTLIPDDHLILSVEAFIDYLIRLGFTVSY
complement(2443637..2443849)       PHAGE_Entero_933W_NC_000924: protein MokW; MFDS1004839_02334; phage(gi9632542)       2.64e-39            SalmonellaentericaMLCTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
2444219..2445151                   hypothetical protein; MFDS1004839_02335                                              N/A                 SalmonellaentericaMHSVNFYSFRVLTHKGSRASKKLNDLGLSNKKTAYELFVDYFTLYKNTPIEFGVSKTKISLEQHTKLHFDNTKKIIYGYIKVGKYGESSEIKDVKLKKVHYRTTAYDVTLKERYILIYLPDNLEEGIIAFHSCDNISARGVLSDSITEYLKKQFQLEARINPLHHKKIPQYILNSELKQIKAQGYKAPEDIADSFGKNKTNIKTDLIIKANDGIFGSFRDLRNKNIGNIIEIIEDKCDAIKVSLQLGSRTVVFNYDTILKKGISAELDDNDLKINPLTGIPDLTALHDTIKNLSNDILEELHCGNKGVII
2445148..2445702                   hypothetical protein; MFDS1004839_02336                                              N/A                 SalmonellaentericaMNKINVLGVIIKHYKTMSDQRGTMLMSDITVHFIVPLSLSFVLCWTYGIMKPAIASVFVNFGAITTALLMSAVIMIYEQKQKTITKISDIIEGNKSRDKLISLNTNKTIYEQLCHNVAYAILTSIVLVIFSVIIYFLPDNAVDLMKWYFRAPAYIVSFLAYTSFFITVITFLMVIKRFSTILDN
complement(2445864..2446193)       PHAGE_Shigel_Stx_NC_029120: LygF; MFDS1004839_02337; phage(gi985761265)              4.59e-22            SalmonellaentericaMNSGLITLTELRRMTGLTIYSTRHYLDKAERCGDVYQAGRRGGIFPSEEAYRAWKKQAKVDADLIWKLPDGEVRRYDRHHNVICRECRKSEYMQRVLAFYRGNFQEVLL
2446466..2446933                   PHAGE_Pseudo_F116_NC_006552: transcriptional regulator; MFDS1004839_02338; phage(gi56692918)     1.71e-10            SalmonellaentericaMRKKREEIAPPEATQRLRAIWDAKKRDLKLTQEIAADLMGFETQSTVSHYLNGKAPLNTDAALKFSVLLRVKPEELRPDLADLMNYVRSSGTYDDNFEGGGWRMVSRQQADLLNLFDILPESEKEKLIDRLKGQNELYKEAFQNMLAAQKRLKNQ
2447166..2447306                   hypothetical protein; MFDS1004839_02339                                              N/A                 SalmonellaentericaMGRNEVIQYLMDSCNVSFSAALQALRDNGWDMFLAQCELQEQYYPG
2447475..2447591                   PHAGE_Entero_vB_EcoP_ACG_C91_NC_019403: hypothetical protein; MFDS1004839_02340; phage(gi414087578)     1.19e-05            SalmonellaentericaMDFDTIMEKAYEEYFESLDEGEEALSFSEFLLALSANG
complement(2447581..2448102)       hypothetical protein; MFDS1004839_02341                                              N/A                 SalmonellaentericaMSETALVIVKFLIGKSVGQFMLTVALFFLIIIFIPRDITELIEARSDLPYAVQIFSFAVAYLIVLILKVTGYFFVSALPLCQRRGRAKRMLKTLNSLSTEQLFLLEPFLKTHSPTFRASWDNPDADALVKAGIVRPAGSCIDGVSVMFKIEPEYESLMLSTWNPCTKRFDISR
2448540..2448761                   PHAGE_Shigel_Stx_NC_029120: Kil protein; MFDS1004839_02342; phage(gi985761255)       1.16e-40            SalmonellaentericaMIAHHFGTDEIPRQCITPGDYVIHDGRTYIASANNIKKRRLYIRDLTTQRCITDCMVKVWLNRNGLPAKAESW
2448846..2449163                   hypothetical protein; MFDS1004839_02343                                              N/A                 SalmonellaentericaMKNVPESVIAELRQLSGKIRTLCIENNMPCVVSYARDCDDESVSRTLVAYTDSETGAYDRSITAAIMLLKMNEAPPENFISLLKLMECKELVTNAFCSMKNESLH
2449191..2449808                   PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; MFDS1004839_02344; phage(gi985761253)     1.22e-47            SalmonellaentericaMSDNKTEYSYYIKVKNESARKRLGFPFAFWWKTESSEAAATARLAVSMLDAGFEPTDFAKPVRVNSPAVNELPPEGSFDTTFCQKYELGGEDGKTFMLIPGTPATDAHDEKTEECADDAGTEESGTDTSDNDECQDCEVSVATLPFPQRVLHIFTYAATDKKYLHHATRAQRRHITVLEMEQENSYIQNLLMVLRKSEQVHAQDE
2449605..2449616                   attR                                                                                 N/A                 GTTTCCGTCGCC
2449801..2450073                   PHAGE_Entero_phiP27_NC_003356: putative integrase; MFDS1004839_02345; phage(gi18249865)     4.37e-32            SalmonellaentericaMSKGKQKPYYSVSSLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQVAMLNARLS
2450125..2451060                   tRNA 2-thiocytidine biosynthesis protein TtcA; MFDS1004839_02346                     N/A                 SalmonellaentericaMQEIQKNTKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMVCLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGVEYKIVEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIVRFAEAKAFPIIPCNLCGSQPNLQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVDGGDLAFDREEIPLQPAGWQPEEDDTALEALRLDVIEVK
complement(2451104..2452477)       PHAGE_Entero_CAjan_NC_028776: helicase-like protein; MFDS1004839_02347; phage(gi971742387)     3.74e-06            SalmonellaentericaMTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFETSAHEKISLLQTLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPSLPLAAEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWKQLQNGKIKGKSCRVRLLK

#### region 3 ####
2662049..2662063                   attL                                                                                 N/A                 GAATACGATTCCTGT
complement(2667163..2667399)       PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; MFDS1004839_02556; phage(gi16765208)     9.15e-47            SalmonellaentericaMNDEAAEAAARLREAEGTKNRLLQITSEKIAPLQDAVDLDEATNKEKASLLAWRKYRVQVNRVDTLKPVWPEKPASSL
complement(2667612..2668298)       PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; MFDS1004839_02557; phage(gi16765208)     1.98e-90            SalmonellaentericaMDGNKSHSYTARAQDIDLGTKTTSSFDYGTKSTNTTGNHTNQFGGYINSYWGDSNHTSFQLGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVVADGNAETFGLMDGGVDAAITAYFGSQLQERVQQNIIREYLGEQPVGTAFVIETGNSKHPWLVHAPTMRVPLIIDGTDAVYNATRAALLAIFQHNKSAGEDRKITSVALPAMGAGCGQVPPDSVARQIVLI
complement(2668619..2669215)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; MFDS1004839_02558; phage(gi169257320)     5.26e-120           SalmonellaentericaMGEVQTKAPLDSLALTGTPTAPMPETTAAGIEIATAAFVAAKVAQLVGSAPEALDTLQELADALGNDPNFAITVLNKLAGKQPLDETLTALSGKSADGFIEYVGLRETINHAADALHKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASRGGLPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEY
complement(2669208..2669582)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, large subunit; MFDS1004839_02559; phage(gi169257299)     3.62e-69            SalmonellaentericaMFRDGSFLQIGWPSITVFSSSDYKRVALTDYDRFPEDIDGEGDGFSLASKRTTTFMSAGMTPAESSPGREITDVKWRRSSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGDWFQSAMENMVGYG
complement(2669602..2669781)       PHAGE_Salmon_Fels_1_NC_010391: bacteriophage terminase, large subunit; MFDS1004839_02560; phage(gi169257185)     6.07e-29            SalmonellaentericaMTGNKYGSAAAVRREVAEYLRPPRRMPVAEGIKQFMFVPRGANTAVPWDDTLASQSFPK
complement(2669768..2670259)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, small subunit; MFDS1004839_02561; phage(gi169257298)     1.78e-36            SalmonellaentericaMDGELKNLKCNICQLAAITGLHRQTVVSRLSGVPLAPGSNEKNKLYLLTDVIRVLMETPVSQAAEHQDPNKMTPKERKNWFDSEKGRFWLEKEMKQVVPLPEVRQQMAAIVKAITQVLEVWSDKLERDKGWSADQLNEAQDVVDEARILLVKAIQETADDDGE
2670567..2670734                   hypothetical protein; MFDS1004839_02562                                              N/A                 SalmonellaentericaMKNIITIIVAIIIVFYAGMWSQKFLMEDECLDSGGSYNENGICNIAGSHQDVPPK
complement(2670991..2671524)       PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; MFDS1004839_02563; phage(gi16765210)     1.15e-123           SalmonellaentericaMNLLSALLKRYWLQLVFILLMAGAFIAGNVWSDRGWQKKWADRDSAESSQEVNAQTAARIIEQGRVIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAKKLATRLDAAKHTANLAAAVRSKTTNADARMLANMLGDIAEEAKHYAGIADERYRAGMTCERVYDSVRESNNYRRH
complement(2671578..2671808)       PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage endolysin; MFDS1004839_02564; phage(gi169257182)     5.24e-38            SalmonellaentericaMNGKKAFAPRSAKIRITGLENYTRCGVALKLDLVANPGQLELERHAARSAAWLFVTKGCLKYSGDLVRVTQIINGG
2671839..2672492                   PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; MFDS1004839_02565; phage(gi169257272)     1.20e-15            SalmonellaentericaMPDNTPTTHEENAARLSQAGKCLRDIEAGRFQCDEEKPQPTGELADEPATPEAVEQDTTEHHPAPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAARGEYVEGISDPNDPKWVHNNYSASNQGEKEEVVQEEKQPAAEPEAVTRNADGTFDVSALFPPPSNQTEKTEARTERDGETPKESNQQETAGDTGQEITTDGGSGTTS
2672552..2673121                   PHAGE_Entero_HK022_NC_002166: integrase; MFDS1004839_02566; phage(gi9634144)         1.88e-47            SalmonellaentericaMSAWIDRYEVLLQRRSLSVNTYKIRSNQLATVREKMGEMILAEVTTRHIAEFLESWIAEGKNTMAGAMRSVLSDMFREAIVEGRITTNPVEPTRAPEIKVARERLQLETYNATRTAAEYLPVWFPLAMDLALVTGQRREDIVNMKFSDIVDGRLHVTQIKTGMKIAFPLSLTLQAPGLRPGRLSIAADW
2673136..2673405                   PHAGE_Entero_HK022_NC_002166: integrase; MFDS1004839_02567; phage(gi9634144)         3.53e-15            SalmonellaentericaMISAGIRKNSPTGNIHPDGLTKKFVKARKISDVKCSDNPPTFHEIRSLLGRLYKDERGEEFAQKLLGHTSENTTKLYLDERDNKAYVML
complement(2673390..2673518)       hypothetical protein; MFDS1004839_02568                                              N/A                 SalmonellaentericaMGYVFPLEIPRNFLEFLYSGLFGYITSKSSLTFLLQQNQSIT
2673532..2673561                   attL                                                                                 N/A                 AAATAAAAAGAGACCGAATACGATTCCTGT
2674869..2675150                   hypothetical protein; MFDS1004839_02569                                              N/A                 SalmonellaentericaMVVFLTFTDSKGISEYILDPWLDARIFKKEESYEIYKNNSSEYINENHCFEAYDKYTAIMNSAEYIDAITKTINLLYRVNLDEIQLTNPFKFI
2675630..2676352                   Guanine nucleotide exchange factor SopE; MFDS1004839_02570                           N/A                 SalmonellaentericaMTKITLFPHNFRIQKQETTPLKEKSTEKNSLAKSILAVKNHFIKLNSKLSERFISHKNTESSATHFHRGSASEGRAVLTNKVVKNFMLQTLHDIDIRGSASKDPAYASQTREAILSAVYSKYKDQYCNLLISKGIDIAPFLKEIGEAAQNAGLPGATKNDVFTPSGAGANPFITPLITSAYSKYPHMFTSQHQKASFNIYAEKIIMTEVVPLFNECAMPTPQQFQQILENIANKYIQNTP
complement(2676554..2676781)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; MFDS1004839_02571; phage(gi169257321)     5.51e-41            SalmonellaentericaMKDEAAEKAAQLRQAEETKSRLLQMASEKIAPLQDAVDLGLATDDEKAQLDEWKKYRVLVNRVDTLNPDWPEKPS
complement(2676903..2677619)       PHAGE_Phage_Gifsy_2_NC_010393: pseudogene; bacteriophage tail fiber C-terminus (Host specificity); Lambda gpJ homolog; MFDS1004839_02572; phage(gi169257318)     2.19e-173           SalmonellaentericaMEDTPDGKISQFLVAADRIAYINPANGNETPGFVMQGDQIIMNEAFLKYLSAPTITSGGNPPAFSLTPDGKLTAKNADISGHINAVSGSFTGEINATSGKFSGVIEAREFVGDICGSKVMQGVSIRATNDERSTSTRYTDSATYQIGKTITVMANCERNGGTGAITVTININGQVKTAEVMPYTAGIPAMYQTVVFSVYTTSPVVDISVSLRVRGQYTTSASVWPLVMVSRSGSNFTN
complement(2677762..2680122)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail fiber (host specificity) protein; Lambda gp J homolog; MFDS1004839_02573; phage(gi169257317)     0.0                 SalmonellaentericaMLINNTPVVDADGNSNIHGVTVVYQVGETPQAPLEGFEASGAETVLGVEVKHDNPVTRTVVSENVDRLRFTFGVQMLQETMDKGDRNPSSVNLLIQFQRSGIWNTEFDITINGKITTQYLASVVADNLPPRPFSVRMVRVTPDSTTDRLQNKTLWSSYTEIIDIRQGYPGTAVAGLLVDAEQFGSQQVTRNYHLRGRIFQVPSNYDPDTRTYTGLWDGAFKPAYTNNPAWCTMDKLTHPRYGLGRRIGGADVDKWALYAIAQYCDQPVPDGFGGTEPRMTLNAYITTQRKAYDVLADFCSVMRCMPVWNGRKMTFIQDRPSDKAWTYTNGNVVGGRFKYSFSALKDRHNAIEVRYTDPLNGWQTSTELVEDHASQARYGRNLLKMDAFGCTSRGQAHRTGLWVMMTELLETQTVDFSVGAEGLRHTPGDIIEVCDNDYAGASVGGRITDLDISTRTLTLDREITLPESGATTLNIVGPDGKPFSTEIQSQPAPDRVVTKVLPETVQPYSIWGLKLPSLKRRLFRCVRIKENDDGTYAITALQHVPEKESIVDNGAHFDPLPGTTNSIIPPAVQHLTVSTDNDSTLYQAKAKWGTPRVVKDVRFVVRLTTGSGNEGDPVRLVTTATTSETEYAFHELPLGDYTLTVRAINGYGQQGEPASVAFSIQAPEAPSTIEMTPGYFQITVTPHQTVYDASVQYEFWYSATQLATAADIQSKAQYLGVGSFWIKDGLKPLHDAWFYVRSVNLAGKSVFAEASGRPGDDAKGYLDFFKGLITETYLGTELLKKN
complement(2680116..2680397)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpK homolog; MFDS1004839_02574; phage(gi169257315)     3.30e-58            SalmonellaentericaMINDDILAHARQCAPAESCGYVVRTAQGERYFPCENLSAEPTMYFRISPEDYLNARNRGDIVALVHSHPDGKPCLSSADRTLQIQSGTVCRAC
complement(2680407..2681102)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tip assembly protein; Lambda gpL homolog; MFDS1004839_02575; phage(gi169257314)     9.41e-173           SalmonellaentericaMQDIPQETLSETTKAEQSAKVDLWEFDLTAIGGERFFFCNEPNEKGEPLTWQGRQYEPYPIQVQDFEMNGKGASPRPNLVVANLFGLVTGMAEDLQSLVGASVVRHQVYSKFLDAVNFSNGNPGADPEQEAVARYNVEQLSELDSSTATIILASPAETDGSVVPGRTMLADSCPWDYRDENCGYDGPPVADEFDKPTSDPKKDKCSHCMKGCEMRNNLVNAGFFASINKLS
2681192..2681725                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; superoxide dismutase precursor; MFDS1004839_02576; phage(gi169257313)     6.02e-125           SalmonellaentericaMKYTILSLVAGALISCSAMAENTLTVKMNDALSSGTGENIGEITVSETPYGLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKPAPLGGGGARFACGVIEK
2681890..2682057                   hypothetical protein; MFDS1004839_02577                                              N/A                 SalmonellaentericaMLIRRINGNIFNRVKLNTCPISKGGFIVRISPVILNMSVCCTNHHVSIQIVVKTV
complement(2682098..2682463)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA packaging protein; terminase, small subunit; MFDS1004839_02578; phage(gi169257298)     2.44e-70            SalmonellaentericaMFDTERHFHRIQEKSTTVDQEIKSLELNITQLSAITGAHRQTIASRLKGVKTSGGNGSNLKIYRLVDILTAMMTMPAVTGENDPNKMKPSDRRAWFQSEMTRIELEKEMRTLIPASEVLSV
complement(2682620..2683120)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; Lambda gpRz homolog; MFDS1004839_02579; phage(gi169257297)     9.14e-115           SalmonellaentericaMMFNWKTMFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANATITDMTKRQRDVAALDEKYTKELADAKAENDALRDDVAAGRRRLYVNATCPAVPTGKSTSTARMDNAASPRLADSAQRDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW
complement(2683117..2683569)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; endolysin; lysozyme; MFDS1004839_02580; phage(gi169257296)     3.75e-107           SalmonellaentericaMMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVDGKPVKPGMMIDEATAERLLNTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTLSSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS
complement(2683553..2683888)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage lysis protein; holin; MFDS1004839_02581; phage(gi169257295)     2.16e-75            SalmonellaentericaMKMNDKTPEFWAAVLTGLKNAWPQILGALMAGLIAYGRLIYDGATRKNKWLEGVLCGALSLCVTSALDVVGLPVSISPFVGGIIGFVGVDKLREIAISALKKRAGVNDENQ
2684371..2684844                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage virulence determinant; GtgA; MFDS1004839_02582; phage(gi169257294)     2.06e-111           SalmonellaentericaMDPDIEIDDDTYDECREVLSRILEDAYTQSGTFRRLMNYAYDQELRDVEQRWLLGAGENFGTTVTDEDLESSEGRKVIALNLDDTDDDSIPEYYESNDGPQQFDTTRSFIHEVVHALTHLQDKEDSNPRGPVVEYTNIILKEMGHTSPPRIAYEFSN
complement(2684851..2684988)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; MFDS1004839_02583; phage(gi100130)     1.60e-06            SalmonellaentericaMSESISGTGLAGGILTGASVYGLLTCISSDLNWLLCCSIVGFCIF
2685205..2685654                   PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; MFDS1004839_02584; phage(gi169257293)     1.10e-105           SalmonellaentericaMKNTALGKFIFIVGTALLLGGCSGMVMPPYATHGTSVGIIAPAGGYSEWHTDSRNHTTGDSHSQSQGNCTQSEDSQLSENSLTRTHQSNCNTRSQTHSSSTSKTRSSSVGFSVGGPVGASIGLIKQMESMNRAPANDMSSNEMFKNFGF
complement(2686028..2686552)       hypothetical protein; MFDS1004839_02585                                              N/A                 SalmonellaentericaMFYRDLFQVFGPDPLYKEEEGIAILREQYGIEAPEQIFKQIYCGLSNNSEFQTLYGHLNLKSLKWDLVRLKTAEFTKFGRNATYPDYMLEISEDFNACGSKFCIDAREEVANHWLKFGTWAEPPMFIERSLIIPGESGLHLMEGHTRLGTLLGAIKYKFVQLADTHELYIASQK
complement(2686649..2687338)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; MFDS1004839_02586; phage(gi169257244)     5.53e-112           SalmonellaentericaMNTQYLEYVRQQLIVATADLSGATKGQLQAWLENAQLYTKNYPRKKQRIRDEVTGKMITLNNPPIAGKQSLAKGSAIPLVQPVEYSTSSWRRALLSLEEHNKAWLLWNYSENTCWEYQVTVTRWAWEKFSQQLEGKRVAKKTLARLRQLIWLAAQDVKAELARRETYEYQTLAELMGVAKSTWTETYMSHWLVMRNSFKRLDSDALISVTRSRSQQKATNLDISLAKPN
complement(2687468..2687695)       PHAGE_Phage_Gifsy_2_NC_010393: NinG; MFDS1004839_02587; phage(gi169257288)           3.59e-12            SalmonellaentericaMKMTWFQHPVCTTEEADELVAGYRRRGVKVERYGEAEVLELESNNTPQRWTVEELKEIRIAALADLRALKKLEAA
complement(2687692..2688291)       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; MFDS1004839_02588; phage(gi169257286)     2.14e-70            SalmonellaentericaMAHLQLVKQTSSGLLLPATPESGDFLRSVKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWMPTGGTVTSREQKLISGFVNFLCDSAGQEYTPALNEAAEQYLHNVATLRTGDVALLKSFDAFREWVTVQAGFYTEHFYPDGSRGRRAKSIAFASMDETEFQQVYKAVLNVLWNWILFRKFSSLEEVENVAAHLLEFA
complement(2688355..2688660)       PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; MFDS1004839_02589; phage(gi423262436)     1.24e-10            SalmonellaentericaMMIINSLLYIHVENEDALKMLKFVIYGDTVKNLNKTFTCKYAVIRRDDMTVIAEMDFFPDCNRSLMYRDGRYVRFLPLLQNDIMGSDTLINELTIRAGYHE
complement(2689292..2691271)       Putative alkyl/aryl-sulfatase YjcS; MFDS1004839_02590                                N/A                 SalmonellaentericaMRLKLIVKSFALAGLLSSTALTPLFAQEAPKGATASTKQANDALYNQLPFSDNTDFTNAHKGFIAGLPEEVIKGEQGNVIWNPQQYAFIKEGEKSPDTVNPSLWRQSQLINISGLFEVTDGVYQIRNLDLSNMTIIEGKEGITVVDPLVSAETAKAGMDLYFKNRGNKPVVAIIYTHSHVDHYGGVRGVVDEADVKSGKVKVYAPAGFMEAAVAENIMAGNVMSRRASYMYGNLLKPDASGQVGAGLGTTTSAGTVTLIAPTNIIDKDGQKEVIDGLTYDFMLAPGSEAPSEMLWFIEEKKLIEAAEDVTHTLHNTYSLRGAKIREPLPWSKYINEAIVRWGDKAEIIMAQHHWPTWGNENVVGLLKSQRDLYRYINDQTLRMANEGLTRDEIAANFKLPDSLAKTWANRGYYGSISHDVKATYVLYLGWFDGNPATLDELPPEEAAKKFVEYMGGADAILQKAKADFDQGNYRWVAQVVSKVVFADPNNQNARNLEADALEQLGYQAESGPWRNFYLTGAQELRNGVVKGPTPNTASPDTVRAMTPEMFFDFLAVHINGEKAGNARAVFNIDLGSDGGKYKLELENGVLNHTANAEAKDADATITLNRDTLNKIILKEETLKQAQDKGEVNVTGNAAKLDEMLGYMDKFEFWFNIVTP
2691938..2693017                   PHAGE_Entero_HK022_NC_002166: integrase; MFDS1004839_02591; phage(gi9634144)         2.82e-93            SalmonellaentericaMSRKKYDANLPRNLTYRKASKSFFWRNPLTDKEFPLGQIARRDAITQAIEANNFIAQNHTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRGNQLATVREKMGEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDKAYMML
2693153..2693182                   attR                                                                                 N/A                 AAATAAAAAGAGACCGAATACGATTCCTGT
2693168..2693182                   attR                                                                                 N/A                 GAATACGATTCCTGT

#### region 4 ####
2897601..2897615                   attL                                                                                 N/A                 GCTACATTTTTATAA
2897858..2898112                   PHAGE_Entero_mEp390_NC_019721: DinI-like family protein; MFDS1004839_02806; phage(gi428782688)     3.90e-34            SalmonellaentericaMTDKTAKAKILYIQTVISETRMFVELVYDKRNVEGLEGASEIILAELTKQVHQIFPDAEVRVKPMQANCLNSDTNKSDRENLNR
2898383..2899069                   hypothetical protein; MFDS1004839_02807                                              N/A                 SalmonellaentericaMLRHIQNSLGSVYRSNTATPQGQIIHHRNFQSQFDTTGNTLYNNCWVCSLNVIKSRDGNNYSALEDITSDNQAFNNILEGIDIIECENLLKEMNVQKIPESSLFTNIKEALQAEVFNSTVEDDFESFISYELQNHGPLMLIRPSLGSECLHAECIVGYDSEVKKVLIYDSMNTSPEWQSNIDVYDKLTLAFNDKYKNEDCSICGLYYDGVYEPKPLHSSSWKDWCTIL
2899112..2899360                   hypothetical protein; MFDS1004839_02808                                              N/A                 SalmonellaentericaMGGRGSEVQILSCRPKFPLKTSLSGLFFLWLNFLRGSYGVKLGNKAVEIRRNLRLIHQFAHCSVSEFINTQIFISNYCINSL
2899429..2900055                   PHAGE_Pseudo_F116_NC_006552: hypothetical protein; MFDS1004839_02809; phage(gi56692976)     3.72e-36            SalmonellaentericaMCGRFAQAQTREEYLAYLADEADRNIAYDPQPIGRYNVAPGTKVLLLSERDEQLHLDPVIWGYAPGWWDKAPLINARVATAASSRMFKPLWQHGRAICFADRWFEWKKEGDKKQPYFIHRKDGKPIFMAAIGSTPFERGDEAEGFLIVTSAADKGLVDIHDRRPLALTPETARVWMRQFLEPHSKSITYRVIPALTRPMMRKDTNPCQ
complement(2900187..2900435)       PHAGE_Stx2_c_1717_NC_011357: transposase; MFDS1004839_02810; phage(gi209447153)      2.73e-30            SalmonellaentericaMEIDNNICENALRCVALGRRNYLFFGSDRSGEAAAIIYSLLGTCKLNGVESEAWLRDVLWKISDWSSNRVHELLPWNLETVK
complement(2900703..2901671)       PHAGE_Phage_Gifsy_2_NC_010393: prophage virulence determinant; secreted effector protein; MFDS1004839_02811; phage(gi169257322)     0.0                 SalmonellaentericaMPFHIGSGCLPAIISNRRIYRIAWSDTPPEMSSWEKMKEFFCSTHQTEALECIWTICHPPAGTTREDVVSRFELLRTLAYDGWEENIHSGLHGENYFCILDEDSQEILSVTLDDVGNYTVNCQGYSETHHLTMATEPGVERTDITYNLTSDIDAAAYLEELKQNPIINNKIMNPVGQCESLMTPVSNFMNKKGFDNIRYRGIFIWDKPTEEIPTNHFAVVGNKEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMATRRKLIYYTDFSNSSIAANAYDALPRELESESMAGKVFVTSPRWFNTFKKQKYSLIGKM
complement(2902149..2902730)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber assembly protein; Lambda gpTfa analog; MFDS1004839_02812; phage(gi169257321)     8.40e-143           SalmonellaentericaMTFKMSEQAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTDIAPPDIPASHIAIFDAETQTWSLHEDHRGEMVYDTTTGNQVYISAPGPLPENVTSVSPGGEYQKWDGKAKVWVKDEAAEKAAQLRQAEETKSRLLQMASEKIAPLQDAVDLGIATDDEKARLDEWKKYRVLVNRMDTAAPDWPERPASQ
complement(2902730..2904439)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage side tail fiber protein; Lambda gpStf (gpN) homolog; MFDS1004839_02813; phage(gi169257320)     0.0                 SalmonellaentericaMIIGFGNNVVSSLAADITASQTTIQVMPGVGAMFANLLTSDYANSSNPLKTYAKITLTDAKETVFEVCHLTAVNNDMLTVIRGQEGTTAKGWSLNDVIANFATRGSENQFVQIEELQSGHYVAGVAGGTENNLTLELPATYFVNGGVDWTLRTPLVVIPALNNTGASTLQLTMGGRVLGIFPLYKGNKAELSANDIIKDIPVLCVLDNTKTYFSVLNPLEIYLGSRYLQKDQNLSDVPDKAKGRSSLEVYSKTESDENYMAKSQCGADIPNKPLFVQNIGALPASGTAVAANRLASRGALPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGYALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHTARAQVTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA
complement(2904436..2905062)       hypothetical protein; MFDS1004839_02814                                              N/A                 SalmonellaentericaMAALLESIIPAYPYTQYNDDPDIVAFFDAYNKLAQGYLDYFNNLNLPCWTSPAITGELLDWIAAGIYGESRPLLQISEDAIARGAYNTIEYNNVAYAKLRNYVPGSASYVPDDYFKRILTWNFYKGDGSHFCINWFKRRLARFIHGANGIDPPVQSTFDISVMPDKGIFFVSIPDYGDGVGHFLKDAIDQSLVKLPFIYTYSVTVVEQ
complement(2905046..2905675)       hypothetical protein; MFDS1004839_02815                                              N/A                 SalmonellaentericaMYGVQGTPDCYRIELKNVYGVQENLISYRQASLGAWVAIAGGGDPYEVAYAIYKAVPDISVLTNDVVNPSGAAVDKKTIPIIVYPDTYHVPFVVPSSQNVTLLITWNTASTSYIDPTGIEKAVQQSIADYINGIATGEPINIFLIRDIFLNQVKGLVSSNLVSMIDIQVGINGKIVPPATDSSLVYGDTYAYFSTSSSQIQVKQYGSSS
2905696..2906106                   PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; MFDS1004839_02816; phage(gi169257271)     1.46e-44            SalmonellaentericaMENTNIVTTEQQAPNTISASNAIFNVQALGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALSRYAPSLPQSMVAAQ
2906141..2906155                   attR                                                                                 N/A                 GCTACATTTTTATAA
2906301..2907503                   PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; MFDS1004839_02817; phage(gi100242)     1.40e-49            SalmonellaentericaMTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGDDLLGIYADAIREQVDAMQHLRLQEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTNDNGKLNIRLTGPWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTALTANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQAHEWFQAHQQISPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASRYQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQLSFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPQVRKAS

#### region 5 ####
3319917..3320771                   PHAGE_Vibrio_Aphrodite1_NC_042100: hypothetical protein; MFDS1004839_03202; phage(gi100055)     1.15e-05            SalmonellaentericaMDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTVTQGEAQLEMPTGDAMTLTPGKVVILPQNSAHRLRQSGEAPTHIVCGSLRLHTTSRYFLTALPEVLCLAPPLHSPASIWLNAAILLLQQESERHLPGADVLYSQQCATLFTLAVRDWLSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVSATTPLAVLTTLRLQIAAQTLSREALPVMVIAESVGYASESSFHKAFVREFGCTPGEYRKRVSALER
3321110..3321439                   Histidine kinase; MFDS1004839_03203                                                  N/A                 SalmonellaentericaMLRRAISNLLSNTMRYTPPGKTITLRIKEADDQIHIIVENPGTPIAPEHLPRLFDRFYHVTPSRQRKGEGRGIGLAIVKSIVTAHQGKVSVTSDTRATRFILTLPKYLR
3321639..3321884                   hypothetical protein; MFDS1004839_03204                                              N/A                 SalmonellaentericaMESRQLSATAHEMMNNGDAFAHQQMAQTQKTSAPATVENATSFSEMDGYEKAMVIHQSMNNAHSFSHEIQAEEHHKQIKRN
3322307..3322669                   PHAGE_Salmon_SPN9CC_NC_017985: bactoprenol-linked glucose translocase; MFDS1004839_03205; phage(gi389060491)     6.61e-83            SalmonellaentericaMLKLFAKYTSIGVLNTLIHWGVFAFCVYGMHTHQALANFSGFVIAVSFSFYANARFTFNASTTTLRYMMYVGFMGTLSAVVGWMADKCSLPPLLTLVTFSAISLICGFIYSKFIVFRDAK
3322666..3323592                   PHAGE_Salmon_SPN9CC_NC_017985: O-antigen conversion protein; MFDS1004839_03206; phage(gi389060490)     0.0                 SalmonellaentericaMKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPLVIPLSFTRNFGKEPALFAGLDHATGDTVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMSREVVENIKQMPERNLFMKGVLSWVGGKTDIVEYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKKRPKYIIKNEKKNG
3323585..3325225                   PHAGE_Salmon_epsilon34_NC_011976: GtrC; putative membrane protein; MFDS1004839_03207; phage(gi221328637)     6.32e-102           SalmonellaentericaMVNNRLKMVIAILIVFSLVYSIGFITPMNSDDYTYALRELSLSSVKMHYLGWSGRVVSDTISTSLLKFFSPHIYNAINSAALTLMVLCWTMIPATLTKSSPSPYVMIFLFFLYFIANPALGQTNFWLVGSANYLWTNMFIAIYILISIYLSNGKKSNLILFVYAISSIFAGCSNENTSLVVVLISVAYFFIMNRNKYLLIGVFGSAIGAGVLLLAPGNLSRASTIQDWYNQPLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISVVLSRNSSSKLMFGSFLFILGAIAANVAFLASPAMPSRALNGALCFMILSISFVAHSAFTKFNKASIYLSVTTYAMAFLYFIPSYILYYSSIKSISKQTEIREEIIDRAKHNKQDQAIIPDYYFPPVLHAGPSLDTFNSEAMSRYYGIDLKITAPGFFDYSRAFNFKPLNINAKICNNVYIKSLWIYKQQMDIKTFVIFEFNKNPADSLDEKTAMFISFKTKDGKIINADVDKKTFQIDGRWLSGRAINDIDSNELESITSGTWDVRTGARTNENITEIIK
complement(3325282..3325440)       PHAGE_Salmon_Marshall_NC_022772: tailspike; MFDS1004839_03208; phage(gi568191873)     1.47e-17            SalmonellaentericaMGFGHMRILACIGQLPESGLMHYGSVGFFFGTDGALRLLAKKPDGAFVTYDM
3325612..3325830                   PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfA; MFDS1004839_03209; phage(gi557307550)      2.93e-26            SalmonellaentericaMSGKRYPEEFKIEAVRQVVERGHSVSSVATHLDITTHSLYARIKKYGSNSSTNKEIKSSQMIRPKSADSRKS
3326007..3326279                   PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; MFDS1004839_03210; phage(gi557307549)      3.09e-42            SalmonellaentericaMSRRGNCHDNAVAESFFQLLKRERIKEKIYGTRDEARSDIFDYIEMFYNSRRRHGSSEQMPPAEYENLYHQRLRSVQVIRGDSQICSPCA
