gi|00000000|ref|CP027114.1|  Gordonia alkanivorans strain YC-RL2 chromosome, complete genome. 4921996, gc%: 67.48%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
2618763..2618791                   attL                                                                                 N/A                 ACTGGTTCGAGTCCAGTTGGGGGAGCAGA
complement(2620320..2620589)       PHAGE_Mycoba_Job42_NC_021538: hypothetical protein; C5O27_11870; phage(gi514051827)     1.98e-32            GordoniaalkanivoransMAKYKTLNDAMAAGDELAEAEIRYRLLAETFTDMPQLRGNMNGQLERVKAEILRLRAAEASAKKKAAPASEGDDTVVSFDAGRFRKSGA
complement(2620826..2621671)       phage major capsid protein; C5O27_11875                                              N/A                 GordoniaalkanivoransMAVETTITSAKAWSPDLTAVPPADAVPDALILETSTVSGTIEGDAPAVRVQYVDDATATFTAEGVTIDEANPGLSEALVHTGKVAQIIRLSREQFAQPNASELLSASVARAVTKAGNTAYIAQAAPTSPAVTPPAGLLNISGIVNGGAVANDLDGLVDLLADLASNGAEPSHIVLSPTAWASLRKFKTAADYNTSLLGTGATDAQKFLLDLPVLVTPAAPSGSGLVIDKTAVVSAVGNVEVSISEHAYFAADSIAVRCIWRFGANIVKPNRIGKFTVTAPE
complement(2621815..2622291)       hypothetical protein; C5O27_11880                                                    N/A                 GordoniaalkanivoransMHDNTSEPEQPAVAPEDSTATETDTPTTEGTEPEVESPEPQSKREARYRVQLRETEAERDSLAGLLETLQRTEAERLAADVIHKPDALWAADINLTDLLDDTGLVSPDKVKAAAHAAKEKLGLELGAGERKKRGPVVPREGTGADRSTHNAWKDAFNK
complement(2622407..2622709)       hypothetical protein; C5O27_11885                                                    N/A                 GordoniaalkanivoransMNPEHLDNLIQHCEKYTGRPWDGTVEHATAAADMAAEIVDILNAHVDWLSDCKERVERAGLPWNTRTCRDQSRRDGDLAAPPQWIGNYSENCTPEWMLNR
complement(2622949..2624082)       PHAGE_Mycoba_DS6A_NC_023744: gp85; C5O27_11890; phage(gi609252472)                   5.07e-50            GordoniaalkanivoransMSTTEFWEARPVLVHVRDFARARRVPPLAMLSSLIARAVGSLDPNVVGPAVIGGHSSLNLAVALVGPSGFGKGATEAAAREATNLPLIPELPLGSGEGMARTFAANDEGAQDIRAAIFTASEVDGLAALGARTGATVMAVFRQAISGESIGSANAQKHTRVIVPAHGYRAVFTIGVQPERAGSLLGDTAGTAQRILWVPTADPDAPRIRPPEPERWTVPRTLVPSDRRTVLELPAAAIEAMESTQLAKLHGDPDVDPLDGHALLTRAKVAAGLMVLDGRMHTVTDEDWQLAGVLMRESDRTRERIAATLQDSARRSNRAKAHAVAERDEVVSERKLTRTKDAVIRWLERHGELPANQIRSRLKADLRDYLGAALAELV
complement(2624079..2624399)       hypothetical protein; C5O27_11895                                                    N/A                 GordoniaalkanivoransMRDRYTEVREYVQRLVGTAGGPTPDAGSPAWCALADGDQAKLIAVLTAGTRAVLEDELAALDDRRCAAKKTAIEVAQAANWSDVARRVRARDQALRSGAYIGRLNA
complement(2624744..2624998)       PHAGE_Mycoba_Job42_NC_021538: DNA binding domain protein; C5O27_11900; phage(gi514051868)     5.16e-21            GordoniaalkanivoransMTGPPKISLPLEYHVSKPKPSVSTSAQRRWANPNEAAEYLGVSTRTVRQMIADGRLRGYRNGPRMIRLDLNEIDASMTPFGGAA
complement(2625112..2626242)       PHAGE_Mycoba_Larenn_NC_028877: integrase; C5O27_11905; phage(gi971751438)            2.90e-73            GordoniaalkanivoransMASKRSRRAFGGLRKLPSGRWQANYTGPDGALHKAPSTFETKLDAEAWLADRRREIDRDLWNPLEADRPVVPMFGDYADEWLETRTVRGRPLKTRTRDHYRELLDRHLIPEFGDSPLDGITPAMVRQWHAHLLPTKATMRAHAYSLMRTIMSSAVSAEYIDANPCRVEGAGSAQRKSRTTPATIEELMTIVQNMPERLRLMVQLAAWCALRYGELIELRRKDIDLANGTVSITRAAIRRADGQYVVTTPKSEAGIRVVHMPPHLIPLATEHLEQHVGRGRDALLFEAGNGGYLTPTSLYRWYYPARRAAGRDDLRFHDLRHTGAVLAALTGATLAELQQRLGHSTVSAAMKYQHAAKGRDKKIAEALSKLVGGDTQ
2626396..2626424                   attR                                                                                 N/A                 ACTGGTTCGAGTCCAGTTGGGGGAGCAGA
2626588..2626860                   hypothetical protein; C5O27_11910                                                    N/A                 GordoniaalkanivoransMATRGFWIGEIRASDGVARKLRTKHNLSVEEVRAACVPNQYDRAGWEVDEVHGERLLVETHDAVGWIRVILQPIDVEDGIWQLRTAWRRM
complement(2627032..2627403)       PHAGE_Gordon_Bowser_NC_030930: hypothetical protein; C5O27_11915; phage(gi100034)     1.99e-16            GordoniaalkanivoransMIVTGAMLAEAATVADGKLYVLGGVLTDFWQPPGGYLIETLLIVLIQAEEGDLHNPQFVEVSITTPDGKSGSSRLPVPEVATAGTRAGFFFHKIGFEAKVPGQYVIVVESVSLPIEVHAPQFG

#### region 2 ####
4768233..4768245                   attL                                                                                 N/A                 CCCGACCCGACGA
4768499..4769497                   PHAGE_Strept_mu1/6_NC_007967: integrase; C5O27_21690; phage(gi93007413)              4.04e-25            GordoniaalkanivoransMSVTKYRTAAGAPRWRVTWRLPDGRSRSKVFGTLREARAFEAEAITARTRGVVIDPRRGDAVTVASVYASWLATRQDVTPKSRRGFEDNWRLHVQPEFGAWPVTKVDRESIQTWVNAMDCSPRTKRWRHSLLRMILAHAVADGLLLTNPAERTVFPPLDLAEHLYLTHAEVDELARRCGPQGDIVRILAYTGLRWGELTGLNVADVDLARRRISVRRSMTQVGGTLMTGKPKSRAGIRTVPLPRSLVAVLAARVEGRARTAPAVTSPKGARLSRENWVRAVRWREQVTALGYPTLRVHDLRHTYASLARAAGADLRLLQVAMGHASITVTAHT
complement(4769662..4770048)       hypothetical protein; C5O27_21695                                                    N/A                 GordoniaalkanivoransMAGQRKCDAAVAAGRMSKATEFLDAADHLGREMPNAAGDLYVDAGIAASDVICCARLGVHSNTGNHSEAVALLKRADSGSERHLNTLLNRKNKAAYTHQDLTAAELTKMGRAAEPLLEAAKKVVAARG
complement(4770048..4770677)       nucleotidyltransferase domain-containing protein; C5O27_21700                        N/A                 GordoniaalkanivoransMQLNKPFATVTPTLDGDVLAVLAAADLTFTISQVQRILGSASGEGIRKVLNRLSAQGVVLHDEVGRTHTYRLNTEHLAAPPIMALSRLNSTFLQRLEEHFTEWETALRYAAVFGSAATGRMRPDSDIDVFLVRATDSEDDAWDQRVTGLARLITAWTGNDGRIVEYTEDELRAAVAAGEPLLGDVSTQGLTVAGTRAWFTAQLRPARSS
complement(4770977..4771053)       tRNA                                                                                 N/A                 GGCCAGGTAGCTCAGTTGGTACGAGCGTCCGCCTGAAAAGCGGAAGGTCGTCGGTTCGATCCCGACTCTGGCCACCA
complement(4771101..4771177)       tRNA                                                                                 N/A                 GGCCCTGTGGCGCAGTTGGTTAGCGCGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAGTCCCGTCAGGGTCGCCA
complement(4771226..4771298)       tRNA                                                                                 N/A                 GCCCCCTTCGTCTAGCGGCCTAGGACGCCGCCCTTTCAAGGCGGTAGCGCGGGTTCGAATCCCGTAGGGGGTA
4771727..4771802                   tRNA                                                                                 N/A                 GCCCCTATAGCTCAGTTGGTAGAGCTACGGACTTTTAATCCGCAGGTCCCAGGTTCGAGCCCTGGTGGGGGCACTA
4772060..4772587                   acetyltransferase; C5O27_21725                                                       N/A                 GordoniaalkanivoransMPSDDVSMLRKIWPGFWRDLMLNTVISSSLVPPRVRAIALRMYGMKVGANVFISPAVWFGSKRVTLGTSTFVNYGCRFNTSSPISIGERCNIAMDVLFVTDTHELGPHSRRAGENKSAPIKVGNGVWIGARAVILPGISIGDGVVIASGAVVAADCENDGLYAGVPARRIKTIEQ
4773370..4774461                   PROPHAGE_Pseudo_KT2440: transposase, putative; C5O27_21730; phage(gi26991145)        1.95e-93            GordoniaalkanivoransMATRGPRAVDIVLTDDERRELEGWARRRTTASGLAMRSRIVLAAAEGGSNTEVAQRLGLNRSTVRRWRGRFVEQRCDGLLDEPRPGRPRTVDDEQIKDLITATLETTPKNATHWSTRSMAEHLDMSQSTVSRVWRAFGLAPHKQDSWKLSKDPLFTEKVRDVVGLYMNPPERALVLCVDEKTQIQALDRTQPIFPMLPGTPQRASHDYVRNGTSSLYAALDIASGKVIGSLHSRHRATEFIGFLRKIDAEVPDELDVHLVMDNASTHKTPAVKRWLTSHPRFVVHFTPTSSSWMNLVERWFAELTTKKLQRSTHRTVRALNADIRAWIDTWNDNPRPYVWVKTADQILDSIAHYCTRINDSGH
4774504..4774776                   PROPHAGE_Pseudo_KT2440: transposase, putative; C5O27_21735; phage(gi26991145)        4.71e-10            GordoniaalkanivoransMATRGPRAVDIVLTDDERRELEGWARRRTTASGLAMRSRIVLAAADGGSNTEVAQRLGLNRSTVRRWRGRFVEHRCEGLLDEPRPGRPRTV
4774862..4776006                   PROPHAGE_Xantho_33913: IS1477 transposase; C5O27_21740; phage(gi77747809)            1.82e-50            GordoniaalkanivoransMAGRKRHSAEDIVRKLRRADELAAQGKTGEEIAADLEVSAATLYNWRRQYGGMDGDVAKELKELREQNGRLKRLLADAELEKDALREIAKGKILSPTAKRAAIDMLKDVMNMSERKACKVVGLARSAYRQLPQAHTPADPDAGLRQQLRTYARQNPRHGFRRAWAWLRFDEGDTVNKKKVHRLWKEEGLQVRRAPRRKRAGQSSVPIVTADAPKVVWALDFQFDSTVDGHKIKIASMVDEHTRMSLLNIVDRSIAADRLIEELKKTFAIWGGPPKVLRMDNGPEFISEALQTFCAGSVGISYIPPGTPWNNGFIESFNNRLRDECLNRNCWPTLLEARVVIEDFKDDHNHRHRHSALGYKTPAEYAARCTHQHHPVGCEID
complement(4776068..4776364)       ISL3 family transposase; C5O27_21745                                                 N/A                 GordoniaalkanivoransRSAQLTHVSADAGQYIETVVAERAPDAIRCMDPFHVVQWATRAVDRCRSRVLNRIHGLSNDDRRNLRWALLKNPENLTPGQQRTRELIVKRANSELARA
4776423..4776494                   glycosyl transferase; C5O27_21750                                                    N/A                 GordoniaalkanivoransVSLTDAERPPRDPSSQPSTESSRS
4776502..4777755                   PHAGE_Paenib_Vegas_NC_028767: transposase; C5O27_21755; phage(gi971741608)           3.59e-75            GordoniaalkanivoransMTAPHIVDPAGLLGQALADASPDLMRELLQTMINALLSADADAVCGAEWNQHTPERTNHRNGYRHRPLDTRVGTVDVAIPKLRSGSYFPEWLLERRKRAESALITVVADCYLAGVSTRRMDKLVKTLGIDSLSKSQVSRMATDLDEQVTAFRHRRLDEVGPFTFVTADALTIKVRENKQVVKAVVLLATGVNGDGHREVLGMQVATSETKASWNTFFADLVARGLGGVRLVTSDAHAGLVEAIAANLPGAVWQRCRTHYAANLMAVCPKSMWPAVKAMLHSVYDQPTATAVHEQFDRLLEYTEGRLPKVADHLGDAREDLLAFTGFPDDVWRQIWSNNPTERLNREIRRRTDVVGIFPNRDAIIRLIGAVLAEQTDEWAEGRRYLGLEVLNRCRLTLTTDTTTTTEATTDPLIELPA
complement(4777771..4778430)       PHAGE_Ralsto_RSA1_NC_009382: transposase IRSO15-like; C5O27_21760; phage(gi145708108)     3.10e-08            GordoniaalkanivoransMRATRLLQKLLKIENLVVLDVGVEDDDDGQLLVVSVRAKRGQDSRCPHCRRRRPGYDRSHHPRRWRHLDLGGMRCYLQGHIGRVDCSLHGVVTEHVPWARPAAKMTRRFDDTVAWLAAHSPSSAVCEYMRVSWRTVQRIIARVVADHTGQTDRMDGLRRIGIDDIAYRKGRRYLTVIVDHDTGRLVWAREGATKKTLRQFFDELGATRGQVPSSGVTRF
4778727..4779992                   HNH endonuclease; C5O27_21765                                                        N/A                 GordoniaalkanivoransMTDSDTADAAALLEAIFDQLTEVTPPADDPTGAKTFAQIEWIRLIRNAADHQLGSHTANLDVLGVPERHGSTTKRLLIEMGFPPAVATRSVRIAGSLGALGKVEACAADGRLSGEIVDAVVRGIATIEKRSPTKLSDDDRTVYETELLTQALSGATPTEIQKHAQTIGNTIADDEGGIPASDDRSLDTLSHSVTDDSRVEIHANVTQAVGEKFIAMIDERSVPRPEPDGADDRRSPDQRRVDALEILLDQAAQGASQDSIGAPRTQTLLTIPADGGDPAFLPWTGSVTQATAQKQSCDGTITEIIINGETVPLAMGRERRLFPAHIRKAIIIRDRCCISCGAPPSHTQVHHIQHWSDDGDTDLDNGCLLCQRCHTRVHHNGWDIMIGFDRHPWLIPPADIDPRRRPLPAYNRRTMRLDDAA
complement(4780097..4780909)       PHAGE_Mycoba_Bactobuster_NC_031279: prohead core protein protease; C5O27_21770; phage(gi100061)     8.00e-05            GordoniaalkanivoransMLDLPGRGRAFVTDSGPRDAPAVFLLHSVLTTGLLCWYPTIPAINDRYRVITLDARWHGRGIESETFDLRDCADDVVAVADVLGIDRFVAAGFSMGGGIAQLTWRRHPERVSGLVLCSTGPFFSTNDPKHRRSSERTGRILAPLYRMLPRVSEKSLNKTTSHTSIWALRQFFSTPLSHLGEFGNGLGQFDSRSWLHEIDVPTAVVVSTRDRVVEPERQQLLLDGIPGSQRFEVDGGHACCVLGAKFFIPPFTEALDAVSTHAAVEGSSAG
4781027..4781944                   PHAGE_Mycoba_Bactobuster_NC_031279: prohead core protein protease; C5O27_21775; phage(gi100061)     5.58e-06            GordoniaalkanivoransMIDIARPKIEGSIAVADGDRRIGFAEYGSATGRAIIWLHGTPGARRQIPVEARGYAAERGVRLIGLDRPGVGSSTPHRYENIAAFAPDLETVLEALGIDEFAIIGLSGGGPYTLGVAHAMPDRVVAAGILGGVAPTVGPDRIPGGAMKLGSFLAPAVDVAGAQIGQIVSTALRFARPIAEPAITVYGHFSPQADRELLARPEFRAMFLDDLLHGGRRAMEAPFADVVVFAKDWGFRVSDVGVPVRWWHGDHDHIIPYAHGQHMVSLLPDAKLFELPGESHLSTLHMATDIIDELLAIWDQSRALK
4784927..4784939                   attR                                                                                 N/A                 CCCGACCCGACGA
