gi|00000000|ref|CP028189.1|  Staphylococcus aureus strain CFSAN018750 chromosome, complete 2719423, gc%: 32.87%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
284313..284326                     attL                                                                                 N/A                 GAATAAAATATGAA
complement(297768..298895)         PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; C9J90_01490; phage(gi971821285)     9.80e-46            StaphylococcusaureusMASFEKRGNKWRYKVQYKDSLGTKKIISKSGFRTKAEAKKAALEVELNIKNGYKENMNYTLEKWLDYYLETWRKDKVNDSTYNIELYSKKRLLDIYDPNINIKNITPSMHQKFINTLIQRGYSKSTLSKTHHLMKRAMERAKYDRIIYFNPCDGISLQHKNLKEKVKAKYLPSDKINLFLEMVKKRDIYQYFLFRTLIETGIRIGEANALNWNDYDKKLKTLSITKSYDQKRKKFGTTKNKENRIIFISDKLGKELFKLRTLQNANKIANSELYYTDYDFMFCNEFGDPLPRSTTHNTMKYVTGKILGKGNELSIHKLRHTHATLLLESNVPMKVIQERLGHKSEFITSNIYSHVTEKMNNTAKENFEKYIRDIF
complement(298948..299643)         PHAGE_Lactob_Lj965_NC_005355: putative superinfection immunity protein; C9J90_01495; phage(gi41179219)     7.20e-34            StaphylococcusaureusMQQESTSWYKQEWCIVLSLLFLFPLGLFLLWKFSKWPSLVRTIITVVIAVIALASITYIGQVQMIKPYVANLDSSSESDKSDSITDKDEENHEKAKEQTSGKYQESFDTITKGTSDSSTTSSSSSIDDSMTRDQKSALKQAEFYSEHLHLSKQDIYHQLISEYGGKFPKDDAQYAINHLKADYNKNALESAKSYAKSLNMSTREIYDQLISEYGGRFTPSEAQYAIDHLDK
complement(299655..300038)         hypothetical protein; C9J90_01500                                                    N/A                 StaphylococcusaureusMHQYKELMDDIKIKYIEMPDKLECLIIGNDLYINKNLSSSTSTSEIKEPMSLYHCHCHDFELLIPLNQIKQAIYLHDCKTIPQLSAYFKVPVTDILLTIYFYKVKYSDLHFLNMFKTDVLSIHQEII
complement(300185..300577)         PHAGE_Staphy_tp310_1_NC_009761: repressor; C9J90_01505; phage(gi156603892)           5.11e-21            StaphylococcusaureusMKESFSSRLKKAMLDKQMKQIDIINKSKLLSDNGAKITKTDLSQYVNGKTSPGQKKLYVLSKVLDVSEAWLLGYDVSPKRPTDEERHLNQNEQIIAAHIKDDVTDEEMKEIVNFIEYIKSKRNTNSNSDK
300745..300963                     PHAGE_Staphy_tp310_1_NC_009761: hypothetical protein; C9J90_01510; phage(gi156603893)     2.29e-26            StaphylococcusaureusMRFDYSSLNGKIVEKFGSRYSFAHAMQLSERSISLKLNNKVGWKDREIFKAVNLLEIKESEIPIYFFNTEVQ
300990..301265                     hypothetical protein; C9J90_01515                                                    N/A                 StaphylococcusaureusMLNIQLNEAMINDLVQKKVDEILSTYKRQVATVDIKDLVEITGLSKATLIQKIVYEPEIVAVTRRVGTRVLYLYPQVLEAYQTLINRIGGH
complement(301689..301895)         PHAGE_Staphy_CNPH82_NC_008722: hypothetical protein; C9J90_01520; phage(gi119953715)     4.20e-33            StaphylococcusaureusMKNVYACLLGEWVNLSNTENVIIDNSYNDVNHWYKEKIDTLFDYDYINIEIDNVHYRIHPSFIQVLTK
301956..302639                     PHAGE_Staphy_phiMR11_NC_010147: putative anti-repressor protein; C9J90_01525; phage(gi162290117)     1.02e-144           StaphylococcusaureusMQELQTFNFEELPVRTLEVDGEPYFIGKDVADILGYTNSRKTLSDHVDEEDKLTSRIVTSGQNRNVTIINESGLYSLIFSSKLENAKRFKRWVTSEVLPSLRRTGTYQTKPLTTSEQIQLIAQGNTELDERVTKIEETYPIMHGEAKHIQRLVAQKVAEIVRNKFNGFYDQVSRKLFAEIYKSIKKIFDVPSYNCIPRGRYQEAIRFVERWQPSYETTYQLEMKLTE
302738..302899                     PHAGE_Staphy_DW2_NC_024391: hypothetical protein; C9J90_01530; phage(gi658608037)     3.49e-20            StaphylococcusaureusMSNTYKSYIIAVMCITILAICLMPFLYFTTAWVIAASTGIAIFIFYDEYFFRE
302986..303303                     PHAGE_Staphy_StauST398_4_NC_023499: hypothetical protein; C9J90_01535; phage(gi588498258)     3.03e-54            StaphylococcusaureusMKNEFKNMSRQELRDLLAEKNGELFELVNEINKETEFDALLFSTVGVSNGHTTSSSHCALGDIAGLANLLNNENDYHDIANVIEMYKLKKFLGIDDDKDDDNNEE
303293..303559                     PHAGE_Staphy_tp310_1_NC_009761: hypothetical protein; C9J90_01540; phage(gi156603902)     5.15e-26            StaphylococcusaureusMKNDANEKMFVLYQQLFDEFKKTNENCLLEIEQTPTSQIIINFLHYHDSYKTNNKLLQILEVYPESHERMKNYIISVMRGQILVKKGV
303564..304100                     PHAGE_Staphy_phi5967PVL_NC_019921: hypothetical protein; C9J90_01545; phage(gi431810255)     1.83e-106           StaphylococcusaureusMNELQARELETFEQDDRFQVTDLNSANWVFKKLDAITTKENEINELASSEIERINLWRDKEIEKLQSNKEYLQSLVIEYFRIEKEKDKKFKLNTPYGKVTSRKGAKVIQVSNENKVIEQLEQRGLNDYVKLTKKLSQSEIKKDFNVTENGTLIDVNGEILEGVRIIEKPTSYTVKVGE
304101..304880                     PHAGE_Staphy_phiETA2_NC_008798: hypothetical protein; C9J90_01550; phage(gi122891730)     1.44e-170           StaphylococcusaureusMAGKTIQGVDILRQLGVKDISKQNANKFYKFAIYGRFGTGKTTFLTKDNNALVLDINEDGTTVTEDGAVVQIKNYEHFRTVIQLLPKVIEQLRENGKQIDVVVIETIQKLRDITIENVMKGKIKKPTFNDWGECASRIVSIYRYISKLQEEYQFHLAISGHEGINKDKDDEGSTINPTITIEAQDQIRKAIISQSDVLARMTIEENEQDGEKSYQYVLNAEPSDLFETKIRHASNITISSKKFVNPSINDVVQAIRNGN
304961..305455                     PHAGE_Staphy_80_NC_030652: hypothetical protein; C9J90_01555; phage(gi100014)        5.37e-108           StaphylococcusaureusMKGGEFLGAGEFTVKVANVEFNDRENRYFTIIFENNEGKQYKHNRFVPPFQQDFQEKQYIELLSRLGIKLNLPDLTFDTNQLINKIGTIVLKNKFNEEQGKYFVRLSYVKVWNKGDEVVNKPEPKTDEMKQIEQQANGKQTPMSQQSNLFANAPIEINDNDLPF
305468..306370                     PHAGE_Staphy_tp310_1_NC_009761: hypothetical protein; C9J90_01560; phage(gi156603907)     4.71e-69            StaphylococcusaureusMAGWIKIHRKIIDHWIWTDSKRLKWWMDLLLLTNHSDKKVMLGGKLVVLKRGSFHTSELKLSERWNVSRNTVRNYLNALEKDTMITTKKTKNGTTIIVHNYGIYQDNDDYKKQKTEQLSEQQCEQQSEQKKDNRLNRTMNKTKELKNIKNDKNVKNMKKEKKNYKVFDFFQENGFGFITQYILEDINYYLDAFCQDSDEILIAALKIAKDRNKVNWGYAKSILNSWLQMNLSNYDQIKAYEAQYKATKKMQNKQKENYKSKEKTPSWLTNQNQNTAVEVDEEFEKDRAEFLKKLNAHWGD
306371..306661                     PHAGE_Staphy_2638A_NC_007051: ORF048; C9J90_01565; phage(gi66395487)                 1.02e-23            StaphylococcusaureusMLRQNNICDDASTNRQYTLRKNKSLIKQFFDSKQYLYQADRKVAHVHVVNDIYLIHGHHKTMFKGVKKKFNNKLEFASYIESNELYFEKAKQLSLF
306676..306834                     PHAGE_Staphy_B236_NC_028915: hypothetical protein; C9J90_01570; phage(gi971755316)     3.51e-26            StaphylococcusaureusMKKFNVQITYTGMIEETIEAESLDEAENEAHDIARMEVPFDCDEYEIIVEEE
306840..307151                     hypothetical protein; C9J90_01575                                                    N/A                 StaphylococcusaureusMKTYPALAFEHKDESGVYIGEFDGWCQDLDEAILFANKDGSKPDKKKAKEIFLREEKNLSDILKERYGEDAIQNYRPSEWFKTCNLVDVEISEEKFKELLNND
307144..307674                     PHAGE_Strept_SpSL1_NC_027396: DNA-binding protein; C9J90_01580; phage(gi849256078)     1.57e-29            StaphylococcusaureusMTNSLTIDELIGKVEQWSVDRNINHASPLKQFDKLVEEHGELVRGLNKQDMQLIKDSIGDMFVVLIIMMQQIKGNIKLALSLSDFGEGEVNTLNYIKSLFYLGEKLEDFMSDNNNGNLFSEIQTLITNITYLLKETAYKNSSDLRTCLAHAYDEIKNRKGKMIDGKFVKDSDLKCY
307909..308373                     PHAGE_Entero_phiEf11_NC_013696: hypothetical protein; C9J90_01585; phage(gi282598755)     2.10e-27            StaphylococcusaureusMKSIATIEAEQYLYDSLIIDKMGMCGCHEVVIGRKPLTHGREIVDFLTYDTRNIFRAYEIKVSKADLKSSAKLSFVGHYNYLVLPRNLYEEVKYTDLSSILKQENVGIVIIGEGIIRKSGRKTLTMGDNVMLMDSLNCALNRENVKIRRGKRLS
308374..308607                     hypothetical protein; C9J90_01590                                                    N/A                 StaphylococcusaureusMILLNLTFMILTIILFYTCKYIVNKYIRMIAILLFTVCLSLAITLGFGFNFIEYILTIFLIIIFIELIELDIYLKRN
308650..309138                     PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; C9J90_01595; phage(gi100100)     4.83e-19            StaphylococcusaureusMKDLLIEYRKTRLCVLNKIKSLEYKVDEEDKLSNYKDILKDIDYTIEWLKCGHEPGNYNGIDRSQCYLVDNDVINKAFSESMYKKNSDIEYNDIINNVNNKVSYALMKLTPKELECFIMVKCEGLTYKESASLLNLKIGSVQNYIKRAEIKIKNELETNLFI
309291..309719                     PHAGE_Strept_SMP_NC_008721: hypothetical protein; C9J90_01600; phage(gi119953776)     2.28e-33            StaphylococcusaureusMARIELYEKLDIVNKLGLVEGWKRDGLTDEQIARNLGVSKHTLIKWKKNIPDFLDAIKKGKEVSDYELENALHKRAVGYYYEEETVTNKGEVVKIKKYEHANPTSLIFALKNRLPHKYRDKVEQEITNRNIEINIGDYVDDD
309706..310980                     PHAGE_Staphy_187_NC_007047: ORF005; C9J90_01605; phage(gi66395220)                   0.0                 StaphylococcusaureusMTTIKINIKEPNKIFNKNIFEIINDYSHFTEVHYGGGSSGKSHGVVQKVVLKALKKWKYPRKVLWLRKVQATITDSLFEDVRSCLISFKIWDLCKWNKTDNKVVLPNGATFLFKGLDNPEKIKSIKAVSDIVMEEASEFTLDDYTQLTLRLRERKHESKQIFLMFNPVSKLNWVYKYFFANGVQMDGVLIRQSSYKDNKFLDKMTKNNLEELANRNPAYYKIYALGEFATLDKLVFPKYEKRIINTDEIRHLPSYFGLDFGYINDPSALIHLKIDIENKKLYIISEYVKKGMLNDEIAKLIKNLGFSKEVLSADSAEQKSIAEIRKHGIGRIKPAIKGKDSIMAGIQFISQFEIIVDERCFKTIEELDNYTWKKDKNTGEYYNEPVDTYNHCIDALRYSVCNLIFKDKKTENKIDDLTRIRNMF
310993..312441                     PHAGE_Staphy_StB27_NC_019914: portal protein; C9J90_01610; phage(gi431809707)        0.0                 StaphylococcusaureusMTIYTQEINNTKFSKTANNDFLISNVEQLLKEEVLLSLISKHKTEQVPRLEMLEDYYLNRNTDILTDNRRINDYSDKADHRAVHNYAKYVTRFIVGYLTGNPITITHKDEITNEKLVDLNKINDADATNSDLALNLSIYGRAYEIVYRDTDDKDTFKLLDSKSTFVVYDTSLDKNMIAGVRYFNVKDFDNTPIQKIEIYTTNKIYYIEVRGGSFNSIDEIPHYYNDVPIIEYLNDQFKQGDFENVISLIDLYDQAQSDTANYMTDLNDAMLAIVGNIEIDGDEAKKFRQANMVHVKPSINVNGSEGNADVKYIYKQYDVNGSEAYKTRLQKDIHKYTNTPDLSDENFSGVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLFHILNLTGVHKYDYSTIDITFTTNLPKSLNESIEAFNSLNGGVSEQTRLKLLPIIDNPLEEIKKMEDEQNKVKKISDNSSFKAPFSHENEMTDINVR
312431..313774                     PHAGE_Staphy_StB27_NC_019914: minor head protein; C9J90_01615; phage(gi431809708)     5.19e-131           StaphylococcusaureusMSDNLKYWLERAKNVMDAESLVDAQAIIEIERIILLMYAEITKELLAFYAKYAKDTGLSIQEVKKMADSFDVLAFSNKAKQFVERKDFSEEANQSLKQYNLTMKISREKLLKQQLDLIVKDTSLNLQNKIEDKLSDAVNREVKRQAHILGEHVQIDDTEVKAVVNSNFKGAKWSTRLWNDMELVQKEVERVTSHVVIRGRHPNEFVSEFKKQTNSTSYNASRLLVTESARVQTESQKIAYLKDLGEDGEYKYVAKIDSKTSKLCHSLNGKIFKVKDMIPGVNAPPMHPWCRSTTVPHFGNWRDKFFKEREGKYQVEVKEAKLQEKAKNQMKEMIESGKIKIEINCEKQNRHMLGHHLYNENKKRAILNNKKLPSYTILSIDLLNELLREKMSTGNLILSDELFDMKEIINFNQIIGKVHIDNVYIETRKGKVHYSKTGAHIVPYIDK
319343..319356                     attR                                                                                 N/A                 GAATAAAATATGAA

#### region 2 ####
995485..995496                     attL                                                                                 N/A                 TAAAATATTAAA
997118..997351                     integrase; C9J90_05115                                                               N/A                 StaphylococcusaureusMWFLLIMSTTHKDFNQALIHSCTRNMHYLKWMHSHIMAIPLPHHNDLNTIMNLNYKLAHKKDASHKSSHQMENVS
997594..997605                     attL                                                                                 N/A                 TTTTCCAACATT
complement(997763..998206)         N-acetyltransferase; C9J90_05120                                                     N/A                 StaphylococcusaureusMSIITRLFNNSDFEKLNQLCKLYDDLGYPTNENDLKKRLKKITNHDDYFLLLLIKENKIIGLSGMCKMMFYEKNAEYMRILAFVIHSEFRKKGYGKRLLADSEEFSKRLNCKAITLNSGNRNERLSAHKLYSDNGYVSNTSGFTKQL
complement(998371..998748)         hypothetical protein; C9J90_05125                                                    N/A                 StaphylococcusaureusMFISLAIWSINSMGNKQCISLNLLLSDDTFAVISVMTTLGTAILGGIAPSIYGIFTSPIDKKSSFRAISDWEQEQRNNVKDLMMLLPFTLLSILIVIFIFQFAYSKLFNTIAIIIFIIILVVMFF
complement(999065..999655)         PHAGE_Staphy_PT1028_NC_007045: ORF009; C9J90_05130; phage(gi66395173)                3.42e-129           StaphylococcusaureusMSELTAKQARFVNEYIRTLNVTQSAIKAGYNANSAHVTACRLLKKPHIKQYIQEQKDKIIDENVLTAKELLHVLTNATVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELIEVPIKPSDRLKAREMLGKYHKLFTDKHDINGNVPIFINIGEWDGGDEGLDKAVKDVSNDNPNHTVIVDDIPLEDYESIRFL
complement(999652..999864)         PHAGE_Staphy_PT1028_NC_007045: ORF014; C9J90_05135; phage(gi66395178)                3.57e-32            StaphylococcusaureusMTDDNVNDHIIKNHIEMIVDRLATDKEFYIFDSLIQGLSYQDISSALDCSEQSVILWYETILDKIVGVIK
999928..1000471                    PHAGE_Thermu_OH2_NC_021784: integrase; C9J90_05140; phage(gi526118367)               8.32e-27            StaphylococcusaureusPLTSFEVFSTLAYTGCRAGEILALKWSDIDFENNTISITKTYYNPNNNKKKFQILPPKTESSIGKISVDPNVIKVLRDYKINVQNNWKNELYNDNHCNEKTINVDTNHYVTYQHTQKYLYALIQIHTLRIAHRIRCTHRNTRTITARYQYHYEYLCNHKFIQKRRLPVSPNGRRLVA
complement(1000566..1002182)       PHAGE_Cellul_phi14:2_NC_021806: chaperonin GroEL; C9J90_05145; phage(gi526178751)     8.08e-104           StaphylococcusaureusMVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
complement(1002258..1002542)       PHAGE_Pectob_CBB_NC_041878: holin; C9J90_05150; phage(gi100268)                      6.14e-09            StaphylococcusaureusMLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
1006880..1006891                   attR                                                                                 N/A                 TTTTCCAACATT
1007562..1007573                   attR                                                                                 N/A                 TAAAATATTAAA
