gi|00000000|ref|CP028342.1|  Vibrio parahaemolyticus isolate R13 chromosome 1, complete 3477006, gc%: 45.18%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(284900..285772)         PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; C7Y67_01450; phage(gi100148)     1.31e-75            VibrioparahaemolyticusMIKKCLFPAAGYGTRFLPATKSMPKEMMPVVNKPLIEYGVEEAIQAGMNGMCIVTGRGKHSIMDHFDKNYELEHQISGTNKEELLVDIREIIESANFTYIRQREMKGLGHAILTGRELVGDEPFAVVLADDLCVNEEEGVLAQMVALFKQFRCSIVAVQEVPADETHKYGVISGEMIKDDIYRVDDMVEKPEPGTAPSNLAIIGRYILTPDIFELIENTEPGKGGEIQITDALLKQAKAGCVLAYKFKGKRFDCGSVEGYIEATNYCFENLYLKDEKKSELGKHATKKEV
complement(286030..286674)         PHAGE_Altero_vB_AmaP_AD45_P1_NC_021532: hypothetical protein; C7Y67_01455; phage(gi514051613)     1.85e-06            VibrioparahaemolyticusMRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKDFETVVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS
286953..287483                     PHAGE_Vibrio_VvAW1_NC_020488: single-stranded DNA-binding protein; C7Y67_01460; phage(gi460042909)     1.06e-67            VibrioparahaemolyticusMASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYVEGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQQQYNEPPMDFDDDIPF
287627..287639                     attL                                                                                 N/A                 TTTGTAAAGTTTT
287669..288985                     site-specific integrase; C7Y67_01465                                                 N/A                 VibrioparahaemolyticusMKTKAFQMSSGESYSILLGEDGMPLPYHNLFVTLHYRNQSKASATCYRVFEHLCFLEEICQFEKIDLIERCKTGDFLTKKDFENIKKHSRFKVESFREMVARHKSTNVVSFKSKKLETARAKIVVNPEGDISPHTTYNRLTVFAQFIGWLEEELFPSKDSTAEFELKKIRGDKFGTSDEALDWGDWRSLEPVEEMRVLDVVRPDSPENPWKSESIRYRNQLIVNMLFALGCRRGELLKIRVKTDDHPSDIKKRQKDGRYFVMIRSQTDYSDKRRRKPEGKTLGRFVPMDNRLREMYETYLIHHRPNATGSEHIEYLFVTHNHKTQTNAALSLAQVNKIFREISEVVGFRVHPHGTRHTWNDKYSKFADKRIAEGKTTEAKSEADRQKLMGWTDDSKSAKRYSKRHDDKRAMDMALELQEEDSTTINSIVGQYDEDIGQ
288998..290551                     site-specific integrase; C7Y67_01470                                                 N/A                 VibrioparahaemolyticusMNHDFVSFGLANDSKVTTSLSHNGFEFDYLSDRWTLNRNVTVQVGFLDSFLQPLQEDIRDTLVFYAETSSANHTSNIAKTLRFYQEVTGENDLTEQGFASFKNKLPKKDWYKVSIVRGMIRQMRYLGLDEHVDDAVFKLTDQWRLGGNDKGVAVLTLDPETGPFSDLEFEAIGLHAAHRYAEGKLKTDQYACLSMFKASGRRAEQIASIKCKDFSYTAKYTGAPTYVVLIPKAKVRGGKFRSILKPYALVNSVAQVVELHIKELTAKVEGALGRKMTLEEKGELPLFIDVGTIEEIQSMNPDSLLDYLKSELPHIKSSNLVNKLNSAVNKLKIISERTGQPLKSTSYRFRYTLGTRAAREGAGTLTIANLLDHSDTQNVQVYVANSPEHAVQISKIMNQPLARYASAFAGKLVEDEDEANAENAGAARIPCREKDCDVGSCGTNSFCQDYAPIACYLCPKFRPWAHAPHHLILEWLVEERERLKADTNGDMQIVSINDRAILAVCQVIQLCREHNNG
290544..292925                     integrase; C7Y67_01475                                                               N/A                 VibrioparahaemolyticusMDNVLVFKPKHELEHTKNQADFIEFGRKIAPLNDKYVYDENYWPRVGNFTIFGASSRQRNPEELLDESLIPFAKAYVTYGGGTKAGIDNKFKAMRAIHAGWQKLREGEDFDATKLTAKDFDEAQRAIKESLSAGAAYQGGRSLNNLLKFLVEYKLVKPFKWKSGLKKPADNQTGDDADNRRQDKMPDEDALMALASINAQKTEDLSPRDIFTTSTMTLLLAAPNRGSEPQYLLDDPFYHKDLKVWEVLKMGGFDEEGVKEILKYQKENNIVLESNESAVFDESGDVIEDSQEVDDKDEDKLDLNVTVRLKGIKWYSGKEFGHAHKWIPSCMYGVVDTAVSRMQKQSEPARKFAKMLEDTSTFPRHELCPDVPEDQLLTMDEAAMALGLDLPSYGDLSDVQNRKKWHTARNGFLKRKGILRKDYLVTLRDLNLILRKDLPEDFPYIPFKNGNGHVKIKWSEALYAGFANSLNTTKSTIPTELQIPTINTLNEDLAPTKKKNRSTREALTGALSVFQRWGHGDFKITSHQIRHMLDTMAAVNGMDGEQRAKWAMRSDPRHNRYYDHTTPEEYGADFIDDHEADLVSRGLMVNQATGSTQIQVQVATPRTLQELNTKASLTAHTNEFGMCVTSYMAEPCTKYRDCINCDKQVCEKGDDGKCERIRKRLKDEKKLLKMDKKAVDDGVQGATQFYERRKLTTERCEQLLAMMEDPTIEDGSLIRLLNVEDVTQLDRAMDANGKKRLPKIENFQRIKETQKVTVNEMIGIESNPESFDDELFDDIDALDEMDAMDFFED
299723..299735                     attR                                                                                 N/A                 TTTGTAAAGTTTT

#### region 2 ####
2533139..2533150                   attL                                                                                 N/A                 TAAGAAAAAATA
2539795..2540280                   PHAGE_Staphy_StauST398_5_NC_023500: SsrA-binding protein; C7Y67_12655; phage(gi588498309)     2.06e-35            VibrioparahaemolyticusMAKKKSKQKAGSNTIALNKKARHEYFIEDEIEAGLELQGWEVKALRQGKANISESYVFMRDGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLTALSLYWSRSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMKSALR
2540348..2540715                   tRNA                                                                                 N/A                 GGGGCTGATTTAGGATTCGACGGGAATTCAGAAGTCTGAGGTGCATGCCGAGGTGCGGTAGGCCTCGTTAACAAACCGCAAAAAAATAGTCGCAAACGACGAAAACTACGCACTAGCAGCTTAATACCCTGCTCAGAGCTCTCTCGCCCTAGCTTCCGCACGTAAGACGGGGAATAACGAGAGATCAAACCCAAACGCGCTAGCCCGGATTCTCCCGCCTGAGAGATGAACGGCGAATTATAATTCAGGATAGTCATTCATTAGCGTGTCGGTTCGCAGGTGGATGGTGAATTTAAAGATCGACTAAGCATGTAGTACCAATGATGAAAGGTTTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCA
2540899..2542125                   PHAGE_Entero_P4_NC_001609: integrase; C7Y67_12665; phage(gi9627511)                  4.18e-72            VibrioparahaemolyticusMAKQIKPLSPTQVTKAKPLEKEYSLADGNGLYLRVKPNGAKLWIFNYIHPTTKKRKNISLGAFPDITLASAREKTRDMRQLVAEGVDPKTHRDNQRFNTQIAQSHTLRAVAEEWFEVKKHDVSDDYADDIWRSLELHIFPNLGNMPVSELSAPTVIQTLRPCEAKGALETVRRVCQRLNEIMTYAHHCGKVEVNRLEKISKAFKKPKAEHMLTIKPDELNILMQKMSLANIKLTTRCAFEFQLHTLTRPNECTRAEWNEIDFENRLWIIGRDKMKMKRDHKIPLSDAALQLLNFMKPISFGQRYVFPSASSADKHMNSQSINAAMKRAGMAGKLVSHGIRSIGSTALNEQGFNKDAIELCLAHVDKNTIRDIYNNAEYLEERRKIMDWWSNFILDASKNTNTIAKPSK
2542524..2542802                   PHAGE_Entero_P4_NC_001609: transcriptional regulator; C7Y67_12670; phage(gi9627517)     9.18e-06            VibrioparahaemolyticusMSVNTTPLLKIVRKSDVLQRVPFSRATLHRKINDGTFPPSIPLGANSVGFLSHEVDAIIAAMALGKDLHQTVSHLVEQRQSLFDNSLYALAA
2542940..2545360                   PHAGE_Halomo_phiHAP_1_NC_010342: replication protein RepA; C7Y67_12675; phage(gi167832381)     8.69e-12            VibrioparahaemolyticusMNVIAQSQASEHTLVRSTESCSVAILSGESLSFDHDKYRVVAVRNDKNNLAEVIRYYRDAGFNSIKLIIDSKKLPDQAVDFMMINYRHARCDLYDLASKRLYCLKDYNDTIQYLSLCYQLTNCGMRGDEIIDWLAKKLVRTIPLICSDAKSCLRTYRFCLHKDNNFLSKVLDCLELQLHHYHSSVQDFMKLRTPTKTIRTSTLDCPEVCEALANERTLAIKSATGTGKTKHVFGPITQLAEQNNKSVVYLSHLMALVEQYCIQNHAVSYTTQNLTQLEQSKAMGLVVNSVWKAHIQAYCHNADTLIIDEFEKVISTVVCSEHSLQMPKQRVFHCLSEIIRSIPQVIVGDADLSDISLGFLKDLRGDVTLIQCDKNPYLGIEAVITDKNQYLYSQDDLKSKLLEDKVFLFDSLVTLRGVVKQLGYEDKQGLDSETAALNDGVLVIHGENKGMDAQRAFLANPNEEISKYKAIIASPCLGSGFSIVKNFANRVVVFCDKTLNPFELVNFARRFRKAKEIWFTVDAHQDFFCRPTRERVYNANVHSAPTDHLEIAFGNVKSQFTAPLGLHLWLTLKELGFHVDSLPSSVYSQSCGSTTNKQYLKAYREALVNAIMQAIDLSQHDVKRLMMADKRTASDNAAISKHTIKSYYKLIEVTKEDVEFHFLFSKNRKLFDKLFSVPAPNEDDSKNSKYRRLANLISESLFKGHQFSAQSPSIMIHREQVLGFINLMIESRDLVNWTLHKDTHIPLSLKTNSTTNKKMLYFRQLMKSLGFEIGRFSGTTNKAKISLTQRARSYTRLSTESLDIVA
2545530..2547974                   PHAGE_Entero_EFC_1_NC_025453: DEAD/DEAH box helicase; C7Y67_12680; phage(gi725950530)     6.09e-26            VibrioparahaemolyticusMESTINKSKLSETDIITKFILPAIKDAGWDDMSQIRQEVKLRDGKVIVRGQAAARKKVKSADIVLYHKPSMPLAVVEAKANKHEIGKGMQQGLDYASLLEVPFVFASNGDGFIFHDKTNPAQLETEIRLEDFPTPQQLWDKYCVWKGYKTEHLPVITQDYHDDGSGKSPRYYQLQAINKTVEAVAAGQNRVLLVMATGTGKTYTAFQIIWRLWKSRAKKRILFLADRNILVDQTKTNDFQPFGPAMTKVTGRTVDPAYEIHLALYQALTGPEEHQKAYKQVDPDFFDLIVVDECHRGSAAEDSAWREILEYFGSATQIGLTATPKETDIVSNIEYFGDAIYTYSLKQGIEDGFLAPYKVVRVDIDVDLQGWRPTKGQIDKHGEVIEDRIYNQKDFDRTMVIDERTELVAQTITSYLKRTDPMAKTIVFCNDIDHAERMRRALINCNPEQVAKNEKYVMKITGDDEIGKAQLDNFINPKKDYPVIATTSELMTTGVDAKTCKLVVLDQGIQSMTKFKQIIGRGTRIDDRYGKLWFTILDFKKATELFADGRFDGDPVRVKETKPEDFETDEGLDEIIDGEDELEQDNPFEGEDIAPESIHESEAPYDSGSSPSDGSNSDDDWQDENRVRKFHVNGVTVKAIAERVQYYDSDGKLVTESFKDYTRKTMAKQFTSMDDFVKRWQDADKKQAIIDELAEEGIIWEALELEVGKDLDPFDMICHVVYDQPALTRKERADNVKKRNYFTKYGETAQQVLNNLLDKYADEGVQEIENIHVLKVKPFDEMGRPAEIVKKCFGGKEQYLEAISELEAEIYQSA
complement(2548041..2548700)       PHAGE_Bacter_Sitara_NC_028854: DNA methyltransferase; C7Y67_12685; phage(gi971749745)     1.10e-33            VibrioparahaemolyticusMMNLFQEDAVKWLSTLDASSVDLLITDPPYESLEKHRKIGTTTRLKVSKASSNQWFKIFPNDRFEVLLSEVYRVLKNHSHFYLFCDQETMFVIKPIAEKVGFKFWKPIVWDKVSIGMGYHYRARHEYILFFEKGKRKLNDLSIPDILTHKRVYRGYPTEKPVSLLEVLVAQSSREGELVVDPFFGSGSTLVAAKNLNRQFKGNDISSSAHEHIRQRVDF
2555313..2555324                   attR                                                                                 N/A                 TAAGAAAAAATA

#### region 3 ####
complement(2857349..2858164)       PHAGE_Mycoba_Milly_NC_026598: hydrolase; C7Y67_14125; phage(gi764160985)             3.21e-10            VibrioparahaemolyticusMKKFEIEGQQLAYLDKGEGPVLLFGHSYLWDCQMWAPQIEVLSQSYRCIVPDLWAHGESDAAPASTTSLVDYAQHMLALMDHLEIDKFSIVGLSVGGMWGAELTAQAPQRVKSLVLMDTFIGWEPEVTHKKYFAMLDTISQVQGVPEPIIEAVAPLFFANNADQVHPELVASFKQSLESLTGERAVEVARIGRMVFGRRDVIEDAEKFALPTLIAVGREDKPRPVFESYLMNDCITGSELVEIPEAGHISSLEQPEFVNQMLLSFLNKVHA
complement(2858322..2859338)       PROPHAGE_Escher_MG1655: glycation-binding protein, predicted protease/chaperone; essential for genome maintenance; C7Y67_14130; phage(gi16130960)     0.0                 VibrioparahaemolyticusMRIIGIETSCDETGIAIYDDEKGLLAHKLYSQVKLHADYGGVVPELASRDHVKKTIPLIKEALKEANLTSQDIDGVAYTAGPGLVGALLVGATIGRSIAYAWGVPAVPVHHMEGHLLAPMLEDNPPPFPFVAVLVSGGHSMMVEVKGIGEYKILGESIDDAAGEAFDKTAKLMGLDYPGGPLLSKLAEKGTPGRFKFPRPMTNVPGLDMSFSGLKTFTANTIAANGDDEQTRADIAYAFEEAVCATLAIKCKRALEQTGMKRIVIAGGVSANRRLRAELEKLAKKIGGEVYYPRTEFCTDNGAMIAYAGMQRLKNGEVADMSVEARPRWPIDQLTPIA
2859569..2859784                   30S ribosomal protein S21; C7Y67_14135                                               N/A                 VibrioparahaemolyticusMPVVKVRENEPFDVALRRFKRSCEKAGILSEVRRREHYEKPTTVRKRAKAAAQKRHAKKLARENARRVRLY
2859813..2860256                   PHAGE_Bacill_G_NC_023719: gp509; C7Y67_14140; phage(gi593777964)                     2.08e-13            VibrioparahaemolyticusMALIDQLKEEQKLAMKAKDKLRLGTIRLALAAIKQREVDEQITLNDDDILAVLTKMVKQRRDSVTQYEAAGRQDLADVEQAEITVLEEFMPQPLTEEEVAALIEKAIAESGAAGMQDMGKVMGVLKPQIQGRADMGKVSGLVRAKLA
2860405..2862165                   PHAGE_Helico_phiHP33_NC_016568: DNA primase; C7Y67_14145; phage(gi371671350)         1.50e-46            VibrioparahaemolyticusMAGHIPRSFIDDLLARLDIVDIIDARVKLKKKGKNYGACCPFHNEKTPSFSVSQEKQFYHCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSGGGGQFNSGPQASSSEKRSLYDLMGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFGQNKDNQDMLVTGGMLIENDKGNRYDRFRGRIMFPIRDRRGRVIGFGGRVLGEGTPKYLNSPETPIFHKGKELYGLYEVLQAHREPAQILVVEGYMDVVALAQYGVDYSVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFLPDGEDPDSYVRKYGKAAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASALIDKIPDPYFQELLEKLLDERTGFDNRLRQPRKKISETRPQPHKEIKRTPMREVIALLIQNPSYAQMVPDLSSVRDLSIPGLSLFADVLDKCQAHPHINTGQLLEHWRNSQNEALLSRLASWDIPLDEDNQEEIFLDSLDKIIAQCVEKQIENLQAKARSVGLSAEEKRELLALMLDLKA
2862265..2864127                   PHAGE_Synech_S_CBS1_NC_016164: group2 RNA polymerase sigma factor; C7Y67_14150; phage(gi356870821)     1.46e-34            VibrioparahaemolyticusMDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAPDADDLALNDDTNITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEEGINQVQSSVAEYPGTIPYILEQFDKVQAEELRLTDLISGFVDPDADDTAAPTATHIGSELSETQLEEEDEEDLEDDEESDDDSDDSEEDVGIDPELALEKFNQLRSTYQNLQLAINEYGYDSPKATVANEMMLDVFKEFRLTPKQFDHLVNELRTAMDRVRTQERLIMKSVVEYGKMPKKSFIALFTGNESSDAWLDEILASDKPYAEKIKRNEEEIRRSIAKLKMIEEETSLNVQNIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDE
2864268..2864343                   tRNA                                                                                 N/A                 GGCCCCTTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCCCCAGTTCAAGTCTGGGAGGGGCCACCA
2864716..2865858                   PHAGE_Halovi_HGTV_1_NC_021328: AdoMet-MTase; C7Y67_14160; phage(gi509140530)         4.86e-26            VibrioparahaemolyticusMSNVPKIVDLFCGCGGFGLGAELAGFHTLAAVDVDETLQSAYKLNFPNTRVVKGDLATMDEDSWRLILQDQKVDGVIGGPPCQGYSRMGKRESTDPRNQLLHHYFRHVMILKPSFFVMENVEGLLDECYSEALSDALSIVSNTYNIIGPTVIDAESFGAPTKRKRVFIIGYDPAKISNFDESNVFSTGHQKSTTVKDAIEDLSEPIRQSKDNSDFGWSTYNKKRKLSAYAQKMREMPPSGIGSQLAISKLNKRLISGFFDTVHTDSVKSRYMALEQGDVDKVSRSKKLAWNGLCPTLRAGTGADKGSYQAVRPIHPSSPRVITVREAARLQGFPDWFCFHPTKWHSFRMIGNSVSPLMSEQIMTNIKHSLLSVRPEKSAL
