gi|00000000|ref|CP032513.1|  Shigella flexneri strain SFL1520 chromosome, complete genome. 4575536, gc%: 50.89%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
262188..262199                     attL                                                                                 N/A                 TTGGTCTGGGTG
complement(262514..263278)         PHAGE_Entero_HK446_NC_019714: integrase; D6T62_01250; phage(gi428782218)             0.0                 ShigellaflexneriMPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDRAPKISTPRVKNGRIRWLTEEESKRLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISRNGTNTAQEENVVYLNAR
complement(263553..264721)         PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; D6T62_01255; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSGQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(264803..265150)         PHAGE_Entero_HK446_NC_019714: excisionase; D6T62_01260; phage(gi428782219)           4.78e-81            ShigellaflexneriMEEEIFTREEAASYLKVDKGTITQWIRSGRLQAVKINPDKPKSPYRICKSDCIAALKSVRHNSAVNAVDVQEVKACQSNYAVARGTAISSRQMDQELDALLKHRTKGKRKNFTIV
complement(265241..265489)         PHAGE_Entero_c_1_NC_019706: hypothetical protein; D6T62_01265; phage(gi428781761)     2.41e-55            ShigellaflexneriKNIYGHHFGAPHDAADFRRCVALVEQIPEIRDSFDKVAKRVPAFKGILNEWDSLVDLLKSEMKIHGNKAPETYRRISELRKD
complement(265531..266684)         PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; D6T62_01270; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
266757..267158                     PHAGE_Entero_HK629_NC_019711: hypothetical protein; D6T62_01275; phage(gi428782066)     5.69e-96            ShigellaflexneriMLLIQPGFGLSIKKGHMFGEKESQRKMVSIQLPFISIYWLNREATNYWYTCARAAFNDPDWFVKNHHAVRQAKRKANTTYMKAYRKAWKEHRDRYQQDMEKLESENMELRRKLGEAKRDIDAYKRLFNGESHA
267118..267327                     PHAGE_Entero_HK544_NC_019767: NinF protein; D6T62_01280; phage(gi428783269)          2.07e-35            ShigellaflexneriMLTSDFLMVKAMLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMSDPNSSMYEEEDDE
267320..268042                     PHAGE_Entero_HK140_NC_019710: DNA-binding protein; D6T62_01285; phage(gi428781998)     2.88e-166           ShigellaflexneriMNELINGNAIKMTSIEIAELVGKRHDNVKRTIETLAKNGVIRLPQIEDCGRINGLGLNQSFCVYVFEGEQGKRDSIVVVAQLSPEFTARLVDRWRELEEAAVNIPKTLPEALRLAADLAEQKMQLENQLAIAAPKVEFADRVGEASGILIGNFAKVVGIGPNKLFAWMRDHKILIASGSRRNVPMQEYMDRGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA
268042..268332                     PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; D6T62_01290; phage(gi100033)     7.89e-67            ShigellaflexneriMANLRKEARGRECQVRIYGVCNGNPETTVLAHYRMAGICGTGMKPDDLIGAWACSACHDEIDRRTHNLDNKDARLYHLEGVIRTQAILLKEGKIKS
268329..268691                     PHAGE_Entero_HK542_NC_019769: Holliday-junction resolvase; D6T62_01295; phage(gi428783393)     2.74e-79            ShigellaflexneriMSEYQFVLPYPPSVNTYWRRRGNQYYISDKGQKYRKEVQQIILQLKLDIFTKSRLRIKVIADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELENV
268688..268876                     PHAGE_Entero_HK629_NC_019711: NinH protein; D6T62_01300; phage(gi428782071)          7.26e-39            ShigellaflexneriMNATIQTIPELLIQTRGNQTEVARMLSCARGTVLKYNRDSKGERHVIVNGVLMVKQGKRGRR
268873..269496                     PHAGE_Entero_c_1_NC_019706: late gene regulator Q; D6T62_01305; phage(gi428781796)     1.74e-155           ShigellaflexneriMRLESVAKFHSPKSPMMSDSPRATASDSLSGTDVMAAMGMAQSQAGFGMAAFCGKHELSQNDKQKAINYLMQFAHKVSGKYRGVAKLEGNTKAKVLQVLATFAYADYCRSAATPGARCRDCHGTGRAVDIAKTELWGRVVEKECGRCKGVGYSRMPASAAYRAVTMLIPNLTQPTWSRTVKPLYDALVVQCHKEESIADNILNAVTR
269608..269802                     PHAGE_Entero_lambda_NC_001416: hypothetical protein; D6T62_01310; phage(gi9626307)     9.41e-38            ShigellaflexneriMKRGGAYYRFRLVGHFDVSSGTPTIAGEVCKMQSRNSSQVIVRACITVSGFFISAQQVRALSR
270208..270531                     PHAGE_Entero_c_1_NC_019706: holin; D6T62_01315; phage(gi428781797)                   3.24e-72            ShigellaflexneriMKMPEKHDLLAAILAAKEQGIGAILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFIRDLLDFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKKAGVEDGGNQ
270515..270991                     PHAGE_Entero_IME10_NC_019501: lysozyme; D6T62_01320; phage(gi422934277)              1.45e-115           ShigellaflexneriMVEINNQRKAFLDMLAWSEGTDNGRQKTRNHGYDVIVGGELFTDYSDHPRKLVTLNPKLKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIWASLPGAGYGQFEHKADSLIAKFKEAGGTVREIDV
270988..271455                     PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; D6T62_01325; phage(gi100040)     1.54e-106           ShigellaflexneriMSRVTAIISALVICIIVCLSWAVNHYRDNAMTYKEQRDKKVSELKQATATITDMQQRQRAADALDAKYTKELADAKAENDALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDGIIRDQTALRTLQEYIRTQCLR
271443..271595                     PHAGE_Salmon_g341c_NC_013059: hypothetical protein; D6T62_01330; phage(gi255252745)     1.43e-28            ShigellaflexneriMPSMIAIILLIILHIWLCRQGGDHFWSKSRLNISLLMLDIEHLARGKGLR
271801..272001                     PHAGE_Salmon_SE1_NC_011802: hypothetical protein; D6T62_01335; phage(gi219681238)     6.95e-34            ShigellaflexneriMKYPTVIVNGVSVRVDEDGRYNLNDLHAAAVANGEATEQQRPSQFLRSAQIKRFIKALWNKFNHLK
271974..272306                     PHAGE_Entero_ST104_NC_005841: ORF45; D6T62_01340; phage(gi46358692)                  3.27e-72            ShigellaflexneriMEQIQPLKIIKGGAEPGVWGVELLAIRYAAWIKPEFEIEVYEVFKTVVRLGVGAMSRLNRIDHIINTETKAISQCASQMAKWGVGGRKRLLHVARERAANEVQMYLPGMV
272563..272682                     PHAGE_Entero_P22_NC_002371: hypothetical protein; D6T62_01345; phage(gi9635552)      3.89e-21            ShigellaflexneriMAEIIPMTEEQKFQLEIYKLVMNQNAAAEEAFQFIGTDEV
272748..273916                     PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; D6T62_01350; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRKLRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
273925..274014                     PHAGE_Shigel_Sf6_NC_005344: gene 9 protein; D6T62_01355; phage(gi41057287)           1.24e-10            ShigellaflexneriFLASNGSTLTIQSNGAAFTATTIKIIAEQ
274014..274469                     PHAGE_Shigel_Sf6_NC_005344: head assembly protein; D6T62_01360; phage(gi41057288)     7.56e-110           ShigellaflexneriMIQFKPTRNIDLIEAVGNHTDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYQEIQPLTFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
274472..275164                     PHAGE_Salmon_vB_SemP_Emek_NC_018275: injection protein; D6T62_01365; phage(gi399498802)     4.98e-113           ShigellaflexneriMLYAFKLGRKLRGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAADLQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSQQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAGIGAGIGLLGSLF
complement(275243..275940)         PHAGE_Entero_P1_NC_005856: InsA; D6T62_01370; phage(gi46401643)                      5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(275969..276325)         PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01375; phage(gi19549017)     4.47e-77            ShigellaflexneriMSFIKTFSGKHFYYDRINKDDIDINDIAVSLSNICRFAGHLSHFYSVAQHAVLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKQMEEKIDSVIREKYGLPPVGNAANLLI
complement(276453..277277)         PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01380; phage(gi19549018)     0.0                 ShigellaflexneriMSQNLDATAINQIHALISAQGVNEIISKIGADAVALPENFRIHDLEKFNLNRFRFRGALSTASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEPGHADNTATLKLKKTAPFSALLSVNGERNSQKSLAEWIEDWADYLVGFDANGDTIQATKAAAAVRKITIEANQTADFEDNDFSGKRSLMESVEAKTKDIMPVAFEFKCIPFEGLKERPFKLRLSIITGDRPVLVLRIIQLEAVQEEMANEFRDLLVEKFKDSKVETFIGTFTA
complement(277343..277705)         PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01385; phage(gi19549019)     2.06e-83            ShigellaflexneriMASERSTDVQAFIGELDGGVFETKIGAVLSEVASGVMNTKTKGKVSLNLEIEPFDENRVKIKHKLSYVRPTNRGKISEEDTTETPMYVNRGGRLTILQEDQGQLLTLAGEPDGKLRAAGH
277793..278002                     PHAGE_Entero_mEp460_NC_019716: hypothetical protein; D6T62_01390; phage(gi428782352)     3.62e-16            ShigellaflexneriMDWVMSPSSGDALLCFVKRTVPAGSKGTNWYRQDYTQHKVVVPGASRCLAKVAHQTGGYPQKVDCQPQP
278143..278388                     hypothetical protein; D6T62_01395                                                    N/A                 ShigellaflexneriMTFDEKELDNAINKIIVTSLFSCLSDTQQKQFYESAFNMIERCCFCDADELPEKIRKQLADALRVRLSDQFSEMCSPNLDK
complement(278306..278602)         PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01400; phage(gi19549020)     7.02e-69            ShigellaflexneriMLKQVYEMKVQILNNNCEVVWSYDIAAPVDQSGDSWTNGKHQIMAGVVFSLRRALEQAEVFPSDPEWKWPFSICPNSESTFQKIGQKVALEEHQPTVS
complement(278775..279449)         PHAGE_Entero_SfV_NC_003444: repressor; D6T62_01405; phage(gi19549021)                3.76e-168           ShigellaflexneriMKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGATKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGAWKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHGDDVIALMHDTGETTFKRLIEDGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPRRYKIKA
279540..279740                     PHAGE_Entero_SfV_NC_003444: repressor; D6T62_01410; phage(gi19549022)                9.12e-43            ShigellaflexneriMKAYWDSLTKEQQGELAGKVGSTPGYLRLVFNGYKKASFVLAKKLEQCTSGAITKSDLRPDIYPKD
279784..280335                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01415; phage(gi19549023)     2.74e-120           ShigellaflexneriMGKHHWKIEKQPEWYVKAVRKTIAALPGGYAEAADWLDVTENALFNRLRADGDQIFPLGWAMVLQRAGGTHFIADAVAQSANGVFVSLPDVEDVDNADINQRLLEVIEQIGSYSKQIRSAIEDGVVEPHEKTAINDEQYLSISKLQEHAALVYKIFCVSESSDARECAAPGAVACRDCGETNA
280511..280690                     PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; D6T62_01420; phage(gi100119)     8.34e-14            ShigellaflexneriMRQVNRWFKEHYGVPVRVIRWEPETQRVIYLREGYEHECFSPLEQFRRKFREIEVGHEH
280680..281621                     PHAGE_Shigel_SfIV_NC_022749: replication protein; D6T62_01425; phage(gi557307567)     0.0                 ShigellaflexneriMSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIETIARQIGAGMSTVRTAIARLEAEGWLTRKARRQGNRNASNVYQLNVAKLQAAAFSQLSDSDPSKSDASKSDPSKFDASKSGKKAGFHPSESGGDPSVKSKHDPSDKKTSRPDASQPDTQTAEQEFLTRHPDAVVFSPKKRQWGTQDDLTCAQWLWKKIIALYEQAAECDGEVVRPKEPNWTAWANEIRLMCVQDGRTHKQICEMYSRVSRDPFWCRNVLSPSKLREKWDELSLRLSPSVSTYTEKREDPYFKASYDNVDYSQIPAGFRG
281618..282112                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01430; phage(gi19549027)     3.24e-112           ShigellaflexneriMSMSLLNDVQKFIEAHRGCTSGDIADAFAGYSRQRVLQSASKLRQSGRVAHRCEGDTRRHFPRLTERAQEPEPQPVRETRPVRNFYVGTNDPRVILCLTRQAEELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGNYVGA
282112..282765                     PHAGE_Entero_SfV_NC_003444: DNA adenine methylase; D6T62_01435; phage(gi19549028)     1.16e-160           ShigellaflexneriMSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAFGNPPYSRASQHEGQYITGMRYIMKHASAMRDKGGRYVFLIKAATSEVWWPEDADHIAFIRGRIGFELPVWFIPKDEKQVLTGAFFAGAIAVFDKTWKGPAISYIGRDELEACGEAFLAQVRQQAEKLVREMAA
282762..283088                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01440; phage(gi19549029)     6.20e-73            ShigellaflexneriMTTLTQCQQQVLDMLISYQKERGFPPTNQEVATMLGYRSVNAAVEHLRALEKKGVITIKRGVARGITLHTAVKDDDSEAVGIIRALLAGEENARLRATHWLHERDLKV
283085..283474                     PHAGE_Entero_SfV_NC_003444: crossover junction endodeoxyribonuclease; D6T62_01445; phage(gi19549030)     1.63e-90            ShigellaflexneriMKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSAACAAIVEQLRRLPKPTSAPASVEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVIPEGKVEITINKYEKTAGAAA
283494..284291                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01450; phage(gi19549031)     2.85e-174           ShigellaflexneriMNNLMVIDGIEVRRDAYGRYSLNDLHRAAGSQDKHKPAFWLRNEQTERLISELQICNSVNIEPVNVSRGGNNQGTYVCKELVYAYAMWISPSFHLKVIRTFDMVTSAPEKLSGQAADKMQAGVILLDFMRRELNLSNSSVLGACQKLQEAVGLPNLAPRYAIDAPADAPDGSSRPTLSLSALLKQYGIRLTANQAYHQMAKLGIVEQRERYSRTAINNIKKFWSLTAKGCMFGKNITSPANPRETQPHFFESRFPELLKLLDTVH
284299..285288                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01455; phage(gi19549032)     0.0                 ShigellaflexneriMRALLTPEIAPRMGIVLFRPGSELMPLFMQGRVLLEPEPERYSSFASGAVPAASQPLADDPAVRAVFRNEAVIRRAGGVECLESWLLREKGCQWPHSDWHSENMTTMRHAPGAIRLCWHCDNQLRDQFTERLESMATDNCARWVLSVVRRDLGFDDSHVVTMPELCWWLIRNDLADALPESAARKALRLPKPVVPSVTRESDLVPSVPATSIIQDKAKKVLALKVDPESPESFMLRPKRRRWVNEKYTRWVKTQPCACCGKPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHDELHADTVAFEEKYGSQLELIFRFIDRALAIGVLA
285303..285671                     PHAGE_Entero_cdtI_NC_009514: antitermination protein Q; D6T62_01460; phage(gi148609434)     3.18e-71            ShigellaflexneriMMRDIQMVLERWGAWAASDSSGVDYSPIAAGFKGLLPYTSKKRLACSDSDALIIEGCLARLKQKRPYEHSLLVAHYLYRISKRKIAKARGKDEKLIRIEIQLAEGFIDGCLSMLDLTLDLDV
complement(285700..287031)         NTPase; D6T62_01465                                                                  N/A                 ShigellaflexneriMLDTLSFTERDEFQRRNIAENIIKLLKPEADISPLVIDGAWGTGKTEFSIKLKNLIIEQETESKVVYIDAFKGDHAESPLLLITSAIASILPEEEKQHFIKRSLPAIRFGLKTVLKAGAGWFLRQEASEVSEEFQDAMKKASNAAIDGTIENLLEDHMESEKNINSLKSCIESISESQKIVIIIDELDRCKPSFSTNVIETIKHIFDINNVFFILVTNTEQLKASINHIYGYSINSQKYLDKFIKYTITLPDTCLINGHVVCKTSVIYWNYLVDKTKSLNEINRLSGRFIRDLIQRTNLSLRETQTFSRNLNIFQLLNDDEYKSSDPLINKIFVVAVFIHCFGDKEKLKQEITAESISHLADLLNIKEIPYSYERRSQIPEISIVFFGIIKDSITLNERFAPKSDEELKKFTTVYTDYEHLNFWSTTPRELLIKYINQMSFIQ
287328..287654                     PHAGE_Entero_SfV_NC_003444: holin; D6T62_01470; phage(gi19549036)                    4.61e-68            ShigellaflexneriMPHNPNTWLELVQSWWRGDTPLGAVIMSIVMAGLRIAYFGGGGGWKRKTLEILLCGALTLTFASALEYVGWPKSLSVAIGGGVGLIGVDAIRGAAMRVIGNKFGGSKE
287658..288134                     PHAGE_Entero_SfV_NC_003444: lysin; D6T62_01475; phage(gi19549037)                    9.94e-112           ShigellaflexneriMQVLNSQRKAFLDMVAWSEGTDNGRQPTRNHGYDVIVGGELFTDYSDHPRKLVTLNPKLKSTAAGRYQLLSRWWDAYRKQLALKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIWASLPGAGYGQYEHKIGDLIARFKEAGGVVNEAEL
288118..288510                     PHAGE_Entero_SfV_NC_003444: putative Rz lytic protein; D6T62_01480; phage(gi19549038)     3.03e-70            ShigellaflexneriMKLSYKLLIVGFFVTVIGSFIWSANHYYSKYQYEKKRADEAVRNAESATAITNNVLQSLQIVNTVLEANQHAKQQIALESQRAREDIKVAVADDDCASRPVPDVAADRLRKYADSIRAGSNDAVTDEPAR
288973..289305                     PHAGE_Salmon_118970_sal3_NC_031940: endonuclease V; D6T62_01485; phage(gi100133)     2.20e-75            ShigellaflexneriMPVNIDPEKLNDEREQVIAKWLFKDVDLISQQIELGEENVKRFDELLSIFDCCQSSWFATEHLFDNTELEKVWHEFESNFNKYINGGESKDLLMKMLDKLISSRFVFESR
289356..289706                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01490; phage(gi19549040)     1.31e-78            ShigellaflexneriMPPRIPKACRVRGCRSTTTDPSGYCESHKSEGWKQYKPGQSRHQRGYGSKWDVIRVRVLKRDKGLCQLCLRAGVVREAKTVDHIIPKAHGGTDADSNLQSLCWPCHKEKTARERLK
289823..290326                     PHAGE_Entero_SfV_NC_003444: small terminase subunit; D6T62_01495; phage(gi19548991)     6.83e-116           ShigellaflexneriMPHMAGTAGRSGRRPKPTARKALAGNPGKRALNKDEPVFTPIKGVEPPEWFAEEELPLATIMWQLTTKELCGQGLLCVTDLAVLERWCVAYEFWRRAVKNIARQGNTITGAMGGMVKNPELTAKKEQESEMSSTGAMLGLDPSSRQRLIGLAGQKKATNPFLKIIES
290323..292056                     PHAGE_Entero_SfV_NC_003444: large terminase subunit; D6T62_01500; phage(gi19548992)     0.0                 ShigellaflexneriMSRKSYPNVNAANQYARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKELAERAAKFIQLLPHTKGEWAFKRMPITLEPWQLFVICCAFGWVNKGSRLRRFREVYTEIPRKNGKSAISAGVALYCFACDNEFGAEVYSGATTEKQTWEVFRPARLMCKRTPMLTEAFGIEVNASNMNRPEDGARFEPLIGNPGDGSSPHCAVVDEYHEHATDALYTTMLTGMGARRQPLMWAITTAGYNIEGPCYDKRREVIEMLNGSVPNDELFGIIYTVDEGDDWTDPQVLEKANPNIGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWVSARSAYFNLVSWQSCEDKSLTLEQFEGQPCILAFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWVPYDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDYRYILEEAKAANKISPVSESPIDPFGATGLSHDLADEDLNPITIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTCIGNVVGKTIPGNDDVVKPVKEQAENKIDGAVALIMAVGRAMLYEKEDTLSDHIESYGIRSL
292068..292250                     PHAGE_Shigel_SfII_NC_021857: putative integral membrane protein; D6T62_01505; phage(gi526244693)     1.37e-34            ShigellaflexneriMIMLILAPLVGVLGALLLAYGAWLIYPPAGFVVAGALCLFWSWLVARYLDRTQSSVGGGK
292250..293491                     PHAGE_Shigel_SfIV_NC_022749: portal protein; D6T62_01510; phage(gi557307529)         0.0                 ShigellaflexneriMFFSGLFQRKSDAPVTTPAELADDIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSLKQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKAFGEVAELLPVDPSCVVPKLNSSWEPVYQVTFPDGSADVLSQEDIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRKSKQGVYYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTKPSDGSKAGKQKDNANADETTS
293433..294119                     PHAGE_Entero_SfI_NC_027339: putative phage pro-head protease; D6T62_01515; phage(gi849250289)     4.25e-164           ShigellaflexneriMAVKPVSRRITPMQTKQRLDVPLSLKSVSDSGEFEGYGSVFGVKDSHDDVVMSGAFAASLRAWSDRKALPALLWQHRMDEPIGVYTEMKEDDVGLYVRGRLLIDDDPLAKRAHAHMKAGSLTGLSIGYVLKDWEYDRTKEAFLLKEIDLWEVSLVTFPSNDEARISDVKNALARGEIPEQKKIERVLRDVGLSRTQAKAFMAGGYIALSLRDAEDVGSALNALKNLNF
294134..295339                     PHAGE_Entero_SfI_NC_027339: phage major capsid protein; D6T62_01520; phage(gi849250290)     0.0                 ShigellaflexneriMAVDIKDVEQVAQELQQKFDDFKAKNDKRVDAIEQEKGKLAGQVETLNGKLSELENLKSDLEKELLELKRPAGGAQNKLATEHKEAFVGFLRKGREDGLRDLERKALQVGTDEDGGYAVPEALDRNILTLLKDEVVMRQEATVITVGGSDYKKLVNLGGTASGWVGETDTRSQTATSRLELIEPLMGEIYGNPQATQKMLDDAFFNVEAWINSELATEFAEQEEIAFTTGDGTKKPKGFLAYESTDETDKVRAFGKLQHIVSGEATAVTADAIIKLIYTLRKAHRTGAKFMMNNNSLFAIRLLKDSEGNYLWRPGLELGQPSSLAGYGIAENEQMPDIAADAKAIAFGNFKRGYTIVDRIGTRILRDPYTNKPFVGFYTTKRTGGMLVDSQAIKLLKIAAA
295389..295589                     PHAGE_Shigel_SfII_NC_021857: hypothetical protein; D6T62_01525; phage(gi526244694)     8.87e-41            ShigellaflexneriMILKQDLKWSPDGMRVEVIRAGEYDDGALPARVQEIALQAGLAERGTSAKSSKATKEKKATTSKEG
295592..295915                     PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; D6T62_01530; phage(gi526244642)     4.25e-71            ShigellaflexneriMLLTMEEIKAQLRLDEDFDADDRHLQLLACAAQKRTETYLNRKLYAPDETIPDSDPDGLHLPDDIRLGMLMLISHFYENRSSVTEVEKLDMPQSFGWLVGPYRYFPQ
295912..296322                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01535; phage(gi19548997)     1.46e-64            ShigellaflexneriMKIRQAQTSATYILPDPGELNKRVLIRLRVDMPADNFGVEPQYLITFRTWAKVIQTSATTWQETAQTGDAITHYITIRYRRGITADYEVVCGDSVYRVKRQRDLNGARRFLLLECTELGECGQSHGGNNDDFLFAR
296297..296803                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01540; phage(gi19548998)     2.38e-115           ShigellaflexneriMTTSFLHVDFQQPAEMRFNRARVRRAFVTIGQRHMRDARRLVMRRARSAPGENPGYQTGRLARSIGYMVPRASKHRPGFMARIAPNQRNGEGNRRITGDFYPAFLFYGVRRGAKRRRSHHRGASGGSGWRLAPRNNFMVETLEKNRSWTRYFLARELRKSLKPERRHR
296800..297360                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01545; phage(gi19548999)     3.85e-135           ShigellaflexneriMKLTPVIAALRARCPYFENRVAGAAQFKNLPEVGKLRLPAAYVVPGDDSPGENKSQTDYWQELKEGFSVVVILSNGRDERGQFASYDVVDDVRQMLFKALLGWNPEACGNPITYDGGTLLDLNRHELIYQFDFSVISELTEDDTRQQDDLNSLDELRTLAIDVDYLEPGNGPDGDIEHHTEITLPS
297369..297536                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01550; phage(gi19549000)     2.41e-31            ShigellaflexneriMFVKPVKGRSVPDPARGDLLPAEGRNVDENNYWLRREAAGDIRRVNEKVNTDDEL
297523..299016                     PHAGE_Entero_SfV_NC_003444: tail sheath protein; D6T62_01555; phage(gi19549001)      0.0                 ShigellaflexneriMTSFNTIPSNTLVPIFYAEMDNSAANTAQDSGASLLIGHANNGAEIVANSLVLMPSADYARQICGAGSQLARMVEAYRQTDPFGELYVIAVPEATGAAATVTLTVTGEATESGTVNVYVGRTRVQAPVTNGDNVTTIASSIQDAINAVPALPFTASSSAGVVTLTARHKGLCGNEIPVSLNYYGFGGGEVLPAGVQIAVATGTAGTGAPVLTGAVAAMADEPFDYIGLPFNDTASVNTLVTEMNDTSGRWSYARQLYGHVYTAKIGTLSELVTAGDQFNQQHITLAGYEKETQTPADELAASRTARAAVFIRNDPARPTQTGELVGMLPAPKGKRFTMTEQQTLLSHGVATAYVESGVLRIQRDVTTYRKNAYGVADNSYLDSETLHTSAYVLRKLKSVITSKYGRHKLASDGTRFGPGQAIVTPAVIKGELLATYRQLERAGIVENYELFKQYLVVERDASDPNRLNTLFPPDYVNQLRVFAVVNQFRLQYSEESA
299016..299372                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01560; phage(gi19549002)     3.36e-84            ShigellaflexneriMARIGGTCYFKIDGQQLSLTGGIEVPMNRTVNDDIIGLDGSVDRKETHRAPYVKGTFKVPKNFPASKITSSDEMTITAELANGQVYVLSSAWLHGEANHNAEEGTVDLEFHGEEGDYQ
299372..299641                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01565; phage(gi19549003)     3.50e-60            ShigellaflexneriMKELELKKPITAHGETLSVLEFDEPTGKDVRELGYPYQMNQDESVRLLAHVVSKYIVRLAKVPQSSVDQMSPADLNAAAWLVAGFFLQA
299608..299790                     hypothetical protein; D6T62_01570                                                    N/A                 ShigellaflexneriMACGWFFPPGLTAEYLTDRFFDCASYWRINPFELLNMPISEIPLLVSQANRIEQEKRTHG
299783..301618                     PHAGE_Entero_SfV_NC_003444: tail protein; D6T62_01575; phage(gi19549004)             0.0                 ShigellaflexneriMAEFELKALITGVDRLSPALSKMQKKIRGFKRQAEEASQGGLALGGGLAAGLTLSLKSYADQENAATGLKVAMMDANGEVGKSFQDINKLAIGLGNQLPGTTADFQNMMQMLVRQGIPAENILGGVGKATAYLAVQLKKTPEAAAEFAAKMQDATGTASEDMMGLFDTIQKAFYLGVDDTNMLSFFTKTSSVLKMVNKDGLQAAQSLAPISVMMDQMGMNGESAGNALRKVIQSGLSVKKIRDVNKIMARQKLGVQLDFTDGKGSFGGLDNMFRQLAKLRKLTDVKRTGVLKAIFGDDAETLQVVNALIDKGKDGYDQIQQKMNKQASLNKRVQAQLGTLSNLWEAMTGTATNGLAAIGGAFSGDAKNITQWLGELGEKFTKFADENPRVIRGVVGLAAGLAILKLGLMGVGSAISIVSRIMSMTPIGMIATAIALAAGLIITNWDVVGPYFKKLWETIGPYFEAGWELLKKVFAWSPLGMVINHWGPVVKWFQDMWDKLKPIIEWFTDSSGDTVDAINSAQWGAGAYDAYGTGIPARGYTPYPAVDPAQSNNASDATGPNPFMINKASAPKVDGEIKVSFVNSPPGMRVMETRSSGFDVSHDVGYTRFGR
301637..303007                     PHAGE_Entero_SfV_NC_003444: tail/DNA circulation protein; D6T62_01580; phage(gi19549005)     0.0                 ShigellaflexneriMSPTPVGFFMYGVYMTWKDRLQDASFRGVPFKVEEESAGTGRRVETHEYPNRDKPYTEDLGKITFRPSITAYVVGDDCFDQRDRLIDALNKPGPGTLVHPTYGELKVCVDGEVRVSTSKNEGRIVRFDLKFVEAGELSYPTSGAATAQTLMSSCSALDDCISDSFSGFSIDGVADFVQNDVIGNASIMLGYVSDAMKVVDSAVSDVARLLQGDISVLLPPPSSGKNFVEQVQKMWRTGKRLYGNASDLVTMIKTLSGVSLGSDLQPRGVWKTDSKTTATATQQRNVVASTLRTTAISEAAYAVTRLPAPTTSAVMQNAAVGQATTPAQSTCWPSATHPALNNAPAVKNTVDLPTWEELTDIRDTLNTAIDKELSRTTSDALFLALRRVKADLNADINTRLEQSARIIQRTPDEVLPALVLAATWFDNAARDADIIRRNAITHPGFVPVIPLKVPVQ
303004..304083                     PHAGE_Entero_SfV_NC_003444: tail protein; D6T62_01585; phage(gi19549006)             0.0                 ShigellaflexneriMNDNVTLRVNGREWNGWTSVRIGAGIERLARDFSVEISRQWPGDGGITTLQPRIKNGSKVEVLIGDELVITGWVEATPVRYDARSVSTGIAGRSLTADLIDCAAEPTQFNGRELVQIAQALAAPFGIEVVNNGAPSGVIPDVQPDHGETVIEVINKILGQQQALAYDDPHGRLVIGGIGSTRAHTALVLGENILSCDTEKSIRERFSVYQVAGQRAGNDDDFGEATTTALRARTEDAFIARYRPMYIRQTGQATGAGCIARADFEARQRAARTDETTYVVQGWRQGNGTLWQPNQRVIVFDPVCGFDNTELLVSEVTFTQDQNGTLTEIRVGPPDAYLPEPEDPGARKKKKARVQEDPF
304083..304631                     PHAGE_Entero_SfV_NC_003444: tail protein; D6T62_01590; phage(gi19549007)             2.41e-131           ShigellaflexneriMRTIEAMQRQLLGLIGRAVVKSISAATKCLTVDVSLIAGEPKAGVEHLEPYGFTARANSGAEAVVLFPDGDRSHAVVVTVSDRRYRLKGLQTGEVAVYDDQGQSVTLTREGIVVDGAGKTITFRNAPEARFEMDLEVTGQVKDLCDSGGTTMSAMRLAYNGHRHRENGQGSNTDKPDKAMEA
304628..305056                     PHAGE_Entero_SfV_NC_003444: tail protein; D6T62_01595; phage(gi19549008)             7.56e-99            ShigellaflexneriMMELWLTVNGKRTCASAPLDPLTRAVVISLFTWRRAEPDDNADVPMGWWGDTWPAVQNDRYGSRLWLLQRSKLTNQLVQTVRGYIRECLQWMIDDGVVSRIDLDIRRTGINELGNSITLWRRDGPVMISFDDLWSAITHGGQ
305043..306101                     PHAGE_Entero_SfV_NC_003444: tail protein; D6T62_01600; phage(gi19549009)             0.0                 ShigellaflexneriMADSEFQRPTLAENISMLRNDLFARLDVSDTLRRMDEDVRAKVYAAALHTVYGYIDYLAMNMLPDLCDEFWLARHAAMKRCPRKGATAASGYMRWEGVSDGLKVTAGSVIQRDDLVQYTATADATSSGGVLRLPIACSTAGAVGNADDGTALILVTPVNGLPSSGVADTLTGGFDTEELETWRARVIERYYWTPQGGADGDYVVWAKEVPGITRAWTYRHWMGTGTVGVMIASSDLINPIPEESTETAARQHIGPLAPVAGSDLYVFRPVAHTVDFHIRVTPDTPEIRAAITAELRSFLLRDGYPQGELKVSRISEAISGANGEYSHQLLAPADNISIAKNELAVLGTISWT
306092..306676                     PHAGE_Entero_SfV_NC_003444: tail protein; D6T62_01605; phage(gi19548988)             3.26e-140           ShigellaflexneriMDVTNDDYIRLLSALLPPGPAWSARDPAIAGAAPSLTRVHQRADVLMRELDPRTTTELINRWERLCGLPDECIPAGIQTLRQRQQRLDAKVNLAGGINEDFYLAQLAALGRPDATITRYDKSTFTCSSACTDAVNAPEWRYYWQVNMPVATNTTWMTCGDPCDSALRIWGDTVVECVLNKLCPSHTYVIFKYPE
306680..307330                     PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_01610; phage(gi19548989)     2.57e-144           ShigellaflexneriMHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKSDGTVQTALENLGLGEAAKRNVGTGANQIPDMSLFASINTVTAAAQKFPSGLILQCGQLNGAPNVSSTYGMRFPMTFSRVIAVVVTLNVTGAAGQPTVSATSVQNTGFNITVSPGSGYGSSADAYYIAMGY
307239..307736                     PHAGE_Entero_SfV_NC_003444: tail fibre assembly protein; D6T62_01615; phage(gi19549010)     2.64e-108           ShigellaflexneriMSRTLDLILLCRPVQDTVHLLMRITLQWDINEMSYFYSASTNGFYSTEFHGTNIPDDAVEISESEWKTLINAQSVTKMITCGENGHPVIVDRPSPTPEQLALINDEKKSALIAEATNVIAPLQDAVDLGMATDDETKLLLAWKKYRVLLMRVNVVKPEWPMHPNK
complement(308509..308925)         PHAGE_Shigel_SfII_NC_021857: acyltransferase; D6T62_01620; phage(gi526244659)        4.13e-90            ShigellaflexneriGFIVFSITAIMSAYQLLNQKPLLFKIISIFNADIISSSYIQAINTIITTVGLIIFNIFIAKIICGNDFIVRAGRNTLNICGMEYITKLFIPMALAIIGFSVTIPNPICAIIYTCICVYVSDKIGHWLSRTVGGPFLIK
complement(308948..309645)         PHAGE_Entero_P1_NC_005856: InsA; D6T62_01625; phage(gi46401643)                      5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
320487..320498                     attR                                                                                 N/A                 TTGGTCTGGGTG

#### region 2 ####
complement(535944..536639)         PHAGE_Entero_Mu_NC_000929: Mom; D6T62_02815; phage(gi9633544)                        2.73e-170           ShigellaflexneriMGKEKKSRILTKPCVIEYEGQIVGYGSKELRVETISCWLARTIIQTKHYSRRFVNNSYLHLGVFSGRDLVGVLQWGYALNPNSGRRVVLETDNRGYMELNRMWLHDDMPRNSESRAISYALKVIRLLYPSVEWVQSFADERCGLAGVVYQASNFDFIGSHESTFYELDGEWYHEITMNAIKRGGQRGEYLRANKERAVVHKFNQYRYIRFLNKRARKRLNTKLFKVQPYPK
complement(536590..536778)         PHAGE_Entero_Mu_NC_000929: Com; D6T62_02820; phage(gi9633543)                        7.71e-39            ShigellaflexneriMKSIRCKNCNKLLFKADSFDHIEIRCPRCKRHIIMLNACEHPTEKHCGKREEITHSDETVRY
complement(536872..537069)         PHAGE_Entero_Mu_NC_000929: Gin; D6T62_02825; phage(gi9633542)                        6.47e-30            ShigellaflexneriVLIGYVRVSTNDQNTDLQRNALVCAGCEIFEDKLSGTRTDRPGLKRALKRLQKGTHIENDDRIN
537163..537918                     PHAGE_Entero_Mu_NC_000929: tail fiber; D6T62_02830; phage(gi9633540)                 8.55e-115           ShigellaflexneriMQKNGDTLSGGLTFENDSILAWIRNTDWAKIGFKNDADSDTDSYMWFETGDNGNEYFKWRHHLTGGRVKDLMNLKWDALYVLVKALFSSEVKISTVNALRIFNSSFGAIFRRSEECLHIIPTRENEGENGNIGPLRPFTLNLRTGRISMGHGLVVTGDIFTNRFLINSSTGMWIHMRDQNVIMGRNAVSNDGAQALLRQDHTDRKFVIGGLGNRQFGIYMINNSRTANGTDGQAYMDNNGNWLCGSQVIPG
537969..538666                     PHAGE_Entero_P1_NC_005856: InsA; D6T62_02835; phage(gi46401643)                      5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
538683..538924                     PHAGE_Entero_Mu_NC_000929: tail fiber; D6T62_02840; phage(gi9633540)                 2.49e-09            ShigellaflexneriIPGNYGNFDSRYVKDVRLGSQQYYGVNNWQTWNFQCPSGHVLSGINVQDTGSTLPIILRVFITDRFKSIMALGIMRAFAA
538926..539453                     PHAGE_Entero_Mu_NC_000929: tail fiber assembly; D6T62_02845; phage(gi9633541)        2.61e-116           ShigellaflexneriMMHLKNIKAGNAKTLEQYELTKNFDVIWLWTEDGKNWYGEVKNFQPDTIKIVYDENNIIVAITKDASTLNPEGFSVVEVPDITANRRADDSGKWMFKDGAVVKRIYTADEQQQQAESQKAALLSEAESVIQPLERSVRLNMATDEECARLESWERYSVLVSRVDTAKPEWPQKPE
complement(539482..540015)         PHAGE_Entero_Mu_NC_000929: tail fiber assembly protein; D6T62_02850; phage(gi19584573)     3.55e-124           ShigellaflexneriMMHLKNISAGNPETKEQYQLTKQFNIKWLYTEDGKNWYEEQKNFQPDTLKMVYDHNGVIICIEKDVSAINPEGASVVEVPDITANRRADISGKWMFKDGIVIKRTYTGEEQRQQVENEKQSLLQLVRDKTQLWDSQLRLGIISAGNKQKLTEWMLYAQKVESTDTSSLPVTFPEQPE
complement(540018..540473)         PHAGE_Entero_Mu_NC_000929: tail fiber fragment; D6T62_02855; phage(gi19584574)       4.86e-98            ShigellaflexneriQAVGWNWNSGVYDANISGASTLILHFNKNTGSCPAVQFRVNYKNGGIFYRSARDGYGFEAGWSEFYTTTRKPSARDVGAYTQAECNSRFITGIRLGGLSSVRTWNGPGWSDRSGYVVTGSVNSNRDELIDTTQARPIQYCINGTWYNAGSI
complement(540515..541671)         PROPHAGE_Escher_CFT073: transposase insF; D6T62_02860; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA

#### region 3 ####
678371..678382                     attL                                                                                 N/A                 GTTACATTAAGG
679856..680914                     PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; D6T62_03580; phage(gi371496158)      1.07e-24            ShigellaflexneriMLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLGEPLQAALRIRIQASDVSLVLQPPQQTCIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
complement(680915..681734)         pyridoxal phosphatase; D6T62_03585                                                   N/A                 ShigellaflexneriMTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFLSGAGAGYTCYLLWHLFVLSCKNRAGSGPNARSPATHDAETPHSRSDVCRCNGLAPDRACHSHVLGANPAAGTASDFHTSRFSGNDATSRRMEVHPDARPAAIAAFWACRTTGTGVMVLARSGYCTRRQQQRTFDEMGGARLVDGKRRGIRRLYQYAGSRWYRRGDGQRRRGKSARQHCDWHHRQHCPVHLPPDLA
681871..681882                     attL                                                                                 N/A                 AAATGCAAAGGA
complement(681970..682413)         PHAGE_Entero_HK022_NC_002166: integrase; D6T62_03590; phage(gi9634144)               8.81e-43            ShigellaflexneriMDLALVTGQREGDLAAMRWEDIRDSRLYVEQQKTGAKIRISLPTTISRLNLTLADVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFHEIRSLSGRLHSAEKGSDFTQAHLGHRSSSMTDKYRDGRGREWKDI
682603..683300                     PHAGE_Entero_P1_NC_005856: InsA; D6T62_03595; phage(gi46401643)                      2.74e-56            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNAVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(683316..684143)         PHAGE_Gordon_BritBrat_NC_030942: prohead core protein protease; D6T62_03600; phage(gi100061)     1.89e-16            ShigellaflexneriMALFQRAINTQAYLKAGIMGFAGDGKTYTASELAIGLVMLMRQRGIEAGNRPVMFLDTETGSDWVKPRFDAENIELFTAKTRSFVDLLEAINEAESSGSVMIIDSISHFWTGLCDEYARRRNRKRGLEFSDWAWLKQEWRRFTDRFVNSQAHIIMCGRAGYEYDFFEGDDGKRQLAKTGIKMKAETETGYEPSILIQMEKQMNIETGQVWRTARILKDRSTRIDGQVFSNPTFKNFLPHIEFLNLGGEHLGIDTSRDNSELFANDGTPTWLKEKRA
complement(684149..684445)         PHAGE_Entero_933W_NC_000924: host-nuclease inhibitor protein Gam; D6T62_03605; phage(gi9632481)     3.91e-54            ShigellaflexneriMSAYPIFDRIEEMAWARHYQQIVREEKETELADDLEKGLPQHLFESLCIDHLQRHGANKQAISHAFDDDVEFQERMAEHIRYMAETIAHHQVDIDLED
complement(684423..685784)         PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; D6T62_03610; phage(gi985761253)     0.0                 ShigellaflexneriMSVKLRLPQAVFSITKKHQPYEFKNFISAWLDTEHIDRGLLTKEWRKGNRVSRITRTTSGANAGGGNLTDRGEGFVHDLTSLTRDVATGVLARSMDVDIYNLHPAHAKRIEEIIAENKPPFSVFRDKFITMPGGLDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKPQPSGAMTDEQATAETVEPNATEHHQNTQPLDAQSQVNSVDEKYQELRAELHEARKNIPPKNPVDADKLLAASRGEFVEGISDPNDSKWIPGHHISSNEVKKTENEVRQTEDKQHQNSEPEEGTPCNQTGEDNCPDCGAVMGDATYQETFDEKKPDEAQEEEPKKTEKADDLLPENAGSDQHNDSNNETGEDELNWKKQVLIAAVYGLCANPACIAYAPAIPDIAMMIANKLENFGVTSDERLPDF
685823..686241                     PROPHAGE_Xantho_33913: ISxac3 transposase; D6T62_03615; phage(gi21231087)            3.48e-12            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVAA
686292..687505                     PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; D6T62_03620; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDHLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVVFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWGRRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
687545..689893                     PHAGE_Stx2_vB_EcoP_24B_NC_027984: P; D6T62_03625; phage(gi937456261)                 0.0                 ShigellaflexneriSEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYGISALSVPFGGGKGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLPYKDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYQDTINAFYGKQQYLFNPPWESLADKFQFREAELTLVNGVNGHGKACPLNEPILLADGTWTTHGNVKIGDQVASVDGNPSTVTGIFPQGVRDVYRVTFEDGRYVDCAGDHLWEVTSRGFTKGEKRRVIDTFGLKRLSETKRHKNGVRIPEITGDFGDHSEPLAWVIGSLLGDGSLSNGSVKFSNVEPYMIERMKAELPDYNFSGDGKDWLISTARGQVNPLMETLRGYGLMGCTAKNKFIPRVFFSANKSTRIGMLCGLLETDGYVEKDGTLVFSSASEELRNGVVQLVNSLGGSCRTRVKTGVTYTYKDDKRHGMDSYEARIRLTREIREAIRSPRLNGRLTAHRFEGCGVFVRNVEKIGNAECLCIMVDHPRHLYVTRGYVATHNTEVVGHMALEAMRQGVKTCIASLELKPGILLKRLTRQATCCKMPPVLEIDSAFKFYDERLWVFGLTGTAKADRLIEIFDYARRRYGIQLFIIDSLMKCGIGDDDYNGQKAFVDSICDFKNKTNSHVILVTHSRKGDSEEKPTGKMDVKGSGAITDLTDNLFIIWRNKARERALQRVQSGEKMSEKDEQLLASPASVLMLEKQRNGEGWEGGVPLFLDEQSHQFLQLESGSPYSYIANMPKSEYDEAWRQENVTEY
689968..690246                     PHAGE_Entero_933W_NC_000924: hypothetical protein; D6T62_03630; phage(gi9632497)     2.63e-58            ShigellaflexneriMNDSYRQFENWWSKDKSQFTGDDELKEFAWVIWQAPRAAIELDIDWPESNDDFWKDGEEGAYAMGHEDGKDKTVIAVMKAIRAAGIKEKNFR
690243..690653                     PHAGE_Entero_mEpX1_NC_019709: NinB recombinase; D6T62_03635; phage(gi428781922)      4.02e-96            ShigellaflexneriMKQTIFLRTKQQQQAAINAILSTPLDKDKPVTIRITDYKRNLDQNAKFHAMLADIARQVQWCGKWLKPEQWKVLLISGHAVATKQEADVLPGLEGECVNIRESSAQMSVKRMASLIEYTTAWAIGQGVRFTDRRYE
690650..690826                     PHAGE_Entero_Sf101_NC_027398: NinE protein; D6T62_03640; phage(gi849122311)          1.80e-36            ShigellaflexneriMRRQRRSFTDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRHRARK
complement(690868..691176)         PHAGE_Shigel_Stx_NC_029120: helix-turn-helix family protein; D6T62_03645; phage(gi985761268)     6.01e-67            ShigellaflexneriMTGKRTLPTMTHDEMAAKWMEDPAFKAEYDAIADEFALLDEMLAARKEAGLTQAEVAERMGTKATAITRMESNLASGISGPSFATLKKFARATGKKLQIRFV
complement(691166..691495)         PHAGE_Shigel_Stx_NC_029120: hypothetical protein; D6T62_03650; phage(gi985761269)     2.86e-58            ShigellaflexneriMNYTIEYYSEEVRLEVDQLPLSMRARYQHLVERMKVYGSNLGEPHTSAFGDGLFELRIKGNDGIARVFYCTLTGKRIIMLHSFVKKTQKTPPAERKKAETRMKEVKHDW
691520..692377                     PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; D6T62_03655; phage(gi100120)     7.14e-132           ShigellaflexneriMSAQYIDSAISGRYTVSAPYKAGAGIGVLKFNIEHNRAHAVFSCHEHCYAQIMVGRAGASQDAPGSMLTGYANPVRLTTSVIGVPCGEFFEFNIGAVTMTTLPTLSQPEIAIVDGQAVTSSLAVANFFSKRHDDVLKKIRILDCSPEFCARNFAETSILVRQPNGGTRKLPCYQITRDGFAFLAMGFTGKRAARFKEAYINAFNQMERSLSGAGAADMSSVAQNARGVYLHLREIHQIWTSQLYPMLKAVESPLAGKLYDRVGDAVFGAALVDSRLNGSDKEVLP
692374..692607                     PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; D6T62_03660; phage(gi100121)     4.69e-20            ShigellaflexneriMIRHIVNFLYHRYNHCPRVGQWFTTSNGYVLRVCLVSTESQKVVCQVQGRTHTLSYPLVAFQPGKMFKRLGGGYASV
692594..693501                     PHAGE_Burkho_BcepIL02_NC_012743: putative DNA replication protein; D6T62_03665; phage(gi238801636)     5.43e-38            ShigellaflexneriMRPSDLLLDFGHPVAYYPGLVKYMGSPHAVIFFGQIFYWDKAHAAEGVHKTREEIQHETGLTFEQQAVARKHLVSRGILVETNKRLEHKMFYRIDCERLNEIINENNQFPEMGKPVFGKLNPISRRRESLHRGHGKPLAAEKGKPISILQRIQQRLLQRILQRVKTLLAHLLTRLHQRVLPDRNIHRNLNRPGRNIQNVLVVTQNPQPSKPGKPGSGRENLKPCLMANAMLPGYVPQEIPAHSSSRLRRSLDPIVTSKTSGNSQPLPEVGDSDRSMSWLAWEPCLTNSVNPVTNHSGA
693512..694390                     PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; D6T62_03670; phage(gi18249882)     6.25e-180           ShigellaflexneriMMTFNLREQQKRLQARMDELRAEIAFAQKGEKPWPYRSCLMREGRGYCEKHGEYHTHILVWSDRNGEDREKISCCPDCLIAEANDLTMELSSIKAEELTDNAGIALRFRDCEFDNYLEVNPGAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHLAVAMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEKTADEVIERYASMDLLIIDEVGVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWAFISPRIADRITDGGRNWLSFNWPSYRSRIRGVAA
694387..695661                     PHAGE_Entero_phiP27_NC_003356: putative helicase; D6T62_03675; phage(gi18249883)     0.0                 ShigellaflexneriMTTPVWRNDDLEGAVIGAFFLRGADPEVMDILATLPADVFSVRAYQDIYTGICRQARVSGVIDPVLLCNEMPELAPVITDTGRKTWVKSSLEHYVAALRRNAALRNAEKTLNEALQKLRDAHTCEAAEDALKDAQNMMVTLSTGKGVIQPVHIDDVLPEVVERVECRNQGLEKSRTLMTGIDELDAKTGGMEPGDLVFIAARPSMGKTELALDIIDKVTEQGHGVLLFTMEMANIQIGERMVSAAGGMPVSRLKSVAHFEDEDWTRFSQGVGRMTGRNIWMVDQANLAIDEICATTKHHLIKYPETALVVVDYLGLIKTRTTGRHDLAVGEISKGLKGLAKSGGFPLIALSQLSRGVESRPNKRPMNSDLKNSGEIEADADIILMLYRDEVYNPDTQARGIAEINITKQRNGSLGSKRPEKYVA
complement(695665..697266)         PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_03680; phage(gi209447153)            0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(697286..697633)         PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_03685; phage(gi209447152)            4.41e-54            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWQHPKRTERPGIRI
complement(697630..698304)         PHAGE_Stx2_c_1717_NC_011357: truncated transposase; D6T62_03690; phage(gi209447151)     2.21e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHMLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
698387..698554                     PHAGE_Entero_mEp460_NC_019716: Rz lysis protein; D6T62_03695; phage(gi428782373)     2.51e-28            ShigellaflexneriSSAETSSASGMGNDATVELSPVAGRNVLGIRDGIISDQTALRMLQEYIRIQCLGG
complement(698643..699152)         DedA family protein; D6T62_03700                                                     N/A                 ShigellaflexneriMEWINALMNYFVLHPYRLWGLLFIIAFTKSTLLISAILPPASIMMATVITVSKTTLSPWEAGITVMSGAWCGTIVNYHLGIIIGHIPQLACIISSRSNTIERVRLQLQNNSVSILFTSRFIAVLRYIAPLVAGMLQLHPVKVYTVSLISAASWSALYVGSFSFVLPFFS
699350..700114                     PHAGE_Edward_GF_2_NC_026611: putative terminase small subunit; D6T62_03705; phage(gi764162248)     1.12e-16            ShigellaflexneriMAKPDWEAIESAYRAGVLSLRDIGEKYGVTEGAIRKRAKKLGWARSGGTQVCKNGTQKRKVRTSRKPAITGLTQKSTQLKTESTPDTKPIRGMRTDPPTNPFQPGNQQALKHGGYARRLLLKDEVIEDAKALTLEDELFRLRANNLVAAENIGRWLVSLEDANGDERKMLIENISAAEKAMMRNTVRIESIVGTLATVGKIFADTAYRKAATDKVSLEADRLRRDAGIDDGNGERDLNDFYSDIQTDAESGFT
700065..700748                     PHAGE_Edward_GF_2_NC_026611: putative terminase large subunit; D6T62_03710; phage(gi764162249)     3.68e-118           ShigellaflexneriMTSTLTSKPTLNPALRSFWTMRARNKVLYGGRSSSKSWDAAGIAIFLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGIDVLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIRLAP
700779..702052                     PROPHAGE_Escher_MG1655: IS2 transposase TnpB; D6T62_03715; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
702089..702214                     PHAGE_Entero_c_1_NC_019706: hypothetical protein; D6T62_03720; phage(gi428781769)     1.70e-22            ShigellaflexneriMIIRQRVKPMPSREELLKRKSFGSVNDNKYLNAMWRKGGNQ
702211..702435                     PHAGE_Entero_933W_NC_000924: hypothetical protein; D6T62_03725; phage(gi9632475)     4.03e-37            ShigellaflexneriMSKIDYQALRAKAEKATKGSYIVGHTSVNRHGNLTGVFVCQKWKGEPGGVIAECHVNCLVETDVEVVNKSWPPS
complement(702410..703578)         PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; D6T62_03730; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKVSPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRPMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
703640..703966                     PHAGE_Entero_933W_NC_000924: hypothetical protein; D6T62_03735; phage(gi9632544)     7.01e-48            ShigellaflexneriMPLHVQAYANAEFIAAFNPNVALALLDERERNLQYIKSRDQENEEIALTVGKLRVELEAAENNLIDSECHVAELEEALRDKQALLEASEKRIAELEAQTVTVKEVGDA
704039..704473                     PHAGE_Entero_933W_NC_000924: hypothetical protein; D6T62_03740; phage(gi9632471)     2.99e-20            ShigellaflexneriMNDKELIKEIKERISSLDVRDNVERRAYEIALASLTAEPVAWKVTFTQIDREYNTFTGMYSDKAEVERWVRLHKACNFRADITPLYTAQPVPVTPDAWISCSERMPEMGERQCYVLAADFKNNYPPNIGAVVRNGCCAHPAKPS
704421..705128                     PHAGE_Escher_PA2_NC_028449: antirepressor protein; D6T62_03745; phage(gi953358051)     6.79e-49            ShigellaflexneriMAQLYGTDVVRIRQNHHENKSRFVEGVHFYKVVGDELRALKHKVALNYFVKSAPNARHLILWTERGAARHAKMLETDQAWDVFEKLEDGYFNQREKVANHPQPVPQPESSLDRARAMEIALNVADRLVNMFPNLSSESKQAAVAGVFNPIVGRDVVPLPAISEHYYSATEVGQRYGISANKVGRIANTYMLKTEKYGKWFIDKSAHNDKQVETFRYNEAGVHKIEELIEGERKAA
705431..705442                     attR                                                                                 N/A                 AAATGCAAAGGA
705450..706073                     PHAGE_Entero_933W_NC_000924: hypothetical protein; D6T62_03750; phage(gi9632546)     2.47e-110           ShigellaflexneriMTSQLIPVFNGTISNETTLLVNARDLHEFLEVRRDFSTWIKNRITEYGFAVDVDYILVHQNRGIKGRGGDRRSKDYHLTLDTAKETAMVERNEKGRQIRRYFIECEKKLRSMQPAQQFTDEEIILLCYMQVQMENAQDICKRLYPILKELNSSYTSKLYDIAFETFYTVTKNRDVLLREATRLDQASALFERAKPMLKSLRARQFEF
706158..706376                     PHAGE_Entero_HK022_NC_002166: excisionase; D6T62_03755; phage(gi9634145)             3.80e-47            ShigellaflexneriMYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPVKDGREYLFHESAVKVDLNRPVTGSLLKRIRNGKKAKS
706354..707424                     PHAGE_Entero_HK106_NC_019768: integrase; D6T62_03760; phage(gi428783305)             0.0                 ShigellaflexneriMGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
715535..715546                     attR                                                                                 N/A                 GTTACATTAAGG

#### region 4 ####
714807..715504                     PHAGE_Entero_P1_NC_005856: InsA; D6T62_03795; phage(gi46401643)                      5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSIFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
715677..716630                     PHAGE_Burkho_phi1026b_NC_005284: gp58; D6T62_03800; phage(gi38707948)                1.14e-08            ShigellaflexneriMKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIS
complement(716671..717666)         6-phosphogluconolactonase; D6T62_03805                                               N/A                 ShigellaflexneriMKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESVLPGSPTHISTDHQGQFVFVASYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTATLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDYSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
complement(717926..718030)         PHAGE_Entero_P88_NC_026014: DNA invertase; D6T62_03810; phage(gi744692743)           1.82e-06            ShigellaflexneriTNDQNTDLQRNAFICAGSELIVERMGSWPEVVMA
complement(718048..718745)         PHAGE_Entero_P1_NC_005856: InsA; D6T62_03815; phage(gi46401643)                      3.30e-56            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSARSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
718786..718923                     PHAGE_Entero_mEp460_NC_019716: tail assembly protein; D6T62_03820; phage(gi428782333)     2.47e-20            ShigellaflexneriVGSITAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
718984..722463                     PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; D6T62_03825; phage(gi148609400)     0.0                 ShigellaflexneriMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLERWDTPKVVKGVSFLLRLTVAADDGSERLVSTGRTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDYAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKTLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTTNKNCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLVVVMKKATAGITIS
722531..723130                     PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; D6T62_03830; phage(gi148609401)     8.11e-133           ShigellaflexneriMRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
723194..724609                     PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; D6T62_03835; phage(gi18249920)     3.88e-77            ShigellaflexneriMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPWYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLCIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
724560..725183                     PHAGE_Escher_Av_05_NC_025830: tail fiber protein; D6T62_03840; phage(gi730985066)     1.34e-41            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVK
725183..725362                     PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; D6T62_03845; phage(gi849255281)     9.25e-07            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(725363..727126)         PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; D6T62_03850; phage(gi169257209)     2.72e-09            ShigellaflexneriMKPVHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGAATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPPSLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPDLPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRLPELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
727218..727304                     PROPHAGE_Escher_CFT073: transposase; D6T62_03855; phage(gi26246249)                  1.98e-10            ShigellaflexneriQEELLGMWLAENEGVKFWLNVLTELKKRG
complement(727314..727394)         PHAGE_Entero_IME10_NC_019501: integrase; D6T62_03860; phage(gi422934296)             1.80e-09            ShigellaflexneriIYNHAQYLDKRREMMLWWADYWLDEKV
727492..727525                     attL                                                                                 N/A                 GTTGATTCATAGTGACTGGATATGTTGTGTTTTG
727601..728534                     IS3 family transposase; D6T62_03865                                                  N/A                 ShigellaflexneriSAFFAKAEFDRLWKKCHCWISCVSSTGSDRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVCVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATATVSSWQNDLTSCGWLILLTSAHGGARLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTNVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
complement(728576..728878)         PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; D6T62_03870; phage(gi849122277)     4.28e-64            ShigellaflexneriMTDITANVIVSMPSQLFTMARSFKAVANGKIYIGKIDTDPVNPENQIQVYVENEDGSHVPVSQPIVINAAGYPVYNGQIAKFVTEQGHSMAVYDAYGSQQF
complement(729014..730855)         PHAGE_Salmon_ST160_NC_014900: Gp16; D6T62_03875; phage(gi318065961)                  0.0                 ShigellaflexneriMKVTANGKTFTFPDGTSTEDIGTAIDEYFAGQAVQQQTVNQANNAPTREEPSLMQQAGDWLTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPYAQAGETIGGYLVPGVGTAGSMAIGSLAEAANQKGDFAQNAAKNAGVNLAAQGVLSAAAKGIGRGITAIKGDIAPEVAKKIATSESMGVTPMTSDVIPPKNAFTRGLTQDAEGALLGTGSKRAEQYATRSKLVSNYFDRFGEYNPDDVVKSLTTTLRGRKDAAGAVINDVTNKMGNAAVDTTNTMNALNTAIARQERLGTSANQSLLTSLRNLREELANPATDLDVTFDLLRQHRTAFRSNVQGDAMVFPNQAKAATNMVENAMSKDLRNAVAKNLGASDAAKYLKANSDYANVYNKVLNKNIANKLNKASSEASPELINTVVLSRKPSDVKRIWSALDDKGKDAMRAAYVSKIAEKAGDSPAKFITEVNKLKSQSGGEIYNTIFSGKHMKELDALHEVLQQTARSDTANVVTQTGQSQANRIRTIGATATLGVSMGLEAGFGAMMRLYESKAARNMLLRLANTKAGTAAYERALNNAANAIRPILSSQITAEQ
complement(730855..732261)         PHAGE_Entero_IME10_NC_019501: gp20; D6T62_03880; phage(gi422934289)                  1.98e-123           ShigellaflexneriMATWQGSNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQENQAQRQKEFQQAYANAYASGDRGALRQLANQYPDQIESVRKGMGFIDEDQRNSIGTLAAGARLAASSPEAMQSWLQNNANELARVGVDPNSVAQMYQQNPSGFGEFVDHLGMAALGPIDYFNVQDKMAGREIDRGRLAETIRSNQAGEALQARGQNLSYQSAMTGHNIAAQRLALDQQEFGFKMQQAQEKAQQLISEAPKLSVNMEKGIETAVNNATASSNSANSMSALAQQFRAEKPTTGLFGNAQNMFAKLTGSDTTLRDLRIRQNALVNSQVLKFLPPGPATDKDVEIVRQGAPTDMDNPETVARWLDAMANLERRNAQFNEFKAEWMSANGNPGQSRNGGQILGLDVKKGESLGSAVKRYMSMNTDAAPAQDSTPSGEPRNQVGSYTSKSGIQFTVE
complement(732271..732852)         PHAGE_Entero_IME10_NC_019501: DNA transfer protein; D6T62_03885; phage(gi422934288)     7.15e-127           ShigellaflexneriSQKYAADLQNQQWQTIMKNLTPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSQQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAGIGAGIGLLGSLF
complement(732892..734105)         PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; D6T62_03890; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVVFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
734272..734595                     PHAGE_Salmon_vB_SalM_SJ2_NC_023856: tail fiber protein; D6T62_03895; phage(gi602259683)     1.62e-06            ShigellaflexneriMIGVKQPLPKAVLRTQHDKNKEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLLIPCGVNIRGVGKASQLRAKSGLTGSVLRLSY
complement(734612..735313)         PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; D6T62_03900; phage(gi557307573)      1.32e-31            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
735314..736513                     PHAGE_Shigel_Sf6_NC_005344: gene 14 protein; D6T62_03905; phage(gi41057292)          0.0                 ShigellaflexneriASTLKSPSYTKSVSWQHYLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDSVIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHFSRGNYSADESFGIRIQPQTYAWSSEAVRSEAIILDSETMCIGFKNAVYVHDCLDLHMEQLDLDYCGSTGVVIENVNGGFSFSNSWIAADADGTEQFTGIYFRTPTSTQSHKIVSGVHINTANKNTAANNQSIAIEQSAIFVFVSGCTLTGDEWAVNIVDINECVSFDKCIFNKPLRYLRSGGVSVTDCYLAGITEVQKPEGRYNTYRGCSGVPSVNGIINVPVAVGATSGSAAIPNPGNLTYRVRSLFGDPASSGDKVSVSVVTINVTRPSPVGVALPSMVEYLAI
complement(736547..737548)         PHAGE_Shigel_Sf6_NC_005344: gene 15 protein; D6T62_03910; phage(gi41057293)          0.0                 ShigellaflexneriMHKSNCFDTARLVAAMMVLVSHHYALSGQPEPYLFGFESAGGIAVIIFFSISGYLISKSAIRSDSFIDFMAKRARRIFPALVPCSILTYFLFGWILNDFSAEYFSHDIVRKTISSIFMSQAPDADITSHLIHAGINGSLWTLPLEFLCYIITGVAVALLKNGKAFIVILLVFVSLSLIGSVSENRDVMFSIPLWLYPLRGLAFFFGATMAMYEKSWNVSNVKITVVSLLAMYAYASYGKGIDYTMTCYILVSFSTIAICTSVGDPLVKGRFDYSYGVYIYAFPVQQVVINTLHMGFYPSMLLSAVTVLFLSHLSWNLVEKRFLTRSSPKLSLD
complement(737704..737787)         PHAGE_Entero_IME10_NC_019501: integrase; D6T62_03915; phage(gi422934296)             1.52e-11            ShigellaflexneriIYNHAKYLDKRREMMQWWADWLDEKVR
737885..737918                     attR                                                                                 N/A                 GTTGATTCATAGTGACTGGATATGTTGTGTTTTG
complement(738102..738572)         kinase inhibitor; D6T62_03920                                                        N/A                 ShigellaflexneriMKHFFANNGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDVERIDVDEGGSGAMVGFNVHFHSLASASITAMFS
complement(738550..739839)         PHAGE_Mycoba_Alice_NC_028986: gp185; D6T62_03925; phage(gi971763384)                 4.15e-06            ShigellaflexneriMTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKTQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ

#### region 5 ####
763964..766114                     PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; D6T62_04060; phage(gi100158)     2.90e-26            ShigellaflexneriMALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVTRREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDELLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEVQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFEPSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR
766142..767104                     DNA-binding protein YbiB; D6T62_04065                                                N/A                 ShigellaflexneriMDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALCLSSVSHPEYIGRVAKFFSDIGGWALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDPAGSELLPQAKDPETTAQWTERCLAGSEAIPESLKIQMACCLVATGEAATISDGLARVNQAF
767245..768330                     malate/lactate/ureidoglycolate dehydrogenase; D6T62_04070                            N/A                 ShigellaflexneriMESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHKETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGSWQAICDAARQIGMSEETLQAFCQQLAS
complement(768559..768819)         PHAGE_Erwini_vB_EamM_Kwan_NC_031010: short tail fibers; D6T62_04075; phage(gi100183)     1.14e-07            ShigellaflexneriMKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSGTAVIYK
complement(769084..769350)         PHAGE_Cronob_vB_CsaP_GAP52_NC_019402: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; D6T62_04080; phage(gi414087569)     2.95e-23            ShigellaflexneriMASAWANDDAVNEQINSTIEDAIARARGEIPRGESLYECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR
complement(769424..770101)         PHAGE_Synech_S_PM2_NC_006820: PiuC; D6T62_04085; phage(gi58533039)                   5.10e-24            ShigellaflexneriMMYHIPGVLSPQDVAHFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSALYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENEEILSLLNLYHNLLREWSEI
complement(770143..772152)         PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; D6T62_04090; phage(gi100064)      5.63e-11            ShigellaflexneriSLTDRHYPGVGAFFAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVSFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSAGAAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTSRTANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSRIHPGGLTRNGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPAGVAKGSPVTTVDTAKSGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQKKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQATDDISVGAGARYIGSIHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLNVYNLFDTDYVASINKSGYRYHPGEPRTFLLTANMHF
772217..773545                     PROPHAGE_Escher_MG1655: IS4 transposase; D6T62_04095; phage(gi16132099)              0.0                 ShigellaflexneriMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRMFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSNRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA
complement(773534..773863)         TonB-dependent receptor; D6T62_04100                                                 N/A                 ShigellaflexneriMENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQANADDTLVVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGNASQLSN
complement(774128..774532)         PHAGE_Erwini_vB_EamM_EarlPhillipIV_NC_031007: chaperone for long tail fiber formation; D6T62_04105; phage(gi100168)     5.80e-09            ShigellaflexneriMHVIDLYYFVKIYRSKNKHISVNFLRHLHRAGDLHLSGTTRCIYEDVIMKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK

#### region 6 ####
924877..926205                     PROPHAGE_Escher_MG1655: IS4 transposase; D6T62_04815; phage(gi16132099)              0.0                 ShigellaflexneriMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSNRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLSSMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA
926310..926375                     MerR family DNA-binding transcriptional regulator; D6T62_04820                       N/A                 ShigellaflexneriMALYTIGEVALLCDINPVTLRA
926603..926851                     PHAGE_Entero_cdtI_NC_009514: hypothetical protein; D6T62_04825; phage(gi148609412)     2.53e-53            ShigellaflexneriMRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(926967..927236)         PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; D6T62_04830; phage(gi428782810)     1.79e-22            ShigellaflexneriMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAKKYRVLLNRVDTSTAPDIEWPEEPDTM
927335..927961                     class I SAM-dependent methyltransferase; D6T62_04835                                 N/A                 ShigellaflexneriMYTLLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
928277..929920                     PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; D6T62_04840; phage(gi169257209)     1.53e-05            ShigellaflexneriMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPEFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(929921..930100)         PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; D6T62_04845; phage(gi849255281)     2.65e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(930100..930723)         PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_04850; phage(gi18249921)     3.72e-101           ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRTWNAGSSSVARLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
complement(930674..930993)         PHAGE_Escher_Av_05_NC_025830: tail fiber protein; D6T62_04855; phage(gi730985065)     1.72e-05            ShigellaflexneriYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGSHTEAHDWDRWGFQCPVLPPERIHPHNFSLRDVQSIHYRGHIAPCPGCRMHMSLAQCPGFLFAHRGA
complement(931009..931706)         PHAGE_Entero_P1_NC_005856: InsA; D6T62_04860; phage(gi46401643)                      5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(931832..933781)         PHAGE_Entero_phiP27_NC_003356: putative tail protein; D6T62_04865; phage(gi18249911)     0.0                 ShigellaflexneriMADSFQLKAIITAVDKVSAPLKGMQRQLKGFKKEFASLSLGAAGAGTAVLGALALPVKSAIALESKMADVRKVVDGLDTPEAFKAMTEQVRDLSTELPMSAEGIAEIVAAGGQAGIARDELMQFTDDAVKMGVAFDATAEESGQMMAQWRTAFKLTQGEVAGLADKINYLGNTGPASAKKISDVVTRIGPLGSVAGVASGEIAAMGATIAGMGVESEIAATGIKNFMLSLTARDSATKSQKKVLRSLRISPKKLAADMQKDARGAMLHVLDSLAKVPKEKQAAVLKALFGKESLGAIAPLLTNLDLLRTNFNRVADAQQYGGSMQKEYAARAATTENQLLLLQNQINAISSTLGETFLPSLNEGIKEMKPFLEEVRTFVRENPEVVKTIAKTGAALLTMGVAIGTLTRITKIMGSVMNMTPAKGLIALLVGGAYLIIDNWETVGPVVKKVWQEVDQVVRAMGGWEQAVKTIATVSALYIGVKAVASIRAATVAQNQWTTAAGKTGLKLKGLGKISLIGGLLELGMMAQEFEKEHPWLVKNFVADALNSGFGLNDKFDEWGKQFHDFVYDMTGWQMPRGDGYLSPDKRYTPNVSLERNQLLSLASSPATRSELKVTFDNAPPGMRVIDLPKTGDPFMKITHDVGYSPFKR
complement(933866..934196)         PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_04870; phage(gi18249910)     3.67e-62            ShigellaflexneriMNVTEIVLKKPVTAHNEMLHVLELREPTYDEIEALGFPFIISGEGSIKLDSVALKYIPLLAGIPRSSAAQMAKLDIFKTSMQILRFFTQSETGSTSGKRLYNVAWFWKLA
complement(934202..934558)         PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_04875; phage(gi18249909)     7.13e-84            ShigellaflexneriMAKIAGTCFFKVDGQQLSLTGGIEVPMNTNVRDDIVGMAGDVDYKETWRSPYVKGTFKVPKNFPVDKITTSDQMTITAELANGMVYVLSAAWLHGEANHNAEEGTADLEFHGEEGGYQ
complement(934558..936054)         PHAGE_Entero_phiP27_NC_003356: putative sheath protein; D6T62_04880; phage(gi18249908)     0.0                 ShigellaflexneriMTISFNTVPSNTLVPLFYAEMNNSAANTAVTSAPALLIGHASNDAAIEVNSLVLMPSADYARQICGAGSQLARMVEVYRQTDPFGELYVIAVPEARGAAATVRVTVAGEAEESGTLSLYVGRSRVQVPVVNGDDATAVATAIKEAVNGVITLPFTASSDAGVVTLTARHKGLYGNELPVCLNYYGSGGGEILPAGLRVVTEVGAAGSGAPDLTAAVAAMGDEAFDFIGLPFNDAASINMMMTEMNDSSGRWSYARQLYGHVYTAKLGTLSELVGAGDMHNQQHITLAGYEKETQSPVDELVASRLAREAVFIRNDPARPTQTGELVGMLPAPKGKRFIMTEQQTLLSHGVATAYVEGGTLQIQRSVTTYKKNAYGVADNSYLDSETLHTSAHVLRKLKSVITSKYGRHKLANDGTRFGPGQAIVTPAVIKGELLATYRQMERAGIVENYDLFKQYLIVERDADNPNRLNTLFPPDYVNQLRVFAVVNQFRLQYSEESA
complement(936051..936212)         PHAGE_Entero_SfV_NC_003444: hypothetical protein; D6T62_04885; phage(gi19549000)     3.79e-21            ShigellaflexneriMFVKPLKGRSVPDPARGDLLPSEGRNVEESSYWFRRIAAGDVVRVKQDKAKKS
complement(936222..936785)         PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_04890; phage(gi18249907)     1.70e-134           ShigellaflexneriMKLTTIIAALRERCPRFEERVGGAAQFKAIPDAGKLRLPAAYVVPSDDAPGEQKSQTDYWQDLTEGFSVIVVLSNERDEKGQWAAYDAVHDVRRELWKALLGWMPDPQGGEIVYVGGTLLDLNRYELYYQFDFTAKYEITEEDTRQAEDVNALPDLSLLSIDVDYIDPGTGPDGDIEHHLEMRFPQN
complement(936782..937306)         PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_04895; phage(gi18249906)     8.85e-124           ShigellaflexneriMNQTAFLHVDFKQPEELEFNRARLRRAFVQIGRVYMRDARRLVIKRGRSGPGENPGYQTGRLARSIGYYVPKKTTRRPGLMVKISPDQKNGQGNRRFPEGAPYYPAFLYYGVRHSAYGMDKKDKRQKKHHSSTFRLAPRNNFMADVIERQRHWTQELLSSELQRSLRPVKRKHK
complement(937272..937688)         PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; D6T62_04900; phage(gi23505454)     3.16e-61            ShigellaflexneriMKIRQSQTSATYLLPDPGELNRRIKIRLRVDEPTADFGTEPTYPESFDVWAKVAQPGAAAYQGSVQTENIVTHYFTIRFRHDITADHEVVYYGQEYRIRRIRDLNGQRRFLLLECEELRTARRRGECHESDSIFTRRL
complement(937685..938008)         PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_04905; phage(gi18249905)     2.52e-73            ShigellaflexneriMLLKEEEIKSHLRLDDGLYSDGDFLKLLAQAVQKKTETYLNRKLYAPEETIPEDDPDGMHLTDDVRLAMLMLVSHFYENRSTITDVEKLETPMSFRWLAGPYRIVPL
complement(938053..939819)         PHAGE_Entero_phiP27_NC_003356: putative major capsid protein; D6T62_04910; phage(gi18249904)     0.0                 ShigellaflexneriMAVKPVSRRITPMQTKQRLDVPLSLKSVSDSGEFEGHGSVFGVKDSHDDVVMSGAFAASLRAWSDRKALPALLWQHRMDEPIGVYTEMKEDDVGLYVRGRLLIDDDPLAKRAHAHMKAGSLTGLSIGYVLKDWEYDRSKEAFLLKEIDLWEVSLVTFPSNDEARISDVKNALARGEIPEQKKIERVLRDVGLSRTQAKAFMAGGYGALSLRDAEDVGSALNGEVETLNGKLTELENLKSDLEAELAEVKRPAGGTQNKVAGEHKEAFIGFMRKGREDGLRELERKALQVGNDEDGGYAIPEELDRTILTLLKDEVVMRQEATVITLSGSDYKKLVNLGGTTSGWVGETEARPETATSKLGLIEPFMGEIYGNPQATQKMLDDAFFNVEDWINSELALEFAEQEEIAFTSGDGSKKPKGFLAYESTDEDDKTRAFGKLQHIASGAASGVTADAIIKLIYTLRKAHRSGAKFMMNNSSLFAIRLLKDNDGNYLWRPGIELGQPSSLAGYGIVENEQMPDIAADAKAIAFGNFKRGYTIVDRIGTRILRDPYTNKPFVGFYTTKRTGGMLVDSQAIKLMKIGAATRQKAAA
complement(939761..941002)         PHAGE_Entero_phiP27_NC_003356: putative portal protein; D6T62_04915; phage(gi18249902)     0.0                 ShigellaflexneriMFFQGLFQRKNNTPVTTPGMLAEELGLSYDTYTGKRISSQRAMRLTAVYSCVRVLAESVGMLPCSLYKISGTLKTRAVDERLHKLISAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKALGEVVELLPIDPGCVEPKLNSQWQPVYQVTFPDGSVDVLTQDEIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYERMKRDFEERHLGLGNAHRPMILEMGLDWKPVALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTKPSDGSKAGKQKDNANADETTS
complement(941002..941184)         PHAGE_Entero_phiP27_NC_003356: putative integral membrane protein; D6T62_04920; phage(gi18249901)     1.97e-18            ShigellaflexneriMFLIILTPLVGVLGALLLSYGTWLIYPPAGFVVAGALCLCWSWLVARYLDRGHRVASGGE
complement(941196..942953)         PHAGE_Entero_phiP27_NC_003356: putative terminase; D6T62_04925; phage(gi18249900)     7.48e-114           ShigellaflexneriMAKVADGIRYAERVVAGEIVAGEFVRLACQRFLDDLKYGEERGIYFSEPRAQHILNFYKFVPHVKGALAGQPIELMDWHVFILINIFGFVIPLVNEETGEVVMRSDGSGRPVMVRRFRTAYNEVARKNAKSTLSAGIGLYMTGADGEGGAEVYSAATTRDQARIVFEDAKNMVRKARSTLGRLFDFNKLAIYQEQSASKFEPLSSDANNLDGLNIHCAIIDELHAHKTRDVWDVLETATGARLQSLLFGITTAGFNKEGICYEQRDYAIKVLRGYNSDVEGAVKDDSYFAIIYTLDEGDDPFDETVWQKANPGLGICKRWDDLRRLAKKAKEQVSARVNFFTKHMNVWVTAESAWMDMIKWEKCEYIAPRHELKTYPMWVGVDLAHKIDICAAAKLWRTDNGHVHADFKFWLPEGRLERCSRQQAELYRKWAEMDKLILTDGDVIDHAQIKSDLLEWIGGENLRELGFDPWSAMQFSLALAEEGIPLVEVPQTVRNLSEAMKETESLVYAGRFHHSNHPVMNWMMSNVTVKPDKNDNIFPNKSTPEAKIDGPVAMFTAMSRMLVNGGEPEPDLSEHLVSVGIRSL
complement(942953..943435)         PHAGE_Entero_mEp235_NC_019708: terminase small subunit; D6T62_04930; phage(gi428781811)     2.48e-84            ShigellaflexneriMSGPPKTPPRLHLIRGNPSKRPVKDAKKTAKKDEKGLPKIPQHLGAQGKYWFRRMAEELNAEGIISQLDARALELLVEAYTEYRHHCETLDVEGYTYRTETQNGDVLIKAHPAAAMKADAWKRIRAMLAEFGMSPASRAKVNIAGPDDVDPLAELLKARD
complement(943583..943933)         PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_04935; phage(gi18249898)     1.36e-79            ShigellaflexneriMPSLIPRACRKRGCAGTTTDSSGYCDKHRGEGWVQHQRGLSRHQRGYGSKWTVIRARILKRDKGLCQLCLRVGVVSEAKTVDHIIPKAHGGTDADSNLQSLCWPCHKAKTARERIR
complement(943976..944440)         PHAGE_Entero_lambda_NC_001416: cell lysis protein; D6T62_04940; phage(gi9626310)     4.38e-96            ShigellaflexneriMSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNARELKLANATITDMQQRQRDVNALDAKYTKELADAKAENETLRADVAAGRRRLHIKAVCQSVREATTASGVDNATSPRLADTAERDYFTLRERLMTMQMQLEGAQEYIRTQCIK
complement(944437..944958)         PHAGE_Stx2_c_1717_NC_011357: phage-related lysozyme; D6T62_04945; phage(gi209447172)     8.36e-115           ShigellaflexneriMLTLRTSRGAYSLRKAVAVAIGGGAIAIASVLITGPGGNDGLEGVSYIPYKDIVGVWTVCHGHTGKDIMPGKTYTEAECKALLNKDLVTVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVCLWGQQ
complement(944958..945749)         PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_04950; phage(gi209447153)            1.35e-118           ShigellaflexneriTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSVDRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(945792..946948)         PROPHAGE_Escher_CFT073: transposase insF; D6T62_04955; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMAKELTGKALFMALRSQRPPAGLIHHSERGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(947014..947826)         PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_04960; phage(gi209447153)            2.02e-67            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQASLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDT
complement(947846..948193)         PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_04965; phage(gi209447152)            4.41e-54            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWQHPKRTERPGIRI
complement(948190..948864)         PHAGE_Stx2_c_1717_NC_011357: truncated transposase; D6T62_04970; phage(gi209447151)     1.97e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
complement(948963..949178)         PHAGE_Entero_VT2phi_272_NC_028656: holin; D6T62_04975; phage(gi966197762)            4.88e-35            ShigellaflexneriMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGSLVLGFLTYLTNLYFKIREDKRKAARGE
complement(949471..949545)         tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
complement(949549..949624)         tRNA                                                                                 N/A                 GCCGACTTGGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
complement(949627..949703)         tRNA                                                                                 N/A                 CCGCCACTAGCTCATCAGGAAAGAGCGTCAACCCTTTAAGTTGAGTGTGCGAGGTTCGAGTCCCCGGTGGCGGTCCA
complement(949705..949780)         tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
complement(949823..949944)         antiterminator; D6T62_05000                                                          N/A                 ShigellaflexneriLPIFYVMAKANKTRPQAGFLCHLSRIDMVNALVEEIRVIFGA
complement(949974..950690)         PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; D6T62_05005; phage(gi169257244)     3.05e-80            ShigellaflexneriMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGTSIPLVSPVEFSTSSWRRAVLSLEEHHKAWLLWCYSGSICWEYQIAITQWAWNEFNAQSGTRKIAGKTQERLKKLIWLAAQAVKAELFGGEGYEYQVGGEGYEYQELAFTGGSDNKLVQNIYSSLDCNETHFSPTGGFIVCNENTFKKKTAFSKQSVAKVD
complement(950687..951052)         PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; D6T62_05010; phage(gi985761276)     2.35e-51            ShigellaflexneriMTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLNLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVRGQLVPGGRLGIKITELGCA
complement(951053..952111)         PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; D6T62_05015; phage(gi557307571)     1.73e-107           ShigellaflexneriVRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHMKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPPQEETVVSIAVDPESPAQYLQRQKPQREEMPVYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTKADDLFVIPLCRKCHNELHAGVKDFEEKHGSQLLLLIRFLMHARNSGVLKWKA
complement(952113..952391)         PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; D6T62_05020; phage(gi401817580)     5.61e-14            ShigellaflexneriMAHDTKFYNSDNSAAPASRHGRRSHAFKSDWYQHDSCTEEQAEWLIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR
952332..952584                     hypothetical protein; D6T62_05025                                                    N/A                 ShigellaflexneriVPAGRGGRVIRIVKFGIVRHLFSLLAQQVPVVQADGWIVNQNDQKKQNPPKRVKCGCVEDAHISGGEGFLPRRVSYSSGSAVA
complement(952559..952771)         PHAGE_Entero_933W_NC_000924: protein MokW; D6T62_05030; phage(gi9632542)             5.12e-41            ShigellaflexneriMLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
952816..952999                     hypothetical protein; D6T62_05035                                                    N/A                 ShigellaflexneriMLTGAFLYLPFGVHADRPQAPAVILLNDFPANRFCPAQISNTNSVRCIYRQYSMHMA
complement(952974..953153)         hypothetical protein; D6T62_05040                                                    N/A                 ShigellaflexneriMKNALQFLFVAFWLFASCMPIIFTARYMEKIDVLILMFGHINALFLGVFMAVMCIEYWR
complement(953366..953782)         PHAGE_Escher_Av_05_NC_025830: hypothetical protein; D6T62_05045; phage(gi730985110)     4.05e-32            ShigellaflexneriMTELTKEQLIEEAKLKIAITKCHPNSGMARVEGELFKIARASLEAEPIAWRYRYVKKGVMDSQGELWVGDWKYVPKKEDCNDRPNYEIQALFTAPPVPVTSEELVKAVHFYEQLKRENPPASGNQINGLTMSVKRPAN
953853..954554                     PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; D6T62_05050; phage(gi557307573)      1.32e-31            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
954559..954570                     attL                                                                                 N/A                 GAGTCATTACCC
954584..954898                     PHAGE_Entero_mEp460_NC_019716: putative exonuclease; D6T62_05055; phage(gi428782342)     1.38e-40            ShigellaflexneriMLQLREFIDENSGEFFVQVWGNGANFDNTILRRSYERQGIPCPWRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALDDARYQAKYVSAIWQKLIPSQADF
954957..955160                     PHAGE_Pectob_ZF40_NC_019522: hypothetical protein; D6T62_05060; phage(gi422936643)     1.36e-06            ShigellaflexneriMSSLFLTEDELLILTGCKYASHQRKWLMENGLPFYTNRSGKPIVSRDLFTCNKTLPPREVEPNFGAI
955160..956185                     PHAGE_Salmon_ST64B_NC_004313: Integrase protein; D6T62_05065; phage(gi23505472)      7.15e-130           ShigellaflexneriMGRRRKNPEHEKLPPNVYPNKYSYVWKPTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK
complement(956238..956327)         tRNA                                                                                 N/A                 GGAGAGATGCCGGAGCGGCTGAACGGACCGGTCTCGAAAACCGGAGTGGGGGCAACTCCACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
956421..957218                     protein MtfA; D6T62_05075                                                            N/A                 ShigellaflexneriMIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVALAERFLQQKRLVPLQGFELNSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFISLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH
957319..957394                     tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
957556..958818                     PROPHAGE_Escher_CFT073: prophage P4 integrase; D6T62_05085; phage(gi26248270)        0.0                 ShigellaflexneriMSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHLELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNKFIP
complement(958925..960093)         PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; D6T62_05090; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSGQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
960140..960490                     serine transporter; D6T62_05095                                                      N/A                 ShigellaflexneriVAKFSVPLQVLGALWVRNGMEESAEFEQQQHNQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFLNIGLLLGGLSCLTIPCFAWLADRFGRR
960557..961713                     PROPHAGE_Escher_CFT073: transposase insF; D6T62_05100; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
964263..964274                     attR                                                                                 N/A                 GAGTCATTACCC

#### region 7 ####
963516..963528                     attL                                                                                 N/A                 CCAACTTACTGAT
complement(974311..974643)         integrase; D6T62_05190                                                               N/A                 ShigellaflexneriIVDLFSLLRDNHTQISHIAGDLNMKTSPWNKDRTIGQKRPLQISHIWGIRIRLELEGKTRDLALFNMALDSKLRGCDLVKLKVSDAAYGSSVSSRATVLQQKTGSPVQFEM
complement(974711..975408)         PHAGE_Entero_P1_NC_005856: InsA; D6T62_05195; phage(gi46401643)                      5.18e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRLRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWSTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
975604..976047                     hypothetical protein; D6T62_05200                                                    N/A                 ShigellaflexneriMNPSDAIEAIEKPLSSLPYPISRHILEHLRKLPRHEPVPGIMGKSGAGKSSLCNALFQGEVTPVSALMTVLPGHAAIPLMTRLQDELRTESVRTQTREQFTGAVDRIFDTAESVCVASVVRTALRAVRDTVVSVARAVWNWIFFLTR
976257..977441                     hypothetical protein; D6T62_05205                                                    N/A                 ShigellaflexneriMHEKNITLLCDEADRLLQLSINLLRQMVDEPDVLSDGKNENGQLFDKQKALKRIKELEGEQIKTARREMVLAVVGTMKAGKSTTINAIVGQEILPNRNRPMTSVPTLIRHVPGKTEPVLHLEHIQPVRNLLITLQEKLATPAGQQVAQTLQQTGDTRELLDILTDDGWLKNEYHGEEGIFTGLASLNDLVRLAAAMGSEFPFDEYAEVQKLPVIDVEFSHLVGMDECQGTLTLVDTPGPNEAGQPQMEVMMRDQLQKASAVLAVMDYTQMNSKADEEVRKELNAIADVSVGRLFVLVNKFDEKDRNGDGADAVCQKVPAMLNSDVLPASRVYPGSSRQAYLANRALHELRKNGTLPVDEAVDDFVREAFGRMKKDYVCKDSELATEGATDLWE
complement(977482..978638)         PROPHAGE_Escher_CFT073: transposase insF; D6T62_05210; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
978702..979382                     PROPHAGE_Escher_CFT073: transposase insF; D6T62_05215; phage(gi26249410)             2.08e-168           ShigellaflexneriTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFIALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
979387..979398                     attL                                                                                 N/A                 AGAACAAATGGT
979672..980627                     hypothetical protein; D6T62_05220                                                    N/A                 ShigellaflexneriMAMEEIDARTRELLTGSAPHWKRSMTISEAVNAKNSKCWRKKIQRSPGRETHSLSFTIFSEPEISMTGCGTLIRTAPKNSVIAGKPLNRKSNRPPACTERLKHSSGLSWRKSSAGLKQVFVARPCTPQKTLPVASIPAWRMRALPKSVFRQSVSYKPGSRKQIVRLWRKERRPSPVAVGSVVYGERFVERLAPVTGAGKPIKRMAAVLSISTPSGRKLCHPGHISGSCRHPLSRILTSPSARKSMPFSAHSGRKLNNCVTRFRALKIINAISRHRNGLPGDFRHMKGFLSSLLTVRRGKSWRQCCGA
980624..981388                     chemotaxis protein; D6T62_05225                                                      N/A                 ShigellaflexneriMTSPFIQQIADNRVCQVLTCLPEKFVVDFANGIDVAQEHIRTAGERTFFRRLKEGLTGEGAARQNAINASVAQGVEASLRWLTELTTSLATTNYAITRVNDRVSSLVSDTARLAHYSADTREQLLILADQVHHKLNHLEEKLHRVDQVQRAQLHLEQIFSWWSAGRYASFSPAGRCYVALEELRWGAFGDVIRQGETGQVNQLLDILRHKALTQMAQESGGSATVRLNTLDWLGGQGREQADNEWHDAINWLGD
981410..981529                     hypothetical protein; D6T62_05230                                                    N/A                 ShigellaflexneriMIWSTTQAAEHLPVRMPRLCSAERLSESMVDEIFQKGAA
981526..982596                     PHAGE_Rhodot_RM378_NC_004735: hypothetical protein; D6T62_05235; phage(gi30044012)     5.26e-09            ShigellaflexneriMSTEMKTGLVLSGGGAVGAYQAGVVKALAECDTQISMVSGASIGAFNGAIIATSPDLSEAAVRLEALWDHLGNNQVLSVNRLVYFSLLKKLFQAMNLCQIPGRAGALLTTLLRHISILNGFDNLMAQPLLSDEPLTALLDHYLDTDALADGLPLYVSLYPTEGGMQDIIDCIRAELGAGTTKNAVFQHIQSLPRGQQKEALLASAALPLLFRPREVQGTMFGDGGMGGWRNMQGNTPVTPLVDAGCNMVIVTHLSDGSLWDRQAFPDTTILEIRPRKRLKYAGDGDNSGGLLSFTLAHTDAWRQQGYEDTMLTMEHIRKPLAARQVLSRSETVLQKSLEITEEADLALRNAMARIK
982732..983409                     hypothetical protein; D6T62_05240                                                    N/A                 ShigellaflexneriMQLPVKLLMSLISLVSVIARAGKYKNYIRDEIKYWRYTSYKGGKFPEGFTDEKFSSAIYNGRIFTMKRLHTLMLFLAVLFTGFNVEAASVKQALSCDPNARAEQPGACPTTYELYEGDAAYKAALDKALKPVGLSGMFGKGGYMDGPGGNVTPVTINGTVWLQGDGCKANTCGWDFIVTLYNPKTHEVVGYRYFGLDDPAYLVWFGEIGVHEFAYLVKNYVAAVN
complement(983587..984800)         PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; D6T62_05245; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLGKLREQYGGGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(984966..985295)         DUF496 family protein; D6T62_05250                                                   N/A                 ShigellaflexneriMETTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK
985836..986510                     PHAGE_Stx2_c_1717_NC_011357: truncated transposase; D6T62_05255; phage(gi209447151)     2.12e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFALDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
986507..986854                     PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_05260; phage(gi209447152)            4.41e-54            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWQHPKRTERPGIRI
986874..988475                     PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_05265; phage(gi209447153)            0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
988509..988895                     PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; D6T62_05270; phage(gi41057343)     2.29e-91            ShigellaflexneriSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
988901..988966                     PHAGE_Entero_Sf101_NC_027398: hypothetical protein; D6T62_05275; phage(gi849122281)     8.79e-09            ShigellaflexneriSYLREAVEGWILNGGVNQKCS
complement(988947..989240)         PHAGE_Stx2_c_1717_NC_011357: integrase; D6T62_05280; phage(gi209447127)              8.43e-66            ShigellaflexneriPGEDINKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTLVTRLSEMNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKAYELHADKLFWHIRSISD
complement(989272..990873)         PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_05285; phage(gi209447153)            0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(990893..991240)         PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_05290; phage(gi209447152)            4.41e-54            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWQHPKRTERPGIRI
complement(991237..991911)         PHAGE_Stx2_c_1717_NC_011357: truncated transposase; D6T62_05295; phage(gi209447151)     2.25e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
complement(991994..992887)         PHAGE_Stx2_c_1717_NC_011357: integrase; D6T62_05300; phage(gi209447127)              0.0                 ShigellaflexneriMAISDTKLRTIYGKPYSGPQEVADADGLSVRISPKGGIQFQYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQCLDYWFDNYVSTTLREKAQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEEKDNPRRARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERSRASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFEQIKPFLEKAMTMYNDVLFPGE
993023..994296                     PROPHAGE_Escher_MG1655: IS2 transposase TnpB; D6T62_05305; phage(gi16132094)         0.0                 ShigellaflexneriMIDLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
997254..997265                     attR                                                                                 N/A                 AGAACAAATGGT
1001129..1001141                   attR                                                                                 N/A                 CCAACTTACTGAT

#### region 8 ####
1100267..1101423                   PROPHAGE_Escher_CFT073: transposase insF; D6T62_05850; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKGNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNTPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1101464..1103203                   PHAGE_Escher_pro147_NC_028896: tail fibers protein; D6T62_05855; phage(gi971753729)     3.66e-165           ShigellaflexneriSARDAGTSASEAATNATDAAGSARAASTSAGSAASSASSASASKDEATKQASAAKGSATTASSKATESAGSATAAAQSKSAAESAAMRAETAAKRAEDIADVVSLEDASTTKKGIVQLSSATNSASESLAATAKAVKVVMDETNKKAPLNSPALTGTPTTPTAPKGTNNTQIASTAYVMAAIAALVDSSPDALNTLNELAAALGNDPNFATTMTNALAGKQPKDATLTALAGLATAADRFPYFTGNDVASLATLTKVGRDILAKSTVAAVIEYLGLQETVNKADNAVQKTGDTLSGGLTFENDSILAWIRNTDWAKIGFKNDSDADTDSYMWFETGDNGNEYFKWRHRLAGGQLKELMNLKWDSLNILVNAVINGCLGIGTTNALGGNSIAFGDNDTGLKQNGDGLLDVYANGQHVFRFQNGVAIAFKNIQAGTARKFTLSSANNSTKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
1103206..1103751                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; D6T62_05860; phage(gi18249919)     9.84e-95            ShigellaflexneriMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
1103775..1105190                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; D6T62_05865; phage(gi18249920)     1.37e-117           ShigellaflexneriMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLCIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
1105141..1105764                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_05870; phage(gi18249921)     3.79e-100           ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRTWNAESSSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVE
1105764..1105943                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; D6T62_05875; phage(gi849255281)     2.65e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1105944..1107587)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; D6T62_05880; phage(gi169257209)     1.53e-05            ShigellaflexneriMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPEFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(1107903..1108529)       class I SAM-dependent methyltransferase; D6T62_05885                                 N/A                 ShigellaflexneriMYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
1108628..1108897                   PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; D6T62_05890; phage(gi428782810)     1.72e-25            ShigellaflexneriMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM

#### region 9 ####
1172595..1172607                   attL                                                                                 N/A                 AGATTGATTTTTG
complement(1187279..1188262)       PHAGE_Entero_phiP27_NC_003356: putative integrase; D6T62_06410; phage(gi18249865)     0.0                 ShigellaflexneriMEISANAFNRYESVARTMVPKIGGGRLVSSVTKEELLYIRKDLLTGYQNSTKNKAAAKGRSVVTVNYYMTTIAGMFQFAADHGYLEANPFQGIKPLKRARAEPDPLTRDEFIRLIDACRHQQTKNLWSLAVYTGMRHGELVSLAWEDIDMKAGTITIRRNYTKLGEFTLPKTEASTNRVVHLIQPAISVLKNQAEMTRLGKQHHIKVQLREYGRSVNHECTFVFNPQVVRKSKQVGFIYKVDSIGDSWETAIKRAGIRHRKAYQSRHTYACWSLSAGANPSFIASQMGHASAQMVFNVYGAWMTDSNAEQIAMLNQKLADYVPWSPK
1188366..1189564                   PROPHAGE_Xantho_33913: ISxac3 transposase; D6T62_06415; phage(gi21231087)            1.93e-10            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRRALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKISSDGCLKKEQMVVSAIASTPCA
1189663..1190352                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; D6T62_06420; phage(gi169257244)     6.07e-97            ShigellaflexneriMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGASIPLVSQVAFSTSSWRRAVLSLEEHHKAWLLWCYSGSICWEYQITITHWAWEEFKAHSGTRKIAEKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTAHWVVMKHIFHRLDSEALLFVMRTRSEQKAAFSKQSIAKVD
1190529..1190605                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
1190607..1190683                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
1190686..1190761                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
1190765..1190839                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
1191173..1191364                   hypothetical protein; D6T62_06445                                                    N/A                 ShigellaflexneriMMLLFRGEELAFSSAFSPVTIRKIMKCPPSGEEDRRKKDPPAKTLGMNSFRYSDCWRVKFLMN
complement(1191541..1192737)       PROPHAGE_Escher_CFT073: transposase; D6T62_06450; phage(gi26248352)                  0.0                 ShigellaflexneriMTESSDCESVQVFIGIDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
1193001..1193402                   PHAGE_Entero_HK225_NC_019717: head assembly protein Fi; D6T62_06455; phage(gi428782384)     1.12e-16            ShigellaflexneriMAKKDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELANMDDTDIRDKSAHPENALTGHENEVISAQPETVIQNMDDLVTVVALVTLHTDALHATRDEPLAFVPPGMAFRVSAGVAAGMTERGLARMQ
1193414..1193785                   PHAGE_Entero_lambda_NC_001416: head-tail joining protein; D6T62_06460; phage(gi9626253)     5.87e-35            ShigellaflexneriMADFDNLFDVALDLADKAIIRNMGIRAVITSGRLKGIMISGVFDDPENISLVAGGVRIEDSLPSLFVKTADILRLCRNDSLMISRESFCVDRITPDDGGCSYIRLRREGLPGNVRAGRYYEGA
1193772..1193873                   PHAGE_Entero_cdtI_NC_009514: putative tail component; D6T62_06465; phage(gi148609390)     1.74e-16            ShigellaflexneriMKGLENAIRNLNSLDTRMVPQASAWAINRVAQKA
1193938..1195094                   PROPHAGE_Escher_CFT073: transposase insF; D6T62_06470; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKGNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1195087..1195629                   PHAGE_Entero_cdtI_NC_009514: putative tail component; D6T62_06475; phage(gi148609390)     1.34e-79            ShigellaflexneriMLKKRTNGSVRYCQYTSAVSVATRQVAGNTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNLPAIKLNTTRRRAGEGLRVGKYFFRGAFVQQLANGRWHVLRCLPEARFATGHDHQGRLRKNRLPVEVVKIPMSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
1195626..1196025                   PHAGE_Entero_cdtI_NC_009514: putative tail component; D6T62_06480; phage(gi148609391)     1.67e-17            ShigellaflexneriMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQTACRGGVAECSVHRKNDGWRLAGCSVYCRLHPGTGTGFRAGYVDGEHHFPGPECTGTFRTHRHPEPTRFLSTDGYLGDGGNHVPDHVHELA
1196036..1196776                   PHAGE_Entero_cdtI_NC_009514: putative major tail subunit; D6T62_06485; phage(gi148609392)     3.36e-161           ShigellaflexneriMTTPNPLAKTKGAGTTLWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTITSKEVMTRTVKISGVGRPYLAEEGAETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVPLSGLVATVKGVQQGSVSIVGMTSDGEFVAVAAVTVSAP
1196835..1197221                   PHAGE_Entero_cdtI_NC_009514: putative tail component; D6T62_06490; phage(gi148609393)     1.44e-83            ShigellaflexneriMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRKAKFDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
1197230..1197559                   PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; D6T62_06495; phage(gi148609394)     7.85e-74            ShigellaflexneriMQFVMRLAREFRRADWRQMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
1197531..1200470                   PHAGE_Entero_cdtI_NC_009514: putative tail protein; D6T62_06500; phage(gi148609395)     8.98e-126           ShigellaflexneriMDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQDYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGGRRARNLTVSWRRDIMPVSLSGSCGNSAGPYPGMVSRNMRQPVRWHRWWAVGHFMETILVWWRKLPHRWSDRLASRSAIPISLSGRMILMPRRRWTMRCIFLPLSLSRYASLGSRGGPVMRPGSPCLRWQRKPVNAHLILIIISMRWVVRCKPCLTGGSSSGMRPILVVKTRWMRRLMRYRKKFSARKNIRGQTPPHRWSTISSVLTIFRRKNAGRICRMQKRRQNGITRSNRNAGMLKMPRTGMKRKLHDISGKLRVLMPCSTPTRLSGMRRYSVKMNVTKKPLRKIHGQPVMMRPPGYCCSTVSSRHRWKGRLLLPDSQQALPLKGLKRINSFWPCSSASATWTGKSRQMKRVCWPVRMSFRRRCWMNSRSCRNRQRLTTEKKRFSPASWQTKNVHCVSSTIWILPLQVWGISSGSATRHSCASGRNTGNSCNSLRMTVARKALTGRRTTGGLRRCRGASDNMKTNATGRNWKWRRATGKTVPCGRFRILRRMRIMRRERQNRCLQWHSAVPVMHWRHSVPPVSILNPSPLPCCQIWPELWHRWPCRRRASVLYSASRLMLMAVFTSLLIVATVARWLTVRRFLLLQKARVWGKRDLKPFCHCVAVLMVSWGVVADTGGSGMVMFAPQYNIEINNDGTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR
1200470..1200799                   PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; D6T62_06505; phage(gi148609396)     9.04e-73            ShigellaflexneriMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIREVCRKWSASVGALWVTVTADFEQVVN
1200799..1201497                   PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; D6T62_06510; phage(gi148609397)     2.52e-154           ShigellaflexneriMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGAGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYDRFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
1201502..1202245                   PHAGE_Entero_cdtI_NC_009514: putative tail protein; D6T62_06515; phage(gi148609398)     5.30e-167           ShigellaflexneriMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
1202143..1202783                   PHAGE_Entero_cdtI_NC_009514: putative tail component; D6T62_06520; phage(gi148609399)     1.60e-72            ShigellaflexneriMAATHTLPLASPGMARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGELWRVICCFLSVPVRLAVLHRCWHRKPELPVHRQRITANRTPVSPHWITWLPRAMFCLFCTVKCAWGRGWYLRRSARQTKGMVVRLWLVAGA
1202844..1206323                   PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; D6T62_06525; phage(gi148609400)     0.0                 ShigellaflexneriMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLERWDTPKVVKGVSFLLRLTVAADDGSERLVSTGRTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDYAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKTLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTTNKNCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLVVVMKKATAGITIS
1206391..1206990                   PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; D6T62_06530; phage(gi148609401)     8.11e-133           ShigellaflexneriMRKVCAAILSAAICLAVSGAPAWASEHQSTLSAGYLQPHTDMPGSDDLKGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
1207054..1208469                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; D6T62_06535; phage(gi18249920)     3.88e-77            ShigellaflexneriMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPWYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLCIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
1208420..1209044                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_06540; phage(gi18249921)     1.36e-05            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSPLHSHRCRTDGSANLAGTAKWQMGDSPIHCDTRNAGSGQRGQTSGNSMAHRTGGEAVHVMERSYLECWSRLTGPPVPGSHAGKICHSTNTYGVERCGSAGETVDAGTGRTGGSNGAGAGRSQRDLSPSANERGAERSGFGFNSGVRVA
1209044..1209223                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; D6T62_06545; phage(gi849255281)     9.25e-07            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1209224..1210975)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; D6T62_06550; phage(gi169257209)     5.60e-09            ShigellaflexneriMLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEEQRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLTQLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPELLETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLPENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQSLQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
1211489..1211579                   capsid protein; D6T62_06555                                                          N/A                 ShigellaflexneriMQERAAAGWTSDSASIEFPAVTDFTCLG
complement(1211576..1211824)       PHAGE_Entero_cdtI_NC_009514: hypothetical protein; D6T62_06560; phage(gi148609412)     2.61e-53            ShigellaflexneriMRIEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(1212179..1212526)       hydrolase; D6T62_06565                                                               N/A                 ShigellaflexneriSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILHAL
complement(1212553..1213749)       PROPHAGE_Escher_CFT073: transposase; D6T62_06570; phage(gi26248352)                  0.0                 ShigellaflexneriMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
1228338..1228350                   attR                                                                                 N/A                 AGATTGATTTTTG

#### region 10 ####
1234462..1234476                   attL                                                                                 N/A                 GTTTGGTCATTTGCC
complement(1241783..1242445)       PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: putative DNA polymerase III epsilon subunit; D6T62_06730; phage(gi414087193)     1.17e-19            ShigellaflexneriMLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSLLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGLKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
complement(1242469..1243125)       carbon-nitrogen hydrolase family protein; D6T62_06735                                N/A                 ShigellaflexneriMSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGNYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
complement(1243227..1243457)       PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; D6T62_06740; phage(gi422936677)     9.58e-23            ShigellaflexneriMLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQPEHLRSWFRERLIAHRLASVNLSRLPYEPKLK
1243596..1243970                   CopC domain-containing protein YobA; D6T62_06745                                     N/A                 ShigellaflexneriMASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAAPQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGHKTKGHYTFSVK
1243974..1244846                   hypothetical protein; D6T62_06750                                                    N/A                 ShigellaflexneriMLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLMIRRLLTKRSLRLQQHAAVWSLISATAMLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGVWLWQIVLALVTLIVALMQPRNMPRLLFMLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWRHQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYGQLLLLKAILVMIMVVIALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVLVIISLLATLEPF
1244859..1245200                   PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; D6T62_06755; phage(gi971764937)     6.91e-12            ShigellaflexneriMMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSLAPFIERAEKLC
complement(1245593..1246670)       PHAGE_Entero_HK022_NC_002166: integrase; D6T62_06760; phage(gi9634144)               1.02e-58            ShigellaflexneriMQRKKYDPNLPRNLTYRRRDKAYYWRNPLTKEEFTLGKISRRDAVAQAIEANHYIYKNYSPAALIEKLKGVDSFTMADWIERYKTILIRRKASRNTYKTRVNQLVTIKEKLGGVLLTEITTRHIAEFLDLWIEGGKNTMAGSMRSVLSDMFREAIVEGRISQNPVTPTRAPKIVVTRERLKLKTYNCIREAADQLPAWFPLAMDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSLSLPVAGLRLGAVVEQCRMVSRGGLSNQCRDKKQPRQHSPGRPDKEICRSQKINRYPVQKPTNFSRNQKPGWTIVQRNMWRRICSASTWPHIGEDNKNVSERKNVLTALA
complement(1246636..1246917)       excisionase; D6T62_06765                                                             N/A                 ShigellaflexneriMNLVTLKTWGKLRYPDNPPSISTLRRWARNGNIYPAPELHGRSYRVVPEAFYINPNKVDTDITHHQPNGRQGRDSPLMEKLKHAAEKIRSQFA
complement(1247034..1248190)       PROPHAGE_Escher_CFT073: transposase insF; D6T62_06770; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1248291..1248479)       DUF1187 family protein; D6T62_06775                                                  N/A                 ShigellaflexneriMYKITATIEKEGGSPTSWTRYSKSKLTKSECEKMLSGKKEAGVSREQKVKLINFNCEKLLSS
complement(1248530..1249627)       PHAGE_Gordon_BritBrat_NC_030942: prohead core protein protease; D6T62_06780; phage(gi100061)     8.81e-17            ShigellaflexneriMALFQRAINTQAYLKAGIMGFAGDGKTYTASELAIGLVMLMRQRGIEAGNRPVMFLDTETGSDWVKPRFDAENIELFTAKTRSFVDLLEAINEAESSGSVMIIDSISHFWTGLCDEYARRRNRKRGLEFSGWAWLKQEWRRFTDRFVNSQAHIIMCGRAGYEYDFFEGDDGKRQLAKTGIKMKAETETGYEPSILIQMEKQMNIETGQVWRTARILKDRSTRIDGQVFSNPTFKNFLPHIESLNLGGEHPGIDTSRDNSELFANDGTPTWLKEKRAKEIALDEIIELLNKHHGGTSNDAKRAKADLLEKTFTSRSWERIKGMDWPTIKAGRNALWIELEGVEYAFPDPQTQNETQQAGYDENIPV
complement(1249633..1249953)       PHAGE_Entero_BP_4795_NC_004813: putative host-nuclease inhibitor protein Gam; D6T62_06785; phage(gi157165999)     2.00e-53            ShigellaflexneriMSVKLRLPQSAYPIFDRIEEMAWARHYQQIVREEKETELADDLEKGLPQHLFESLCIDHLQRHGANKQAISHAFDDDVEFQERMAEHIRYMAETIAHHQVDIDLED
1249992..1250956                   PROPHAGE_Xantho_33913: ISxac3 transposase; D6T62_06790; phage(gi21231087)            2.14e-10            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQSLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLTAPGFLESVLSVNSGCQIIVSDGSIISFFCFCRRDVAQPFQQSSIVIPVHPRCGQFHFCTVFPALTVYYLRFVKTIGA
complement(1250763..1251209)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; D6T62_06795; phage(gi157166067)     1.06e-102           ShigellaflexneriMAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(1251225..1251653)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; D6T62_06800; phage(gi157166067)     1.70e-101           ShigellaflexneriMMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVST
complement(1251650..1251976)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; D6T62_06805; phage(gi157166066)     1.14e-73            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
1252031..1252447                   PROPHAGE_Escher_CFT073: transposase insF; D6T62_06810; phage(gi26249410)             5.75e-100           ShigellaflexneriVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1252492..1252617)       IS3 family transposase; D6T62_06815                                                  N/A                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLG
complement(1252683..1254098)       PHAGE_Shigel_POCJ13_NC_025434: exodeoxyribonuclease VIII; D6T62_06820; phage(gi725949707)     0.0                 ShigellaflexneriMNTDKQVYPLYYEAKNDKVRKRLGIKGGFYWAEAKKLSIAISRGAVAIDDAGYDEDDFKKPVRVNLPVVDDLPPEGVFDTEFCNRYEKGGEDGITMVFIASSPSVQDKPASTDNTNVNGEDMTEIEENMLLPVSGQELPIRWLAQHGSEKPVTHVSRDELQALHIARDEELPAVTALAVSHKTSLLDPLEIRDLHKLVRDTDRVFPNPGNSSLGLMTAFFEAYMDADYTDRGLLTKEWMKGNRVSRITRTASGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARSMDVDIYNLHPAHAKRVEEIIAENKPPFSVFRDKFITMPGGMDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKTQPSGAMADEQATAETMEPDATEHHQNTQPLDAQSQVNSVDEKYQELRAELHEARKNIPPKNPVDADKLLAA
complement(1254198..1254473)       hypothetical protein; D6T62_06825                                                    N/A                 ShigellaflexneriMITSYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLNDGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI
complement(1254548..1254718)       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; D6T62_06830; phage(gi169257260)     2.72e-05            ShigellaflexneriMTKKIKCAYHLYNKEIEESKIITRPLHFMRGVIPTTEMKKYCSEICAEKDQMAHEL
complement(1254718..1254867)       PHAGE_Shigel_Stx_NC_029120: Kil protein; D6T62_06835; phage(gi985761255)             4.10e-22            ShigellaflexneriMESLPIASANNIKKRKLYIRSLTTKTCISDCMIKVFLGRDGLPVKAESW
complement(1254869..1255566)       PHAGE_Entero_P1_NC_005856: InsA; D6T62_06840; phage(gi46401643)                      4.86e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHYRSQNRWSCMTRSSGIITNTISAA
1255749..1256009                   hypothetical protein; D6T62_06845                                                    N/A                 ShigellaflexneriMKIEELREIFSEDGLYTVRVENGAIVSHCRIKCLQSQQRKSGAALIHLVDGLVTDGFLLCGDEFVTSLRALKETGLKAGFSAFECE
1256076..1256675                   PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; D6T62_06850; phage(gi966201473)     1.27e-65            ShigellaflexneriMAHIQLVKQTSSGLLLPATSESCEFLHQIKTGEWIHADFKRVRNYAFHKRFFKLLQLGFDYRTPVGGAITPRERELVSGFVEYLCESVGREHTPALSEAAEQYLNTVATRRTRDTALLKSFEAFREWVTIQAGFYTEHIYPDGSRGRRAKSIAFANMDETEFQQVYKSVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
1256675..1256965                   PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; D6T62_06855; phage(gi327198620)     1.03e-41            ShigellaflexneriMVDLRKAARGQMCTVRIPGYCNHNPETSVLAHYRLAGTCGTATKPHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL
1256962..1257498                   PHAGE_Salmon_vB_SosS_Oslo_NC_018279: antitermination protein Q; D6T62_06860; phage(gi399528832)     2.35e-06            ShigellaflexneriMIYPTNTGKSGEHLRLTTLESVWIQGKLRMWGRWSYIGGGRSGNMFNQLLASQKMTKTAVNEALRRLKKAGIDKPELEAFLREMIEGKQKSWLTHCTDAEALKIDSVIGEVLADHPGLLNVLSQRYVGRGMSKRRMAELLNEQYPEWALITCRRRVDQWLRVAEFILYSPMREAFDYA
1257707..1257783                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
1257785..1257861                   tRNA                                                                                 N/A                 CCACCGCTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTTCTCGGTGGTGGGCTA
1257864..1257939                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCATCAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
1257943..1258016                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTACAGGCTGATGATGCGGGTTCGATTCCCGCTGCCGCTCAA
1258306..1258521                   PHAGE_Entero_VT2phi_272_NC_028656: holin; D6T62_06885; phage(gi966197762)            1.09e-34            ShigellaflexneriMKSMDKMSTGIAYGTSAGSAGYWLLQWLDQVSPSQWAAIGVLGSLLLGLLTYLTNLYFKIREDKRKAARGE
1258521..1258727                   PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; D6T62_06890; phage(gi399498856)          6.17e-33            ShigellaflexneriMSPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDIMPGEVYWQ
complement(1258752..1259914)       PROPHAGE_Escher_CFT073: transposase insF; D6T62_06895; phage(gi26249410)             0.0                 ShigellaflexneriMGRLRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKANSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1259984..1260595                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; D6T62_06900; phage(gi157166064)     3.33e-08            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDIRDFSAQYSDRNVYSIPTIFHYGMFRAFITGVILRPVRGAGCSCLWRNARAFYSHIVRNAPWKLKKSLIPVIPKVAQ
1260484..1261107                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; D6T62_06905; phage(gi730985066)     1.24e-41            ShigellaflexneriMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKPLTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
1261107..1261286                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; D6T62_06910; phage(gi849255281)     7.37e-08            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPQGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1261287..1262993)       E3 ubiquitin--protein ligase; D6T62_06915                                            N/A                 ShigellaflexneriMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNHLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(1263242..1263322)       SAM-dependent methyltransferase; D6T62_06920                                         N/A                 ShigellaflexneriSASRGTFLHTTCYGFLYDLGLRLYLY
1263744..1264229                   PHAGE_Stx2_c_1717_NC_011357: NinI protein; D6T62_06925; phage(gi209447164)           1.49e-47            ShigellaflexneriMKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQSLRCLQLLEQHWVRAVRGNHEQMAMDALAFQQMSLWLMNGGDWFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQVL
complement(1264274..1265423)       PROPHAGE_Xantho_33913: ISxac3 transposase; D6T62_06930; phage(gi21231087)            2.45e-10            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQEKIRVNRTMATTISHSDVSGIWCIQERLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGTSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
1271248..1271262                   attR                                                                                 N/A                 GTTTGGTCATTTGCC

#### region 11 ####
1562635..1562647                   attL                                                                                 N/A                 GCATGGATAGATT
1562729..1562804                   integrase; D6T62_08585                                                               N/A                 ShigellaflexneriMRCTGNSGHYHLFFFAAIYFSLA
complement(1562773..1562979)       PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; D6T62_08590; phage(gi557307549)            1.62e-09            ShigellaflexneriCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1563044..1565089)       peptidyl-dipeptidase Dcp; D6T62_08595                                                N/A                 ShigellaflexneriMTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIAAIALNPQTPDFNNTILALEQSGELITRVTSVFFAMTAAHTNDELQRLDEQFSAELAELANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKVLNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWLIPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQAKLLGFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQPWDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYHPDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNETHPVIYNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHWATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEENEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADDGYQWFVEQGGLTRENGQRFREAILSRGNSEDLERLHRQWRGKAPQIMPMLQHRGLNI
1564996..1565214                   hypothetical protein; D6T62_08600                                                    N/A                 ShigellaflexneriMPGDSDDWQFDQNEEPDTAVCFAQGKDSLLSFSSPEREVFHSVGLLITECNLANQYYPLLSITCYVIDTQKR
1565226..1565972                   PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; D6T62_08605; phage(gi971760361)     4.34e-10            ShigellaflexneriMIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWSNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ
1566061..1566747                   GntR family transcriptional regulator; D6T62_08610                                   N/A                 ShigellaflexneriMTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIRQENSNWFSEE
1566925..1567128                   PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; D6T62_08615; phage(gi410491512)     4.18e-18            ShigellaflexneriMTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLDLIRLGMN
complement(1567164..1568632)       mannitol dehydrogenase family protein; D6T62_08620                                   N/A                 ShigellaflexneriMGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQMDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATWVIVEALARRKAAGLPAFPHLPSCHVTTCQKTVMLCVTLSLPTRKPLMNWHNGSKITLSHQQWWTVLCPQWQRIRWRKSNNLPVCAILLALPVNLSASGLSKITLPDVRNGKKREPNWLVMCCLMKRSCACSTAVIHSWHIWVILLDISTLMTVWKMNIIVMRRMACCRNKRRRKCRALICKITLTDLHAIATRRYVIEPGRLRWMAARNCHSGCWILFAGIWRMTASSICWRWASRVGCVMSVVLMNREIRKSVTHCYLLFRRLYKVVPKGKRASSHCWRLRQSLVMICQTIACLLQKRKRTCLYRMARKRPWRNIPSAA
1568748..1569445                   PHAGE_Entero_P1_NC_005856: InsA; D6T62_08625; phage(gi46401643)                      5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(1569497..1570516)       PHAGE_Burkho_phi1026b_NC_005284: gp59; D6T62_08630; phage(gi38707949)                2.15e-12            ShigellaflexneriSPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGSKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
1570578..1571734                   PROPHAGE_Escher_CFT073: transposase insF; D6T62_08635; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1571731..1572036)       hypothetical protein; D6T62_08640                                                    N/A                 ShigellaflexneriMSLQVSHYNMLRASHEGSQKVVVRTVITVRFVPGAAIAKSILYCAGQLFFKESGHHLTGTDTIYFVTVRLHMHNSTYSSIFCFSMSVRCTGNSGHYHLFFF
1572061..1572300                   antitoxin RelB; D6T62_08645                                                          N/A                 ShigellaflexneriMGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
1572300..1572587                   mRNA interferase RelE; D6T62_08650                                                   N/A                 ShigellaflexneriMAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
1572659..1572814                   PHAGE_Entero_933W_NC_000924: host killer protein; D6T62_08655; phage(gi9632541)      1.00e-25            ShigellaflexneriMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
1573032..1573282                   hypothetical protein; D6T62_08660                                                    N/A                 ShigellaflexneriMMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKMGLRLILWMPERTDLSCATVSLSLHYRHKRSEKLAFLLFQKNAA
1573349..1573627                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; D6T62_08665; phage(gi401817580)     3.86e-16            ShigellaflexneriMARNAKYYNHDNSTVLAHTHERYSHAFKSDWYQHPSCTEEQAEWLIQCYRRRGCEVKKALSLDYRHWIISVRLPYSEQPPRPSRTFQQRIWR
1573629..1574678                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; D6T62_08670; phage(gi557307571)     1.74e-134           ShigellaflexneriMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRLLVEPEPKSMRNLPSGVVPAARQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPQQEKTVVSIAVDPESPESFMKRPKRRSWVNEKYKRWVKTQPCACCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLIFRFLDHAFATGVLG
1574691..1575047                   PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; D6T62_08675; phage(gi985761276)     2.55e-46            ShigellaflexneriMLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQRLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQPVSGGRLGVKIYPIMH
1575062..1575883                   PHAGE_Entero_HK225_NC_019717: late gene regulator Q; D6T62_08680; phage(gi428782441)     1.74e-112           ShigellaflexneriMKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNRAEMGFSAFLGKMGISMNDRARATELLADYALSRCDRVAALRKLPAEIKPVVMRIMASYAFEDYARSAASKKQCPCCYGEKFIESIVFTNKIQYPDGKPPVWAKCTKGVYPSYWEEWKKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGYERLPSTEAFNAICEVTNQITRASWEKTVKKFYDALVTRFDIEEAWAERQLKKVTR
1576027..1576102                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
1576204..1576280                   tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGAATCCAGTACAGCGCGCCA
1576418..1576744                   hypothetical protein; D6T62_08695                                                    N/A                 ShigellaflexneriMVFSALSIYHSYGVGRVNIDEASGCFILRQRIDIVNAARAKAFSRLTVLFCTPDRLSGRDVIILNSDAIQRVCDEFMVANSELFALVQEYNRIARTCGMDELRITHLG
1576780..1576911                   DUF3927 domain-containing protein; D6T62_08700                                       N/A                 ShigellaflexneriMIAYCFCEWHCSSRIMSVPADGVLVAGVVVVAFPLLKKKTPDC
complement(1577192..1577527)       PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; D6T62_08705; phage(gi209447168)     2.29e-54            ShigellaflexneriMKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFTLTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQICPYGLKQQSP
1577787..1577975                   PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; D6T62_08710; phage(gi209427766)     7.99e-34            ShigellaflexneriMAFKHYDVVRAAPPSDLAEKLTHKLKEGWQPFGSPVAITPYTLMQAIAAEGDVVVSGATEPE
1577972..1578133                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; D6T62_08715; phage(gi116221995)     4.94e-20            ShigellaflexneriMILRHRTGPAFQAIKDSLAVGLNALTLTDITKNATYGVEIESLVLEINAPASS
1578283..1578462                   PHAGE_Entero_VT2phi_272_NC_028656: holin; D6T62_08720; phage(gi966197762)            1.04e-31            ShigellaflexneriMDQMEKITTGVSYTTSAVGTGYWFLQLLDRFSPSQWAAIGVLGSLLFGLLTYLTEVYRQ
complement(1578487..1579643)       PROPHAGE_Escher_CFT073: transposase insF; D6T62_08725; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1579707..1579910                   type 1 fimbrial protein; D6T62_08730                                                 N/A                 ShigellaflexneriKFPTTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENNTLLKLDEGSNTASGLGKKYWTEICVR
1579898..1580065                   type 1 fimbrial protein; D6T62_08735                                                 N/A                 ShigellaflexneriMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSVNPGLVRASATFTLEFQ
1580078..1580443                   type 1 fimbrial protein; D6T62_08740                                                 N/A                 ShigellaflexneriMKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTKEANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEGTAENIQIELRDDQDAALKNG
complement(1580518..1580727)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; D6T62_08745; phage(gi557307573)      1.68e-43            ShigellaflexneriMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(1580792..1582005)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; D6T62_08750; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
1585806..1585818                   attR                                                                                 N/A                 GCATGGATAGATT

#### region 12 ####
1713055..1713882                   PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; D6T62_09420; phage(gi371496158)      8.48e-14            ShigellaflexneriMMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGSGKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQGDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGTVLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR
1713879..1714736                   metal ABC transporter permease; D6T62_09425                                          N/A                 ShigellaflexneriMNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFFDENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRRAHKALEDRS
1714733..1715590                   metal ABC transporter permease; D6T62_09430                                          N/A                 ShigellaflexneriMMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFSFDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNAHTQDLLSPN
complement(1715938..1717539)       PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_09435; phage(gi209447153)            0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(1717559..1717906)       PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_09440; phage(gi209447152)            4.41e-54            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAWQHPKRTERPGIRI
complement(1717903..1718577)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; D6T62_09445; phage(gi209447151)     2.25e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
1718660..1719798                   PROPHAGE_Xantho_33913: ISxac3 transposase; D6T62_09450; phage(gi21231087)            2.15e-09            ShigellaflexneriRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRVKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
complement(1719823..1720029)       PHAGE_Stx2_c_1717_NC_011357: phage-related lysozyme; D6T62_09455; phage(gi209447172)     1.14e-28            ShigellaflexneriMSPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDIMPGEVYWQ
complement(1720029..1720233)       PHAGE_Entero_VT2phi_272_NC_028656: holin; D6T62_09460; phage(gi966197762)            2.38e-22            ShigellaflexneriMKSMDKISTGIAYGTAAGSAGYWFLQWLDQVSPSQWAAIGVLGSLLLGLLTYLTQNKRRAGCERIA
1720791..1721959                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; D6T62_09465; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(1722218..1723201)       hypothetical protein; D6T62_09470                                                    N/A                 ShigellaflexneriMTKNAFQFGIEPVHITDNDNLQVNEGLPTNADPQVYALQLAKTVKAMLNGVLKDAQDNIPFPVEVLPTRNSLPTPIIAHTLADRSVLVPVRGGKRPEVVTAPSGAEITVEPIEQAILVSHQTKLWDQKSTTGFTQGTLQQDALNICDNVIRTINSKMVDVLESSKLLKTVELPALTGSLTAKADAIMDALYENTESSFGSEVSDYGIIAHESHLKALSRLAAKQGFGGEDAIVDMLGTDVAYYNGEDRGVFMMAKRFTALSFGCFRHDGESITVVLSRDGDSQSHDLEILGKVFVVAEAATTIKMGTGSATAVLPVVKRLSFTKEAN
complement(1723291..1723782)       hypothetical protein; D6T62_09475                                                    N/A                 ShigellaflexneriMMFNNNNWKLSVTDINLYENTVSLDGQSYPLSLAIKTLIPGYLSGLPSTSREAMELLEALAEAGVTIGNFFSNDLMTAYQRRQMNKRAEAERIAKELASQKERTREMFMTEDEWQKELQRREQVKAERRTYGENLRSATHSAGRSRAAIVADLESGGNWMDSL
complement(1724080..1724760)       PHAGE_Iodoba_phiPLPE_NC_011142: anti-repressor Ant; D6T62_09480; phage(gi197085624)     2.23e-17            ShigellaflexneriMTSVEIAELTGKEHRNVLRDIRNMAEELNALKTEQCSKLSSHIGVTEDVYLNAQGKQQPLYRLDRKHTFILVAGYSVHLRAKCYDHIQTLERRVLQLEDQKKRAAIQSANRRGVTWGDYCKTYGLPAQKLMTALLQHRGLFRKNPISNEWSVNPKYSDCFRIIKPSDQKFSAGGYNFRFNAKGLEVFGKPEMVDKMRGILIAFTGTDQQKQEHLLKLAQSGKVEGI
1724836..1726049                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; D6T62_09485; phage(gi157166067)     0.0                 ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA

#### region 13 ####
1727543..1727554                   attL                                                                                 N/A                 GATGCTCACGTT
complement(1727692..1729302)       PROPHAGE_Escher_Sakai: putative integrase; D6T62_09500; phage(gi15834496)            3.56e-24            ShigellaflexneriMLKSRTYLYQRNGVFYIRLRMKTTSRLTASLPSHNRYKLASVSLRTKDRRTAMAHSRHIKSALKAIHADNPNASYEELREHLKTIVEWELSVSRDDLNDPESYQLYVDQYDDIKSKLREAVATERLTVDQHRYINDVIGVLKACQDRLNGDSSGLLSYLEPETGSLRPSVSLSVLAEPEVPEPKALTLASLIEQYEQENAQNWKPATLSENRASHSTLIEIFDYLDIQDVGKATRADMLRVREVLQQLPKNRKQRFKSMPLSDLLNRESKTDCLDVVTINNKYLIKMAAVFKWAVRNDLIAKNLTEGLELKVPQRKASDARDAFSPEQVGQLLVAAKAYSQKTSGKPYHYYVTALAAITGARLNEVAQLQVKDVRTTEAGTVFIHINEDDSSLPGKSIKNAHSDRCVPLVDGAYGFVLADFMSLVEDRRKTEGDNAMVFNGLKLMKNGYGEQVSKWFNRTLLPKVLADRSGLAFHSFRHTVATQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVETLKEKLAESLSVKKIDGK
complement(1729437..1729511)       tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCTTCGCCCGCTCCA
complement(1729515..1729590)       tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
complement(1729593..1729669)       tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
complement(1729671..1729747)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
1729818..1730036                   hypothetical protein; D6T62_09525                                                    N/A                 ShigellaflexneriMPFFRHKKTRIKRVLSSVHVCYSPRDTALRSLPELKQFMCKNARTFLKLHQPFHQFISANNKPTIGSRQFQP
complement(1729956..1730516)       PHAGE_Entero_VT2_Sakai_NC_000902: similar to antirepressor of bacteriophage P22; D6T62_09530; phage(gi9633431)     2.73e-63            ShigellaflexneriMLKKRTNGSVRYCQYTSQIPVITTELLAQLYGTEPVRIRQNHHENKVRFVEGKHFFKVVGNDLKELRVALNYSQNPVSPKARSLILWTERGAARHAKMLETDQAWDVFEKLEDCYFSQRDPSTPVSCQKSYDTRVLCYQRGGVTVSTIQLRDDDIVISLESWLELARANGWFVVRRDKLVERLMQL
complement(1730509..1731078)       PROPHAGE_Escher_CFT073: transposase insF; D6T62_09535; phage(gi26249410)             2.30e-140           ShigellaflexneriRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMVLRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1731167..1731532                   transposase; D6T62_09540                                                             N/A                 ShigellaflexneriMARSAKPRKRKPASQRSKLPRYVVKLHEDDFFDEEDAEVLRFDSFDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEIARCTEREFATILAGISASGMYCPECGTVHWPDGVAPPF
1731532..1732719                   IS91 family transposase; D6T62_09545                                                 N/A                 ShigellaflexneriMLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTTLMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPDCPWQHIVFTLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPGIFTVIHTWGRDQQWHPHIHLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPDLVMPDALAAEGSSKREWNRFLDTHYRRGNVNVSRVMDNATHVAVYFGSYLKKPPVPMSRLEHYAGQDEIGLRYNSHRTKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITETVRKTAMQITWRGIYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMRWCC
complement(1733130..1733684)       DUF1133 family protein; D6T62_09550                                                  N/A                 ShigellaflexneriMIYPTNTGKSGEHLRLTTLESVWIQGKLRMWGRWSYIGGGKTGNMFNQLLASKKLTKTAVNEALRRMKKAGIEKPELEAFLREMINGKQKTWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKRKMAELLNDAHPEWCFRTCCSRVDVWLNLAEYMLYLPMRDAFSSGDLKTVC
complement(1733681..1733971)       PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; D6T62_09555; phage(gi327198620)     1.03e-41            ShigellaflexneriMVDLRKAARGQMCTVRIPGYCNHNPETSVLAHYRLAGTCGTATKPHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL
complement(1733971..1734570)       PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; D6T62_09560; phage(gi423262437)     5.26e-69            ShigellaflexneriMAHIQLVKQTSSGLLLPATPESCDFLHQIKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPVGGAITPRERKLVSGFVDYLCESVGREHTPALSDAAEQYLNTVATCRTRDTALLKSFDAFREWVTIQAGFYTEHIYPDGSRGRRAKSIAFANMDETEFQQVYKSVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
1734704..1735401                   PHAGE_Entero_P1_NC_005856: InsA; D6T62_09565; phage(gi46401643)                      5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(1735419..1735670)       PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; D6T62_09570; phage(gi423262436)     2.22e-06            ShigellaflexneriMDITVCTYKPGGIVEKIKKLFSSKYAVIRRDDLSVIVEMDYFPETPKSIMYRNGRKAIFLPMRVSDIMGNDKLLDELRVRASC
complement(1735907..1736119)       PHAGE_Entero_933W_NC_000924: protein MokW; D6T62_09575; phage(gi9632542)             1.91e-38            ShigellaflexneriMSHKCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(1736517..1736882)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; D6T62_09580; phage(gi116222036)     1.90e-39            ShigellaflexneriMINRTKLEHILEYARQQKCIGQLCKIPPGDMVEIVEMAMRKAGNSPVTLAGWISCSDAVPAEYCDVILLDDLGNVFPGSWDKVFCPTRGGNKMAFVDKDGVEVESSTHWMPLPEPPQEVNQ
complement(1736882..1737547)       PHAGE_Salmon_SPN3UB_NC_019545: putative Eaa protein; D6T62_09585; phage(gi423262432)     4.43e-07            ShigellaflexneriMATITKERLQWLANISGRDDIDDIDGGEIRELALIALASLEAEPVAECIVEDGGMCIDGFGEYVGHSLPDGMHELYAAPRMRQPDGWKAVAVAWKVTFTQVDQESNTFTAIYFDKAEVERWVRLHKACDFRADITPLYAAPAVPVAVNDDMAYAFHHALSDSSLGSGEIEEIKTGLRAAFANVTIQPEPIVPDEIGPNDSNTFDYVDGWNACRAAMLKGDK
complement(1737547..1737909)       PHAGE_Entero_HK225_NC_019717: HNH endonuclease; D6T62_09590; phage(gi428782431)      4.71e-44            ShigellaflexneriMALTKKQRAELRMKFGGRCAYCGCELGEKWHADHVKPVIRFDGNMLHQERDDISNMVPECHPCNLHKHCSSLEDYRRIISDGRREFLASGKGKALVRMGLVEMKSDPVVFWFEKYQEGATA
complement(1737911..1738129)       PHAGE_Entero_933W_NC_000924: hypothetical protein; D6T62_09595; phage(gi9632473)     1.61e-40            ShigellaflexneriMVTLFRKKYPRKSRTTEFLFLILFIVLMTPISPLIFVWIIGKIIEPVIELYNDVVWASFNTLHNKINPYKES
complement(1738222..1738578)       PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; D6T62_09600; phage(gi100050)     1.48e-11            ShigellaflexneriMEIKPEDELSNIVLFPVKEDDPRNQVNFLYEPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
complement(1738636..1739058)       PHAGE_Shigel_Stx_NC_029120: LygF; D6T62_09605; phage(gi985761265)                    1.37e-67            ShigellaflexneriMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCMELVASGDVYNSGYGVFPSEQAHKDWQNARKKLSRVKVKKPVVVDPDLIWSLPDGEIRRYDRRLNIICRECRKSEAMQRVLAFYQGKFQEAVL
complement(1739073..1739819)       PHAGE_Salmon_SPN3UB_NC_019545: DNA replication protein DnaC; D6T62_09610; phage(gi423262428)     1.10e-100           ShigellaflexneriMKNIATGGVLERIRRLTPPHVTAPFRTVAEWREWQLAEGQKRCEEINRLNRQLRVEKILNRSGIQPLHRKCSFANYRAQNDGQRHALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLMAKGRSVIIVTVSDVMSVLHESYDNGKSGEKFLQELCGVDLLVLDEIGMQRDTKNEQVVLNQIVDRRTASLRGVGMLTNINHAAMNTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRVVK
complement(1739826..1740455)       PHAGE_Salmon_SPN3UB_NC_019545: PrpO; D6T62_09615; phage(gi423262427)                 4.44e-24            ShigellaflexneriMLEGRLSGGTAAEFCNSAVVALQAAGLDVCREYPVPERGDGCGGRIDIVVTDRNGVRCGIELDRNSPRQKSLLKIGAVETGICVLRRSDIARHTEQGILVIGGAVRQKKFDPLSVDLPDWLPDTLWHEWVQFRQALRKPIRTELGANGAIRELEKFRQQGFTPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG
1740613..1741886                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; D6T62_09620; phage(gi16132094)         0.0                 ShigellaflexneriMIALILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRGSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(1741900..1742310)       PHAGE_Azospi_Cd_NC_010355: hypothetical protein; D6T62_09625; phage(gi168495118)     4.06e-11            ShigellaflexneriMAALPYMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPKNRLAKIARLTNERWVDVEPSLREFFCDNGDEWMHLRIEEDLASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVGVVFEHD
1742414..1743570                   PROPHAGE_Escher_CFT073: transposase insF; D6T62_09630; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1743567..1744049)       PHAGE_Burkho_phi1026b_NC_005284: gp58; D6T62_09635; phage(gi38707948)                2.00e-08            ShigellaflexneriMKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPILHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVLRCTGNSGHYHLFFF
1744187..1745107                   alpha/beta hydrolase; D6T62_09640                                                    N/A                 ShigellaflexneriMMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYPAIVVSHPGGGVKEQTAGTYAEKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDVSAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSMFRNGWENNVKSIDALPHIEAGSNARTSDISSEEYAIMPLAPMKEADAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPMQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL
1745107..1745469                   alpha/beta hydrolase; D6T62_09645                                                    N/A                 ShigellaflexneriMKHIQIRNSDMAWHIAANIQFPPNFDESKQYPAIISVHPFGSCKEQTSGNIYGKALAEKGYVVLAYDASFQGESGGEPRWIEDPTQRVEDISRVIDYAVTLPYVDAERIGVLGVCGGCPY
complement(1745483..1746679)       PROPHAGE_Escher_CFT073: transposase; D6T62_09650; phage(gi26248352)                  0.0                 ShigellaflexneriMTESSDCESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPAIIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
1752077..1752088                   attR                                                                                 N/A                 GATGCTCACGTT

#### region 14 ####
1961157..1962617                   Virulence sensor protein PhoQ; D6T62_10790                                           N/A                 ShigellaflexneriMKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFYTLAQWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE
1962698..1962718                   attL                                                                                 N/A                 ACTACACCATTAACTACACCG
complement(1963414..1963695)       hypothetical protein; D6T62_10795                                                    N/A                 ShigellaflexneriMTEAEITGLIRRVAGISQQADEQATQPDSVIAENYARVVAEVMRRDGIELNGVDMRNIRTRVLELLAYRRRVEMYREKEKITYHGKKPERLRR
complement(1963798..1964495)       PHAGE_Entero_P1_NC_005856: InsA; D6T62_10800; phage(gi46401643)                      5.18e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAVRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(1964546..1966147)       PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; D6T62_10805; phage(gi100002)     1.06e-100           ShigellaflexneriMTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYMFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDDARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDKNEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHG
complement(1966131..1966487)       PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; D6T62_10810; phage(gi593779760)     2.87e-16            ShigellaflexneriMARPPKAPAYLDDIAVKQWREKSRQLAERGDLTPADWSNLELYCVNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPPETEEEDELDRLE
complement(1966610..1966783)       hypothetical protein; D6T62_10815                                                    N/A                 ShigellaflexneriMNEREQNRLIRGLIRQRDAWKTQETGHKDKASGRAERITAKRLTDRDREVMECFRNR
complement(1966776..1967216)       PHAGE_Bacill_phi105_NC_004167: hypothetical protein; D6T62_10820; phage(gi22855043)     2.20e-25            ShigellaflexneriMPWQPLRRCTEPGCNRRVKSGKCEEHRRAAWRAEDARRGHRRARGYSRQWDKYRAMYLSKNPLCVRCLEKGIYTPAVVVDHIIPINGGDDVLFWPEWNHQPLCQACHNQKTKWLDPATKSKRAAGGFREEEERAANRNNWMYDADE
complement(1967216..1967512)       PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; D6T62_10825; phage(gi526244642)     8.17e-10            ShigellaflexneriMTEELITLEEVKLHCRIDGDDEDQLISGYIAASLEACQIHIGRRFDDGLAFTPAIKIGCMMFIAHLYENRQIVADNAKTRVPMTIGALWTAYRDVGVY
complement(1967509..1967847)       PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; D6T62_10830; phage(gi9634168)     1.29e-34            ShigellaflexneriMNIGRLRDRITIQTLKQTRDITGEILETWEDGHTLWASVNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVSTGPLAGRVLNIIGQPLPDAARTRLEILCREGAEK
complement(1967844..1969055)       PHAGE_Psychr_Psymv2_NC_023734: phage portal protein, HK97 family; D6T62_10835; phage(gi593779762)     1.24e-49            ShigellaflexneriMWPFRRKKEQRSMTLDEFMALAGTSNTGAGEYVSSGTAESLSAVMNAVTVISEAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRMMIRHCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNTRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGIRYQVEFDSADLLRATPGERFATYERGIKSGVMCPNEAREREGLSPRDGGDEFSQAWKQEVKISEGEKPE
complement(1969057..1969629)       PHAGE_Entero_IME_EF4_NC_023551: prohead protease; D6T62_10840; phage(gi589893040)     7.84e-35            ShigellaflexneriMGEKIMKSMEIRSSEITTSGAGTLTGYVVRWDKLSELLWGEFYEKFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTGRDVIELVKRGDISGMSFSFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGVELARRSLYEQHPEKMPREDNRRWWADLAGV
complement(1969669..1970826)       PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; D6T62_10845; phage(gi23505451)     3.88e-56            ShigellaflexneriMQRIIELRQQKTAIKNQMRDMLENAEKENRSLNDAEGAKFDELRAKAESLDKDISRLEAIADEERSKPGKSSQTTDPAELRNYILTGETRALSTGVPADGGYTVIPELNTEIMRMLADESTMRRICTVKKISSNEFKQLVSAGGATVNHGEEGKAREQTSTPQINEVSIKLYPVYAYPRTTQEIVDFSDVDILSWLTGEIGDTFTETEESDLVVGDGDKKAKGFLSVPRAEKNDKERDFGTLQVIKPSESLAWTSADPLIDLKFALRKKYRKNAVWVVNSTTAAKLQKVKNANGDYIWRDRLQAGDPDTLLGLPVEYLEFMPDNVIALGDFKRGYYIVDHETGVRTRPDNLTEPGFIKIFTQKYLGGGVVDSNAIKILELPEDDD
complement(1971126..1971428)       hypothetical protein; D6T62_10850                                                    N/A                 ShigellaflexneriMEHYWLFVTVRHSYYLKQTDTTEENAMPMKFDEILKQRDKYHADNMETMNITDYRAFLETGALIEKDHHGFVRCALSGEMLAVNPEQTDALIEFLKGIRD
complement(1971492..1971653)       PerC family transcriptional regulator; D6T62_10855                                   N/A                 ShigellaflexneriMTAQIAAYGRLVGDPLVKQSSKGTPEPPTENYADLRNAVNRTYADMGLSKLAE
complement(1971663..1971968)       hypothetical protein; D6T62_10860                                                    N/A                 ShigellaflexneriMSEPKFGEKFYKHNGRITILQISAATPGWWVETDEGSSPVASWALCVLSYPDRDVYQDILPVISTDKGMKPVDIKNMGFQCVMLTEKMMEEMKKNNAGSLH
complement(1971965..1972243)       hypothetical protein; D6T62_10865                                                    N/A                 ShigellaflexneriMHTSGKFNKSLKKRRDRTEPKYRALDMTEHALKVAIRTIDRHAGEGYAKAHPELISAFMTTTAANFATLTEREIAEAEQVTTINVKTGEVES
complement(1972523..1974271)       PHAGE_Entero_P4_NC_001609: DNA primase; D6T62_10870; phage(gi9627512)                6.01e-103           ShigellaflexneriMKLAPNVKKQPRGIKHKDTEVIIFAGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDLVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQMADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKRVINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGRPQVVGSRLIVLADQPKYTGEGTGIKKITGGDPVEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRSKPLNVNDFGKAMKPAAKVYGHEYITRKVKGVTQTNAITTDECDAFL
complement(1974268..1974567)       DUF4222 domain-containing protein; D6T62_10875                                       N/A                 ShigellaflexneriMKLKYSGLTASGNTHPKFTRGDIYRDQYGGMVTIKGVAERRITYRREGYEYDCVMPVYQFRRDFTLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK
complement(1974573..1974806)       hypothetical protein; D6T62_10880                                                    N/A                 ShigellaflexneriMRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSRIATALITLLEPVIMELQEIDLLHDRYKEQHTGE
complement(1974808..1975028)       hypothetical protein; D6T62_10885                                                    N/A                 ShigellaflexneriMRDDRFNSLKQEFSGVPDDAADALSSMPELIRAAFFLLSTREYKSTGLMYISPPIMLISQRLFEKRRTGIAA
complement(1975021..1975242)       hypothetical protein; D6T62_10890                                                    N/A                 ShigellaflexneriMHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFALECIRYIATRSLNDAKNILVADCENGGGYA
complement(1975232..1975432)       host cell division inhibitor Icd-like protein; D6T62_10895                           N/A                 ShigellaflexneriMVAVNHIPHLVHTQTAFVWRFLALSTGESQIIHVTAWTEREARSRCPSGCVAVFAARIRQGETYAQ
complement(1975441..1976187)       hypothetical protein; D6T62_10900                                                    N/A                 ShigellaflexneriMKIEYTPERGRGFVRPGETGKPQNWGFSGIKKAAPKWSRLSEQITRCAVCVCDPKHKHGDDSRYQAGGQCNQSGSVRCHNCEVLSFDEYSLRYFSRAKEHGANRSDSCSFFLRRLFRAGDVFSVDSSLVIVCACKAMRRSTSHHGADSFYPLGSMPRCCNSLRIIRFIQAARESSPSCCCAFSIFSRKSGSKRNWNGGLPRLSFLCVDTLITPHVMYLCVMTHYTQSTQKAKPRTVGAVTGLLTNNVN
complement(1976245..1976433)       PHAGE_Entero_P4_NC_001609: transcriptional regulator; D6T62_10905; phage(gi9627517)     1.17e-10            ShigellaflexneriMLSTDRFIREKECEKLTGLSRSCRYRLEKAGQFPSRRKLGGRSVGWSLSEVLAWKDSCKAVH
complement(1976838..1978067)       PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; D6T62_10910; phage(gi399528791)      7.78e-69            ShigellaflexneriMSRALNKLSDTQLRKINGTPAQKTAFLNDGGNLSVRHSTSGLLTWYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKAAQCRAWLAEGKNPRHELNYTVQEALKPVTVGDALTYWLESYAKENRVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQVAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGELLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWTERLGILAGTHENVTTLPVARRK
1978094..1978114                   attR                                                                                 N/A                 ACTACACCATTAACTACACCG

#### region 15 ####
2107968..2108002                   attL                                                                                 N/A                 ATGCTGCCAACTTACTGATTTAGTGTATGATGGTG
complement(2112922..2113619)       PHAGE_Entero_P1_NC_005856: InsA; D6T62_11710; phage(gi46401643)                      3.04e-60            ShigellaflexneriVASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSRPRAYSRAVTSSSARKWTNSGDTSGLNRASAGCFTRMTGSGRRLLRTYSVNALWRRWGVLACCHPLTWYGRMAGRCMNPARESCTSASDIRSELSGITIGSTWHGWDGSRCRSQNRWSCMTKSSGIITNTINAA
complement(2113653..2113844)       hypothetical protein; D6T62_11715                                                    N/A                 ShigellaflexneriMILFHYGESWNLLRADQRLIFAKSWPRASRYQQGHQDLFILRSDLPSQVFIRRKVRRVMLPTY
2113898..2114557                   PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; D6T62_11720; phage(gi937456276)               3.11e-167           ShigellaflexneriMEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA
complement(2114758..2115135)       GNAT family N-acetyltransferase; D6T62_11725                                         N/A                 ShigellaflexneriMKDYLCKKLFNRLSGTLVIRARCGNNITGLACCNILYPSPRYSGQLHIKELYVSQCDRNKGTGKAIMRFIARLALEQECLSLSWNAEKSNPGANRFYQALGGRINDHIVNYYLHGESLSKLASGI
complement(2115202..2118168)       PROPHAGE_Xantho_33913: Tn5041 transposase; D6T62_11730; phage(gi21231545)            8.67e-46            ShigellaflexneriMPRRSILSAAERESLLALPDSKDDLIRHYTFNDTDLSIIRQRRGPANRLGFAVQLCYLRFPGVILGVDELPFPPLLKLVADQLKVGVESWNEYGQREQTRREHLSELQTVFGFRPFTMSHYRQAVQMLTELAMQTDKGIVLASALIGHLRRQSVILPALNAVERASAEAITRANRRIYDALAEPLADAHRRRLDDLLKRRDNGKTTWLAWLRQSPAKPNSRHMLEHIERLKAWQALDLPTGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALATEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDAFAAIEAVMSWDSFAESVTEAQKLAQPDDFDFLHRIGESYATLRRYAPEFLAVLKLRAAPAAKNVLDAIEVLRGMNTDNARKLPADAPTGFIKPRWQKLVMTDAGIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPEKFTSLKQSSELPLAVATDCEQYLHERLTLLEAQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMVLPHVKITELLLEVDEWTGFTRHFTHLKSGDLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAGHWGDGTTSSSDGQNFRTASKAKSTGHINPKYGSSPGRTFYTHISDQYAPFHTKVVNVGLRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGDAAYDALKPMIGGTLNIKHVRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERAAHALRGNGHAVDDSLLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
complement(2118171..2118731)       PHAGE_Sodali_phiSG1_NC_007902: resolvase; D6T62_11735; phage(gi89886020)             6.53e-33            ShigellaflexneriMTGQRIGYIRVSTFDQNPERQLEGVKVDRAFSDKASGKDVKRPQLEALISFARTGDTVVVHSMDRLARNLDDLRRIVQTLTQRGVHIEFVKEHLSFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKSLSSERIAELRQRVEAGEQKTKLAREFGISRETLYQYLRTDQ
complement(2118857..2119471)       DUF3330 domain-containing protein; D6T62_11740                                       N/A                 ShigellaflexneriMAVPECAHRLMRCRPSLVRGRAAQVNPGGFTTPARRPSVPHRTAGCGKSSLRPLMAGSSPSLPDGSNPSAAIVQSASDVQCSRLLKTTMEVVAEGVETPDCLAWLRQAGCDTVQGFLFARPMPAAAFVGFVNQWRNTTMNANEPSTSCCVCCKEIPLDAAFTPEGAEYVEHFCGLECYQRFQARASTATETSVKPDACDSPPSG
complement(2119410..2120423)       PHAGE_Mycoba_Butters_NC_021061: integrase; D6T62_11745; phage(gi479336499)           2.05e-12            ShigellaflexneriMKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
2120583..2121056                   PHAGE_Bacill_Blue_NC_031056: hypothetical protein; D6T62_11750; phage(gi100007)      9.64e-25            ShigellaflexneriMKLSLMVAISKNGVIGNGPDIPWSAKGEQLLFKAITYNQWLLVGRKTFESMGALPNRKYAVVTRSSFTSDNENVVIFPSIKDALTNLKKITDHVIVSGGGEIYKSLIDQVDTLHISTIDIEPEGDVYFPEIPSNFRPVFTQDFASNINYSYQIWQKG
2122025..2122059                   attR                                                                                 N/A                 ATGCTGCCAACTTACTGATTTAGTGTATGATGGTG

#### region 16 ####
2370726..2371999                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; D6T62_12965; phage(gi16132094)         0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGVEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(2371924..2372190)       hypothetical protein; D6T62_12970                                                    N/A                 ShigellaflexneriMRIIFLRKEYLSLLPSMIASLFSANGVAAAIDLCQGYDIKASCHASRQSLSGITQDWSIAWICPYISRHLLSLNPLQARCRRYSRGER
2372340..2373037                   PHAGE_Entero_P1_NC_005856: InsA; D6T62_12975; phage(gi46401643)                      5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(2373485..2373664)       hypothetical protein; D6T62_12980                                                    N/A                 ShigellaflexneriMYVVPVFGILSAIVSCRLPVVREAANTIYRGYVWDSLQDSVKMTLLQVHNFVDNSGRKK
2373663..2375948                   PHAGE_Colwel_9A_NC_018088: ribonucleotide-diphosphate reductase subunit alpha; D6T62_12985; phage(gi392973311)     0.0                 ShigellaflexneriMNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
2376182..2377312                   PHAGE_Colwel_9A_NC_018088: ribonucleotide-diphosphate reductase subunit beta; D6T62_12990; phage(gi392973312)     0.0                 ShigellaflexneriMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
2377312..2377566                   PHAGE_Cyanop_S_RIM50_NC_031242: head outer capsid protein; D6T62_12995; phage(gi100204)     7.99e-06            ShigellaflexneriMARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
complement(2377620..2378270)       lipopolysaccharide kinase InaA; D6T62_13000                                          N/A                 ShigellaflexneriMAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSRVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
2378470..2378676                   hypothetical protein; D6T62_13005                                                    N/A                 ShigellaflexneriMNFIRQGLGIALQPELTLKSIAGELCSVPHEPTFYRQISLLTKEKPVEGSPLFLLQMCMEQLVAIGKI
complement(2378718..2379794)       PHAGE_Staphy_MCE_2014_NC_025416: glycerophosphoryl diester phosphodiesterase; D6T62_13010; phage(gi725948760)     4.61e-11            ShigellaflexneriMKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE

#### region 17 ####
2694218..2694229                   attL                                                                                 N/A                 AAGCCCTGTTTA
complement(2708166..2708720)       PHAGE_Escher_pro483_NC_028943: DNA invertase; D6T62_14630; phage(gi971758535)        1.64e-114           ShigellaflexneriMLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLEAARAQGRIGGRRPKLSPEWAQAGRLIASGVSRQKVAIIYDVGESTLYKRFPARVI
2709206..2711032                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; D6T62_14635; phage(gi169257209)     3.90e-05            ShigellaflexneriMREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQENIIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQFRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSNTVSARNTSGFREQVAAWLEKLSASAELRQQSFTVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(2711209..2711833)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; D6T62_14640; phage(gi18249921)     2.44e-05            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSPLHSHRCRTDGSANLAGTAKWQMGDSPIHCDTRNAGSGQRGQTSGNSMARRTGGEAVHVMERSYLECWPQLTGPPVPGGHAGKICRGTNKYDVECGSAGAADDAGTGTGHSDDTGHCAQRDLSPSANERGAERSGFGFNSGVRVA
complement(2711784..2712136)       phage tail protein; D6T62_14645                                                      N/A                 ShigellaflexneriVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYREKLTVIKSSDLSGAVIQRLTTGTGGDFSAQYSHRNVYSIPTIFSLRDVQSIHYRGHIAPCPGCRMHMSLAQCPGFLFAHRGA
complement(2712350..2713044)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; D6T62_14650; phage(gi18249920)     4.52e-93            ShigellaflexneriMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPAHSALGVLFCLKMLSVLTLRVISGSGAA
complement(2713067..2713437)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; D6T62_14655; phage(gi18249919)     4.84e-33            ShigellaflexneriVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGNGKKTCCWGSATKIKKSKPVVFTRNRCRRWISAPSLINPHTTPLNGPPLRKVLPGA
complement(2713645..2714082)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; D6T62_14660; phage(gi849255282)     1.15e-20            ShigellaflexneriMAIAFKNIQAGTARKFTLSSANNSTKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQN
2714191..2715414                   PROPHAGE_Escher_MG1655: IS2 transposase TnpB; D6T62_14665; phage(gi16132094)         7.74e-171           ShigellaflexneriMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKSGRTRPYCQGWELSQPLSPGVACAVARHSQTNRLDGWPPQSSHYGCASPYTPCYRRAAHVWLSSVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGVEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(2715339..2716325)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; D6T62_14670; phage(gi18249918)     4.33e-82            ShigellaflexneriMKASDKPRQLAVPFASTGDKNRIPDKATQQTRESGNAAYDSGFPPVTMTAVSAGGIPPHGKDFNGLMYDITAAIRFAQAGGLYTYNAGFAGAIGGYAKGAILAGVATTAVWLNTTDDNLTDPEGSDSAGWVNLLEDPKRIFLRQKNNLSDLQNKGTARDNLQVYSKEQSDQRYVHREGDKITGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEGQGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGNSIVLGDNDTGFKQNGDGILDVYANSQRVFRWICPYISRHLLSLNPLQARCRRYSRGER
complement(2716312..2716916)       DUF2612 domain-containing protein; D6T62_14675                                       N/A                 ShigellaflexneriVQNVAATVLAQYAASPRLNALINSFNAALSPTVLSVIFMVLSGTSIPQKSMVLMSGERLWVSVAGRRTILITWASASPGWTPRWMIPVRLIRHRFTTANRIPGLLTCLMLYTGGYKPCRTLLTVPFRILTCDLCSEKNAGLMFIMAGGVTSLSPRSRWQNWRLSSRRVHCHPRRVFMFQFRSPVMKASGA
complement(2716918..2717202)       PHAGE_Edward_GF_2_NC_026611: hypothetical protein; D6T62_14680; phage(gi764162276)     2.09e-17            ShigellaflexneriKKSDYLPSDITRQVQQSVLDAFNGTDGGLRARVASVVSAGRYYAGIYKTDPEHIDILGLTVSRDGSSWTTAVTFGIDEIPVLDVSDISVKLQEA
complement(2717235..2718830)       PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_14685; phage(gi209447153)            2.81e-63            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPRQKTRSPVRLNPGTKIFTKTAAGRTSPGDTSPSACNQLPGLWRCSERNGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPLNRSNAVMPVQGYLHGSRSANIWNISLYIASQKYTRDRAWSAVIPWCAGYQKWQTNSVLCIRMTMFWRQERCTQMTLRKYWPRGTERRKRVVCGYTSGMIVMRVHPCRQPSGSRIRQIAKENIRSSTGKVSGRTAGCLCRLRTVRNGPGEGSRVPGPRPPKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
complement(2718843..2719140)       PHAGE_Stx2_c_1717_NC_011357: transposase; D6T62_14690; phage(gi209447152)            3.78e-21            ShigellaflexneriMRCGFNGPASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLNGAASSGRPGKGKCTRQLSYPCYWRDRVATSQTDRTAGIRIPVA
complement(2719085..2719862)       PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; D6T62_14695; phage(gi17546153)     3.64e-08            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFALDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVRWHLIRRSRPDQLQIPSGVTSMMSALRGSRKRPTVRAASIRCGKTVPSHSGTVTGANPRNERGIRRCRPVPKSGSSLASQICVVASMARLRRCRTRKMA
complement(2719947..2720135)       PHAGE_Pseudo_VCM_NC_029065: Baseplate J-like protein; D6T62_14700; phage(gi985769593)     9.54e-05            ShigellaflexneriVYGGSPADIAAAIWRKAPPGIDMNGNTTFTVADKEYDPPYPEYVISWQTLKPVSLHVSVTLKK
complement(2720241..2720938)       PHAGE_Entero_P1_NC_005856: InsA; D6T62_14705; phage(gi46401643)                      5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(2720993..2721130)       bacteriocin; D6T62_14710                                                             N/A                 ShigellaflexneriMPGSDEETRADFENRRRNSVARNARNILEAIRGEILSTVENVVDV
2721210..2722365                   IS3 family transposase; D6T62_14715                                                  N/A                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTPPEKGSVLLVPARWLNWNLKFCNCVRRMKLALSEIYKKQQRILHRSRKIRVNRTMATTISHSDVSGIWCIQERLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGTSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGRMVVPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQKPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
2722013..2722024                   attR                                                                                 N/A                 AAGCCCTGTTTA
complement(2722334..2722409)       integrase; D6T62_14720                                                               N/A                 ShigellaflexneriMRCTGNSGHYHLFFFAAIYFSLA
