gi|00000000|ref|CP034060.1|  Shigella flexneri strain FDAARGOS_535 chromosome, complete genome. 4586233, gc%: 50.90%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(1477421..1478577)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_08820; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVTEKYALIEQWRQQFPIEVMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKHHQMAA
1478657..1479343                   PHAGE_Acinet_phiAC_1_NC_028995: putative baseplate J-like protein; EGX88_08825; phage(gi971763836)     1.74e-29            ShigellaflexneriMPGSDEETRADFENRRRNSVARNARNILEAIRGEILSTVENVVDVYVTHNPKKTEQKAGVSQYPLTPGSLYVGVYGGSPADIAAAIWRKAPPGIDMNGNTTFTVADKEYDPPYPEYVISWQTLKPVSLHVSVTLKKSDYLPSDITRQVQQSVLDAFNGTDGGLRARVASVVSAGRYYAGIYKTDPEHIDILGLTVSRDGSSWTTAVTFGIDEIPVLDVSDISVKLQEA
1479345..1479950                   PHAGE_Aeromo_vB_AsaM_56_NC_019527: hypothetical protein; EGX88_08830; phage(gi422937564)     7.07e-39            ShigellaflexneriMQNVAATVLAQYAASPRLNALINSFNAALSPDSFISDFYGLIWNIDTAEKYGLDVWGKIVGVSCWLTVKDDFNYLGFSESRMDTPVMDDPCPFNQAPFYNGKSDTRTVDLSDAVYRRLILMKAMSNITDCSVPDINLMLRFMFGKKRRAYVLNNGGLRMSYVFESALSLAELAIIQSSGALPSPPGVYVSVVLKESRNEGQ
1479937..1480836                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; EGX88_08835; phage(gi18249918)     2.84e-82            ShigellaflexneriMKASDKPRQLAVPFASTGDKNRIPDKATQQTRESGNAAYDSGFPPVTMTAVSAGGIPPHGKDFNGLMYDITAAIRFAQAGGLYTYNAGFAGAIGGYAKGAILAGVATTAVWLNTTDDNLTDPEGSDSAGWVNLLEDPKRIFLRQKNNLSDLQNKGTARDNLQVYSKEQSDQRYVHREGDKITGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEGQGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGNSIVLGDNDTGFKQNGDGILDVYANSQRVFR
complement(1480848..1482121)       PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; EGX88_08840; phage(gi24114950)     0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
1482185..1482658                   PHAGE_Entero_SfMu_NC_027382: tail fiber protein; EGX88_08845; phage(gi849255282)     1.84e-28            ShigellaflexneriMAIAFKNIQAGTARKFTLSSANNSTKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
1482661..1483206                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; EGX88_08850; phage(gi18249919)     4.20e-94            ShigellaflexneriMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITTNRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
1483230..1484498                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; EGX88_08855; phage(gi18249920)     8.41e-111           ShigellaflexneriMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIVSPQFFITGCSEHSLPGSYCALSGGPDAHVSGAMPGLFIRTS
1484449..1485073                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; EGX88_08860; phage(gi18249921)     1.46e-05            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSPLHSHRCRTDGSANLAGTAKWQMGDSPIHCDTRNAGSGQRGQTSGNSMAHRTGGEAVHVMERSYLECWPRLTGPPVPGSHAGKICHSTNTYGVERCRSAGETVDAGTGRTGGSNGAGAGRSQRDLSPSANERGAERSGFGFNSGVRVA
1485073..1485253                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; EGX88_08865; phage(gi849255281)     8.16e-07            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGAGLRFSGVSPVCGLCDVA
complement(1485254..1487080)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; EGX88_08870; phage(gi169257209)     3.80e-05            ShigellaflexneriMREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQENIIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQFRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFTVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
1487578..1488132                   PHAGE_Escher_pro483_NC_028943: DNA invertase; EGX88_08875; phage(gi971758535)        4.20e-114           ShigellaflexneriMLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLKTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLEAARAQGRIGGRRPKLSPEWAQAGRLIASGVSRQKVAIIYDVGESTLYKRFPARVI
complement(1488368..1488439)       ferredoxin; EGX88_08880                                                              N/A                 ShigellaflexneriLCCFESFLMALLITKKCINCDMCE
complement(1488471..1489319)       MurR/RpiR family transcriptional regulator; EGX88_08885                              N/A                 ShigellaflexneriMNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAALRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEALVKKLV
1489528..1490163                   phosphatidylglycerophosphatase C; EGX88_08890                                        N/A                 ShigellaflexneriMATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPLLPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQERLTTYLLSSDADIWLITGSPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCLGHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE
1490188..1490724                   PHAGE_Achrom_83_24_NC_028834: tRNA-specific adenosine deaminase; EGX88_08895; phage(gi971747971)     3.39e-07            ShigellaflexneriMRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAVGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD
complement(1490721..1492277)       PHAGE_Bacill_BM5_NC_029069: hypothetical protein; EGX88_08900; phage(gi985757795)     2.40e-11            ShigellaflexneriMKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGELRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLFSRKGSEEKQN

#### region 2 ####
1933511..1934437                   PHAGE_Bacill_G_NC_023719: gp245; EGX88_10950; phage(gi593777701)                     1.51e-29            ShigellaflexneriMIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSELGVHLLSLRSVADYVRREERAEGEALAEEMTLRDALSLFVARGCEVLPVVNTQGQPCGTLHFQDLLVEA
1934442..1935173                   ABC transporter permease; EGX88_10955                                                N/A                 ShigellaflexneriMKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQESFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAVLAIAVPVIGFGLQPAIIALILYGVLPILQVTLAGLGAIDPSVTEVAKGMGMSRGQRLRKVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIADRLFERLVQALSQHAK
complement(1935154..1935261)       protein YohO; EGX88_10960                                                            N/A                 ShigellaflexneriMRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG
complement(1935321..1935822)       MerR family transcriptional regulator; EGX88_10965                                   N/A                 ShigellaflexneriLSSQIKHSPGNPGRFSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLARPLAQSTTPTIRRPYIAGVVRKSNLRPTAATHQLARTRPYFPTRYLA
complement(1935819..1937028)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; EGX88_10970; phage(gi157166066)     6.75e-71            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTHVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
complement(1937054..1937335)       MerR family transcriptional regulator; EGX88_10975                                   N/A                 ShigellaflexneriMGLPLIPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKILLSNENVDVQNVWRDQQETLLTYLQSVNRPGNPGD
1937298..1937317                   attL                                                                                 N/A                 CACGCGCGTAACGTGACAGG
complement(1937356..1938153)       PHAGE_Entero_BP_4795_NC_004813: putative integrase; EGX88_10980; phage(gi157165986)     0.0                 ShigellaflexneriMSVKLRLPQFQFATDNGYTSGNPFNGLTPLKKSKIEPDPLTRDEFIRFIEACRHQQTKNLWIIAVYTGIRHGELVSLAWEDIDLKARTITIRRNYTKLGEFTPPKTDAGTGRTIHLVQPAIDALKSQAEMTMLGKQHSVEVKQREYGRSTVHKCTFVFSPQVIKQRQFSGPHYKVDSIRESWTSILKRAGLRHRKSYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNRRLSESVPCMPHKKPG
1938192..1939348                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_10985; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKELGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGMLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1939465..1939734                   hypothetical protein; EGX88_10990                                                    N/A                 ShigellaflexneriPARQPVRQRHRHHLRLLQKMRRLNRRQQRRAVPRRHPLRRQSLQAVRRRQRRAKARQNPRQCALRQQQNGQRILLMSYLWKMRARRKRG
1939662..1940735                   PHAGE_Entero_P88_NC_026014: tail fiber protein; EGX88_10995; phage(gi744692739)      1.08e-154           ShigellaflexneriAAKRAEDIADVVSLEDASTTKKGIVQLSSATNSASESLAATAKAVKVVMDETNKKAPLNSPALTGTPTTPTAPKGTNNTQIASTAYVMAAIAALVDSSPDALNTLNELAAALGNDPNFATTMTNALAGKQPKDATLTALAGLATAADRFPYFTGNDVASLATLTKVGRDILAKSTVAAVIEYLGLQETVNKADNAVQKTGDTLSGGLTFENDSILAWIRNTDWAKIGFKNDSDADTDSYMWFETGDNGNEYFKWRHRLAGGQLKELMNLKWDSLNILVNAVINGCLGIGTTNALGGNSIAFGDNDTGLKQNGDGLLDVYANGQHVFRFQNGVAIAFKNIQAGTARKFTLSSANNSTKN
1940792..1941489                   PHAGE_Entero_P1_NC_005856: InsA; EGX88_11000; phage(gi46401643)                      3.13e-56            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMVMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSAGVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(1941720..1942417)       PHAGE_Entero_P1_NC_005856: InsA; EGX88_11005; phage(gi46401643)                      3.13e-56            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMVMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSAGVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
1942459..1942872                   PHAGE_Entero_SfMu_NC_027382: tail fiber protein; EGX88_11010; phage(gi849255282)     2.04e-28            ShigellaflexneriMAALPKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
1942875..1943420                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; EGX88_11015; phage(gi849255280)     2.03e-52            ShigellaflexneriMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITTNRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPVSPEGSS
1943444..1944730                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; EGX88_11020; phage(gi18249920)     1.54e-106           ShigellaflexneriMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMAGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGSHTEAHDWDRWGFQCPVLPPERI
1944809..1945431                   DUF4376 domain-containing protein; EGX88_11025                                       N/A                 ShigellaflexneriMHMSLAQCPGFYSHIVRNAPWKLKKSLIPVIPKVAQTVTFFLTTGTRQSPTQPPLMMSHRRVSKSGRNCKVANGVRPHSLHQKCWKRPERPDVRKLKHGAQNRRRSRSRLNGTVVSGMLAPTHWAACPRSCWQNLSQHKHIWRGAMPIISRNCRCRNWKNWRQQWCRRRSIATMRFIAVSVKKRSAVWMIWLQFGRLTLSAA
1945431..1945610                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; EGX88_11030; phage(gi849255281)     2.65e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(1945611..1947254)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; EGX88_11035; phage(gi169257209)     2.86e-05            ShigellaflexneriMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(1947569..1948228)       class I SAM-dependent methyltransferase; EGX88_11040                                 N/A                 ShigellaflexneriMNEKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
1948293..1948562                   PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; EGX88_11045; phage(gi428782810)     1.72e-25            ShigellaflexneriMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
complement(1948678..1948926)       PHAGE_Entero_cdtI_NC_009514: hypothetical protein; EGX88_11050; phage(gi148609412)     2.53e-53            ShigellaflexneriMRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
1949152..1949171                   attR                                                                                 N/A                 CACGCGCGTAACGTGACAGG
complement(1949154..1949219)       MerR family DNA-binding transcriptional regulator; EGX88_11055                       N/A                 ShigellaflexneriMALYTIGEVALLCDINPVTLRA
complement(1949324..1950652)       PROPHAGE_Escher_MG1655: IS4 transposase; EGX88_11060; phage(gi16132099)              0.0                 ShigellaflexneriMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISLCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA
1950878..1952563                   PHAGE_Entero_YYZ_2008_NC_011356: putative 2-component sensor protein YehU; EGX88_11065; phage(gi209427798)     0.0                 ShigellaflexneriMYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA

#### region 3 ####
2074514..2074526                   attL                                                                                 N/A                 TTTATTCTTTTTT
2077588..2078427                   PHAGE_Stx2_c_1717_NC_011357: integrase; EGX88_11670; phage(gi209447127)              0.0                 ShigellaflexneriMAISDTKLRTIYGKPYSGPQEVADADGLSVRISPKGVIQFQYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQCLDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEEKDNPRRARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERSRASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFEQM
2078506..2079180                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; EGX88_11675; phage(gi209447151)     1.97e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
2079177..2079527                   PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_11680; phage(gi209447152)            6.69e-34            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
2079524..2080429                   PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_11685; phage(gi209447153)            1.34e-89            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSL
2080474..2081747                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; EGX88_11690; phage(gi24114950)     0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDRKALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
2081760..2082047                   PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_11695; phage(gi209447153)            9.92e-37            ShigellaflexneriSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEE
2082112..2083268                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_11700; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2083237..2083315)       LysR family transcriptional regulator; EGX88_11705                                   N/A                 ShigellaflexneriVLRCTGNSGHYHLFFFAAIYFSLA
complement(2083325..2084524)       PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_11710; phage(gi209447153)            1.82e-138           ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKTHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLF
complement(2084544..2084706)       IS66 family insertion sequence hypothetical protein; EGX88_11715                     N/A                 ShigellaflexneriVQWADRDGLCLFAKRLAGDPGRESTPDASSVIHATGGDRVATSQTDRTAWHPDIA
2084756..2085965                   PHAGE_Stx2_c_1717_NC_011357: putative transposase; EGX88_11720; phage(gi209447180)     3.35e-59            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLCQHMAGLRLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTHVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
complement(2086010..2086180)       PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_11725; phage(gi209447152)            1.18e-26            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKIL
complement(2086177..2086851)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; EGX88_11730; phage(gi209447151)     1.97e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
2086921..2087220                   hypothetical protein; EGX88_11735                                                    N/A                 ShigellaflexneriMGRLRHFVLLNAQKLCDTQHMMQQILLSLVHALYEGNPQPVFANTEKLNDAVEELRQLLDNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK
2087392..2087721                   DUF496 family protein; EGX88_11740                                                   N/A                 ShigellaflexneriMETTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK
complement(2087822..2088004)       ethanolamine utilization protein; EGX88_11745                                        N/A                 ShigellaflexneriMNHPVIGVVTKADLASMEQISLVKSWLREAGAHNVLVTSAVNNNGVTELFALLHTEEGCC
2088058..2088204                   PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_11750; phage(gi209447153)            5.24e-13            ShigellaflexneriLVAGKAGTCRLNGIDPEAYLRHILSILPEWPSNRVDELLPWNVVLTNK
complement(2088582..2089740)       PHAGE_Stx2_c_1717_NC_011357: putative transposase; EGX88_11755; phage(gi209447180)     1.12e-47            ShigellaflexneriMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNNILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRMHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTHVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
complement(2089755..2090923)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_11760; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(2091049..2091270)       hypothetical protein; EGX88_11765                                                    N/A                 ShigellaflexneriMPFYFRKECPLNSGYLSQSRMGELLLHPGISTTEASMNNNNTLYVGLDVHKESITVAYEPPRESWRLNFLRKR
2091286..2092442                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_11770; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVVPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2103449..2103461                   attR                                                                                 N/A                 TTTATTCTTTTTT

#### region 4 ####
2095930..2095946                   attL                                                                                 N/A                 GAACGGGGCGCATATTA
2105244..2106412                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_11855; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(2106519..2107781)       PROPHAGE_Escher_CFT073: prophage P4 integrase; EGX88_11860; phage(gi26248270)        0.0                 ShigellaflexneriISLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNMALAHKSNRKWSQNTADRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNKFIP
complement(2107943..2108018)       tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
2108026..2108042                   attR                                                                                 N/A                 GAACGGGGCGCATATTA
complement(2108119..2108916)       DgsA anti-repressor MtfA; EGX88_11870                                                N/A                 ShigellaflexneriMIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVALAERFLQQKRLVPLQGFELNSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFISLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYVASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH
2109010..2109099                   tRNA                                                                                 N/A                 GGAGAGATGCCGGAGCGGCTGAACGGACCGGTCTCGAAAACCGGAGTGGGGGCAACTCCACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
2109069..2109099                   attL                                                                                 N/A                 ACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
complement(2109127..2110167)       PHAGE_Salmon_ST64B_NC_004313: Integrase protein; EGX88_11880; phage(gi23505472)      1.72e-129           ShigellaflexneriMGRRRKNPEHEKLPPNVYPNKYSYVWKPTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSKCDFCH
complement(2110167..2110307)       DUF4224 domain-containing protein; EGX88_11885                                       N/A                 ShigellaflexneriHQRKWLMENGLPFYTNRSGKPIVSRDLFTCNKTLPPREVEPNFGAI
2110334..2110750                   PHAGE_Escher_Av_05_NC_025830: hypothetical protein; EGX88_11890; phage(gi730985110)     4.05e-32            ShigellaflexneriMTELTKEQLIEEAKLKIAITKCHPNSGMARVEGELFKIARASLEAEPIAWRYRYVKKGVMDSQGELWVGDWKYVPKKEDCNDRPNYEIQALFTAPPVPVTSEELVKAVHFYEQLKRENPPASGNQINGLTMSVKRPAN
2110963..2111142                   hypothetical protein; EGX88_11895                                                    N/A                 ShigellaflexneriMKNALQFLFVAFWLFASCMPIIFTARYMEKIDVLILMFGHINALFLGVFMAVMCIEYWR
complement(2111117..2111300)       hypothetical protein; EGX88_11900                                                    N/A                 ShigellaflexneriMLTGAFLYLPFGVHADRPQAPAVILLNDFPANRFCPAQISNTNSVRCIYRQYSMHMA
2111345..2111557                   PHAGE_Entero_933W_NC_000924: protein MokW; EGX88_11905; phage(gi9632542)             5.12e-41            ShigellaflexneriMLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(2111599..2111784)       hypothetical protein; EGX88_11910                                                    N/A                 ShigellaflexneriMPAGRGGRVIRIVKFGIVRHLFSLLAQQVPVVQADGWIVNQNDQKKQNPPKRVKCGCVEDA
2111725..2112003                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; EGX88_11915; phage(gi401817580)     3.41e-12            ShigellaflexneriMAHDTKFYNSDNSAAPASRHGRRSHAFKSDGYQHDPCTEEQAEWLIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR
2112005..2113063                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; EGX88_11920; phage(gi557307571)     3.65e-110           ShigellaflexneriMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPPQEETVVSIAVDPESPAQYLQRQKPQREEMPVYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTKADDLFVIPLCRKCHNELHAGVKDFEEKHGSQLLLLIRFLMHARNSGVLKWKA
2113064..2113429                   PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; EGX88_11925; phage(gi985761276)     3.63e-50            ShigellaflexneriMTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLNLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVCGQLVPGGRLGIKITELGCA
2113426..2114109                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; EGX88_11930; phage(gi169257244)     4.55e-102           ShigellaflexneriMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGTSIPLVSPVEFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQIAITQWAWNEFNAQSGTRKIAGKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTRHWVAMKHIFHRLDSEALLFVMRTRSKKRRHFQSKVLQK
2114144..2114265                   antiterminator; EGX88_11935                                                          N/A                 ShigellaflexneriLPILYVMAKANKTRPQAGFLCHLSRIDMVNALVEEIRVIFGA
2114308..2114383                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
2114385..2114461                   tRNA                                                                                 N/A                 CCGCCACTAGCTCATCAGGAAAGAGCGTCAACCCTTTAAGTTGAGTGTGCGAGGTTCGAGTCCCCGGTGGCGGTCCA
2114464..2114539                   tRNA                                                                                 N/A                 GCCGACTTGGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
2114543..2114617                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
2114910..2115125                   PHAGE_Entero_VT2phi_272_NC_028656: holin; EGX88_11960; phage(gi966197762)            4.88e-35            ShigellaflexneriMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGSLVLGFLTYLTNLYFKIREDKRKAARGE
2115224..2115898                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; EGX88_11965; phage(gi209447151)     1.97e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
2115895..2116245                   PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_11970; phage(gi209447152)            6.69e-34            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
2116242..2117054                   PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_11975; phage(gi209447153)            1.18e-68            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDT
2117208..2117531                   PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; EGX88_11980; phage(gi526244642)     9.85e-50            ShigellaflexneriMLLKEEEIKSHLRLDDGLYSDGDFLKLLAQAVQKKTETYLNRKLYAPEETIPEDDPDGMHLTDDVRLAMLMLVSHFYENRSTITDVEKLETPMSFRWLAGPYRIVPL
2117528..2117944                   PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; EGX88_11985; phage(gi23505454)     3.16e-61            ShigellaflexneriMKIRQSQTSATYLLPDPGELNRRIKIRLRVDEPTADFGTEPTYPESFDVWAKVAQPGAAAYQGSVQTENIVTHYFTIRFRHDITADHEVVYYGQEYRIRRIRDLNGQRRFLLLECEELRTARRRGECHESDSIFTRRL
2117910..2118434                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; EGX88_11990; phage(gi557307534)     7.73e-110           ShigellaflexneriMNQTAFLHVDFKQPEELEFNRARLRRAFVQIGRVYMRDARRLVIKRGRSGPGENPGYQTGRLARSIGYYVPKKTTRRPGLMVKISPDQKNGQGNRRFPEGAPYYPAFLYYGVRHSAYGMDKKDKRQKKHHSSTFRLAPRNNFMADVIERRRHWTQELLSRELQRSLRPVKRKHK
2118431..2118655                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; EGX88_11995; phage(gi18249907)     9.08e-48            ShigellaflexneriMKLTTIIAALRERCPRFEERVGGAAQFKAIPDAGKLRLPAAYVVPSDDAPGEQKSQTDYWQDLTEGFSVIVVLSN
2118721..2119877                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_12000; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2119920..2120261                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; EGX88_12005; phage(gi557307535)     1.93e-45            ShigellaflexneriNERDEKGQWAAYDAVHDVRRELWKALLGWMPDPQGGEIVYVGGTLLDLNRYELYYQFDFTAKYEITEEDTRQAEDVNALPDLSLLSIDVDYIDPGTGPDGDIEHHLEMRFPQN
2120271..2120432                   PHAGE_Entero_SfV_NC_003444: hypothetical protein; EGX88_12010; phage(gi19549000)     3.79e-21            ShigellaflexneriMFVKPLKGRSVPDPARGDLLPSEGRNVEESSYWFRRIAAGDVVRVKQDKAKKS
2120429..2121925                   PHAGE_Shigel_SfIV_NC_022749: tail sheath protein; EGX88_12015; phage(gi557307536)     0.0                 ShigellaflexneriMTISFNTVPSNTLVPLFYAEMNNSAANTAVTSAPALLIGHASNDAAIEVNSLVLMPSADYARQICGAGSQLARMVEVYRQTDPFGELYVIAVPEARGAAATVRVTVAGEAEESGTLSLYVGRSRVQVPVVNGDDATAVATAIKEAVNGVITLPFTASSDAGVVTLTARHKGLYGNELPVCLNYYGSGGGEILPAGLRVVTEVGAAGSGAPDLTAAVAAMGDEAFDFIGLPFNDAASINMMMTEMNDSSGRWSYARQLYGHVYTAKLGTLSELVGAGDMHNQQHITLAGYEKETQSPVDELVASRLAREAVFIRNDPARPTQTGELVGMLPAPKGKRFIMTEQQTLLSHGVATAYVEGGTLQIQRSVTTYKKNAYGVADNSYLDSETLHTSAYVLRKLKSVITSKYGRHKLANDGTRFGPGQAIVTPAVIKGELLATYRQMERAGIVENYDLFKQYLIVERDADNPNRLNTLFPPDYVNQLRVFAVVNQFRLQYSEESA
2121925..2122281                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; EGX88_12020; phage(gi557307537)     7.15e-70            ShigellaflexneriMAKIAGTCFFKVDGQQLSLTGGIEVPMNTNVRDDIVGMAGDVDYKETWRSPYVKGTFKVPKNFPVDKITTSDQMTITAELANGMVYVLSAAWLHGEANHNAEEGTADLEFHGEEGGYQ
2122287..2122616                   PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; EGX88_12025; phage(gi557307538)     1.56e-50            ShigellaflexneriMNVTEIVLKKPVTAHNEMLHVLELREPTYDEIEALGFPFIISGEGSIKLDSQVALKYIPLLAGIPCSSAAQMAKLDIFKTSMQILRFFTQSETGSTSGNDSTMLPGSGN
2122701..2124650                   PHAGE_Shigel_SfIV_NC_022749: tail tape measure protein; EGX88_12030; phage(gi557307539)     0.0                 ShigellaflexneriMADSFQLKAIITAVDKVSAPLKGMQRQLKGFKKEFASLSLGAAGAGTAVLGALALPVKSAIALESKMADVRKVVDGLDTPEAFKAMTEQVRDLSTELPMSAEGIAEIVAAGGQAGIARDELMQFTDDAVKMGVAFDTTAEESGQMMAQWRTAFKLTQGEVAGLADKINYLGNTGPASAKKISDVVTRIGPLGSVAGVASGEIAAMGATIAGMGVESEIAATGIKNFMLSLTARDSATKSQKKVLRSLRISPKKLAADMQKDARGAMLHVLDSLAKVPKEKQAAVLKALFGKESLGAIAPLLTNLDLLRTNFNRVADAQQYGGSMQKEYAARAATTENQLLLLQNQINAISSTLGETFLPSLNEGIKEMKPFLEEVRTFVRENPEVVKTIAKTGAALLTMGVAIGTLTRITKIMGSVMNMTPAKGLIALLVGGAYLIIDNWETVGPVVKKVWQEVDQVVRAMGGWEQAVKTIATVSALYIGVKAVASIRAATVAQNQWTTAAGKTGLKLKGLGKISLIGGLLELGMMAQEFEKEHPWLVKNFVADALNSGFGLNDKFDEWGKQFHDFVYDMTGWQMPRGDGYLSPDKRYTPNVSLERNQLLSLASSPATRSELKVTFDNAPPGMRVIDLPKTGDPFMKITHDVGYSPFKR
2124718..2125200                   hypothetical protein; EGX88_12035                                                    N/A                 ShigellaflexneriMIKPFLMTVAILTSCCAQAKILTNEEIVSRFISNVKTSADNDVDLDTDGFRQLRISCPSPSASGAIILRKASYEFGKSIGVFDFANNASPATMTFLIPIYKDDDFDSDTVGFTFAFKMPRGQFFVDVKENGNIRAGVNVNGESGVTYENCKLNMKDINDD
complement(2125293..2125990)       PHAGE_Entero_P1_NC_005856: InsA; EGX88_12040; phage(gi46401643)                      9.73e-56            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVRCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESYTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
2126048..2126905                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_12045; phage(gi26249410)             0.0                 ShigellaflexneriLIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2126898..2127425                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; EGX88_12050; phage(gi730985066)     5.48e-34            ShigellaflexneriMLKKRTNGSVRYCQYTSVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
2127425..2127604                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; EGX88_12055; phage(gi849255281)     2.65e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2127605..2129248)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; EGX88_12060; phage(gi169257209)     2.86e-05            ShigellaflexneriMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(2129564..2130223)       class I SAM-dependent methyltransferase; EGX88_12065                                 N/A                 ShigellaflexneriMNEKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
2130288..2130557                   PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; EGX88_12070; phage(gi428782810)     1.72e-25            ShigellaflexneriMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
2130530..2130709                   hypothetical protein; EGX88_12075                                                    N/A                 ShigellaflexneriMAGRTRHNVSEKEKPQTRRMQDVLRLAGKLSIVRVLNDFQPLPILYNCSGIIQHTGKTE
2130935..2130965                   attR                                                                                 N/A                 ACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
complement(2131635..2132285)       metal-binding protein ZinT; EGX88_12080                                              N/A                 ShigellaflexneriMAIRLHKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGVFDDTNVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYRKGYPTDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH
complement(2132543..2133178)       protein-methionine-sulfoxide reductase heme-binding subunit MsrQ; EGX88_12085        N/A                 ShigellaflexneriMRLTAKQVIWLKVCLHLAGLLPFLWLVWAINHGGLGADPVKDIQHFTGRTALKFLLAALLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGVNNLALLGKELITRPYLTLGIISWVILLALAFTSTQSMQRKLGKHWQQLHNFVYLVAILAPIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLLSLFNRLRKQAHNKLSL
complement(2133179..2134183)       protein-methionine-sulfoxide reductase catalytic subunit MsrP; EGX88_12090           N/A                 ShigellaflexneriMKKKQFLKEPDVTAESVFFMKRRQVLKALGISAAAFSLPHAAHADLLSWFKGNDRPPAPAGKPLEFSKPAAQNNLPLTPADKVSGYNNFYEFGLDKDDPAANAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFPLHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLTLMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYGFYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYADQVASLYRGLDLRENF
complement(2134292..2134705)       hydroxyisourate hydrolase; EGX88_12095                                               N/A                 ShigellaflexneriMLKRYLVLSVATAAFSLPSLVYAAQQNILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLESFFPEIPVEFHINKVNEHYHVPLLLSQYGYSTYRGS
2134838..2135509                   DNA-binding response regulator HprR; EGX88_12100                                     N/A                 ShigellaflexneriMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK
2135509..2136456                   HAMP domain-containing protein; EGX88_12105                                          N/A                 ShigellaflexneriMKRLSITVRLTLLFIFLQSVAGAGIVWTLYNGLASELKWRDDTTLINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHSDGINKIVNRTNVSDDMLNNIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKINSIIICIVAIILCSVLSPLLIRTGLREIKKLSGVTEALNYNDSRVPVEVNALPRELKPLGQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIAGNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEV
complement(2136468..2137165)       PHAGE_Entero_P1_NC_005856: InsA; EGX88_12110; phage(gi46401643)                      7.49e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(2137793..2137972)       hypothetical protein; EGX88_12115                                                    N/A                 ShigellaflexneriGYKDSDRLNYIEIGTWYYFNKNMNIYTAYQINLLDKSDYVLAHGLNTDDQLAVGIVYQF
2138066..2139294                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; EGX88_12120; phage(gi24114950)     0.0                 ShigellaflexneriMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWKDGRRSRHSDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRIYRLMRQNALLLERKLAVPPSKRAHTGRVAVKESNQRWCSDGFEFRCDNGEKLRVTFALDCCDRKALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(2139303..2140067)       hypothetical protein; EGX88_12125                                                    N/A                 ShigellaflexneriERILTDRENGEKGDNSQDTSYARVGVKGETQINPEMTGYGQFELDLEASNRHNPDQTRLAYAGLSYKDFGSFDYSRNVGVAYDAEAFTDMFVEWGGDSWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKANGDGHGLSATYTIDGFSFAGAYANSDRTDWQSGDGKGERAEVWALSTKYDANNVYAAVMYGESHNMNSDDGDVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGW
2140133..2140243                   PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfA; EGX88_12130; phage(gi557307550)            1.00e-15            ShigellaflexneriMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTE
2140312..2141480                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_12135; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
2141404..2142533                   PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; EGX88_12140; phage(gi557307549)            0.0                 ShigellaflexneriMTVGYPQTNRKIDTGKTLTRWPVFVDHFTTHSLYAWIKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDILKKGRGVLRKAVRLRYAFIRDNSCCWPVRLLCRVLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGYRKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNPDAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWWRNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRERIKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV
2142534..2142791                   hypothetical protein; EGX88_12145                                                    N/A                 ShigellaflexneriMIRGDSLWAFYTWCGYFVWAMARYIWVMSRIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGALLGGIAWYTRPRPARCRRYE
2142831..2143371                   phosphohydrolase; EGX88_12150                                                        N/A                 ShigellaflexneriMELQHWQAQFENWLKNHHQHQDAAHDLCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFVQFPAEKIEAVCHAIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALSLALFDGEARCRTGGGERYRSQGDRCVFTRWLA
2143438..2144856                   PHAGE_Burkho_KL3_NC_015266: gp47; EGX88_12155; phage(gi327198092)                    3.09e-126           ShigellaflexneriMQENISVTDSYSTGNAAQAMLEKLLQIYDVKMLVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKIKQAVALRQQEAQHGRRSR
2144837..2145307                   PHAGE_Burkho_KL3_NC_015266: gp46; EGX88_12160; phage(gi327198091)                    7.67e-42            ShigellaflexneriMVDVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQELGWRVLIVWECALRRREKLTDAALTERLEEWICGEGASAQIDTQGIHLLA

#### region 5 ####
2233397..2234565                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_12705; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAELKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
2234603..2235292                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; EGX88_12710; phage(gi169257244)     9.48e-97            ShigellaflexneriMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGASIPLVSQVAFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQITIIHWAWEEFKAHSGTRKIAEKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTGHWVVMKHIFHRLDSEALLFVMRTRSEQKAAFSKQSIAKVD
2235469..2235544                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
2235546..2235622                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTCCGAGGTTCGAGTCCTCGGTGGTGGGCCA
2235625..2235700                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
2235704..2235778                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
2236112..2236302                   hypothetical protein; EGX88_12735                                                    N/A                 ShigellaflexneriIMLLFRGEELAFSSAFSPVTIRKIMKCPPPGRRTVEKRTRQQKHWGTAFATQIAGGSSSIAA
complement(2236478..2237674)       PROPHAGE_Escher_CFT073: transposase; EGX88_12740; phage(gi26248352)                  0.0                 ShigellaflexneriMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRTYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
2237938..2238339                   PHAGE_Entero_HK225_NC_019717: head assembly protein Fi; EGX88_12745; phage(gi428782384)     6.05e-16            ShigellaflexneriMAKKDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELANMDDTDIRDKSAHPENALTGHENEVISAQPETVIQNMDDLVTVVALVTLHTDALHATRDEPLAFVPPGMAFRVFAGVAAGMTERGLARMQ
2238351..2238722                   PHAGE_Entero_lambda_NC_001416: head-tail joining protein; EGX88_12750; phage(gi9626253)     1.63e-35            ShigellaflexneriMADFDNLFDVALDLADKAIIRNMGIRAVITSGRLKGIMISGIFDDPENISLVAGGVRIEDSLPSLFVKTADILRLCRNDSLMIGRESFCVDRITPDDGGCSYIRLRREGLPGNVRAGRYYEGA
2238709..2239299                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; EGX88_12755; phage(gi428782324)     9.70e-105           ShigellaflexneriMKGLENAIRNLNSLDTRMVPQASAWAINRVAQKAVSVATRQVAGNTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNLPAIKLNTTRRRAGEGLRVGKYFFRGAFVQQLANGRWHVLRCLPEARFATGHDHQGRLRKNRLPVEVVKIPMSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
2239296..2239697                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; EGX88_12760; phage(gi428782325)     1.24e-93            ShigellaflexneriMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFIRAQAPDSELDMWMESTIFPALNDVPALSGLIDTLNPLGFNYQRDNEMATWAMAEITYQITYTN
2239708..2240448                   PHAGE_Entero_mEp460_NC_019716: major tail protein; EGX88_12765; phage(gi428782326)     1.34e-163           ShigellaflexneriMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAVTVSAP
2240507..2240893                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; EGX88_12770; phage(gi428782327)     1.67e-80            ShigellaflexneriMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEGELPEAERIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
2240902..2241231                   PHAGE_Entero_mEp460_NC_019716: tail assembly protein; EGX88_12775; phage(gi428782328)     1.92e-74            ShigellaflexneriMQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
2241203..2242150                   PHAGE_Entero_mEp460_NC_019716: tail length tape measure protein; EGX88_12780; phage(gi428782329)     6.79e-122           ShigellaflexneriMDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQARAAQLGVSSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVGQLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDTINQFKRLKDDPVNAAKALDNALHF
2242222..2243939                   PHAGE_Entero_mEp460_NC_019716: tail length tape measure protein; EGX88_12785; phage(gi428782329)     9.77e-157           ShigellaflexneriMSALAEETGKRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYPWTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNETEAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYSQQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKNELIQALTLLDVKQQELQKQTALNDLRKKRFSPASWQTKNVHCVSSTIWILPLQVWGISSGSATRHSCASGRNTGNSCNSLRMTVARKALTGRRTTGGLRRCRGASDNMKTNATGRNWKWRRATGKTVPCGRFRILRRMRIMRRERQNRCLQWHSAVPVMHWRHSVPPVSILNPSPLPCCQIWPELWHRWPCRRRASVLYSASRLMLMAVFTSLLIVATVARWLTVRRFLLLQKARVWGKRDLKPFCHCVAVLMVSWGLWRILVVQAWCLPRSTTLRSITTARTGRVRLPRWFMTSGKKRPRTLCNSRPVMVAGVEHTGAA
2243939..2244268                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; EGX88_12790; phage(gi428782330)     1.28e-73            ShigellaflexneriMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTADFEQVVN
2244268..2244966                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; EGX88_12795; phage(gi428782331)     2.09e-155           ShigellaflexneriMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
2244971..2245714                   PHAGE_Entero_mEp460_NC_019716: tail fiber component; EGX88_12800; phage(gi428782332)     2.35e-176           ShigellaflexneriMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
2245651..2246253                   PHAGE_Entero_mEp460_NC_019716: tail assembly protein; EGX88_12805; phage(gi428782333)     2.22e-102           ShigellaflexneriMARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
2246314..2249794                   PHAGE_Entero_mEp460_NC_019716: host specificity protein; EGX88_12810; phage(gi428782334)     0.0                 ShigellaflexneriMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAWYRCRYEYASRNAESGAAGGRQDCDDSCEWQHKADVCWSGRSDIHERRVPETPDGSDHYQRRSSGIFPDTWRTADGEKCRYQRRERELRDAQQRHDELSGSGKIVREPDRRSRNSGQTFPTGLPGTGEVAIRDHYRQGLRSAVSANCYSRGGVSRCTAEEQYLFVMPPDSEEKRCNLPNDPGYADIYGCYYACRSRSHDAGVFCIGMAGKWLVSHSKYQRFAGCCDEEIHSRYQYQLA
2249861..2250459                   PHAGE_Entero_mEp460_NC_019716: Lom protein; EGX88_12815; phage(gi428782335)          1.21e-79            ShigellaflexneriMRKLYAAILSAAICLAVSGAPAWASEHQSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGIISALTTRGKRTMCPGVMTTATATRLWRGGLACSLTRPNPWPLTLLMKVPAVATGALTVSSWVSVISSGA
2250523..2251937                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; EGX88_12820; phage(gi18249920)     8.24e-71            ShigellaflexneriMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYRYWPISRLTDWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFSLRDVQSIHYQGHIAPCPGCRMLMSLAQCPGFLFAHRGA
2251966..2252511                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; EGX88_12825; phage(gi730985066)     8.17e-42            ShigellaflexneriMNPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRTWNADASSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVK
2252511..2252690                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; EGX88_12830; phage(gi849255281)     9.25e-07            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2252691..2254442)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; EGX88_12835; phage(gi169257209)     6.61e-09            ShigellaflexneriMLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEEQRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLTQLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPELLETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLPENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQSLQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
2254955..2255045                   capsid protein; EGX88_12840                                                          N/A                 ShigellaflexneriMQERAAAGWTSDSASIEFPAVTDFTCLG
complement(2255042..2255290)       PHAGE_Entero_mEp460_NC_019716: DinI-like protein; EGX88_12845; phage(gi428782337)     3.18e-53            ShigellaflexneriMRFEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(2255645..2255992)       hydrolase; EGX88_12850                                                               N/A                 ShigellaflexneriSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILHAL
complement(2256019..2257215)       PROPHAGE_Escher_CFT073: transposase; EGX88_12855; phage(gi26248352)                  0.0                 ShigellaflexneriMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSKGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNHIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTFYTPQGS

#### region 6 ####
2577789..2578535                   PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; EGX88_14485; phage(gi971760361)     2.27e-10            ShigellaflexneriMIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELTDELGDNLYIAQLDVRNRAAIEEMLASLPAEWSNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ
2578624..2579310                   transcriptional regulator; EGX88_14490                                               N/A                 ShigellaflexneriMTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIRQENSDWFSEE
2579488..2579691                   PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; EGX88_14495; phage(gi410491512)     4.18e-18            ShigellaflexneriMTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLDLIRLGMN
complement(2579727..2581187)       mannitol dehydrogenase family protein; EGX88_14500                                   N/A                 ShigellaflexneriMGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQMDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLEHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRHAAYGMMLQEQAPTLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK
complement(2581276..2582295)       PHAGE_Burkho_phi1026b_NC_005284: gp59; EGX88_14505; phage(gi38707949)                2.48e-12            ShigellaflexneriSPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
2582357..2583513                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_14510; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQLPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2583538..2583717)       PHAGE_Entero_933W_NC_000924: protein S; EGX88_14515; phage(gi9632510)                9.81e-32            ShigellaflexneriMDQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGSLLFGLLTYLTEVYWQ
complement(2584025..2584213)       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; EGX88_14520; phage(gi209427766)     7.99e-34            ShigellaflexneriMAFKHYDVVRAAPPSDLAEKLTHKLKEGWQPFGSPVAITPYTLMQAIAAEGDVVVSGATEPE
2584473..2584808                   PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; EGX88_14525; phage(gi209447168)     2.29e-54            ShigellaflexneriMKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFTLTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQICPYGLKQQSP
complement(2585089..2585220)       DUF3927 domain-containing protein; EGX88_14530                                       N/A                 ShigellaflexneriVIAYCFCWHCSSRIMSVPADGVLVAGVVVVAFPLLKKKTPDC
complement(2585256..2585582)       hypothetical protein; EGX88_14535                                                    N/A                 ShigellaflexneriMVFSALSIYHSYGVGRVNIDEASGCFILRQRIDIVNAARAKAFSRLTVLFCTPDRLSGRDVIILNSDAIQRVCDEFMVANSELFALVQEYNRIARTCGMDELRITHLG
complement(2585720..2585796)       tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGAATCCAGTACAGCGCGCCA
complement(2585898..2585973)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
complement(2586118..2586939)       PHAGE_Entero_HK225_NC_019717: late gene regulator Q; EGX88_14550; phage(gi428782441)     1.74e-112           ShigellaflexneriMKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNRAEMGFSAFLGKMGISMNDRARATELLADYALSRCDRVAALRKLPAEIKPVVMRIMASYAFEDYARSAASKKQCPCCYGEKFIESIVFTNKIQYPDGKPPVWAKCTKGVYPSYWEEWKKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGYERLPSTEAFNAICEVTNQITRASWEKTVKKFYDALVTRFDIEEAWAERQLKKVTR
complement(2586954..2587310)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; EGX88_14555; phage(gi985761276)     2.55e-46            ShigellaflexneriMLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQRLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQPVSGGRLGVKIYPIMH
complement(2587323..2588372)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; EGX88_14560; phage(gi428782365)     2.08e-135           ShigellaflexneriMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPQQEKTVVSIAVDPESPESFMKRPKRRRWVNEKYKRWVKTQPCACCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLIFRFLDHAFATGVLG
complement(2588374..2588652)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; EGX88_14565; phage(gi401817580)     3.39e-14            ShigellaflexneriMARNAKYYNHDNSTVLAHTHERYSHAFKSDWYQHPSCTEEQAEWLIQCYRRRGCEVKKALSLDYRHIISVRLPYSEQPPRPSRTFQQRIWR
complement(2588755..2588970)       hypothetical protein; EGX88_14570                                                    N/A                 ShigellaflexneriMMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKNGAALINFVDARVTDGFILRDGEFVTSLQALKEI
complement(2589188..2589343)       PHAGE_Entero_933W_NC_000924: host killer protein; EGX88_14575; phage(gi9632541)      1.00e-25            ShigellaflexneriMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(2589415..2589702)       type II toxin-antitoxin system mRNA interferase RelE; EGX88_14580                    N/A                 ShigellaflexneriMAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
complement(2589702..2589941)       antitoxin RelB; EGX88_14585                                                          N/A                 ShigellaflexneriMGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
2589966..2590271                   hypothetical protein; EGX88_14590                                                    N/A                 ShigellaflexneriMSLQVSHYNMLRASHEGSQKVVVRTVITVRFVPGAAIAKSILYCAGQLFFKESGHHLTGTDTIYFVTVRLHMHNSTYSSIFCFSMSVRCTGNSGHYHLFFF
complement(2590268..2591146)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_14595; phage(gi26249410)             0.0                 ShigellaflexneriGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSHLGNISPAAFREKYHQMAA
complement(2591164..2591861)       PHAGE_Entero_P1_NC_005856: InsA; EGX88_14600; phage(gi46401643)                      6.03e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA

#### region 7 ####
2723744..2723756                   attL                                                                                 N/A                 AGATTAATGTTAA
complement(2730077..2731233)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_15330; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKGNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2731298..2731744)       PHAGE_Entero_P1_NC_005856: Ppp; EGX88_15335; phage(gi46401710)                       8.79e-44            ShigellaflexneriMKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQSLRCLQLLEQHWVRAVRGNHEQMAMDALAFQQMSLWLMNGGDWFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDV
2732166..2732246                   SAM-dependent methyltransferase; EGX88_15340                                         N/A                 ShigellaflexneriSASRGTFLHTTCYGFLYDLGLRLYLY
2732495..2734201                   E3 ubiquitin--protein ligase; EGX88_15345                                            N/A                 ShigellaflexneriMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSTSAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(2734202..2734381)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; EGX88_15350; phage(gi849255281)     2.65e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2734381..2735004)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; EGX88_15355; phage(gi730985066)     4.48e-40            ShigellaflexneriMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKLFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
complement(2734893..2735504)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; EGX88_15360; phage(gi157166064)     3.13e-08            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDIRDFSAQYSHRNVYSIPTIFHYGMFRAFITGVILRPVRGAGCSCLWRNARAFYSHIVRNAPWKLKKSLIPVIPKVAQ
complement(2736014..2736250)       hypothetical protein; EGX88_15365                                                    N/A                 ShigellaflexneriMSALKETASMLKLFNEAKTQAEVDRAVSEINSKLSSIQLEYLSLIDELTISKSNEAALKAKLTEIEKFKFQSEDCEPR
2736727..2737615                   PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; EGX88_15370; phage(gi428782357)     6.39e-71            ShigellaflexneriMLNVAIENQNGWNYSASAPHKTGAGRGNPNVTRAHSRAEAVFLCVMHSSIQIMVGCAGQSQDWPGSRVTGISTPVRLTTLMVVENLGGELINLSLEDAIMATIPALSHPDVTIENGRAVTTSVAVAEFFHKRHDNVLRAIANTECSPEFNALNFEDVTYTDTKGEKRPMYQITKNGFVFLVMGFTGKKAAAFKEAYIADVRPHGGRTAPEYPVRQDDSGRSHSGCALRRTRQYQIHRNCSRCTGLYPGYFPVLSGKTGVGSCKPERNKYDRRAAARLAPISRQPVSLIVA
2737612..2738885                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; EGX88_15375; phage(gi24114950)     0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMKNELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
2738962..2739183                   PHAGE_Shigel_Stx_NC_029120: Kil protein; EGX88_15380; phage(gi985761255)             1.11e-46            ShigellaflexneriMIAHHFGTDEIPRQCVTPGDYVLHEGRTYIASANNIKKRKLYIRSLTTKTCISDCMIKVFLGRDGLPVKAESW
2739183..2739353                   PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; EGX88_15385; phage(gi169257274)     1.04e-06            ShigellaflexneriMTKKIKCAYHLCNKEIEESKIITRPLHFMRGVIPTTEMKKYCSEICAEKDQMAHEL
2739428..2739703                   hypothetical protein; EGX88_15390                                                    N/A                 ShigellaflexneriMITSYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLNDGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI
2739803..2741218                   PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; EGX88_15395; phage(gi169257272)     3.40e-43            ShigellaflexneriMNTDKQVYPLYYEAKNDKVRKRLGIKGGFYWAEAKKLSIAISRGAVAIDDAGYDEDDFKKPVRVNLPVVDDLPPEGVFDTEFCNRYEKGGEDGITMVFIASSPSVQDKPASTDNTNVNGEDMTEIEENMLLPVSGQELPIRWLAQHGSEKPVTHVSRDELQALHIARDEELPAVTALAVSHKTSLLDPLEIRDLHKLVRDTDRVFPNPGNSSLGLMTAFFEAYMDADYTDRGLLTKEWMKGNRVSRITRTASGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARSMDVDIYNLHPAHAKRVEEIIAENKPPFSVFRDKFITMPGGMDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKTQPSGAMADEQATAETMEPDATEHHQNTQPLDAQSQVNSVDEKYQELRAELHEARKNIPPKNPVDADKLLAA
complement(2741275..2742431)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_15400; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEATSVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2742470..2742745                   PHAGE_Entero_Min27_NC_010237: host-nuclease inhibitor protein Gam; EGX88_15405; phage(gi170783625)     5.43e-45            ShigellaflexneriVSVKLRLPQSAYPIFDRIEEMAWARHYQQIVREEKETELADDLEKGLPQHLFESLCIDHLQRHGANKQAISHAFDDDVEFQERMAEHIRYMA
2742819..2743987                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_15410; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
2744097..2744336                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; EGX88_15415; phage(gi401817570)     1.83e-32            ShigellaflexneriMLNKHHGGTSNDAKRAKADLLEKTFTSRSWERIKGMDWPTIKAGRNALWIELEGVEYAFPDPQTQNETQQAGYDENIPV
2744411..2745620                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; EGX88_15420; phage(gi157166066)     2.43e-70            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELHRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGSDRYAANCILPRQRITTVSNSDIIMINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTHVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
2745668..2745835                   DNA-binding protein; EGX88_15425                                                     N/A                 ShigellaflexneriMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYNYPKINQFIKDS
2745837..2746007                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage integrase; EGX88_15430; phage(gi169257268)     4.30e-07            ShigellaflexneriMSKLPTGVEIRGKYIRIWFMFRGKRCRETLKGWEITNSNIKKAGNLRALIVHQISSG
2746019..2746031                   attL                                                                                 N/A                 CCAACTTACTGAT
complement(2746024..2746721)       PHAGE_Entero_P1_NC_005856: InsA; EGX88_15435; phage(gi46401643)                      6.03e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
2746763..2747416                   PHAGE_Escher_phi191_NC_028660: integrase; EGX88_15440; phage(gi966198071)            2.32e-75            ShigellaflexneriMAALPDPLSKTEFNALMESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVSSLGTRWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS
2747889..2748803                   metal ABC transporter substrate-binding protein; EGX88_15445                         N/A                 ShigellaflexneriMHSIKKVTMLLGCLALTCSIAFQASATEKFKVITTFTIIADMAKNVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNGVPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQRNADTYKAKITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTENGPVPTYIDLLKVTTSTLVQGIKAGKREK
2748803..2749630                   PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; EGX88_15450; phage(gi371496158)      8.48e-14            ShigellaflexneriMMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGSGKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQGDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGTVLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR
2749627..2750484                   metal ABC transporter permease; EGX88_15455                                          N/A                 ShigellaflexneriMNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFFDENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRRAHKALEDRS
2750481..2751338                   metal ABC transporter permease; EGX88_15460                                          N/A                 ShigellaflexneriMMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFSFDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNAHTQDLLSPN
complement(2751539..2752162)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; EGX88_15465; phage(gi730985066)     6.92e-41            ShigellaflexneriMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKLFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQRELKEELNSLKDLNSVRNFIVE
complement(2752113..2753302)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; EGX88_15470; phage(gi18249920)     1.64e-54            ShigellaflexneriMSVVISGALTDGAGISMSGYHIILKSRVNTPEVVMHTVADVMTGNDGEYCFHARTGKYGVYLKQDWHNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSRPKMTLMLRPALKRLTICLKSQQQAKRHNRSPGIIWGKVRPRWKHRATFTTGQKAVWRYPAHSALGVLFCLKMLSVLTLRVISWPGGMRCQVNIPLLAPTASSYPTHGLKGCSASGGLMHALRQQNRGTEPNPLLFTALTAPFITPATATGPYPDLTGKIPQKILFTESWRALSATDGETLTLAGLLLRTREKLTVIKSSDLSGGSHTEAHDWDRWGFQCPVLPPERIHPHNFSLRDVQSIHYRGHIAPCPGCRMLMSLAQCPGFLFAHRGA
complement(2753326..2753697)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; EGX88_15475; phage(gi18249919)     1.58e-69            ShigellaflexneriMVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDREKLKAYRIYAKSLQAMDFSVITDKTSYNAIEWPASPEISS
complement(2753718..2753870)       PHAGE_Escher_pro147_NC_028896: tail fibers protein; EGX88_15480; phage(gi971753728)     9.69e-20            ShigellaflexneriMLHLKNITTGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFARTQLK
complement(2753894..2754262)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; EGX88_15485; phage(gi849255282)     4.75e-24            ShigellaflexneriMPVHLSNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGT
complement(2754290..2755446)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_15490; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2755508..2755693)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; EGX88_15495; phage(gi100057)     2.85e-07            ShigellaflexneriMAGCVGEPKGSPVSVPGYANPAQFATSSIGVVGGDNFQMYGVIVMTTQISVETLSPITHNQ
complement(2755834..2756388)       DUF1133 family protein; EGX88_15500                                                  N/A                 ShigellaflexneriMIYPTNTGKSGEHLRLTTLESVWIQGKLRMWGRWSYIGGGKTGNMFNQLLASKKLTKTAVNEALRRMKKAGIEKPELEAFLREMINGKQKTWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKRKMAELLNDAHPEWCFRTCCSRVDVWLNLAEYMLYLPMRDAFSSGDLKTVC
complement(2756385..2756675)       PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; EGX88_15505; phage(gi327198620)     1.03e-41            ShigellaflexneriMVDLRKAARGQMCTVRIPGYCNHNPETSVLAHYRLAGTCGTATKPHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL
complement(2756675..2757274)       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; EGX88_15510; phage(gi169257286)     3.06e-69            ShigellaflexneriMAHIQLVKQTSSGLLLPATPESCDFLHQIKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPVGGAITPRERKLVSGFVDYLCESVGREHTPALSDAAEQYLNTVATCRTRDTALLKSFDAFREWVTIQAGFYTEHIYPDGSRGRRAKSIAFANMDETEFQQVYKSVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
2757363..2757375                   attR                                                                                 N/A                 CCAACTTACTGAT
2757408..2758105                   PHAGE_Entero_P1_NC_005856: InsA; EGX88_15515; phage(gi46401643)                      6.03e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
complement(2758123..2758374)       PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; EGX88_15520; phage(gi423262436)     6.82e-06            ShigellaflexneriMDITVCTYKPGGIVEKIKKLFSSKYAVIRRDDLSVIVEMDYFPEIPKSIMYRNGRKAIFLPMRVSDIMGNDKLLDELRVRASC
complement(2758611..2758823)       PHAGE_Entero_933W_NC_000924: protein MokW; EGX88_15525; phage(gi9632542)             1.91e-38            ShigellaflexneriMSHKCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
2758836..2758848                   attR                                                                                 N/A                 AGATTAATGTTAA
complement(2759221..2759586)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; EGX88_15530; phage(gi116222036)     1.90e-39            ShigellaflexneriMINRTKLEHILEYARQQKCIGQLCKIPPGDMVEIVEMAMRKAGNSPVTLAGWISCSDAVPAEYCDVILLDDLGNVFPGSWDKVFCPTRGGNKMAFVDKDGVEVESSTHWMPLPEPPQEVNQ
complement(2759586..2760251)       PHAGE_Escher_Av_05_NC_025830: hypothetical protein; EGX88_15535; phage(gi730985112)     1.37e-44            ShigellaflexneriMTTITKERLQWLANISGRDDIDDIDGGEIRELALIALASLEAEPVAECIVEDGGMCIDGFGEYVGHSLPDGMHELYAAPRMRQPDGWKAVAVAWKVTFTQVDQESNTFTAIYFYKAEVERWVRLHKACDFRADITPLYAAPAVPVAVNDDMAYAFHHALSDSSLGSDEIEEIKTGLRAAFANVTIQPEPIVPDEIGPNDSNTFDYVDGWNACRAAMLKGDK
complement(2760248..2760613)       PHAGE_Entero_HK225_NC_019717: HNH endonuclease; EGX88_15540; phage(gi428782431)      4.71e-44            ShigellaflexneriMALTKKQRAELRMKFGGRCAYCGCELGEKWHADHVKPVIRFDGNMLHQERDDISNMVPECHPCNLHKHCSSLEDYRRIISDGRREFLASGKGKALVRMGLVEMKSDPVVFWFEKYQEGATA
complement(2760615..2760833)       PHAGE_Entero_933W_NC_000924: hypothetical protein; EGX88_15545; phage(gi9632473)     9.64e-40            ShigellaflexneriMVTLFRKKYPRKSRTTEFLFLILFIVLMTPISPQIFVWIIGKIIEPVIELYNDVVWASFNTLHNKINPYKES
complement(2760926..2761339)       PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; EGX88_15550; phage(gi100050)     6.96e-12            ShigellaflexneriMKLAIRLQLPLAFASKERSMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
complement(2761340..2761762)       PHAGE_Shigel_Stx_NC_029120: LygF; EGX88_15555; phage(gi985761265)                    4.79e-67            ShigellaflexneriMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDGEIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
complement(2761777..2762520)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; EGX88_15560; phage(gi169257280)     1.09e-99            ShigellaflexneriMKNIATGGVLERIRRLTPPHVTAPFRTVAEWREWQLAEGQKRCEEINRLNRQLRVEKILRSGIQPLHRKCSFANYRAQNDGQRHALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLMAKGRSVIIVTVSDVMSVLHESYDNGKSGEKFLQELCGVDLLVLDEIGMQRDTKNEQVVLNQIVDRRTASLRGVGMLTNINHAAMNTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRVVK
complement(2762527..2763165)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; EGX88_15565; phage(gi169257279)     2.70e-24            ShigellaflexneriMAGVLEGRLSGGTAAEFCNSAVVALQAAGLDVCREYPVPERGDGCGGRIDIVVTDRNGVRCGIELDRNSPRQKSLLKIGAVETGICVLRRSDIARHTEQGILVIGGAVRQKKFDPLSVDLPDWLPETLWHEWVQFRQALRKPIRTELGANGAIRELEKFRQQGFTPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPLGFRG
2763314..2764536                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; EGX88_15570; phage(gi24114950)     0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMKNELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSEVAH
2764593..2765761                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_15575; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(2765853..2766263)       PHAGE_Azospi_Cd_NC_010355: hypothetical protein; EGX88_15580; phage(gi168495118)     4.06e-11            ShigellaflexneriMAALPYMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPKNRLAKIARLTNERWVDVEPSLREFFCDNGDEWMHLRIEEDLASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVGVVFEHD
2766367..2767523                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_15585; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2767520..2768002)       PHAGE_Burkho_phi1026b_NC_005284: gp58; EGX88_15590; phage(gi38707948)                2.00e-08            ShigellaflexneriMKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPILHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVLRCTGNSGHYHLFFF

#### region 8 ####
2961697..2963157                   Virulence sensor protein PhoQ; EGX88_16580                                           N/A                 ShigellaflexneriMKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFYTLAQWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE
2963238..2963258                   attL                                                                                 N/A                 ACTACACCATTAACTACACCG
complement(2963954..2964235)       hypothetical protein; EGX88_16585                                                    N/A                 ShigellaflexneriMTEAEILRLIRRVSGISQQADEQTTQPDSVTAENYARVVAEVMRRDGIQLNDADMRDIRIRVLEMLAYNRRVELYREKEKITYHWKKPERLRR
complement(2964249..2965910)       PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; EGX88_16590; phage(gi100002)     3.08e-100           ShigellaflexneriMTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDNARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV
complement(2965930..2966220)       PHAGE_Salmon_ST64B_NC_004313: terminase small subunit; EGX88_16595; phage(gi23505446)     6.18e-16            ShigellaflexneriMDDIAVKQWREKSRQLAEQGDLTPADWSNLELYCVNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPP
complement(2966276..2966458)       hypothetical protein; EGX88_16600                                                    N/A                 ShigellaflexneriMTLMNEREQNRLIRGLIRQRDAWKTQETGHKDKASGRAERITAKRLTDRDREVMECFRNR
complement(2966442..2966882)       PHAGE_Bacill_phi105_NC_004167: hypothetical protein; EGX88_16605; phage(gi22855043)     2.20e-25            ShigellaflexneriMPWQPLRRCTEPGCNRRVKSGKCEEHRRAAWRAEDARRGHRRARGYSRQWDKYRAMYLSKNPLCVRCLEKGIYTPAVVVDHIIPINGGDDVLFWPEWNHQPLCQACHNQKTKWLDPATKSKRAAGGFREEEERAANRNNWMYDADE
complement(2966882..2967178)       PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; EGX88_16610; phage(gi526244642)     8.09e-10            ShigellaflexneriMTEELITLEEVKLHCRIDGDDEDQLISGYIAASLEACQIHIGRRFDDGLAFTPAIKIGCMMFIAHLYENRQIVADNAKTRVPMTIGALWTAYRDVGGY
complement(2967175..2967513)       PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; EGX88_16615; phage(gi9634168)     1.29e-34            ShigellaflexneriMNIGRLRDRITIQTLKQTRDITGEILETWEDGHTLWASVNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVSTGPLAGRVLNIIGQPLPDAARTRLEILCREGAEK
complement(2967510..2968685)       PHAGE_Psychr_Psymv2_NC_023734: phage portal protein, HK97 family; EGX88_16620; phage(gi593779762)     1.39e-47            ShigellaflexneriMTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNTRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGIRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAREREGLSPRDGGDEFSQAWKQEVKISEGEKPE
complement(2968723..2969295)       PHAGE_Entero_IME_EF4_NC_023551: prohead protease; EGX88_16625; phage(gi589893040)     4.59e-36            ShigellaflexneriMGEKIMKSMEIRSSEITTSGAGTLTGYVVRWDKLSELLWGEFYEKFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTGRDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGVELARRSLYEQHPEKMPRADNRRWWADLAGV
complement(2969335..2970492)       PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; EGX88_16630; phage(gi23505451)     2.87e-54            ShigellaflexneriMQRIIELRQQKTAIKNQMRDMLENAEKENRSLNDAEGTKFDELRAKAESLDKDISRLEAIADEERSKPGKSSQTTDPAELRNYILTGETRALSTGVPADGGYTVIPELNTEIMRMLADESTMRRICTVKKISSNEFKQLVSAGGATVNHGEEGKAREQTSTPQINEVSIKLYPVYAYPRTTQEIVDFSDVDILSWLTGEIGDTFTETEESDLVVGDGDKKAKGFLSVPRAEKNDKERDFGTLQVIKPSESLAWTSADPLIDLKFALRKKYRKNAVVVNSTTAAKLQKVKNANGDYIWRDRLQTGDPDTLLGLPVEYLEFMPDNVIALGDFKRGYYIVDHETGVRTRPDNLTEPGFIKIFTQKYLGGGVVDSNAIKILALPEDDD
complement(2970793..2971017)       hypothetical protein; EGX88_16635                                                    N/A                 ShigellaflexneriMPMKFDEILKQRDKYHADNMETMNITDYRAFLETGALIEKDHHGFVRCALSGEMLAVNPEQTDALIEFLKGIRD
complement(2971058..2971171)       trigger factor; EGX88_16640                                                          N/A                 ShigellaflexneriMSRVGISEPHHAAGAIRLFLRHLKRYGALLAFRHGPA
complement(2971159..2971320)       PerC family transcriptional regulator; EGX88_16645                                   N/A                 ShigellaflexneriMTAQIAAYGRLVGDPLVKQSSKGTPEPPTENYADLRNAVNRTYADMGLSKLAE
complement(2971330..2971635)       hypothetical protein; EGX88_16650                                                    N/A                 ShigellaflexneriMSEPKFGEKFYKHNGRITILQISAATPGWWVETDEGSSPVASWALCVLSYPDRDVYQDILPVISTDKGMKPVDIKNMGFQCVMLTEKMMEEMKKNNAGSLH
complement(2971632..2971910)       hypothetical protein; EGX88_16655                                                    N/A                 ShigellaflexneriMHTSGKFNKSFKKRRDRTEPKYRALDMTEHALKVAIRTIDRHAGEGYAKAHPELISAFMTTTAANFATLTEREIAEAEQVTTINVKTGEVES
complement(2972199..2973947)       PHAGE_Entero_P4_NC_001609: DNA primase; EGX88_16660; phage(gi9627512)                3.75e-103           ShigellaflexneriMKLAPNVKKQPRGIKHKDTEVIIFAGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDLVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQMADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKRVINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGRAQVVGSRLIVLADQPKYTGEGTGIKKITGGDPAEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRSKPLNVNDFGKAMKPAAKVYGHEYITRKVKGVTQTNAITTDECDAFL
complement(2973944..2974243)       DUF4222 domain-containing protein; EGX88_16665                                       N/A                 ShigellaflexneriMKLKYSGLTASGNTHPKFTRGDIYRDQYGGMVTIKGVAERRITYRREGYEYDCVMPVYQFRRDFTLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK
complement(2974293..2974990)       PHAGE_Entero_P1_NC_005856: InsA; EGX88_16670; phage(gi46401643)                      6.03e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
complement(2975041..2975259)       hypothetical protein; EGX88_16675                                                    N/A                 ShigellaflexneriMRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSRIATALITLLEPVIMELQEIDLLHDRYKG
complement(2975261..2975481)       hypothetical protein; EGX88_16680                                                    N/A                 ShigellaflexneriMRDDRFNSLKQEFSGVPDDAADALSSMPELIRAAFFLLSTREYKSTGLMYISPPIMLISQRLFEKRRTGIAA
complement(2975474..2975695)       hypothetical protein; EGX88_16685                                                    N/A                 ShigellaflexneriMHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFALECIRYIATRSLNDAKNILVADCENGGGYA
complement(2975685..2975885)       host cell division inhibitor Icd-like protein; EGX88_16690                           N/A                 ShigellaflexneriMVAVNHIPHLVHTQTAFVWRFLALSAGESQIIHVTAWTEREARSRCPSGCVAVFAARIRQGETYAQ
2976015..2976194                   hypothetical protein; EGX88_16695                                                    N/A                 ShigellaflexneriMSTHKNERRGNPPFQFRLDPDLREKMEKAQQQDGDDSLAAWIKRIIRKELQQRGIEPKG
complement(2976554..2977882)       PROPHAGE_Escher_MG1655: IS4 transposase; EGX88_16700; phage(gi16132099)              0.0                 ShigellaflexneriMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA
complement(2978137..2978325)       PHAGE_Entero_P4_NC_001609: transcriptional regulator; EGX88_16705; phage(gi9627517)     1.17e-10            ShigellaflexneriMLSTDRFIREKECEKLTGLSRSCRYRLEKAGQFPSRRKLGGRSVGWSLSEVLAWKDSCKAVH
complement(2978700..2979928)       PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; EGX88_16710; phage(gi399528791)      2.48e-13            ShigellaflexneriMSRALNKLSDTQLRKINGTPAQKTAFLNDGGNLSVRHSTSGLLTWYFTYRAGTGRGAPPERIKLGNYPDLNLKSAREKAAQCRAWLAEGKIHVMSLITPYRKRSRRLAMRSPTGLSRTQRKTAWIMPPKSALIITYSTLVLCRWINASYGTGWPVLTRWQSERLLLPDSCYRRANRRLSSAGGGAMQSATFLMIVWRTLGKNRIASVSAPKNWANYCRHWTKKYSPPTTSRSASLCSDAGRNGYRRSASGILPKCSGPCRKNTAKRRWQYSGPYRKQYCRSSRSWWSRTGTRAYCWGKNRKQACRSTADRTGGITLTGHYMTSGAPLQRCTIAWILTSWSSLQATRCQECSEFIIIPVIWMLNAMRWICGRSGGYWREHMKTPRYQPEENAA
2979955..2979975                   attR                                                                                 N/A                 ACTACACCATTAACTACACCG

#### region 9 ####
3184984..3184995                   attL                                                                                 N/A                 TGCCTGATGCGA
3192177..3192260                   PHAGE_Entero_IME10_NC_019501: integrase; EGX88_17915; phage(gi422934296)             7.37e-12            ShigellaflexneriIYNHAQYLDKRREMMQWWADWLDEKAS
complement(3192293..3192990)       PHAGE_Entero_P1_NC_005856: InsA; EGX88_17920; phage(gi46401643)                      2.57e-59            ShigellaflexneriVASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSRPRAYSRAVTSSSARKWTNSGAMSGLNRASAGCFTRMTGPGRRLLRTSSVNARWRRWGVLACCHPLTWYGRMAGRCMNPARESCTSASDIRSELSGITIGSTWHGWDGSRCRSQNRWSCMTKSSGIITNTINAA
3193108..3194109                   PHAGE_Salmon_SEN34_NC_028699: acyltransferase 3; EGX88_17925; phage(gi966201446)     5.17e-05            ShigellaflexneriMHKSNCFDTARLVAAMMVLISHHYALSGQLEPYIFGFESAGGIAVIIFFSISGYLISKSAIRSDSFIDFMAKRARRIFPALVPCSVLTYFLFGWMLNNFSTEYFSHDIIRKTISSILMSQAPDADITSHLIHPGINGSLWTLPLEFMCYIITGVAVALLKSGKTFIVILLIFVSLSLVESVSENKDVIFSIPVWLYPLRGMAFFFGATMAMYEKSWNVSNVKISVISLLAMYAYASYGKGIDYTMACYILVSFSTIAICTSFGDPLVKGRFDYSYGVYIYAFPVQQVIINTLHIGFYPSMLLSAIVVLFLAHLSWNLIEKRFLTRSSPKLSLN
complement(3194400..3194849)       PHAGE_Shigel_SfII_NC_021857: tail fiber assembly protein; EGX88_17930; phage(gi526244658)     1.12e-103           ShigellaflexneriMVHLLMRITLQWDINEMSYFYSASTNGFYSTEFHGTNIPDDAVEISESEWKTLINSQSVTKMITCGENGHPVIVDRPSPTPEQLALINDEKKSALIAEATNVIAPLQDAVDLGMATDDETKLLLAWKKYRVLLMRVNVVKPEWPMHPNK
complement(3194806..3195597)       PHAGE_Salmon_SEN34_NC_028699: tail fiber protein; EGX88_17935; phage(gi966201444)     1.31e-78            ShigellaflexneriMAINNFKPFALDPNANVTSQADWEALPALLSGFTAGKASSAQVNKAIRQASFIAAALAQYTANKSRLDVLDDGDLNGFISKMGTAFGKDFQALDATLSALAGLATGANKLPYFTGNDTAAQTDLTSVGRDIIGKNTIADILTYLGLGEAAKRNVGTGANQIPDMSLFASSNTATAAAQKFPSGLILQCGQLNGSPNVSSTYGMRFPMTFSRVLAVTVTLNVTGASGQPTVSATNVHNTGFDITVSPGSGYGSSADAYYIAMGY
complement(3195597..3196277)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_17940; phage(gi966201443)     3.80e-137           ShigellaflexneriMSKYTELITNYHATKPLFFDHIDLSTRPLIDVSSTMSGLITAFDIDTAVGVQLDILGLWIGRSRIVSQPISGVYFSWDTDGLGYDQGIWKGPYDPDSGYTTLSDETYRIILKAKIAINNWDGRNDSLPPILDAATEGSGLRMQIVDNQDMTISVWVFPETDISDVSLELIAAIKQGYLTVKAAGVWAGDVETPSVEAPSEGSKFFGFDMDNEYIGGFDVGAWGTIL
complement(3196274..3197473)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_17945; phage(gi966201442)     0.0                 ShigellaflexneriMALNLDTLGLSATVTAQGISAPDYQTILDTLTSYFRQIYGSDAYLEPDSKDGQMVALVALAVHDANNTAIGIYNSFSPTTAQAAALSSNVKINGITRKVATNSTADLLLTGTAGTTITNGSARDKNGIIWNFPASVAIGVDGTVLVTATCANSGSVAALAGTITTINTPTRGWVSVTNPVAATVGSPAETDAELRIRQGQSVALPSITPFEGVDGAIANVAGVTRHKLYENDTGATDSNGLPPHSISAIVDGGDVTEIAQTIRGSKGQGTATYGKTSVTVPDTYGNPHVISFSRSTDVPIFVAITLKVFTGYTSQIGEQIKQAVADYINGLTIGDDVLLSRIYSPANLGVVSGGNARYYDITDLLIGKSSGSVSASNIDIAYDASASCSTANISITVTS
complement(3197741..3198421)       PHAGE_Salmon_SEN34_NC_028699: baseplate assembly protein; EGX88_17950; phage(gi966201439)     8.59e-113           ShigellaflexneriMPIPTQSQIGGEQQTAQAIADSVSTQMRVAMPGIIQSFDPETVTCTVEVALRGIVGDGSTELKPLVDVPVIFPRGGGCTLTFPVKEGDECLLIFADRCIDFWWQSGGVQETVDPRQHDLSDAFAIVGPQSQARKISGISTSAAQLRTDDGAAFVEVAAGHNITIKTPGQLTATAEGGTTITSPTITLNGNVTINGNLSQGMGESGGTATMLGPVMVTNDVTASGISV
3198644..3198934                   PHAGE_Clostr_phiCD146_NC_028958: hypothetical protein; EGX88_17955; phage(gi971820170)     1.78e-08            ShigellaflexneriMGFRFRKRIRIAPGLAINISKSGVSTSIGGKGSTINIGKKGVKMTNGLPGTGLSHTTNLYSPGKSTEKKQLTHKQKIIRNILFVIIVFIIIKAQYF
complement(3198958..3199302)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_17960; phage(gi966201437)     9.24e-09            ShigellaflexneriMRHLLCTVTVFAVLISAPAFADQQCGDFKIHWADDGLARINGAKPEMQKITFLKNKGDYNNIKMDWRMATDQPGRWVGLEYINRNGKAILNAQWLQASMDSPRQYATYDCRKVK
complement(3199315..3200379)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_17965; phage(gi966201436)     2.05e-154           ShigellaflexneriMSLNWMRHFELQLLDQNGQGVSLSDFKVTFQIEWADTRWPRVANVKIYNLSTDTTNKILGQEFAKIRIIAGYDGIAPDVDASQVGVSREISPDQIGQVNGQNYGLIFDGDIRFTVTGKDNITDSWVLIQAIGDHEAFLYATTITTLAAGYTVADLHRATMQDFNAFGVTQGITGDFPDTVFPRGRAIYSSSRNVMDNIAAQCKATWQLVDGQVQMVPEDKYIHEAIVLNANTGLIGMPQQTMGGGVNVRCLINPNIRINGLIQLDQASVYRATLGNSEIAQSPGRITETEENGNRVLTGTTSQAASIATDGVYIVKAIDYTGDTRGQAWYMDLMCFARGARDLYSPKAMQGTTN
complement(3200382..3200687)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_17970; phage(gi966201435)     2.47e-27            ShigellaflexneriMQFNEIPLSPDNQQFRVLLGNTTYTLRIIWRDAAGWIMDVMDSGGAALLSGVPLLTGVNLLRQYPQLGIDGALVVATDKGAPDEPTKTNLGTYSHLIFVQE
3200897..3202065                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_17975; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(3202070..3202543)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_17980; phage(gi966201434)     7.18e-76            ShigellaflexneriMDILSAIFRQQSRRIGILIPSVVVSEKHSDALEITEHPVEKPTTNSASGFIADHAYKRPSEVTMECGFAGGGSLLDFIDTSSIGLSAGLSPKETYQQLLDLQSSRVPFDVVTGKRVYSNMLVRAIEVTTDKTSENVLNCTLTLREVIMSQTQSVSVAE
complement(3202543..3204558)       PHAGE_Salmon_SEN34_NC_028699: tail tape measure protein; EGX88_17985; phage(gi966201433)     0.0                 ShigellaflexneriMSGNADTIKDFLVSLGFDIDQAGANKFEAVLKGVTANVLKVGAVVKGAALSIVGFTTQIANGLDKIYWASQRTGASVQGIKALGYAASQTGASAESAMSSLEGLAGFMRSNPGAEGFLNRLGVQTRDASGKMRDTAAIFTGVGQKLNNMPYYRAKQYAQMLGIDENTLMAMRRGMGQLSSEYALTAKRIGFNAESAAKQSNIFMTSMRNLTMTLGQAKDKIGSNLAGGLAGSIDNFRRQILDNWPKIEAVITKIIKGILWAGDAITRVLWRTGQAVEGVIAWFKKLNPATQQLIALFSGLLVAWRLLNTAFMSSPLGMITTLIIALGLLLDDYQTWKEGGKSLIDWGKWKTEIDQAVKMIGDLKKTVTDLTKALAKLLGIDPKSWSLKWDFSNFISQMGEFGKMLNMIADLLNAIKDGRWADAASIGKQMLNQGSENPSAMPMVTDSANGTADWIKEHWGFDPRSVGRTVRGWFGDDEPEQLGQSVKRPQPTKAGSELLGWMQPMFTNLEQLYRLPEGLLRSVAITESGGNQFAVSGAGAKGLFQFMDGTARDMGLRGNDVFDPEKSAQAAAKYLSQLLRQNGGDLSKALASYNWGIGNVKRYGMGLMPQETRNYIPKVMSNMPTSAPVIQQETNINIHGVFDPREAARLTVDRQKGVNSQLTQQLPAGPR
complement(3204548..3204676)       lytic transglycosylase; EGX88_17990                                                  N/A                 ShigellaflexneriMDQKDLNSGAVDLCRIALLNDYLDMREDNDARVDKWRAANER
complement(3204736..3205161)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_17995; phage(gi966201432)     2.02e-45            ShigellaflexneriMEFEIKGVKYRTAKLSVFEQLKVSRKLLPVLAGMVSDFRSVQEKISSKDTEGAMATILPKIANAVSDLSDGDVDAILFPCLSVVSREHMKGWVPVCQHGEMAFDDIDLLTMLQLVARVVADSLGNFLQGLPTSETPTPLAE
complement(3205165..3205605)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18000; phage(gi966201431)     7.14e-80            ShigellaflexneriMATYSFLDVTASLTGPTGVIDLGQGSANSEEGITQTMGGNKNTMTIGADGEVMHSLHADKSGTITVTLLKTSPVNKKLSLAYNAQSQSSATWGNNVIVIRNTASGDISTARSCAFQKQPDFNNAKEGGTVAWVFDCGKIDQLLGEF
complement(3205616..3206761)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18005; phage(gi966201430)     2.95e-179           ShigellaflexneriMAQGLPVSNVVNVDVIMSPRAASGRNFGALLILGPSTIIPVSERIRRYSAAEDIGKDFGVESPEYKAAQVFFSQSPKPQEVFVGRWVKTKGDSEQATPETLEQAVNAMLDYTSWYGLGIADDEDIPDADWLKVAAAIESSSVSRILAITTSDEKCLQTASSDDLASKLKTAGYSRSFIQYSSGNKYAALSAFGRAFTVNFNGSNTAITLKFKQEPGVGYETLTVSQASALDAKNCNVFVYYANDTAILQQGVMANGDFFDERHGLDWLQNYVQTNLYNLLYTSTTKIPQTDAGVTRLLSNVEQSMDQSVTNGLVAAGVWNGGPIGQLNSGDTLTKGYYVYAQPLSEQAQADREARKAPLIQVACKLAGAVHYADVQINVVR
complement(3206765..3207322)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18010; phage(gi966201429)     1.52e-96            ShigellaflexneriMGELRLSNNTSTERGWLIPTSGDPDYDEALDRLLSQWMRNVSGLSAGMVRPRWQKEQPPLLPVETNWCAFGVIGWSGDDSPAFTRQTDDGSQLWRHETIECMASFYGPAGMVYASRFRDGISVPQNNAALNALGLSLGDYTGLFPELINQQWVRRYDMTVRLRRKVVREYGIKSLVEAPVIFFGD
complement(3207297..3207686)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18015; phage(gi966201428)     3.78e-87            ShigellaflexneriMPTLDVTDVLFDPDFCDFNLWVTRRVQTVDEDGIGSDSEVKKQFAGVVTVDRSLENRRMQAGQVISGAILIVTTERLTQGQTGRDADIVTYQGRDYRVTFVDPYTAYGAGFVQAHCELMPFDGGTPVEQ
complement(3207673..3208227)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18020; phage(gi966201427)     9.71e-106           ShigellaflexneriMSFKSGVTTRVDNAQAILDALRSLTKKDVLVGIPEEDSEREDVPFGNAGIGYVNEYGSPAQNIPPRPHLIPGVKSVEEQTVPQLKAAAQAALDGNAAGAERALNRAGTLAANGVRRYMTITGFTPLADSTVEARARRGRKGATLELARRVAGESPGTDLAKPLIDTGQYRRAITHVVRDKDADS
complement(3208224..3208631)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18025; phage(gi966201426)     1.91e-92            ShigellaflexneriMPKNQSLPAVSDFRRDFPQFADPAKYPEAQIQFRLNLADELLSENVTGKDLFPYFAGLFVAHYMTLWAADSRAMLVGGPGGSTNGVQSSKSVDKVSVSYDTSATLNPDAGFWNNTRYGAEFYQLITMFGAGGRQL
complement(3208597..3208818)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18030; phage(gi966201425)     1.07e-17            ShigellaflexneriMAKNNAVIHVHTPFVLTLPDGSRREFVKGRHAVEEDVATHWFTRAHAEVSVGKATDARNEVKNAKESKPASGK
complement(3208861..3209802)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18035; phage(gi966201424)     0.0                 ShigellaflexneriMITFDQATVDSSGAFLIGELERLDQTLNLPLAGYTWTRDIQLREDVSIADDISSWTNTSFAAAGTGANPNGKNWVGKDSTAIAGVNVDIGKSGNPLNLWGMELGWTVVELAAAQQVGRPIDTQKYDGMQLKWQMDNDEQVYVGDSALNLKGLVTLDGVPVNNAAKTWAISTPDEIRASINQVLSDAWAASGYSVVPRDLLIPPEQFALLSSIIVSSAGNQSLLTYLQTNTISYHQNGVPLNIRAVKWLKGRGVGNKDRMVAYTNDKKYVRYPLVPLQSVPIQYRGLYQIATYYGKLGAVEPVYKETISYVDGI
complement(3209814..3210317)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18040; phage(gi966201423)     1.93e-94            ShigellaflexneriMTAYLYRMPVGIAGAISRPQDLTVEPVVLKSDNAFAAYGLAGKYDADGFFVPLADGDTADKVKGIYVRPYPTTSQPDMVRQVGTGKNFPGDAMKRGYVTVNLGSDFDASTIKKGDPVYVVVSTDESIKVPLGGFMSTSVSGKNVVLTNAEFTGAGDANGNAEISWKI
complement(3210322..3211542)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_18045; phage(gi966201422)     0.0                 ShigellaflexneriMKYFFNTRLGETRYQLADGSLLCKDVPIGRTGKQLYGAADLPNLKPDKLGEIVVTRSPEQVFHPATLASFEGMSITILHPEDENGNVRLVNPENWKELAVGHLQNVRRGTGDHSDLMLADLIVKDENAIQLIEDGLREVSCGYDAEYEQTEPGKAEQVDITGNHVALVPKGRAGNRCAIGDRDTMANQKKSWWTRMRTAIKTGDADTMNELVESAPASVTGDEGDLPQGVNLNINLSPQQPLPDKVPEMGGGPTGDSDDDLKTLLKALLAKLEGNATGDNDNKPDDNPTGDGEDDEEETTITGDSAWRAEVIVPGIDLSRKMKPTVFKREVLASADKTLVRQVVGDADIRKLPKQSVDMAFNAVSEIAKGRNTRSTTGDAQRPNMGMTSIASLNKQNAEFWSNRKG
complement(3211557..3212294)       PHAGE_Salmon_SEN34_NC_028699: putative head morphogenesis protein; EGX88_18050; phage(gi966201421)     1.00e-144           ShigellaflexneriMATNRQSRQAEIRYRTSLRQIARAVGDIVNGRYDGSNDSVTEIMDALERYSEIITPWATKVAENFTADIARQNEKQWRQHSRNISAELRNMVDRAPVGQVMKSIVAEQIKYIKSLPLEAADRVYDIQNKAIEAVVAGGRAEPFAKEIAASGDVSRSRANLIARTELGRATGALDQARALSIGSNGYIWRTAEDGDVRHSHREMEGKFVEWGKPPTLDGMTGHAGELPNCRCYKEIVFPNPHSYLA
complement(3212182..3213648)       PHAGE_Salmon_SEN34_NC_028699: putative portal protein; EGX88_18055; phage(gi966201420)     0.0                 ShigellaflexneriMARNKQATRRTAQATADGYENFVARVGMQTPNQHSASTYRANFTSRNRMLVEWSYRSSWIIGEAVDAIPDDMTRKGIRITSEIDAKDRGILESQLDELQIWDALNDVLKWSRLYGGAVGFIMIEGQAPMTPLRLETIGEGKFKGILPLDRWMINPVLTRRIKEMGPDLGKPEFYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVERIWDRLTAFDSATVGAAQLVYKAHLRTYSVEKLRELIALGGPAFEALLKNIDLIRQFQSNEGMTLMDSRDKFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGFSTGDADLANYYDRVSSLQERRLRLPMRRILDIMHRSELGKPLPDDFTFEFNPLWQMSDVDRSTVAVNTTNAISTALGDGLMTRKAAMTDLRENSDVTGIGASITDEDIENAEDEAPPGIGELGDKPPEPPGGDPISNEPTADSAGGRGYRKWALRWFK
complement(3213648..3215270)       PHAGE_Salmon_SEN34_NC_028699: terminase large subunit; EGX88_18060; phage(gi966201419)     0.0                 ShigellaflexneriMPLPFPFDFKHPDYQMVFEWWMERLQRIRQNPEILPALKQFYRTNPAQFIIDWGMTTDPRNIDYGLPVTIPFLLFPKQEEWIHWIMERWGNRENGITEKSREMGLSWTAIGLACSLCLFNKEMVIGFGSRKEEYVDSTGDPKALFWKARKFVETLPVEFRGSWDEKKHAPYMRVEFPETGAVIKGEAGDNIGRGDRTTLYLVDESAFLQRPLLIDAALSQTTRCRIDLSSVNGMANPFAQKRHGGKIPVFTFHWRDDPRKDEEWYRRECEKIDNPVVVAQELDLNYSASAEGVLIPSEWVQAAVDAHIKLGIQPTGKRLGAMDVADEGRDKNSFSTRHGFLLENVREWSGVGSDIYQSVEKVFGFCEQDNLEEFRFDEDGLGAGVRGDARAINELRNAARRPSILATPFRGSGAVFDPDDEAVRGDNGQAARLNKDFFANAKAQSWWRLRKLFQNTWRAVVEGMDYNPDEIISISSSMALKDKLIIELSQPTYSINGVGKIVIDKQPDGTRSPNLADSVMISYAPMNSALNIWELLGRQA
complement(3215273..3215827)       PHAGE_Cronob_phiES15_NC_018454: terminase small subunit; EGX88_18065; phage(gi401817591)     1.89e-67            ShigellaflexneriMKQLTPKQELFCREYLKDLNATQAAIRAGYSEKTARATGSENLSKPDIADRIAELKAERNEEVGIDAAYVLRRLTEIDQMDVLDILLANGELKQIKDWPKVWRTTLSGMDVVEMASADSAALLKKIKWPDKVKNLELLGRHVSVQAFKDNVKNEVTGADGGPVRTEITNLTPEQAAEAYRKMMG
complement(3215829..3216155)       PHAGE_Acinet_phiAB1_NC_028675: putative HNH endonuclease; EGX88_18070; phage(gi966199261)     1.51e-22            ShigellaflexneriMPLHIKDLVVRHKCDNPSCVNPDHLIIGTVADNNRDRSRRGRNSYPDRSGEKNGMAKLKECDVICIRREYVRGSVGNGLRSLAKRYGVSTTMIADIVNHRNWSNVSEV
3216217..3217385                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_18075; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3217395..3218150                   PHAGE_Entero_HK022_NC_002166: integrase; EGX88_18080; phage(gi9634144)               0.0                 ShigellaflexneriIRRKLPDKPLADISTKEVAAMLNTYVAEGKAASAKLIRSTLVDVFREAIAEGHVATNPVTATRTAKSEVRRSRLTANEYVAIYHAAEPLPIWLRLAMDLAVVTGQRVGDLCRMKWSDINDNHLHIEQSKTGAKLAIPLTLTIDALNISLADTLQKCREASSSETIIASKHHDPLSPKTVSKYFTKARNASGLSFDGDPPTFHELRSLSARLYRNQIGDKFAQRLLGHKSDSMAARYRDSRGREWDKIEIDK
3224659..3224670                   attR                                                                                 N/A                 TGCCTGATGCGA

#### region 10 ####
3436822..3437082                   PHAGE_Erwini_vB_EamM_EarlPhillipIV_NC_031007: chaperone for long tail fiber formation; EGX88_19110; phage(gi100168)     2.06e-08            ShigellaflexneriMKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMLGTATIYK
3437347..3437676                   TonB-dependent receptor; EGX88_19115                                                 N/A                 ShigellaflexneriMENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQANADDTLVVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGNASQLSN
complement(3437665..3438993)       PROPHAGE_Escher_MG1655: IS4 transposase; EGX88_19120; phage(gi16132099)              0.0                 ShigellaflexneriMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA
3439058..3441067                   PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; EGX88_19125; phage(gi100064)      2.12e-11            ShigellaflexneriSLTDRHYPGVGAFFAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSAGAAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTSRTANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSRIHPGGLTRNGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPAGVAKGSPVTTVDTAKSGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQATDDISVGAGARYIGSIHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLNVYNLFDTDYVASINKSGNRYHPGEPRTFLLTANMHF
3441109..3441786                   PHAGE_Synech_S_PM2_NC_006820: PiuC; EGX88_19130; phage(gi58533039)                   5.10e-24            ShigellaflexneriMMYHIPGVLSPQDVAHFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSALYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENEEILSLLNLYHNLLREWSEI
3441860..3442126                   PHAGE_Cronob_vB_CsaP_GAP52_NC_019402: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; EGX88_19135; phage(gi414087569)     1.59e-22            ShigellaflexneriMASAWANDDAVNEQINSTIEDAIARARGEIPRGESLYECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDRQLR
3442391..3442651                   PHAGE_Erwini_vB_EamM_Kwan_NC_031010: short tail fibers; EGX88_19140; phage(gi100183)     1.14e-07            ShigellaflexneriMKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSGTAVIYK
complement(3442880..3443965)       malate/lactate/ureidoglycolate dehydrogenase; EGX88_19145                            N/A                 ShigellaflexneriMESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGSWQAICDAARQIGMSEETLQAFCQQLAS
complement(3444106..3445068)       DNA-binding protein YbiB; EGX88_19150                                                N/A                 ShigellaflexneriMDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALCLSSVSHPEYIGRVAKFFSDIGGWALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDPAGSELLPQAKDPETTAQWTERCLAGSEAIPESLKIQMACCLVATGEAATISDGLARVNQAF
complement(3445096..3447246)       PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; EGX88_19155; phage(gi100158)     6.11e-26            ShigellaflexneriMALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVTRREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDELLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEVQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFEPSIDNEEQHIAEMAAFFREQVESKKYLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR

#### region 11 ####
3470857..3472146                   PHAGE_Mycoba_Alice_NC_028986: gp185; EGX88_19280; phage(gi971763384)                 4.15e-06            ShigellaflexneriMTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKTQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
3472205..3472681                   kinase inhibitor; EGX88_19285                                                        N/A                 ShigellaflexneriMKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDVERIDVDEGASGAMVGFNVHFHSLASASITAMFS
3472802..3472814                   attL                                                                                 N/A                 AAAAATCATTAAT
3472996..3473076                   PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; EGX88_19290; phage(gi16130281)     1.76e-09            ShigellaflexneriIYNHAQYLDKRREMMLWWADYWLDEKV
complement(3473086..3473172)       PROPHAGE_Escher_CFT073: transposase; EGX88_19295; phage(gi26246249)                  1.98e-10            ShigellaflexneriQEELLGMWLAENEGVKFWLNVLTELKKRG
3473264..3475027                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; EGX88_19300; phage(gi169257209)     2.97e-09            ShigellaflexneriMKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGAATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPPSLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPDLPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRLPELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(3475028..3475207)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; EGX88_19305; phage(gi849255281)     9.25e-07            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(3475207..3475830)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; EGX88_19310; phage(gi730985066)     3.68e-43            ShigellaflexneriMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRTWNADASSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVK
complement(3475781..3477195)       PHAGE_Stx2_c_1717_NC_011357: putative tail fiber protein; EGX88_19315; phage(gi209447198)     2.73e-30            ShigellaflexneriMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKMTLMLRPALKWLTICQKSQQQAKRHNRSPGIIWGKVRPRWKHRATFTTGQKAVWRYPAHSALGVLFCLKMLSVLTLRVISWPGGMRCQVNIPLLAPTASSYPTHGLKGCSASGGLMHALRQQNRGTEPNPLLFTALTAPFITPATATGPYPDLTGKIPQKILFTESWRALSATDGETLTLAGLLLRTREKLTVIKSSDLSGGSHTEAHDWDRWGFQCPVLPPERIHPHNFSLRDVQSIHYQGHIAPCPGCRMLMSLAQCPGFLFAHRGA
complement(3477259..3477858)       PHAGE_Entero_BP_4795_NC_004813: outer membrane protein Lom precursor; EGX88_19320; phage(gi157166058)     2.45e-134           ShigellaflexneriMRKLYAAILSAAICLAVSGAPAWASEHQSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
complement(3477926..3481406)       PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; EGX88_19325; phage(gi148609400)     0.0                 ShigellaflexneriMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAWYRCRYEYASRNAESGAAGGRQDCDDSCEWQHKADVCWSGRSDIHERRVPETPDGSDHYQRRSSGIFPDTWRTADGEKCRYQRRERELRDAQQRHDELSGSGKIVREPDRRSRNSGQTFPTGLPGTGEVAIRDHYRQGLRSAVSANCYSRGGVSRCTAEEQYLFVMPPDSEEKRCNLPNDPGYADIYGCYYACRSRSHDAGVFCIGMAGKWLVSHSKYQRFAGCCDEEIHSRYQYQLA
complement(3481467..3482069)       PHAGE_Entero_cdtI_NC_009514: putative tail component; EGX88_19330; phage(gi148609399)     2.11e-119           ShigellaflexneriMARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
complement(3482006..3482749)       PHAGE_Entero_mEp460_NC_019716: tail fiber component; EGX88_19335; phage(gi428782332)     2.35e-176           ShigellaflexneriMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGAIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
complement(3482754..3483452)       PHAGE_Entero_lambda_NC_001416: tail component; EGX88_19340; phage(gi9626261)         9.76e-157           ShigellaflexneriMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
complement(3483452..3483781)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tip assembly protein; Lambda gpM homolog; EGX88_19345; phage(gi169257220)     7.35e-57            ShigellaflexneriMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTADFEQVVN
complement(3483781..3484610)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; EGX88_19350; phage(gi169257221)     1.19e-95            ShigellaflexneriMGDKQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKRYWQELEVAQGDWKNGAMRAFQNFTADADNAAGTAEQMFTVAFSSAGNALATFCTTGKLNFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGSGMVMFAPQYNIEINNDGTNGQIGPAALKVVYDLGKKRPRTLCNSRPVMVAGVEHTGAA
3484575..3484766                   hypothetical protein; EGX88_19355                                                    N/A                 ShigellaflexneriMCLVALPLLIPHTCSGNIQIVLLTQCTFFVCQLAGQLNRFFLRSLSAVCFCSSCCFTSSSVSA
complement(3484876..3485134)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; EGX88_19360; phage(gi169257221)     7.38e-27            ShigellaflexneriMNETEAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYSQQQAQVEGQIAAARQSAGIATERMA
complement(3485140..3486151)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; EGX88_19365; phage(gi169257221)     3.24e-133           ShigellaflexneriVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVGQLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDTINQFKRLKDDPVNAAKALDNALHFLNATQLEQIRVLGEQGRSSDAARIAMSALAEETGKRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYPWTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALA
complement(3486489..3486818)       PHAGE_Phage_Gifsy_1_NC_010392: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; EGX88_19370; phage(gi169257222)     2.70e-42            ShigellaflexneriMQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
complement(3486827..3487213)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail assembly chaperone; Lambda gpG homolog; EGX88_19375; phage(gi169257223)     1.16e-40            ShigellaflexneriMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEGELPEAERIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
complement(3487271..3488011)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major tail subunit; Lambda gpV homolog; EGX88_19380; phage(gi169257224)     8.42e-106           ShigellaflexneriMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAVTVSAP
complement(3488022..3488423)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; EGX88_19385; phage(gi169257225)     7.29e-66            ShigellaflexneriMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFIRAQAPDSELDMWMESTIFPALNDVPALSGLIDTLNPLGFNYQRDNEMATWAMAEITYQITYTN
complement(3488420..3489004)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-tail assembly protein; Lambda gpZ homolog; EGX88_19390; phage(gi169257227)     3.38e-100           ShigellaflexneriMKGLENAIRNLNSLDTRMVPQTSAWAVNRVAAKIVSVATRQVAQNTVAGDNQVKGIPLKTVRERVRLLKASPSGKMYARMRVNRGNLPAIKLGTAQVRLARSRHGSNSRHRGSVLKVGKYLFRDAFIQQLANGRWHVMRRIDGKNRYPIDVVKIPMSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
complement(3488991..3489368)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; EGX88_19395; phage(gi169257228)     4.39e-34            ShigellaflexneriMDGFDNLFDAALAGVNEVILRDMGISAVITSGELEGTHLTGVFDDPESISFVAGGIRLEDSSPCLFVKTADISQLRRQDTLTIGDDSFFVDRITPDDGGCCYIRLRRGSPAPQNNARMRRYDEGT
complement(3489380..3489766)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; EGX88_19400; phage(gi169257229)     3.14e-12            ShigellaflexneriMATKEENLKRLCELAERLGREPDVSGSAADIAQRVAELEEELGDAGEVAEPDTYSPSKDDPTAHKGESVPEQPGIVTGDETGQVTVVALATLHTKCNGSVIFVSPGTSFRVSAEVAASMAAGGLAKRQ
complement(3489818..3490846)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major capsid protein; Lambda gpE homolog; EGX88_19405; phage(gi169257230)     0.0                 ShigellaflexneriMGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDKITGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVNPKHEFNYQQAVERLPGEDPAQLNDPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGEQFETVEVDFGRSVGNNITQAGGTEWSAQDRDTFDPTHDLDAYCDFASGTINIAIMDGKVWRLLNGFKLFREKLDTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPDGTLVLGNTAAEGIRCYGAIQDAQALSEGVVASSRYPKHWLTVGDPAREFTMTQSAPLMVLPDPDEFVVVQVK
complement(3490904..3491251)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head decoration protein; Lambda gpD homolog; EGX88_19410; phage(gi169257231)     6.24e-54            ShigellaflexneriMVTKTITEQRAEVRIFAGNDPAHTATGSSGISSATPALTPLMLDEDTGKLVVWDGQKAGHVVGILVLPLEGTETVLTYYKSGTFATEAIHWPERVDTHKKANAFAGSALSHAALP
complement(3491288..3492793)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage prohead protease; Lambda gpC homolog; EGX88_19415; phage(gi169257232)     0.0                 ShigellaflexneriMRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQQQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSPGGQATGAFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVDAVMGTEAAVFEGQSGIEAELADELINASDAISVMAATLNTHDTGGTMPQLTATEAAAQENQRVMGILTCQEAKGREQLATMLAGQQGMSVEQARAILAVAAPQQSGVSAQSEADRIMACEEAKGREQLAATLAAMPEMTVEKARPILAASPQANAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLAAASGRAEPVSASTTAMFEHFMANHSPAAVQGGVPQTSADGDADVKMLMAMP
complement(3492783..3494376)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage portal protein; Lambda gpB homolog; EGX88_19420; phage(gi169257233)     0.0                 ShigellaflexneriMKRTPVLIDVNGVPLRESLSYNGGGAGFGGQMAEWLPPAQSADAALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRLNWRWLGMRETTAKSFVGEVEAAWSEYAEGMFGEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWDTETTQLFRTRFKAVSPKRVDTPGHGMGNHFLRAGVEVDRYGRAIAYHICEDDFPFSGAGRWERIPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERMKMLDSLQATQLQSAIVKAMYAATIESELDTEKAFEYIAGAPQGQQDNPLINILEKFTRWYDTNNVTLGGVKIPHLFSWRCAEPADSAGFRQWIFGATGAAAVYCSRSWRFLRTVVPLLEGQLLKCPCLRQVVALFYGAAKIYCGPAGHADVFLLAGRGASSGDYSSATGAFFLPGAFSLVTGRVDWLRKNGHRAQGGPGIGDAHGRTEHVERTGTDGRRLSGHFPPAGQGIRRARKSRTLTSGVDSPGVSAADSGESQAGRGDNITDVA
complement(3494373..3494576)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; EGX88_19425; phage(gi169257234)     5.58e-18            ShigellaflexneriMVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLNELNRAINDAESVLGTTRRRRPLGVRL
complement(3494560..3496488)       PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; large terminase subunit; Lambda gpA homolog; EGX88_19430; phage(gi169257235)     0.0                 ShigellaflexneriMNISEQQLSNMMVAVTIALQPLVRVLPVTAVEWADQNYYLPKESSYGEGEWKTLPFQVAIMNCMGNDEIRTVNLIKSARVGYTKMVLGVIGYFIEHKSRNTLLFQPTDSAAEDFMKSHVEATIRDVPCLKKLSPWLGRKHRDNTLTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKIKGSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDDATSFGLKWEKGKPETVYYLCEHNGCVIRQSELDQTGGRWICDNTGMWTRDGLTFFSASGNEIPPPRSITFHIWTAYSPFTTWVQIVCDWLDALKDPNGVKTFVNTTLGETWEEAVGEKLDHQVLMDKVVPYTATVPVRVVYLTAGIDSQRNRFEMYVWGWAPGEEAFLVDKIIIMGRPDEEETLLRVDAAINKKYRHADGTEMTISRVCWDIGGIDGEIVYQRSKKHGVFRVLPVKGASVYGKPVITMPKTRNQRGVYLCEVGTDTAKEILYARMKADPTPVNEATSYAIRFPDNPEIFSQTEAQQLVAEELVEKWEKGKMRLLWDNKKRRNEALDCLVYAYAALRVSVQRWQLDLAVLAASRKDATAQPTLEELAAKLSGGVNGYSR
complement(3496460..3496744)       PHAGE_Entero_mEp237_NC_019704: terminase small subunit nu1; EGX88_19435; phage(gi435439266)     1.71e-22            ShigellaflexneriMTAEQAVAQQLKNQVSKGNLIDTGFCIFALSKLAMALSSTLDSIPLSMQRQFPDLTPRHIDHLKILIAKGANQCARAGDKLPDLLDEYIRTTTE
complement(3496811..3497850)       IS3 family transposase; EGX88_19440                                                  N/A                 ShigellaflexneriTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNRRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRVKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
3497906..3499115                   PHAGE_Stx2_c_1717_NC_011357: putative transposase; EGX88_19445; phage(gi209447180)     7.08e-59            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTHVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSGSLA
3499167..3500173                   IS3 family transposase; EGX88_19450                                                  N/A                 ShigellaflexneriGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKSTAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
complement(3500217..3500396)       Rha family transcriptional regulator; EGX88_19455                                    N/A                 ShigellaflexneriMNKSLTVLPSGEYPTMSSLEMVDYINADRKSKAEAEGLAFPCKKYRKLEHRSFMKKVPRV
complement(3500640..3500846)       PHAGE_Salmon_SPN3UB_NC_019545: Rz1; EGX88_19460; phage(gi423262446)                  1.68e-43            ShigellaflexneriMRKLKMMLFGASLIMVVGCSSKENALCHPQPKPPAPPAWAMMPPSNSLQLLDETFSVSGTESSATRQH
complement(3501063..3501596)       PHAGE_Entero_mEp460_NC_019716: endolysin; EGX88_19465; phage(gi428782372)            4.60e-127           ShigellaflexneriMSAKIKYGLSAAVLALIAAGASAPQILDQFLNEKEGNHTTAYRDGSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQKAGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDVGRDCRIRSNNCYGQVIRRDQESALACWGIDQ
complement(3501662..3502276)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; EGX88_19470; phage(gi116221997)     9.00e-40            ShigellaflexneriMNQRFNHLENEITELNKKLSALVSSEDENKRRDEHYAAIYDYCHKVAHETFMKFLQEKFLPAALSEKEAAYLRPEYVITVNGAGEEEHKSDFIASAPDKDQEPHRPFRVSCEEGEFVVYENGKPVRASHHHCLKIINLAIRCLKDENTRVMKRIGRCMGYLQVAAEIEALASGADMDAAVREALLRDFNTPPLRKSLMTGSSRG
complement(3502295..3502510)       PHAGE_Entero_VT2phi_272_NC_028656: holin; EGX88_19475; phage(gi966197762)            4.19e-35            ShigellaflexneriMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVRPSQWAAIGVLGSLLLGLLTYLTNLYFKIREDKRKAARGE
complement(3502803..3502877)       tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
complement(3502881..3502956)       tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
complement(3502959..3503035)       tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
complement(3503037..3503113)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
complement(3503313..3503693)       PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; EGX88_19500; phage(gi985761278)     1.41e-79            ShigellaflexneriMRDIQQVLERWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMVICGCMARLNRNNNDLHDLLVDYYVFGMTFMTLARKHGCSDGYIGKKLQKAEGVVEGMLMMLGVRLEMDKYIEHP
complement(3503686..3503886)       PHAGE_Shigel_Stx_NC_029120: NinH; EGX88_19505; phage(gi985761277)                    1.41e-29            ShigellaflexneriMSVKIQTIPELLIQTRGNMTEVSRMLNCNRATVRKYAEDKEGKGHAIVDGVLIVHRGWDRGKDSDA
complement(3503981..3504223)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; EGX88_19510; phage(gi18249884)     4.45e-48            ShigellaflexneriMTFTPEQLRKHAQEMLRHAEQLEKTGITKDAIRKDMVPALRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEALR
complement(3504235..3505626)       PHAGE_Entero_phiP27_NC_003356: putative helicase; EGX88_19515; phage(gi18249883)     0.0                 ShigellaflexneriMTTPVWRNDDLEGAVIGAFFLRGADPEVMDILATLPADVFSVRAYQDIYTGICRQARVSGVIDPVLLCNEMPELAPVITDTGRKTWVKSSLEHYVAALRRNAALRDAEKTLNEALQKLRDAHTCEAAEDALKDAQNMMVTLSTGKGVIQPVHIDDVLPEVVERVECRNQGLEKSRTLMTGIDELDAKTGGMEPGDLVFIAARPSMGKTELALDIIDKVTEQGHGVLLFTMEMANIQIGERMVSAAGGMPVSRLKSVAHFEDEDWTRFSQGVGRMTGRNIWMVDQANLAIDEICATTKHHLIKYPETALVVVDYLGLIKTRTTGRHDLAVGEISKGLKGLAKSGGFPLIALSQLSRGVESRPNKRPMNSDLKNSGEIEADADIILMLYRDEVYNPDTQARGIAEINITKQRNGSLGTIYRRFYNGHFLPVDQESARVLSTPMKPGNPRRYSNKRTDSSKMERFF
complement(3505623..3506501)       PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; EGX88_19520; phage(gi18249882)     2.89e-179           ShigellaflexneriMMTFNLREQQKRLQARMDELRAEIAFAQKGEKPWPYRSCLMREGRGYCEKHGEYHTHILVWSDRNGEDREEISCCPDCLIAEANDLTMELSSIKAEELTDNAGIALRFRDCEFDNYLEVNPGAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHLAVAMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEKTADEVIERYASMDLLIIDEVGVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWAFISPRIADRITDGGRNWLSFNWPSYRSRIRGVAA
complement(3506512..3507420)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; EGX88_19525; phage(gi18249881)     5.09e-89            ShigellaflexneriMRPSDLLLDFGHPVAYYPGLVKYMGSPHAVIFFGQIFYWQDKAHAAEGVHKTREEIQHETGLTFEQQAVARKHLVSRGILVETNKRLEHKMFYRIDCERLNEIINENNQFSRNGETRFRETVKPNFAEEGKPSPRTRETPRRGEGKTNFDLTENTTEITSENTTESKNTIGASADASAPARSSRQEYSPEFEQAWQEYPKRAGGNSKSAAFKAWKARLREGIKPEAMLDGVKRYAAWVRATGNTGTQFVKQAATFFGPDRHFEDFWQQPAAPRGGRQRQVDVLAGLGAMSDKFGKSSDKLTF
complement(3507407..3507640)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; EGX88_19530; phage(gi100121)     4.69e-20            ShigellaflexneriMIRHIVNFLYHRYNHCPRVGQWFTTSNGYVLRVCLVSTESQKVVCQVQGRTHTLSYPLVAFQPGKMFKRLGGGYASV
complement(3507637..3508653)       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; EGX88_19535; phage(gi100120)     3.35e-127           ShigellaflexneriVRFSEIAAVYLHAFNKMLVSGTHTQWKLIDLQSDLFTVVFDSVVHTAKHNKIVISAQYIDSAISGRYTVSAPYKAGAGIGVLKFNIEHNRAHAVFSCHEHCYAQIMVGRAGTSQDAPGSMLTGYANPVRLTTSVIGVPCGEFFEFNIGAVTMTTLPTLSQPEIAIVDGAVTSSLAVANFFSKRHDDVLKKIRILDCSPEFCARNFAETSILVRQPNGGTRKLPCYQITRGGFAFLAMGFTGKRAARFKEAYINAFNQMERSLSGAGAADMSSVAQNARGVYLHLREIHQIWTSQLYPMLKAVESPLAGKLYDRVGDAVFGAALVDSRLNGSDKEVRP
3508585..3508848                   PHAGE_Shigel_Stx_NC_029120: hypothetical protein; EGX88_19540; phage(gi985761269)     1.77e-57            ShigellaflexneriMRARYQHLVERMKVYGSNLGEPHTSAFGDGLFELRIKGNDGIARVFYCTLTGKRIIMLHSFVKKAQKTPPAERKKAETRMKEVKHDW
3508838..3509146                   PHAGE_Shigel_Stx_NC_029120: helix-turn-helix family protein; EGX88_19545; phage(gi985761268)     6.01e-67            ShigellaflexneriMTGKRTLPTMTHDEMAAKWMEDPAFKAEYDAIADEFALLDEMLAARKEAGLTQAEVAERMGTKATAITRMESNLASGISGPSFATLKKFARATGKKLQIRFV
complement(3509188..3509364)       PHAGE_Entero_HK629_NC_019711: NinE protein; EGX88_19550; phage(gi428782065)          5.59e-35            ShigellaflexneriMRRHRRSFTDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTTHLWDIRWLRHRARK
complement(3509361..3509771)       PHAGE_Entero_mEpX1_NC_019709: NinB recombinase; EGX88_19555; phage(gi428781922)      4.02e-96            ShigellaflexneriMKQTIFLRTKQQQQAAINAILSTPLDKDKPVTIRITDYKRNLDQNAKFHAMLADIARQVQWCGKWLKPEQWKVLLISGHAVATKQEADVLPGLEGECVNIRESSAQMSVKRMASLIEYTTAWAIGQGVRFTDRRYE
complement(3509768..3510046)       PHAGE_Entero_933W_NC_000924: hypothetical protein; EGX88_19560; phage(gi9632497)     5.48e-59            ShigellaflexneriMNDSYRQFENWWSKDKSQFTGDDELKEFAWVIWQASRAAIELDIDWPESNDDFWKDGEEGAYAMGHEDGKDKTVIAVMKAIRAAGIKEKNFR
complement(3510121..3510315)       PHAGE_Entero_Min27_NC_010237: putative DNA primase; EGX88_19565; phage(gi170783640)     9.81e-42            ShigellaflexneriSPASVLMLEKQRNGEGWEGGVPLFLDEQSHQFLQLESGSPYSYIANMPKSEYDEAWRQENVTEY
3510385..3511553                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_19570; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(3511488..3511667)       PHAGE_Entero_Sf101_NC_027398: replication protein O; EGX88_19575; phage(gi849122306)     8.53e-07            ShigellaflexneriMPFYFRKECPLNSGYLSQRWNDEKPETIQPQSRPSLKWSTKTGHRVRVFPVSIFRFVWG
3511683..3512812                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_19580; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLFLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(3512856..3512945)       PHAGE_Shigel_Ss_VASD_NC_028685: holin lysis protein S; EGX88_19585; phage(gi966200466)     9.96e-09            ShigellaflexneriMYQMEKISTGIAYGTSAGSAGYWFLQWLDQ
complement(3513103..3513292)       hypothetical protein; EGX88_19590                                                    N/A                 ShigellaflexneriIMLLFRGEELAFSSAFSPVTIRKIMKCPLRGGGPKKGPASKNIGDEQLSLLRLLAGKVPHELA
complement(3513626..3513700)       tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
complement(3513704..3513778)       tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGGGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGCACCA
complement(3513781..3513857)       tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
complement(3513859..3513935)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
complement(3514125..3514547)       DUF1133 family protein; EGX88_19615                                                  N/A                 ShigellaflexneriMFNLMLTSKKLTKTAINEALRRMKKAGLNKSELEAFLRDMINGKQKSWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKCKMAELLNDAHPKWSLRTCERRIEHWLKVAEFILYKPMVMAFGIEKKVIAF
complement(3514576..3515744)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_19620; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(3515915..3516580)       hypothetical protein; EGX88_19625                                                    N/A                 ShigellaflexneriMTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDYTIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWDYNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE
complement(3516749..3517162)       PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; EGX88_19630; phage(gi100050)     6.96e-12            ShigellaflexneriMKLAIRLQLPLAFASKERSMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
complement(3517163..3517585)       PHAGE_Shigel_Stx_NC_029120: LygF; EGX88_19635; phage(gi985761265)                    4.79e-67            ShigellaflexneriMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDGEIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
complement(3517600..3518346)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage DNA replication protein; DnaC homolog; EGX88_19640; phage(gi169257254)     6.78e-99            ShigellaflexneriMKNIATGGVLERIRRLTPQHVTAPFRTVAEWREWQLAEGQKRSEEINRLNRQLRVEKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFAFSGKPDTGNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEVMKTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRVVK
complement(3518353..3519136)       PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; EGX88_19645; phage(gi418487646)     9.70e-53            ShigellaflexneriMASNWIKLEVITPDKPEIFRLAEILNIDPDAALGKVIRFWAWADQQMIDGNADCNARGVTKSAIDRITFMSGFADALIQVGWLVENDGGLSLPNFERHNGKSSKKRAVTNERVTKIRELKRKGNAASVTQTDQKALPVEEEEEEEDLNTDLPLNPPRQKRASKKFEPEAIELPDWLPETLWHEWVRFRQALRKPIRTEQGDTGTGKIPSAGFYTAGDSTQHRQIPGPVRAERCSADVAPTGHRLVAGQCDPARLQGVA
complement(3519214..3519636)       PHAGE_Entero_mEp237_NC_019704: CII protein; EGX88_19650; phage(gi435439306)          8.85e-10            ShigellaflexneriMKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELSLVPGKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSPGDSVVVH
complement(3519620..3519847)       PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; EGX88_19655; phage(gi422936651)     8.52e-13            ShigellaflexneriMLKIDAIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQEASGGELQYDPKVYDEYRKAKRPGKVIHENQA
3519924..3520331                   PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; EGX88_19660; phage(gi401817574)     4.38e-39            ShigellaflexneriMKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPESEQKALLSEMRARVENFNKLFEELLKARKRSANK
3520534..3520689                   PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; EGX88_19665; phage(gi472340166)     2.43e-11            ShigellaflexneriMNTIDLGNNESPVYGVFPNQDGTFTAITYTKSKTFKTEAGARRWLGRHSGE
3520691..3520894                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; EGX88_19670; phage(gi401817573)     1.44e-16            ShigellaflexneriMNETELKHVIALLLEDAKRLQQLEPNAGTGARIWLAKEALESGDYDSEEAFYKAEGRAGYSPGLGGV
complement(3520871..3521161)       hypothetical protein; EGX88_19675                                                    N/A                 ShigellaflexneriMITDVWKYRGKSTEPEDYEGLHKYMLSLGFRRTIPHGDGSYNQLPDGTYVSEKGGDIYQIRSQISDYADRLSGYRASVFVCEFSQCAWYLYPAKTR
complement(3521136..3522409)       PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; EGX88_19680; phage(gi24114950)     0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASERAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
3522912..3523760                   PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; EGX88_19685; phage(gi428782357)     3.42e-68            ShigellaflexneriMLNVAIENQNGWNYSAPAPHKTGAGIATPTMTTAHNRAQAVFLCVKHSHIQIMVGRAGQPQGWPVSVVTGCSNPVRLTTHEIATSGGESFKLTIEAAIMATILTLSHPDATIENGRAVTTSVAVAEFFRKMHKNVIQKIETLECSPEFNRLNFKPVTYTDAKGEKRPMYQITKNGFVFLVMGFTGKKAAAFKEAYIAEFDRMEAELRQNNTPPADKMIPGDGRTLVVHFDKFGNVEFTETVPDGALVCTLETFRFYLEKQGWTLVNRGAIKNMTVEQLLSLK
3523777..3524058                   PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; EGX88_19690; phage(gi169257260)     2.29e-07            ShigellaflexneriMNPMLDYCFTSAPQQTITHTGIKNLLWIIKKNLQQKGDPDLIPCAYGLCDRQVSPDKAYTAELIYMHGTMMRKKKRKYCSEICAEKDQMAHEL
3524274..3525403                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_19695; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKFNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQIAA
complement(3525428..3525877)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage exodeoxyribonuclease VIII-like protein; EGX88_19700; phage(gi169257262)     1.17e-15            ShigellaflexneriPEGEIDFTWSERYQLSKDSMTWELKPGAAPDDVHHQDNAQETKELAGGQEENAQADAHEDCQDCEVSVATLRFTQRLLHIFTYAAGDRKYLHHATREQRKHITALEMDQENSYVQNLLLAIRGMAEPTTLDNAALLRLTDAIKAEVYWQ
3525952..3527120                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_19705; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(3527130..3527324)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage exodeoxyribonuclease VIII-like protein; EGX88_19710; phage(gi169257262)     9.28e-26            ShigellaflexneriMSTKPLFLLRKAKKSSGEPDVVLWASDDFESTSTTLDYLLVKSGKKLSNYFKAVATNFPVVNDLP
complement(3527424..3527656)       racC domain protein; EGX88_19715                                                     N/A                 ShigellaflexneriMVVSAIASTPHIGYVIKTENKETPFTVVDIDGLSGNFKTLVEGATKMCLVYIGNNLPAEKKPNFWQILQNKVKSGA
complement(3527667..3528823)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_19720; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVVPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA
3528889..3529506                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; EGX88_19725; phage(gi730985066)     9.88e-44            ShigellaflexneriMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQRIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPNSLGRLYPVVMAAKSDIVRDVMTWGDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
3528954..3528966                   attR                                                                                 N/A                 AAAAATCATTAAT
3529506..3529685                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; EGX88_19730; phage(gi849255281)     6.52e-08            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(3529686..3530639)       invasion protein; EGX88_19735                                                        N/A                 ShigellaflexneriMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSDDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(3531032..3531511)       invasion protein; EGX88_19740                                                        N/A                 ShigellaflexneriMREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLK
3532002..3532133                   PHAGE_Entero_P88_NC_026014: DNA invertase; EGX88_19745; phage(gi744692743)           2.75e-12            ShigellaflexneriMLIGYVRVSTNDQNTDLQRNAFICAGSELIVARMGSWPEVVMA

#### region 12 ####
3528119..3528198                   attL                                                                                 N/A                 GTGTGGCAACATACGTCAGGTCCGCCACCCAGACCTGATTTGGTGCTGTAGGAGCGAACGTCTGGTTCAGCAGATTTGGC
complement(3541049..3541930)       PHAGE_Entero_HK106_NC_019768: integrase; EGX88_19780; phage(gi428783305)             0.0                 ShigellaflexneriMTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
complement(3542031..3543160)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_19785; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGFRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA
3543225..3543353                   PHAGE_Shigel_Ss_VASD_NC_028685: holin lysis protein S; EGX88_19790; phage(gi966200466)     8.84e-22            ShigellaflexneriQVSPSQWAAIGVLGSLLLGLLTYLTNLYFKIREDKRKAARGE
3543353..3543646                   PHAGE_Salmon_vB_SemP_Emek_NC_018275: lysin; EGX88_19795; phage(gi399498856)          1.08e-58            ShigellaflexneriMSPSLRKAVAVAIGGGAVAIASVLITGPGGNDGLEGVSYIPYKDIIGVWTVCHGHTGKDIMPGKTYTEAECKALLNKDLVTVARQINPYIKVDIPETT
3543729..3544403                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; EGX88_19800; phage(gi209447151)     2.25e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
3544400..3544750                   PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_19805; phage(gi209447152)            1.33e-34            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFTKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
3544747..3545414                   PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_19810; phage(gi209447153)            9.47e-07            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEIFWKMHRQSQIHLTPVPRQKTRSPVSLNPRDENLHENRCRQNFPGRHIAFCLLKPVARPVEVFKKWGKQSQSNWISLIPPLKLSKPYVPNWPVAGVMSSFRHHFLLNRSNAVMPVQGYLHGSWSANIWNISLYIASQKYTRDRAWSAVICT
complement(3545373..3545462)       GGDEF domain-containing protein; EGX88_19815                                         N/A                 ShigellaflexneriMPFYFRKECPLNSGYLSITAQLHALSRVYF
3545478..3546634                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_19820; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLHKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA
3546676..3547083                   PHAGE_Stx2_c_1717_NC_011357: transposase; EGX88_19825; phage(gi209447153)            3.06e-54            ShigellaflexneriHTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDKDVRRPTEM
3547154..3548322                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_19830; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3548328..3548576                   PHAGE_Entero_mEp460_NC_019716: Rz lysis protein; EGX88_19835; phage(gi428782373)     5.42e-48            ShigellaflexneriSKAENDALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDGIISDQTALRMLQEYIRIQCLGG
complement(3548665..3549174)       DedA family protein; EGX88_19840                                                     N/A                 ShigellaflexneriMEWINALMNYFVLHPYRLWGLLFIIAFTKSTLLISAILPPASIMMATVITVSKTTLSPWEAGITVMSGAWCGTIVNYHLGIIIGHIPQLACIISSRSNTIERVRLQLQNNSVSILFTSRFIAVLRYIAPLVAGMLQLHPVKVYTVSLISAASWSALYVGSFSFVLPFFS
3549372..3550067                   PHAGE_Escher_P13374_NC_018846: phage terminase small subunit; EGX88_19845; phage(gi410491651)     8.56e-18            ShigellaflexneriMAKPDWEAIESAYRAGVLSLRDIGEKYGVTEGAIRKRAKKLDWARSGGTQVCKNGTQKRKVRTSRKPAITGLTQKSTQLKTESTPDTKPIRGMRTDPPTNPFQPGNQQALKHGGYARRLLLKDEVIEDAKALTLEDELFRLRANNLVAAENIGRWLVSLEDANGDQERKMLIENISAAEKAMMRNTVRIESIVGTLATVGKIFADTAYRKAATDKVSLEADRLRRDAGIDD
complement(3550073..3551241)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_19850; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3551315..3552022                   PHAGE_Edward_GF_2_NC_026611: putative terminase large subunit; EGX88_19855; phage(gi764162249)     7.65e-118           ShigellaflexneriMAMESVTSMTSTLTSKPTLNPALRSFWTMRARNKVLYGGRSSSKSWDAAGIAIFLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGIDMLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIRLAP
3552053..3553325                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; EGX88_19860; phage(gi24114950)     0.0                 ShigellaflexneriMIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
3553337..3554070                   PHAGE_Edward_GF_2_NC_026611: putative terminase large subunit; EGX88_19865; phage(gi764162249)     1.02e-57            ShigellaflexneriAIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWWLTVSEIRLTPLTTENSILWMSSAILVVRCLKSNWNQHLIVISTVTDVWSKVKKTSQNARYRHQTLLMHSLWPSRQSIHRWISGNSWGDRPGA
3554070..3555536                   PHAGE_Salmon_SEN34_NC_028699: putative portal protein; EGX88_19870; phage(gi966201420)     0.0                 ShigellaflexneriMARNKQALRRTVQATADGYENFIARVGMQTPNQHSASTYRANFTSRNRMLVEWSYRSSWIIGEAVDAIPDDMTRKGIRITSEIDAKDRGILESQLDELQIWDALNDVLKWSRLYGGAVGFIMIEGQAPMTPLRPETIGKGKFKGILPLDRWMVDPALTRRIKDMGPDLGKPEFYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVERIWDRLTAFDSATVGAAQLVYKAHLRTYSVEKLRELIALGGPAYEALLKNIDLIRQFQSNEGMTLMDSRDKFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGFSTGDADLANYYDRISSLQERRLRLPVRRILDIMHRSELGKPLPDDFTFEFNPLWQMSDVDRSTVALNTTNAISTALGDGLMTLKAAMTDLRENSDVTGIGASITNEDIENAEDEAPPGIGEPDDEPQEPSGGNPVSNQPTQDSEGGRRHRKWSLRWFK
3555427..3556170                   PHAGE_Salmon_SEN34_NC_028699: putative head morphogenesis protein; EGX88_19875; phage(gi966201421)     1.80e-119           ShigellaflexneriMTNRRSRQAEIRYRTSLRRIARAVGDIVNGRYDGSNDSITEIIAALERYSEIITPWATKVAENFTADLTRQNEKVWRQHSKNISRELRNLVESAPVGQVMQSIIAEQVKYIKSLPLEAADRVYDIQNKAIEAVVTGGRAEQFAKEIASTGDVAKSRADLIARTELGRATGALDMARAIAIGSDGYIWRTADDGDVRDSHDHMKGKFVRWDSPPTLDGMTGHAGELPNCRCYKEIVFVRVPFAMKRAA
3556174..3557394                   PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_19880; phage(gi966201422)     0.0                 ShigellaflexneriMKYFFETRLGETRYRLADGSLLCKDVPIGRTGKQLYGADDLPKLKPDKFVEIVVTRSPEQVFHPATLASFEGMSITILHPEDENGNVRLVNPENWKVLAVGHLQNVRRGTGEQSDLMLADLIVKDESAIQLIEDGLREVSCGYDAEYEQTEPCKAEQVDITGNHVALVPKGRAGNRCAIGDRDTMANQKKNWWNRMRAAIKTGDADTMNELVESAPASVTGDEGDLPQGVNLNINLSPQQPLPDKAPEMGGDPTGDSDDDLKTLLKALLAKLERNATGDNDNKPDDNPTGDGEDDEEETTITGDSAWRAEVIVPGIDLSRKMKPTAFKREVLASADKTLVRQIVGDADIRKLPKQSVDMAFNAVSEVAKGRNTRATTGDAQRLNMGMTSIASLNKQNAEFWANRKG
3557398..3557754                   PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_19885; phage(gi966201423)     3.94e-65            ShigellaflexneriMNNVFLYRMPVGIAGAVSRPQDLTVEPVVLKSDNAFAAYGLAGKYDDDGFFVPLADGDTADKVKGIYVRPYPTTSQPDMVRQVGTGKNFPGDAMKRGYVTVNLGSDFDASTIKKGDLH
3557899..3558840                   PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_19890; phage(gi966201424)     0.0                 ShigellaflexneriMITFDQATVDSSGAFLIGELERLDQTLNLPLVGYTWSRDIQLREDASIADDISSWTNTSFAAAGTGANPNGKNWVGKDSTAIAGVNVDIGKSGNPLNLWGMELGWTVIELQAAQQVGRPIDTQKYDGMQLKWQMDNDEQVYVGDSALNLKGLVTLDGVPVNNAAKTWATSTPDEIRASINQVLSDAWAASGYSVVPRDLLIPPEQFALLSSIIVSSAGNQSLLTNLQTNTISYHQNGVPLNIRAVKWLKGRGVGNKDRMVAYTNDKKYVRYPLVPLQSVPVQYRGLYQIVTYYGKLGAVEPVYKETISYVDGI
3558882..3559127                   PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; EGX88_19895; phage(gi966201425)     7.28e-17            ShigellaflexneriMAKNDAVIHVHTPFVLTLPDGSRREFVKGRHVVEEDVATHWFTRAHAEVSVGKATDARNEVKNAKELRCTGNSGHYHLFFF
complement(3559124..3560280)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_19900; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
3559576..3559655                   attR                                                                                 N/A                 GTGTGGCAACATACGTCAGGTCCGCCACCCAGACCTGATTTGGTGCTGTAGGAGCGAACGTCTGGTTCAGCAGATTTGGC
complement(3560345..3561976)       PHAGE_Entero_SfMu_NC_027382: transposase; EGX88_19905; phage(gi849255233)            0.0                 ShigellaflexneriMREWISAIECMGLSGLPGSLMGVHKRAQREGWLKRRREGIRGVAYEYHISSLPNIARAEVLLQQGKFKTSQGCFEIARPTLEAHDYDREALWSKWDKASDSQRSLAEKWLPSIQATDEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDEAMVVACREGEHALMHLIPAQQRTVEHLDAMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYSIPEDFHITIDNTRGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTSVVAGKGWGQAKPVERAFGVGGLEEYVDKHPALAGAYTGPNPQAKPDNYGDHAVDAELFLKTFAEGVAMFNARTGRETEMCGGKLSFDDVFEREYARTIVRKPTEEQKRMLLLPAEAVNVSRKGEFTLKVGGSLKGAKNVYYNMALMNAGVKKVVVRFDPQQLHSTVY
complement(3561951..3562196)       PHAGE_Entero_Mu_NC_000929: DNA binding protein ner; EGX88_19910; phage(gi9633495)     5.32e-24            ShigellaflexneriMRKMSNDWHRADVIAALKKTGTPLAKLSRRSGYSTGTLANALVRPWPKGERIIADALNMKPEEIWPSRYLRDHNERVDISN
3562359..3562868                   PHAGE_Pseudo_MP22_NC_009818: transposase A; EGX88_19915; phage(gi157834977)          7.00e-06            ShigellaflexneriMKSANEINQWMTPKQITELDGMPGTIQGVHKRAKKEGWPKRSQEGRRGPGVEYIPAIPAMQKIAIEEMNADTLKMFSLLINKLGENEVREIELNMAKYGLSGLMQERPSISVDTLLATLGIDRQTLQTALALHKLPPETRQEILSMYGVHKQEEPVAPLLEPQDAKKAV

#### region 13 ####
complement(3893554..3894669)       PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; EGX88_21600; phage(gi100150)     7.46e-25            ShigellaflexneriMFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMILCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA
3894820..3896029                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; EGX88_21605; phage(gi157166066)     6.33e-71            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLRQHMAGLRLCGVHHCVCRIHRGVAGLIVHGNDIRAGCTGAGVMGPSTVRHGPSQRFSVCIAGLHTAAGSRITGINRKYRRLVQRDGGEHQWSLQSGGNTPELEKPCRSGTGHTHVGGLVQSTIAGKAGPHPSGRSRKSLLCFHRKRSVSLA
3895995..3897211                   PROPHAGE_Escher_CFT073: transposase insF; EGX88_21610; phage(gi26249410)             0.0                 ShigellaflexneriMLPSETMICQPEFTDKTLSRKPGAVQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
3897338..3897961                   PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; EGX88_21615; phage(gi849122277)     1.21e-102           ShigellaflexneriMVLNNPYFEANAGGADLAIDNTGTRPVTVVINGGNFHRVSSARYTHTNIQVTSSGGGKVTVILNGTTFQSAGDYQPSAERPYWITGANCEVVDIGCVFTETTSKVTSASALSVTRSGKINANGSIDVATGVSSVNVVSTGVYDVSFSHPLAAVASGYIVQITPISAPDSVSCDVTYIGVDTFRVTLRNTLSGAGISSSFAFSITRLI
complement(3898015..3899181)       PHAGE_Entero_Sf101_NC_027398: O-acyltransferase B; EGX88_21620; phage(gi849122278)     0.0                 ShigellaflexneriMIEINSLLLITSVILMSLLAVGLFDKISPINLVEHGRNNQIDGMRGFLAIFVLIHHAAIWNGYLSSGVWEAPSSNLLANLGQVGVSFFFMITGYLFFSKIISGDQDWTRLYVSRLLRLTPMFIVSLCLIFIIVGFKSGWRMQVSTEELFVSIMKWLPFTALGMPNINDVKDSFTINAAVTWTLVYEWFFYFSLPVISALIKRKVSIYMVMISAISLFVFILFFSKIHIASFLFGLLAFLLNKSKIVNGIAKAKVTPIIITAIMVFEMTYFKTTYAPLPLILCGITFIIIASGCDLYGILRLNITRKLGETTYSVYLLHGIFLYCLMTWIIPNNYTENTFIILVSTTAFLITFTSCLTFKLIETPFIKLTKQTTTLVKELIPTLTNNNQ
complement(3899536..3900000)       PHAGE_Shigel_SfII_NC_021857: integrase; EGX88_21625; phage(gi526244664)              8.72e-105           ShigellaflexneriMPVHLKESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDLILNPSVPNLSQSRNKEGTNDV
complement(3900027..3900152)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_21630; phage(gi26249410)             1.79e-21            ShigellaflexneriDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
3900163..3900175                   attL                                                                                 N/A                 CCAACTTACTGAT
complement(3900168..3900865)       PHAGE_Entero_P1_NC_005856: InsA; EGX88_21635; phage(gi46401643)                      6.94e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMADRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(3900894..3901960)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_21640; phage(gi26249410)             9.49e-177           ShigellaflexneriMSRKTRRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAGNAANLLI
complement(3902026..3902742)       PHAGE_Shigel_SfIV_NC_022749: integrase; EGX88_21645; phage(gi557307554)              4.06e-174           ShigellaflexneriMSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGIQLRDITESKIYSAMQKMTNRRHEENWKLRAESCRKKGKPVPEYTPKPASVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPE
complement(3902821..3903989)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; EGX88_21650; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3904065..3905216                   PHAGE_Entero_IME10_NC_019501: coat protein; EGX88_21655; phage(gi422934283)          0.0                 ShigellaflexneriMPVEQEAPTQTGWDLTGNATGILELSVKCNMGDPDNDFFELRADDLRDERSYRRRIQASAKKLANNIESAIAKQATEMGSLVVHDTRAIGPSTGLPGWDFVSDAERLMFSRELNRDMGISYFLNPDDYRKAGRNLVDGDIFGRVPEEAYRNGTIQRQIAGFDEILRSPKLPAVTKSTATGVTVSGAQKFKPQAYTLDTDGNKENVDNRVATVTVSSTTGFKRGDKISFIGVKFLSQMAKNVLTDDATFSITRVIDGTHIEITPKPIALDDASLTKEEKAYANVNTSLADTTPVNVLNVATTTANVFWADDSIRLLSQPIPVTHELFAGMKTSSFSIPGIGVNGIFATQGDINTLSGKCRIAVWYSACAVRPEAIGVGLPNQTA
3905261..3905485                   PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; EGX88_21660; phage(gi389060541)     4.54e-06            ShigellaflexneriMTHMIFRHGDMKKWKGVGYDFEIVKAEELQEYLDAGWFSHPDDLLKDVAEPEEKQCKKPGRKPKAAADEPDNEG
3905463..3905963                   PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; EGX88_21665; phage(gi422934284)     2.82e-122           ShigellaflexneriMNLTTKGDLVLAALRKLGVASNATLTDVEPQSMEDGVNDLEMMMAEWLGGDASPGINVGYIFADADVAPDPGDEHGLSNNAINAVIFNLACRIAPDYALEASAKLITTARYGKERLVKLSAMDRAKAAKCKSGYPNRMPVGSGNQLAKWNGWNYFHRKEPCDNGSE
3905963..3907381                   PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; EGX88_21670; phage(gi422934285)     0.0                 ShigellaflexneriMPIQQLPLMKGVGKDFRNADYIDYLPVNMLATPKEILNSSGYLRSFPGIAKRSDVNGVSRGVEYNMAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPTDSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISNPATGAPSVYIIDSGQVSPIASASIEKILRSYTADELADGVMESLRFDAHELLIIHLPRHVLVYDASSSANGPQWCVLKTGLYDDVYRAIDFVYEGNQITCGDKLESVTGKLQFDISSQYDKQQEHLLFTPLFKADNARVFDLEVESSTGVAQYADRLFLSATTDCINYGREQMIEQNEPFVYDKRVLWKRVGRIRKNVGFKLRVITKSPVTLSGAQIRIE
3907381..3908178                   PHAGE_Shigel_Sf6_NC_005344: gene 9 protein; EGX88_21675; phage(gi41057287)           0.0                 ShigellaflexneriMADSNLNVPVIIQATRLDTSVLPRNIFSQSYLLYVIAQGTDVGNVANKANEAGQGAYDAQVRNDEQDVILADHEQRISAAEATLVNHEERIRQAESTLQDHETRIAQNESDISSLDTRVQSLESQVSDHETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGSLAPFFDTVNNKMVVFNENKTLLFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNAATTTDNILLATFFSVDKDGFLATTIKIIAEQ
3908178..3908633                   PHAGE_Entero_IME10_NC_019501: head assembly protein; EGX88_21680; phage(gi422934287)     2.54e-110           ShigellaflexneriMITFKPTRNIDLIEAVGNHPDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYQEIQPLTLDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
3908636..3909244                   PHAGE_Entero_IME10_NC_019501: DNA transfer protein; EGX88_21685; phage(gi422934288)     1.84e-117           ShigellaflexneriMLYAFKLGRKLCGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAADLQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSKQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALASLLGTSTPWGAGIGAGIGLLGSLF
3909254..3910585                   PHAGE_Entero_IME10_NC_019501: gp20; EGX88_21690; phage(gi422934289)                  0.0                 ShigellaflexneriMATWQGTNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEEQRNSIGTLAAGARLASSSPEAMQSWLQNNAGELARVGVNPHDVAQMYQQNPRQFGEFVDHLGMNSLGPEKYFDLQDKMQGRQVTMRGQDLDSQTAARNQAITMRGQDIQANLGQQRINLDAETNRINNENKRLDRMLSAETNDLKRQEIQSRIAANNQQLQQKQQALNDGYKDGINTLTTSMFTLNDIVSSPSLKSITGLRGVIPNVPGSQAADTQARLDTFKSQAYLTAVQAMRGMGALSDAEGKKLDQAVGSLQNSQSEESFRRNAGVILNTLNQKRNEAVGKYVQQNGIKRVEAPQASIDYLKQHPELSIDFINRYGYLPSLGQ
3910586..3912316                   PHAGE_Entero_Sf101_NC_027398: transglycosylase; EGX88_21695; phage(gi849122275)      0.0                 ShigellaflexneriMANYRDLLEQAGARYGVPEGLMTALGAKESSYNPAAVSSAGAVGLTQVMPGTWRDMGYTDEQMQNPEYQADAGARYLAKMYQQFGNWRDALQAYHDGPGNVMKAKRGEYTPGPEGRGYVDDRFAQWAGDPVTDSTVEQRATSAKVHPQQDPNNPFAQLEVQSSEQVSASGVQSDPNNPFAQIEQQAASQQPPQPVSSVAPKPVQQQTVNQANNAPTREEPSLMQQAGDWLTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPYAQAGESIGGYLVPGAGVAGNMVIGSLADAANQRGDFAENAAINAGLSIATHGLINGVTRGVRGASNIISGNKTSAQRATTAPTETSPFSGDAAAATNPAVHAAEARVAQGVPMTPATKNPEEVVRTVAAQKRPNLASSLDELDINPQAEVLESAERLNVDSLLPSHFSGNEQYKAVEQAIKSRAGSALQVQENEAIRQLAQGAGEIIDRVSGAKDALGMSDKFIDTVNGRMSALMKRSDQLYRNVEKAMPAGAKIDAPSTRSMLKQVAEDLGGMKNLDPIEKRVEVA
3912442..3913650                   PROPHAGE_Escher_CFT073: transposase IS629; EGX88_21700; phage(gi26250986)            1.90e-160           ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKSQGIRCKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNCAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLSA
3927636..3927648                   attR                                                                                 N/A                 CCAACTTACTGAT

#### region 14 ####
3955367..3956064                   PHAGE_Entero_P1_NC_005856: InsA; EGX88_21935; phage(gi46401643)                      5.78e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSTLSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
3956255..3957358                   glutamate 5-kinase; EGX88_21940                                                      N/A                 ShigellaflexneriMSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRRNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR
3957370..3958623                   gamma-glutamyl-phosphate reductase; EGX88_21945                                      N/A                 ShigellaflexneriMLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESAEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALTQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA
3958738..3958813                   tRNA                                                                                 N/A                 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA
3958817..3958831                   attL                                                                                 N/A                 AAATCAATAAGTTAC
complement(3958828..3959766)       PHAGE_Shigel_SfII_NC_021857: integrase; EGX88_21955; phage(gi526244664)              0.0                 ShigellaflexneriMDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWKLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSKNKEGTNDV
complement(3959840..3960996)       PROPHAGE_Escher_CFT073: transposase insF; EGX88_21960; phage(gi26249410)             0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
3961061..3961573                   PHAGE_Shigel_SfII_NC_021857: hypothetical protein; EGX88_21965; phage(gi526244657)     2.07e-106           ShigellaflexneriLCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKSDGTVKTALENLGLGEAAKRNVGTGANQIPDMSLFASSNTATAAAQKFPSGLILQCGQLNGSPNVSSTYGMRFPMTFSRVLAVTVTLNVTGASGQPTVSATNVQNTGFDITVSPGSGYGSSADAYYIAMGY
3961530..3961985                   PHAGE_Shigel_SfII_NC_021857: tail fiber assembly protein; EGX88_21970; phage(gi526244658)     1.60e-93            ShigellaflexneriMVHLLMRITLQWDINEMSYFYSASTNGFYSTEFHGTNIPDDAVEISESEWKTLINSQSVTKMITCGENGHPVIVDRPSPTPEQLALINNEKKSALIAEATNVIAPLQDAVDLDMATDDETKLLLAWKKYRALLMRVDIKNTEWPKKPESNL
complement(3962219..3962524)       PHAGE_Entero_SfI_NC_027339: glycosyltransferase; EGX88_21975; phage(gi849250308)     3.21e-68            ShigellaflexneriMTVNWLSGGDIQITPVFFNADSGKINFTGVRQQTLASWHSKEAFNSAPERQFIAVSIANEPERCKEMTSCLAGIQEQLGKPDEVLNFEGRVILVFNKKLNL
complement(3962521..3962761)       PHAGE_Entero_SfI_NC_027339: glycosyltransferase; EGX88_21980; phage(gi849250308)     7.13e-50            ShigellaflexneriMRFFMNVTCFALILCCIGTSTKAKILFYLIAFLFSISSIKSYTNNASPLHDQEKIVKSYIDFLKKNNLHYGYGSFWDLSMA
complement(3962788..3963739)       PHAGE_Entero_SfI_NC_027339: glycosyltransferase; EGX88_21985; phage(gi849250308)     0.0                 ShigellaflexneriMSICIKQSALKILLALSALLITWLTTRYFPVEPDVANSPIVWRHILENGISSIHDWKPTVDNWYFTVYPINFLFYMLLGDDGLVALRLSTAVFSIAIVIAAMLTLRKAFGFTPALFSIILLSLIPYFSYTYGFVSHPFSHNSTNAFGFLCLLISVFNIQYKNIFITLLLSLTALFSSVSDPWFTAAFFIPLLISYFLFSVWDKKLFKHTALILFACLISLSNVLQNLLNIPPHQFEIVSLNDMILNAKWCILLIGKSLNLLVVDNNATSYASFVIWFIAIITSAWFVLSDNKKNTYRIYIVLFSLLSIAGIVSSFILA
complement(3963742..3964662)       PHAGE_Shigel_SfII_NC_021857: bactoprenol glucosyltransferase; EGX88_21990; phage(gi526244662)     0.0                 ShigellaflexneriMKISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVIPHLIEKWQAGAEMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGILSWVGGQTDVVEYVRAERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISFLYGAWMIIDTLVFGNPVRGYPSLLVSILFLGGVQLIGIGVLGEYIGRIYLETKSRPKYILKKGRK
complement(3964659..3965021)       PHAGE_Shigel_SfII_NC_021857: putative flipase; EGX88_21995; phage(gi526244663)       7.65e-80            ShigellaflexneriMLKLFVKYTSIGVLNTLIHWVVFGVCIYTAHTSQALANFTGFVVAVSFSFFANARFTFKASTTAMRYMLYVGFMGILSVIVGWAADKCSLPPIVTLITFSAISLVCGFVYSKFIVFRDAK
3965272..3965286                   attR                                                                                 N/A                 AAATCAATAAGTTAC
complement(3965283..3965651)       PHAGE_Entero_HK446_NC_019714: integrase; EGX88_22000; phage(gi428782218)             8.40e-79            ShigellaflexneriVHLRVFVHTKPAYRSDGIKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISRNGTNTAQEENVVYLNAR
complement(3965685..3966781)       IS3 family transposase; EGX88_22005                                                  N/A                 ShigellaflexneriLQNQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNRRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
complement(3966785..3967953)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; EGX88_22010; phage(gi526244689)     5.34e-138           ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3968049..3968336                   hypothetical protein; EGX88_22015                                                    N/A                 ShigellaflexneriMDEEYRKDLQLWFGLTHTSFCVMPRVFMEAMPPEWQEKMAQLLFEYSDTIKTDVCGVHSCFVTAKDGNNRFMRMPEDILNYRHPRREFIESFLKK
complement(3968393..3969621)       PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; EGX88_22020; phage(gi17546153)     4.00e-55            ShigellaflexneriMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERDCVSRSRWTAVIVRHCTGRLPAASTVKQYRMSCWERWNAASATIFRRLQWSSRIMVHATGLMKHASSPGCWDLNRRTRRCGVRRVTEQRASKRSVTTSVSCPNQTGRQQRTLQRRSSIITNGIRIVRWVIARHGNICGSGLVMGVITDVWKYAG
