gi|00000000|ref|CP037891.1|  Salmonella enterica strain FDA00009424 chromosome, complete 4611179, gc%: 52.21%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
2601021..2601033                   attL                                                                                 N/A                 GAAGCGCAAATTA
complement(2615603..2615749)       PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; AP074_12850; phage(gi100036)      5.10e-17            SalmonellaentericaIGGRRPKLTPEQWAQAGCLIRAGVPRQQVAIIYDAGLSTLYRKFPVLG
complement(2616029..2616295)       hypothetical protein; AP074_12855                                                    N/A                 SalmonellaentericaMVLTLYEGLIEHQIYPGLFNTAYYEGNNMFSLIKSRKVLFITTLLLLSSAAQPAFALGCIGDGGSTADCAKVCSLAAGVGPLGFLICF
complement(2616424..2616549)       arsenic transporter; AP074_12860                                                     N/A                 SalmonellaentericaMFANADSELILTPIIIAVLLAPGFSKSTTLAILHFFFRREK
2616812..2616928                   PHAGE_Salmon_SEN34_NC_028699: putative tail assembly chaperone; AP074_12865; phage(gi966201445)     2.53e-06            SalmonellaentericaMWLAYKNEVKLIDITNTPDNVNWPVPPGGRASHDLKST
2617119..2617319                   PHAGE_Phage_Gifsy_1_NC_010392: PagK-like protein; AP074_12870; phage(gi169257211)     6.24e-40            SalmonellaentericaMKHVKSVFLAMVLILPSSLYPALTIAADSQDHKKEETIKPMPKKWCNLWPTDIPFPEDWFKMCRGY
complement(2618237..2619469)       PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage tail fiber protein; Lambda gpN homolog; AP074_12875; phage(gi169257204)     0.0                 SalmonellaentericaMGEVQTKASLDSPALTGTPTAPTPETTAAGIEIATAAFVAAKVAQLVGSAPEALDTLQELADALGNDPNFATTVLNKLAGKQPLDETLTALSGKSADGLIEYVGLRETINHAADALQKSQNGGDIPEKPLFVQNIGALPASGTAVAANRLASRGALPALTGTTRGSDSGLIMGGVYNNGYPTQYGNILCLTGIGDGEILIGWRGVNGAPASAYIRSHRDTADAEWSEWAMFYTSLNPPPDSYPVGVAIAWTSDATPAGYALMQGQLFDKSAYPLLAIAYPSGIIPDMRGWTNKGKPTSGRAVLSQEMDGNKSHSHTARAQDTDLGTKTTSSFDCGTKLTNTMGNHTHQFGGYINSYRGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAET
complement(2619468..2620035)       PHAGE_Salmon_Fels_1_NC_010391: bacteriophage terminase, large subunit; AP074_12880; phage(gi169257185)     1.26e-26            SalmonellaentericaMTGNKYGSAAAVRREVAEYLRPPRRMPVAEGIKQFMFVPRGANTAVPWDDTLASQSFPKQQRPRNVSWFIPENWLAVHNRFFFVGLQAGGADRLPFPRYRWRGRWFFPGIQTYHHLYVCGDDTGREFAWSGNHRCEMAAFFAARSPAHDRHSFSLPGRSPSVVLALSTLRRLVPARDGKHGGVT
complement(2620022..2620513)       PHAGE_Salmon_Fels_1_NC_010391: bacteriophage terminase, small subunit; AP074_12885; phage(gi169257184)     8.19e-111           SalmonellaentericaMDGELKNLKCNISQLAAITGLHRQTVVSRLSGVPLAPGSNEKNKLYLLTDVIRVLMETPVSQPAEHQDPNKMTAKERKGWFDSEKGRLWLEKEMKQVVPLPEVRQQMAAIVKAITQVLEVWPDKLEKDKGWSADQLNEAQDVMDEVRILLVKAIQETADDDGE
2620568..2620750                   hypothetical protein; AP074_12890                                                    N/A                 SalmonellaentericaMNKKHTNHHLLKNDIKTESYNMMMHEKSKMRQIPRRCRPVADRPAGSTFLKCEQLSTTTT
2620815..2620982                   lytic enzyme; AP074_12895                                                            N/A                 SalmonellaentericaMKNIITIIVAIIIVFYAGMWSQKFLMEDECLDSGGSYNENGICNIAGSHQDVPPK
complement(2621239..2621772)       PROPHAGE_Salmon_LT2: phage-tail assembly-like protein; AP074_12900; phage(gi16765210)     2.96e-123           SalmonellaentericaMNLLSALLKRYWLQLVFILLMAGAFIVGNVWSDRGWQKKWADRDSAESSQEVNAQTAARIIEQGRVIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAKKLATRLDAAKHTANLAAAVRSKTTNADARMLANMLGDIAEEAKHYAGIADERYRAGMTCERVYDSVRESNNYRRH
complement(2621769..2622056)       PHAGE_Salmon_Fels_1_NC_010391: putative bacteriophage endolysin; AP074_12905; phage(gi169257182)     1.62e-51            SalmonellaentericaMNGNKAFAPRPAKIRITGLENYTRCGVALKLDLVANPGQLELERHAARSAAWFFVTKGCLKYSGDLVRVTQIINGGQNGIGDQRERFEKAKSVLV
2622087..2623193                   PHAGE_Erwini_phiEt88_NC_015295: exodeoxyribonuclease; AP074_12910; phage(gi327198600)     5.60e-52            SalmonellaentericaMPDNTPTTHEENAARLRQAGKCLRDIEAGRFQCDEEKPQPTGELADEPATPEAVEQDTTEHHPDPQPLENEPPVSQTEAGYQKIRAELHEARKNIPPKNPVDVGKQLAAVRGEYAEDISDPNDPKWVPNNYSASNQGEKEEVVPEEKQLAAEPEAVTRNADGTFDVSALFPPPSNQTEKTEARTERDGETPKESNQQETAGDTGQEITTDGGSGTGGDEAGEAADPVENGNFTVPDDIQPGIYYDIPNEAYHAGPGVSKSQLDDIADTPAIYLWRKNAPVDTEKTKSLDTGTAFHCRVLEPEEFSKRFIIAPEFNRRTSAGKEEEKTFLEECARTGITVLTAEEGRKIELMYQSVMALTECIAGEVDQ
2623190..2624269                   PHAGE_Entero_HK022_NC_002166: integrase; AP074_12915; phage(gi9634144)               1.67e-91            SalmonellaentericaMSRKKYDANLPRNLTYRKASKSFFWRNPVTDKEFPLGQIARRDAITQTIEANNFIAQNHTPVALIEKLKGTDSFTVSAWIDRYEVLLQRRSLSVNTYKIRGNQLVTVREKMGEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKNPVEATRIPEIKVARERLQLETCNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKFSDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKNSPTGNIHPDGLTKTFVKARKASGVNFNNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHTSANTTKLYLDERDDKAYMML
complement(2624207..2624386)       hypothetical protein; AP074_12920                                                    N/A                 SalmonellaentericaMSENVRKCPKFVRISVFRSFWLYHNQIKFNIYFTTKIGVLEHHISFIITLIEIEFRGVR
complement(2624662..2625015)       PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; AP074_12925; phage(gi971764937)     8.26e-12            SalmonellaentericaMKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS
complement(2625032..2625907)       copper homeostasis membrane protein CopD; AP074_12930                                N/A                 SalmonellaentericaMMLTFVWITLRFIHFASLMLVYGCALYGAWLAPASIRRLMTRRFLHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILALVTLVVVVIAPVKMQRRLFILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAAAWFGGLLPVAYCMRMAQGRWRQHAISAMMRFSRYGHFFVAGVLLTGIGNTLFITGFTAIWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGGIVLAIVSLFATLEPF
complement(2625908..2626282)       CopC domain-containing protein YobA; AP074_12935                                     N/A                 SalmonellaentericaMASSAPSRRLALLLLASTFATPTAWAHAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK
2626420..2626650                   PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; AP074_12940; phage(gi422936677)     1.23e-22            SalmonellaentericaMKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEVVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK
2626758..2627414                   carbon-nitrogen hydrolase family protein; AP074_12945                                N/A                 SalmonellaentericaMSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKSLPAPPDDALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
2627438..2628136                   PHAGE_Pseudo_H101_NC_029094: exodeoxyribonuclease X; AP074_12950; phage(gi985760125)     7.57e-19            SalmonellaentericaMLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLEDVQADEQRSNGTPQ
2631172..2631184                   attR                                                                                 N/A                 GAAGCGCAAATTA

#### region 2 ####
4475517..4475530                   attL                                                                                 N/A                 GACTCCTGTGATCT
4475700..4476890                   PROPHAGE_Escher_CFT073: putative prophage integrase; AP074_22075; phage(gi26250313)     0.0                 SalmonellaentericaMALTDIQIKRAKPQDKPYTMNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVSLAEAREKRDTARKQVANGIDPVEERKAQKLAQQLSTENSFEAICREWHTNKADRWTVAYREEIIKTFEQDVFPFIGKRSISEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVYRYAIITGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIVMLTGVRTQEMRFATWDEVDLEKGIWEIPAERMKMRRPHIVPLSTQVVDLFKQLKPITGHYPYIFIGRNNRSKPISKESVSQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKNSIRGTYNHAQYLEHRKTMMQWYSDKYSLGVINNGLI
4476877..4479585                   PHAGE_Bacill_phBC6A51_NC_004820: hypothetical protein; AP074_22080; phage(gi31415804)     1.97e-06            SalmonellaentericaMDLFNKHIANILRAKDEESLAIFIGAGVSKSSETKTIKMPSWGDLIDSLISDLNIEGETDYLKIAQLYYLTFGEHLYYKKIKDFFPDNIPHSKIHDLIFKLNPHSVITTNWDTLLEAAINAKTYFYNVISSDKDLMKSYLGKKLIKMHGDFKNHNIVFKEDDYLNYSYKFPLIENYVKSIISTHTVLFLGYSYNDIDLKQIIKWTQNHSSVRPPMYLVVFKDIPAQRKYLESHGIITIILADEKLKPFNNDSYSNKLYTFLYNLNSLELCTNLSDIEIINLIYSRVKSLQSLNAILAEQITRCFTNCGLMYIDDNGPKALLRFYDTEVTSSDNNIELRGFYKKFVSLLNDDEKVEKYKSHLQKLFFIFKKASIYGVILNDKRDRALLTTEILPNDSLIKIDKEINFNYYENITPIRSNIIDKSRQYNCFQLNKLDEAYSIIEEELSEEIRQKDYANILISLFNQNVILHSLKYGFSSDRDNYSTLEENKIHELYDDLPRNIKKTVSVIYDLVTFNYLFNLHYTVSSLLTKYSDVRKRNTRLLIDGDLYKTDFLFENLIIFVLKNGCLIDVYKEFKDVIRKVIEIKIIKNAGKNELSLTKLELYSCIKYIDEKTLTLLLRKEDKKPIKLSVQPKELDWLILIALNNLAKAYSKNSKAFNPVEIKLINTIKLLSLIKVTVDQDSIILKILDDTLKSSYHNLAFYDAISEYIVLRYNAKDDNSSIDGIKSIIDTFLNKLISRNLGGYEIIAIVNRGLANIFSVAENLGVNIEDADKIDKLLLEISSYSNADRARAVETILYDLYRITTGEIREKIKNFIKNTSTVDFSEERKIKFELFLLASGISDNYDNLPERVTKLIENYKGFSFNSEAEVIRNLLRHIVNTRNLSDFSQALSKIEEVMNNYK
complement(4479796..4480362)       PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; AP074_22085; phage(gi9627520)     5.39e-78            SalmonellaentericaMTTVTIQQAFEACQTNKNTWLKRKAELADLEREYREQLLAGDEQIPRRIQDLRDNIDVKKWEINQAAGRYIRSYEEVQHISIRNRLHDFMQQHGAELAATLAPELMGYNEQIPAVKQSAMQHSVDYLREALSVWLAAGEKINYSAQDSDILTAIGFRPDAASRDDNRQKFTPAQNLIYTRRRAELAAR
complement(4480378..4480617)       PHAGE_Entero_186_NC_001317: B protein; AP074_22090; phage(gi9634083)                 5.57e-19            SalmonellaentericaMFHCPFCKKTAHVRTSRYLSENVKQRYHQCTNIECSATFRTIESVDGVIRAAPEKPDPAPVAPPPPRKVQGCYSSPFRH
complement(4480621..4481481)       PHAGE_Entero_P4_NC_001609: head size determination protein sid; AP074_22095; phage(gi9627518)     7.62e-22            SalmonellaentericaMASRFLRSVCASILTTAMNRVVVQEASESFQVEHTESLNMKPELIIKAMQTVISKQDEGAEQRIAGALAALNEAKDAHTASMGKLSDIEASIQRCEQERQTALSESAQAEQDWRSRFRTLRGNLTPELKAEHSKRIASRELADEFTGLITELEKDKNLAMLGACSSGTAYISAHEKAFTTYANSEWKKALTGISPALLRAFLLRIRSLEMSGETSPRATVTRELGDALNLQSALYHFDMEQEPVLSVTGMNRPVITGVDMALLRSPARRMKLAAELAAKDHEQAEG
4481394..4481582                   hypothetical protein; AP074_22100                                                    N/A                 SalmonellaentericaMILTPPAQQHDSLPLSECWHKQTLKTGWPEKGRRKTLLTVCFFTYNYSPLFTLNKKISNTVS
4481905..4482235                   PHAGE_Entero_P4_NC_001609: transcriptional regulator; AP074_22105; phage(gi9627517)     4.79e-43            SalmonellaentericaMHTAFSSPSSAPAAPLMPVSDVVQERFIRLPEVMHLCGLSRSTIYDLISREAFPKQISLGGKNVAWAHSEITAWMTDRIAERNRGYDAPFSKQPLFLACFFSSFPGIG
4482168..4482719                   PHAGE_Entero_P4_NC_001609: putative CI repressor; AP074_22110; phage(gi9627516)      3.84e-44            SalmonellaentericaMMMTVQQTAPFSGLLLFIVSRYSFPAAAKSAAGRRNPSYLLATPDAPCVFFYVVAQAHPFSGLWCLYLSPCQIMVVRAGQPSGWPVSNKAGIPTPVRVTTHERRNSGGGNYRYLLEVAPMATTLTLPHPQFVFVFAAVRRADRKPRICMLRTVAGDEHTARLSLVRDYVLSFAGRLPVAEVRA
4482716..4482943                   hypothetical protein; AP074_22115                                                    N/A                 SalmonellaentericaMRHTTITARDLECLEHMRNVGQLVGDLMQVQDCATVRRDPAQHLQLTSVIYLMTAQLDGVVERCNQQWLTGEGNV
4482940..4483260                   PHAGE_Entero_P4_NC_001609: hypothetical protein; AP074_22120; phage(gi9627513)       1.17e-65            SalmonellaentericaMKKPLPPVLRAALYRRAVACAWLTLCERQHRYPHLTLDALESAIAAELEGFYLRQHGEEKGRQIACALLEDLMEVGPLKAAPSLSFLGLAVMDELCARHITASVLH
4483275..4485608                   PHAGE_Entero_P4_NC_001609: DNA primase; AP074_22125; phage(gi9627512)                0.0                 SalmonellaentericaMKMNVTETVKQACGHWPRILPALGVKVIKNRHQSCPVCGGSDRFRFDDKEGRGTWFCNQCGAGDGLKLVEKVFGVTPSEAAGKVNAVTGNLSPVAPEVIAVAEAETVADRKAAAGLAAKLMEKTRPATSNAYLTRKGFHALECLTLTAIHKTGGVMFRAGDVVVPLYDDTGALVNLQLINADGLKRTLKGGQVKGACHVIEGKKQAGKRLWIAEGYATALTVHHLTSETVMVALSSVNLLSLASLARQKSPACQIVLAADRDLNCDGQSKAAVAADACEGVVALPPVFGDWNDAFIQYGEEATRKAIYDAIRPPAQSPFDTMSEAEFTAMSASDKALRVHEHYGEALAVDANGQLLSRYENGIWKNIPAATFSRNVADLFQRLRAPFSSGKIASVVETLKLIIPQQNTPARRLIGFRNGVLDTQSGLFSPHSKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAGKNPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSADIDTLEDPRKRASLIGFSLIRLPDQEKWSGDGAGLKAITGGDAVSVDPKYQNPYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAVIVRQLMQKFSDPMTARALLQSQQNSDEALSIKRDTDPTFDFCGYLEMLPQTNGMFMGNASIIPRNYRKYLYHAYLAYMEANGYRNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTNLSLKEESYGDWLPKCDEPAAT
4486221..4487828                   PHAGE_Thermu_OH2_NC_021784: hypothetical protein; AP074_22130; phage(gi526118364)     3.99e-14            SalmonellaentericaMLSLSSANKEENETIPELPKLEPQPYQAGKNLKWDNKELKNHPITSKIDIDVICKKIENKSIVITSANDVANLLEVPVGQLLFILYNKKDNYRTFEIKKKNGKSRIINAPQGGLSILQEKLKPIIEYFYRPKKPAHGFIKDKSILTNAEKHTKKKYVVNVDLENYFGSVTFARVYGIFKSKPFNFSHPAASILAQLCTKDGKLPQGACTSPILANLASASLDKHLTQLARRKNITYTRYADDITFSFNQQQVREIITLDNENNFELGEAVISVIEKSGFSINTSKFRVHKRNERQKVTGLVVNEKANVERKYLRVTRSLVHKWREDKLTSALLFVNKKGFKAANNEHAISIFRNHIYGRLSFIKMIRGDDFPLYLKLMAEMSHHDPLKTKEGLRAMKETETYDVFICHASEDKTSIAIPIYEELTKLKISTFIDHVEINWGDSLIQKINSALVKSKYVIAILSANSVDKHWPKKELHSVLAREIAEGEVKLLTLVKEADEAIVAASLPLLSDKLYITYKDNPAEIADKVRALLNK
4487921..4487934                   attR                                                                                 N/A                 GACTCCTGTGATCT
complement(4487976..4488315)       PROPHAGE_Xantho_33913: ISxac3 transposase; AP074_22135; phage(gi21231087)            6.27e-12            SalmonellaentericaMSGKCYPKAFKIKAVKQVIERGHSVSSVATRLDITTHSLYAWIKPPHSRRHHVDLNLTGHTGSSGWNRAVFMAIARSVSICGISGTMRCKQSLVVDATCGDKGSGRIPKSTGAT
