gi|00000000|ref|CP037996.1|  Shigella flexneri strain FC906 chromosome, complete genome. 4655489, gc%: 50.86%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1558706..1559975                   PROPHAGE_Escher_CFT073: transposase insC; CBL25_007610; phage(gi26249447)            8.00e-65            ShigellaflexneriVIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMKNELLKEAVEYGRAKKWIAHAPLLPGMGSKLSQPLSPDVACAVARHSQTNRLDGWPPQSSHYGCASPYTPCYRRAAHVWLSSGMGAASQTGRTWYACDQCQTCLPAHAPECAVAAKTCCTAIETGTYRQSGRERKQSAWCSDGFEFCCDNGETACHVRAGLLSGTALGGDYRRLQQNSTGRHAGSGGTPLRQRSSVVSSGVADGWFMLPGNTPVRPDVGTTEEHGGAESGERNSRELRENDKALHQYHAQTRRVNGSKEPCRGVRALRMASACAGLSLATGISAAAGLWVKQMSGNIG
complement(1560032..1560319)       hypothetical protein; CBL25_007615                                                   N/A                 ShigellaflexneriMDEEYRKDLQLWFGLTHASFCVMPRVFMEAMPPEWQEKMAQLLFEYSDTIKTDVCGVHSCFVTAKDGNNRFMRMPEDILNYRHPRREFIESFLKK
1560415..1561098                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CBL25_007620; phage(gi41057343)     7.00e-67            ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWGKQLRDERQGKTPKASPLPGTNNPAQEKATTHNGENIKKATALLMSDSTVLDNRETQSALSCGHTLPCVRGSSQQLQILEKPSKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTY
complement(1561094..1561462)       hypothetical protein; CBL25_007625                                                   N/A                 ShigellaflexneriMSKHLRPAVLTYHCQFLLHGLSDHVGRGDVFNPQRRINGFMFFSLSVLNLEDHLGLVISPQSPLSAGYITLRACRRSLPLRFSTVTPGGIVGFLIVSYRFNIPDRLAVHLSIHARPELRAHYR
1562182..1563472                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CBL25_007630; phage(gi41057343)     4.17e-16            ShigellaflexneriIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRETGSGNPRWRTAAMPMILSSSSKAPKHRRKPSGRSVGVCSKAVNSGTWIRLKSPMLMTALSFWGTGSFANAVVMARCEWSQRSRRRKPETSPHRQHCYQATTVKAKSIWLNNSTENKAGPCSISSLILRPKSSVISTVSCSGSWLTGWPANTVQVSLPGGGVNHRNRVRAKRGFYLVKPITASSAAKYCTGWWGKARSCSAGGYPKVIPIGRRPEHVYIALYRSGNGVRQAFKWRAGCAERCTSGSGRRAGKSDYALPLTLLWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMA
1563355..1563843                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CBL25_007635; phage(gi41057343)     9.34e-117           ShigellaflexneriLTLLWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
1563837..1564891                   PHAGE_Entero_IME10_NC_019501: terminase large subunit; CBL25_007640; phage(gi422934280)     0.0                 ShigellaflexneriLLTTSPFFPNLVDHLLVKHHTADGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKEADTIYVSRVWKAKEKTAVQAWGAVKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELRDMMLDGRFKVFNTCEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKCATSKNQKRKRYQPQSGPSHGELAA
1564892..1567057                   PHAGE_Entero_IME10_NC_019501: portal protein; CBL25_007645; phage(gi422934281)       0.0                 ShigellaflexneriMADENRLNSILCKFDADWMASDEARTEATNDLYFSRVSQWDDWLSNYTTLQYRGQFDVVRPEVRKLVAEMRRNPVDVLFRPKDGANPDAADVLMGMYRTDMRHNTAKIAVNVGVREQIESGVGAWRLVTQYEDNDPTSNNQVIRRLPIHEACSHVIWDANSKQMDKSDAKHCTVINALSRNGWKEFAEDYGIDPDTLPSFQNPNDTWLFPWVSNDVVYVAEYYEVEEEKEKVFIYRDPLTGEPVSYYQQDIKDVIDDLANRGFIKVAERKVKRRRVYKSIITCTQILKDREKIAGEHIPIVPVYGEWSFAGDKECYEGVVRLTKDGQRLRNMIMSFNADIVARSPKKKPTFFPEQIEGYEYMYGGNDDYPYYLQNRTDENGNDLPIGPISYMENPEVPQANAYMLEAATNAVKEVASLGVDAQAANGQVAFDTVNQLNMRADLETYVFQDNLATAMRRDGEIYASMVNDIYDVPRHVTLTLEDGSEKDVQLYAQVVDYQSGNVVTLNDIRGRYECYTDVGPSFQSMKEQNRAEIQELLTKVPQGTPEFQMLMLQYFTLLDGKGVEMMREYANKQLVMMGLKKPETPEEMEMVQQAQQQPQQPSAEQIQAQGILLQGQAELLKAENQQAQIQVEAAKVEAQNQLNAAKIAEIFNNMDLDKQAELREYLRLVGQFQQQRSKDARANAELLLKDADQTHSQRMDFANLMRQVQIPSGGVAETPQ
1567071..1567982                   PHAGE_Entero_IME10_NC_019501: scaffolding protein; CBL25_007650; phage(gi422934282)     0.0                 ShigellaflexneriMDQTTDIQASEELTLPGNHAAASADGLVVDNANDSAGQEEGFEIVRKDDEKPKQDPATNAEFARRRIERKRQRELEQQMEAVKRGELPEHLRVNPELPKQPDPNDYLSEDALAKYDYDQSRALAAFQQANSEWQIKAMDARSQAVAEQGRKTQEFTQQSAQYVEAARKHYEAAEKLNIPDYQEKEDAFMQLVPPAVGADIMRLFPEKSAALMYHLGANPEKTRQLLAMDGQSALIELTRLSERLTLKPRAKPVSEAPLPDEPIQGHAVAANISAIEKQMEAAANKGDVETYRKLKAQLNKGIR
1567982..1569277                   PHAGE_Entero_IME10_NC_019501: coat protein; CBL25_007655; phage(gi422934283)         0.0                 ShigellaflexneriMALNEGQLVTYALDEIIGTVQNLTPMASKVTKYPPPAESMQRSSNTVWMPVEQEAPTQTGWDLTGNATGILELSVKCNMGDPDNDFFELRADDLRDERSYRRRIQASAKKLANNIESAIAKQATEMGSLVVHDTRAIGPSTGLPGWDFVSDAERLMFSRELNRDMGISYFLNPDDYRKAGRNLVDGDIFGRVPEEAYRNGTIQRQIAGFDEILRSPKLPAVTKSTATGVTVSGAQKFKPQAYTLDTDGNKENVDNRVATVTVSSTTGFKRGDKISFIGVKFLSQMAKNVLTDDATFSITRVIDGTHIEITPKPIALDDASLTKEEKAYANVNTSLADTTPVNVLNVATTTANVFWADDSIRLLSQPIPVTHELFAGMKTSSFSIPGIGVNGIFATQGDINTLSGKCRIAVWYSACAVRPEAIGVGLPNQTA
1569322..1569546                   PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; CBL25_007660; phage(gi389060541)     3.10e-06            ShigellaflexneriMTHMIFRHGDMKKWKGVGYDFEIVKAEELQEYLDAGWFSHPDDLLKDVAEPEEKQRKKPGRKPKAAADEPDNEG
1569524..1570024                   PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; CBL25_007665; phage(gi422934284)     2.82e-122           ShigellaflexneriMNLTTKGDLVLAALRKLGVASNATLTDVEPQSMEDGVNDLEMMMAEWLGGDASPGINVGYIFADADVAPDPGDEHGLSNNAINAVIFNLACRIAPDYALEASAKLITTARYGKERLVKLSAMDRAKAAKCKSGYPNRMPVGSGNQLAKWNGWNYFHRKEPCDNGSE
1570024..1571442                   PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; CBL25_007670; phage(gi422934285)     0.0                 ShigellaflexneriMPIQQLPLMKGVGKDFRNADYIDYLPVNMLATPKEILNSSGYLRSFPGIAKRSDVNGVSRGVEYNMAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPTDSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISNPATGAPSVYIIDSGQVSPIASASIEKILRSYTADELADGVMESLRFDAHELLIIHLPRHVLVYDASSIANGPQWCVLKTGLYDDVYRAIDFVYEGNQITCGDKLESVTGKLQFDISSQYDKQQEHLLFTPLFKADNARVFDLEVESSTGVAQYADRLFLSATTDCINYGREQMIEQNEPFVYDKRVLWKRVGRIRKNVGFKLRVITKSPVTLSGAQIRIE
1571442..1572239                   PHAGE_Shigel_Sf6_NC_005344: gene 9 protein; CBL25_007675; phage(gi41057287)          0.0                 ShigellaflexneriMADSNLNVPVIIQATRLDTSVLPRNIFSQSYLLYVIAQGTDVGNVANKANEAGQGAYDAQVRNDEQDVILADHEQRISAAEATLVNHEERIRQAESTLQDHETRIAQNESDISSLDTRVQSLESQVSDHETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGSLAPFFDTVNNKMVVFNENKTLLFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNAATTTDNILLATFFSVDKDGFLATTIKIIAEQ
1572239..1572694                   PHAGE_Entero_IME10_NC_019501: head assembly protein; CBL25_007680; phage(gi422934287)     2.54e-110           ShigellaflexneriMITFKPTRNIDLIEAVGNHPDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYQEIQPLTLDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
1572697..1573389                   PHAGE_Entero_IME10_NC_019501: DNA transfer protein; CBL25_007685; phage(gi422934288)     1.87e-158           ShigellaflexneriMLYAFKLGRKLRGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAADLQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSKQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAGIGAGIGLLGSLF
1573399..1574730                   PHAGE_Entero_IME10_NC_019501: gp20; CBL25_007690; phage(gi422934289)                 0.0                 ShigellaflexneriMATWQGTNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEEQRNSIGTLAAGARLASSSPEAMQSWLQNNAGELARVGVNPHDVAQMYQQNPRQFGEFVDHLGMNSLGPEKYFDLQDKMQGRQVTMRGQDLDSQTAARNQAITMRGQDIQANLGQQRINLDAETNRINNENKRLDRMLSAETNDLKRQEIQSRIAANNQQLQQKQQALNDGYKDGINTLTTSMFTLNDIVSSPSLKSITGLRGVIPNVPGSQAADTQARLDTFKSQAYLTAVQAMRGMGALSDAEGKKLDQAVGSLQNSQSEESFRRNAGVILNTLNQKRNEAVGKYVQQNGIKRVEAPQASIDYLKQHPELSIDFINRYGYLPSLGQ
1574731..1576461                   PHAGE_Entero_Sf101_NC_027398: transglycosylase; CBL25_007695; phage(gi849122275)     0.0                 ShigellaflexneriMANYRDLLEQAGARYGVPEGLMTALGAKESSYNPAAVSSAGAVGLTQVMPGTWRDMGYTDEQMQNPEYQADAGARYLAKMYQQFGNWRDSLQAYHDGPGNVMKAKRGEYTPGPEGRGYVDDRFAQWAGDPVTDSTVEQRATSAKVHPQQDPNNPFAQLEVQSSEQVSASGVQSDPNNPFAQIEQQAASQQPPQPVSSVAPKPVQQQTVNQANNAPTREEPSLMQQAGDWLTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPYAQAGESIGGYLVPGAGVAGNMVIGSLADAANQRGDFAENAAINAGLSIATHGLINGVTRGVRGASNIISGNKTSAQRATTAPTETSPFSGDAAAATNPAVHAAEARVAQGVPMTPATKNPEEVVRTVAAQKRPNLASSLDELDINPQAEVLESAERLNVDSLLPSHFSGNEQYKAVEQAIKSRAGSALQVQENEAIRQLAQGAGEIIDRVSGAKDALGMSDKFIDTVNGRMSALMKRSDQLYRNVEKAMPAGAKIDAPSTRSMLKQVAEDLGGMKNLDPIEKRVEVA
1576587..1577795                   PROPHAGE_Escher_CFT073: transposase IS629; CBL25_007700; phage(gi26250986)           6.48e-160           ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRRDTARIRKSQGIRCKVWRQLLRECIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLQERLGHIPPAEAEKAYYASIGNDDLAA

#### region 2 ####
1631678..1631689                   attL                                                                                 N/A                 CATCCGGCAATA
1632925..1633622                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_008010; phage(gi46401643)                     5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
1633813..1634916                   glutamate 5-kinase; CBL25_008015                                                     N/A                 ShigellaflexneriMSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRRNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR
1634928..1636181                   glutamate-5-semialdehyde dehydrogenase; CBL25_008020                                 N/A                 ShigellaflexneriMLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESAEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALTQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA
1636296..1636371                   tRNA                                                                                 N/A                 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA
complement(1636386..1636850)       PHAGE_Shigel_SfII_NC_021857: integrase; CBL25_008030; phage(gi526244664)             8.72e-105           ShigellaflexneriMPVHLKESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDLILNPSVPNLSQSRNKEGTNDV
complement(1636877..1638026)       PROPHAGE_Xantho_33913: ISxac3 transposase; CBL25_008035; phage(gi21231087)           2.72e-05            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEFCNCVRRMKLALSEIYKATAYFAQESLKIRVNRTMATTISHSDVSGIWCIQERLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGTSSGAKATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNVGYAMESAQRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
complement(1638092..1638808)       PHAGE_Shigel_SfII_NC_021857: integrase; CBL25_008040; phage(gi526244664)             4.30e-172           ShigellaflexneriMSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGIQLRDITESKIYSAMQKMTNRRHEENWKLRAESCRKKGKPVPEYTPKPASVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSNIINLEWQQINMQRRVAWINPE
complement(1638685..1639119)       PHAGE_Shigel_SfII_NC_021857: excisionase; CBL25_008045; phage(gi526244665)           2.29e-103           ShigellaflexneriMGYDSRLDRLAATSWYPFLNNVTARGEIMEPYSLTLDEACHFLKISRPTAINWIRTGRLQATRKDPTKNKSPYLTTRQACIAALQSPLHTVQVSAGDGITEERKCHSSAEVKYGTPVSHCRTVKDLNSLLEQRTKGRRQNSMTS
complement(1639035..1639340)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CBL25_008050; phage(gi526244666)     5.37e-69            ShigellaflexneriMTTFTDKELIKEIKERISSLDVRDDIERRAYEIALLSLEVEPDEREAYELFMEKRFGDLVDRRRAKNGDNEYMAWDMTLGWIVWQQRAGIHFSTMSQQEVK
complement(1639340..1639717)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CBL25_008055; phage(gi526244667)     5.49e-66            ShigellaflexneriMLPSETMICQPEFTDKTLSRKPGAVQKVNETDAEYLVRKFDELEAKCAAQENKVIPVSTELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA
complement(1639683..1640891)       PROPHAGE_Escher_CFT073: transposase IS629; CBL25_008060; phage(gi26250986)           1.32e-158           ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKNDATAGAAAVQGRTAMQRTAYCPVNVLPLSATATSSGTQCPCAARLAEERDTARIRKSQGIRCKVWRQLLRECIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNCAEVELATLTWVDWYNNRRLPERLGHIPPAEAEKAYYASIGNDDLSA
1640905..1640946                   attL                                                                                 N/A                 TTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAG
1641054..1642210                   PROPHAGE_Escher_CFT073: transposase insF; CBL25_008065; phage(gi26249410)            0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1642256..1642612                   PHAGE_Entero_mEpX2_NC_019705: integrase; CBL25_008070; phage(gi428765639)            8.53e-80            ShigellaflexneriVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISRNGTNTAQEENVVYLNAR
1642749..1642760                   attL                                                                                 N/A                 AAAGCCTTGCAA
1642874..1643236                   PHAGE_Shigel_SfII_NC_021857: putative flipase; CBL25_008075; phage(gi526244663)      2.11e-79            ShigellaflexneriMLKLFVKYTSIGVLNTLIHWVVFGVCIYAAHTSQALANFTGFVVAVSFSFFANARFTFKALTTAMRYMLYVGFMGILSVIVGWAADKCSLPPIVTLITFSAISLVCGFVYSKFIVFRDAK
1643233..1644162                   PHAGE_Shigel_SfII_NC_021857: bactoprenol glucosyltransferase; CBL25_008080; phage(gi526244662)     0.0                 ShigellaflexneriMKISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGILSWVGGPTDVVEYVRAERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISFLYGAWMIIDTLVFGNPVRGYPSLLVSILFLGGVQLIGIGVLGEYIGRIYIEVKNRPKYIIKKSHRGNP
1644159..1645235                   PHAGE_Shigel_SfII_NC_021857: serotype-specific glucosyltransferase; CBL25_008085; phage(gi526244661)     0.0                 ShigellaflexneriMIKINLFKNANLLAFISCFAISIYCYWGWLYDGTLNIDGEFTNNFYQTITLGRWFHTFLRHYFLPEPFSLYITPLIALSFIIISAFIICRSLKLESYELLIGMLVFITFPQISYQLEFLNQADTVGIAFLLAAISAIIFHSQKNRIVIFSGIVLSILSMAIYQTFVTYIIAFVIGLQINSIIRNEKNIRESFYSSCLSLSLIALSTLIYLLLTKAIKHYFSLESNEYISNYIQNASDIKWLVKSAIDNIYNFYNNPPTGLNLYKWLLIPLLILMFTLTYKLKTRSIYLISSIIFIYILPVIFIVVVGSGAPPRLFVLMPIVAVILFSCLSNFRSIKYLNCMFFYLLYLMAFQHPKIYF
1645232..1645618                   PHAGE_Shigel_SfII_NC_021857: serotype-specific glucosyltransferase; CBL25_008090; phage(gi526244661)     3.94e-86            ShigellaflexneriMNDTLARQKDISLAKEISYTSQTKGISLNGKYIYIYGSNDSGNMLSMSADTFGKSFFWWDGGNYFRMVAFMNYYGICNCKPANKEQIEKIYPIVKSLPSWPNPDSIAEINGLVIIKLSEKKGWLPFNI
complement(1646008..1647198)       PHAGE_Shigel_SfII_NC_021857: transposase; CBL25_008095; phage(gi526244660)           0.0                 ShigellaflexneriMPARKVCQTFFRNALASTHQYRQNAIIDSAAALVGGASLSLTSIGRHLPGPARVKDKIKRVDCLLGNKRLHNDIPLIFKNITSMMTNKLSWCVIAVDWSGYPFQEYHVLRASLLCDGRSIPLMSQVFPSKKNNEAVEIAFLDALSGAISPRTRVVIVTDAGFQSAWFRHIKSQGWDFIGRIRGVVKFRLDSDKDKWLDIKMCRGSSEAKYLGTGTLARKKRSQCEGHFYLYKHSPKGRKSRRARGRPGLPTTEKEQKAAGREPWLIFSNTAEFNAKKIMKLYSRRMQIEQNFRDEKSERFGFGLRASRSRRGERFLVLSLLVTLASIVLWLLGYHFENKGFHLKYQANSLKKRRVLSFLTLAENVLRFNPELLRRAQPEKILCRLASTYRSMVLAY
1647648..1648697                   PHAGE_Shigel_SfII_NC_021857: acyltransferase; CBL25_008100; phage(gi526244659)       0.0                 ShigellaflexneriMYNNKIDSNRKIRHDWVDALKFLGIFAIYLGHLGLGAGKLYPFVFSYHVPLFFFAAGFFTIKKNDLSVFDYIKSKFYRLMIPYFTFAFSILIINTINSGETIDYIYNHIYDIIYGVRNNQFVGTIWFINCLFVIIAIDAIFREIVKNNIVILIISLLSFMLSQTVLNHNPLLDPQWFWNIDSAMAYWWLLPLGRCMFLELTRDRFFGKSKIGFIVFSITAIMSAYQLLNQKPLLFKIISIFNADIISSSYIQAINTIITTVGLIIFNIFIAKIICGNDFIVRAGRNTLNICGMEYITKLFIPMALAIIGFSVTIPNPICAIIYTCICVYVSDKIGHWLSRTVGGPFLIK
complement(1649469..1649966)       PHAGE_Shigel_SfII_NC_021857: tail fiber assembly protein; CBL25_008105; phage(gi526244658)     1.28e-104           ShigellaflexneriMSRTLDLILLCRPVQDTVHLLMRITLQWDINKMSYFYSASTNGFYSTEFHGTNIPDDAVEISESEWKTLINAQSVTKMITCGENGHPVIVDRPSPTPEQLALINDEKKSALIAEATNVIAPLQDAVDLGMATDDETKLLLAWKKYRVLLMRVNVVKPEWPMHPNK
complement(1649875..1650525)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CBL25_008110; phage(gi526244657)     2.12e-158           ShigellaflexneriMHRIDTKTAKKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQEELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKSDGTVKTALENLGLGEAAKRNVGTGANQIPDMSLFASINTVTAAAQKFPSGLILQCGQLNGAPNVSSTYGMRFPMTFSRVIAVVVTLNVTGAAGQPTVSATSVQNTGFNITVSPGSGYGSSADAYYIAMGY
1650519..1650609                   HTH-type transcriptional regulator YidZ; CBL25_008115                                N/A                 ShigellaflexneriDAWITLRCTGNSGHYHLFFFAAIYFSLA
complement(1650578..1651729)       PROPHAGE_Escher_CFT073: transposase insF; CBL25_008120; phage(gi26249410)            0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKATAYFAQESLKIRVNRTMATTISYSDVSGIWCIRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1651915..1653078                   PHAGE_Shigel_SfII_NC_021857: integrase; CBL25_008125; phage(gi526244664)             0.0                 ShigellaflexneriMSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGMQLRDITESKIYSAMQKMTNRRHEENWRLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNSSQSKNKEGTNDV
1653304..1653315                   attR                                                                                 N/A                 AAAGCCTTGCAA
1653433..1654599                   PHAGE_Entero_Sf101_NC_027398: O-acyltransferase B; CBL25_008130; phage(gi849122278)     0.0                 ShigellaflexneriMIEINSLLLITSVILMSLLAVGLFDKISPINLVEHGRNNQIDGMRGFLAIFVLIHHAAIWNGYLSSGVWEAPSSNLLANLGQVGVSFFFMITGYLFFSKIISGDQDWTRLYVSRLLRLTPMFIVSLCLIFIIVGFKSGWRMQVSTEELFVSIMKWLPFTALGMPNINDVKDSFTINAAVTWTLVYEWFFYFSLPVISALIKRKVSIYMVMISAISLFVFILFFSKIHIASFLFGLLAFLLNKSKIVNGIAKAKVTPIIITAIMVFEMTYFKTTYAPLPLILCGITFIIIASGCDLYGILRLNITRKLGETTYSVYLLHGIFLYCLMTWIIPNNYTENTFIILVSTTAFLITFTSCLTFKLIETPFIKLTKQTTTLVKELIPTLTNNNQ
complement(1654653..1655276)       PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; CBL25_008135; phage(gi849122277)     6.39e-102           ShigellaflexneriMVLNNPYFEANAGGADLAIDNTGTRPVTVVINGGNFHRVSSARYTHTNIQVTSSGGGKVTVILNGTTFQSAGDYQPSAEQPYWITGANCEVVDIGCVFTETTSKVTSASALSVTRSGKINANGSIDVATGVSSVNVVSTGVYDVSFSHPLAAVASGYIVQITPISAPDSVSCDVTYIGVDTFRVTLRNTLSGAGISSSFAFSITRLI
complement(1655403..1656619)       PROPHAGE_Escher_CFT073: transposase insF; CBL25_008140; phage(gi26249410)            0.0                 ShigellaflexneriMLPSETMIWQPEFTDKTLSRKPGAVQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDIFKKSNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1656585..1657703)       PROPHAGE_Escher_EDL933: IS629 transposase; CBL25_008145; phage(gi15803526)           4.52e-47            ShigellaflexneriMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAETGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
1658008..1658379                   hypothetical protein; CBL25_008150                                                   N/A                 ShigellaflexneriMSKHLRPAVLTYHCQFLLHGLSDHVGRGDVFNPQRRINGFMFFSLSVLNLEDHLGLVISPQSPLSAGYITLRACRRSLPLRFSTVTPGGIVGFLIVSYRFNIPDRLAVHLSIHARPELRAHRK
complement(1658372..1659111)       PHAGE_Stx2_c_1717_NC_011357: putative transposase; CBL25_008155; phage(gi209447180)     3.45e-62            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVCVKSGVSCYGKVSEWPDALWHVSWRLWDLPVFSGVKRSVRPSAGKPLPQATATVSSWQNDLTSCGWLILLAC
1659125..1659166                   attR                                                                                 N/A                 TTCTCAGGAAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAG
1659262..1660377                   PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; CBL25_008160; phage(gi100150)     7.46e-25            ShigellaflexneriMFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMILCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA
1667092..1667103                   attR                                                                                 N/A                 CATCCGGCAATA

#### region 3 ####
2016293..2016306                   attL                                                                                 N/A                 CAACCATAACCTGG
complement(2022074..2022583)       PHAGE_Pseudo_MP22_NC_009818: transposase A; CBL25_009990; phage(gi157834977)         7.00e-06            ShigellaflexneriMKSANEINQWMTPKQITELDGMPGTIQGVHKRAKKEGWPKRSQEGRRGPGVEYIPAIPAMQKIAIEEMNADTLKMFSLLINKLGENEVREIELNMAKYGLSGLMQERPSISVDTLLATLGIDRQTLQTALALHKLPPETRQEILSMYGVHKQEEPVAPLLEPQDAKKAV
2022746..2022991                   PHAGE_Entero_Mu_NC_000929: DNA binding protein ner; CBL25_009995; phage(gi9633495)     5.32e-24            ShigellaflexneriMRKMSNDWHRADVIAALKKTGTPLAKLSRRSGYSTGTLANALVRPWPKGERIIADALNMKPEEIWPSRYLRDHNERVDISN
2022966..2024597                   PHAGE_Entero_SfMu_NC_027382: transposase; CBL25_010000; phage(gi849255233)           0.0                 ShigellaflexneriMREWISAIECMGLSGLPGSLMGVHKRAQREGWLKRRREGIRGVAYEYHISSLPNIARAEVLLQQGKFKTSQGCFEIARPTLEAHDYDREALWSKWDKASDSQRSLAEKWLPSIQATDEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDEAMVVACREGEHALMHLIPAQQRTVEHLDAMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYSIPEDFHITIDNTRGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTSVVAGKGWGQAKPVERAFGVGGLEEYVDKHPALAGAYTGPNPQAKPDNYGDHAVDAELFLKTFAEGVAMFNARTGRETEMCGGKLSFDDVFEREYARTIVRKPTEEQKRMLLLPAEAVNVSRKGEFTLKVGGSLKGAKNVYYNMALMNAGVKKVVVRFDPQQLHSTVY
2024662..2025817                   PROPHAGE_Xantho_33913: ISxac3 transposase; CBL25_010005; phage(gi21231087)           1.63e-10            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGRLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGMSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
complement(2025814..2026059)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; CBL25_010010; phage(gi966201425)     7.28e-17            ShigellaflexneriMAKNDAVIHVHTPFVLTLPDGSRREFVKGRHVVEEDVATHWFTRAHAEVSVGKATDARNEVKNAKELRCTGNSGHYHLFFF
complement(2026101..2027042)       PHAGE_Vibrio_CP_T1_NC_019457: putative major capsid protein; CBL25_010015; phage(gi418489228)     1.38e-14            ShigellaflexneriMITFDQATVDSSGAFLIGELERLDQTLNLPLVGYTWSRDIQLREDASIADDISSWTNTSFAAAGTGANPNGKNWVGKDSTAIAGVNVDIGKSGNPLNLWGMELGWTVIELQAAQQVGRPIDTQKYDGMQLKWQMDNDEQVYVGDSALNLKGLVTLDGVPVNNAAKTWATSTPDEIRASINQVLSDAWAASGYSVVPRDLLIPPEQFALLSSIIVSSAGNQSLLTNLQTNTISYHQNGVPLNIRAVKWLKGRGVGNKDRIVAYTNDKKYVRYPLVPLQSVPVQYRGLYQIVTYYGKLGAVEPVYKETISYVDGI
complement(2027187..2027543)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; CBL25_010020; phage(gi966201423)     3.94e-65            ShigellaflexneriMNNVFLYRMPVGIAGAVSRPQDLTVEPVVLKSDNAFAAYGLAGKYDDDGFFVPLADGDTADKVKGIYVRPYPTTSQPDMVRQVGTGKNFPGDAMKRGYVTVNLGSDFDASTIKKGDLH
complement(2027547..2028767)       PHAGE_Iodoba_phiPLPE_NC_011142: gp27 putative head protein; CBL25_010025; phage(gi197085641)     4.97e-20            ShigellaflexneriMKYFFETRLGETRYRLADGSLLCKDVPIGRTGKQLYGADDLPKLKPDKFVEIVVTRSPEQVFHPATLASFEGMSITILHPEDENGNVRLVNPENWKVLAVGHLQNVRRGTGEQSDLMLADLIVKDESAIQLIEDGLREVSCGYDAEYEQTEPGKAEQVDITGNHVALVPKGRAGNRCAIGDRDTMANQKKNWWNRMRAAIKTGDADTMNELVESAPASVTGDEGDLPQGVNLNINLSPQQPLPDKAPEMGGDPTGDSDDDLKTLLKALLAKLERNATGDNDNKPDDNPTGDGEDDEEETTITGDSAWRAEVIVPGIDLSRKMKPTAFKREVLASADKTLVRQIVGDADIRKLPKQSVDMAFNAVSEVAKGRNTRATTGDAQRLNMGMTSIASLNKQNAEFWANRKG
complement(2028771..2029514)       PHAGE_Salmon_SEN34_NC_028699: putative head morphogenesis protein; CBL25_010030; phage(gi966201421)     1.80e-119           ShigellaflexneriMTNRRSRQAEIRYRTSLRRIARAVGDIVNGRYDGSNDSITEIIAALERYSEIITPWATKVAENFTADLTRQNEKVWRQHSKNISRELRNLVESAPVGQVMQSIIAEQVKYIKSLPLEAADRVYDIQNKAIEAVVTGGRAEQFAKEIASTGDVAKSRADLIARTELGRATGALDMARAIAIGSDGYIWRTADDGDVRDSHDHMKGKFVRWDSPPTLDGMTGHAGELPNCRCYKEIVFVRVPFAMKRAA
complement(2029405..2030871)       PHAGE_Salmon_SEN34_NC_028699: putative portal protein; CBL25_010035; phage(gi966201420)     0.0                 ShigellaflexneriMARNKQALRRTVQATADGYENFIARVGMQTPNQHSASTYRANFTSRNRMLVEWSYRSSWIIGEAVDAIPDDMTRKGIRITSEIDAKDRGILESQLDELQIWDALNDVLKWSRLYGGAVGFIMIEGQAPMTPLRPETIGKGKFKGILPLDRWMVDPALTRRIKDMGPDLGKPEFYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVERIWDRLTAFDSATVGAAQLVYKAHLRTYSVEKLRELIALGGPAYEALLKNIDLIRQFQSNEGMTLMDSRDKFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGFSTGDADLANYYDRISSLQERRLRLPVRRILDIMHRSELGKPLPDDFTFEFNPLWQMSDVDRSTVALNTTNAISTAMGDGLMTLKAAMTDLRENSDVTGIGASITNEDIENAEDEAPPGIGEPDDEPQEPSGGNPVSNQPTQDSEGGRRHRKWSLRWFK
complement(2030871..2031604)       PHAGE_Edward_GF_2_NC_026611: putative terminase large subunit; CBL25_010040; phage(gi764162249)     1.02e-57            ShigellaflexneriAIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWWLTVSEIRLTPLTTENSILWMSSAILVVRCLKSNWNQHLIVISTVTDVWSKVKKTSQNARYRHQTLLMHSLWPSRQSIHRWISGNSWGDRPGA
complement(2031616..2032885)       PROPHAGE_Escher_CFT073: transposase insC; CBL25_010045; phage(gi26249447)            1.57e-65            ShigellaflexneriVIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKVDSARALIARDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGMGAASQTGRTWYACDQCQTCLPAHAPECAVAAKTCCTAIETGTYRQSGRERKQSAMVLRVRVLLRRETACHVRAGLLSGTALGGDYRRLQQNSTGRHAGSGGTPLRQRSSVVSSGVADGWFMLPGNTPVRPDVGTTEEHGGASGERNSRELRENDKALHQYHAQTRRVNGSKEPCRGVRALRMASACAGLSLATGISAAAGLWVKQMSGNIG
complement(2032916..2033623)       PHAGE_Edward_GF_2_NC_026611: putative terminase large subunit; CBL25_010050; phage(gi764162249)     7.65e-118           ShigellaflexneriMAMESVTSMTSTLTSKPTLNPALRSFWTMRARNKVLYGGRSSSKSWDAAGIAIFLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGIDMLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIRLAP
complement(2033550..2034314)       PHAGE_Entero_933W_NC_000924: putative small subunit terminase; CBL25_010055; phage(gi9632516)     9.16e-18            ShigellaflexneriMAKPDWEAIESAYRAGVLSLRDIGEKYGVTEGAIRKRAKKLDWARSGGTQVCKNGTQKRKVRTSRKPAITGLTQKSTQLKTESTPDTKPIRGMRTDPPTNPFQPGNQQALKHGGYARRLLLKDEVIEDAKALTLEDELFRLRANNLVAAENIGRWLVSLEDANGDQERKMLIENISAAEKAMMRNTVRIESIVGTLATVGKIFADTAYRKAATDKVSLEADRLRRDAGIDDGNGERDLNDFYSDIQTDAESGFT
2034512..2035021                   DedA family protein; CBL25_010060                                                    N/A                 ShigellaflexneriMEWINALMNYFVLHPYRLWGLLFIIAFTKSTLLISAILPPASIMMATVITVSKTTLSPWEAGITVMSGAWCGTIVNYHLGIIIGHIPQLACIISSRSNTIERVRLQLQNNSVSILFTSRFIAVLRYIAPLVAGMLQLHPVKVYTVSLISAASWSALYVGSFSFVLPFFS
complement(2035154..2035345)       PHAGE_Salmon_SPN3UB_NC_019545: Rz1; CBL25_010065; phage(gi423262446)                 1.29e-39            ShigellaflexneriMMLFGASLIMVVGCSSKENALCHPQPKPPAPPAWAMMPPSNSLQLLDETFSVSGTESSATRQH
2035428..2036595                   PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; CBL25_010070; phage(gi24373865)      3.52e-09            ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKPSKTRRQTGCITQSGTATWHQPRFGRSKKHRHNGNPERLPDGTLACWQAHERAGAGQLSAADSPVTWWSTCCYPLPKAVRRDRAKSGVVRCDLYLDGALGVPRRCSRPVRKKTSGLGHVVLAGQQAHHESAGNGMGNPWARRGDVPQRSGQSLYEQAVPAVIVAIPDQTEYEPARKLLGQPNGTLLQESEERMDAGGGLRKLQRGSSRHNGLYRWILQCTKTARIRWVTPKRIGKSILEKLLGGQFLLA
2036624..2037046                   DUF1133 family protein; CBL25_010075                                                 N/A                 ShigellaflexneriMFNLMLTSKKLTKTAINEALRRMKKAGLNKSELEAFLRDMINGKQKSWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKCKMAELLNDAHPKWSLRTCERRIEHWLKVAEFILYKPMVMAFGIEKKVIAF
2037236..2037312                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
2037314..2037390                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
2037393..2037467                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGCACCA
2037471..2037545                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
2037879..2038067                   hypothetical protein; CBL25_010100                                                   N/A                 ShigellaflexneriMMLLFRGEELAFSSAFSPVTIRKIMKCPSGEEDRRKKDPPAKTLGMNSFRYSDCWRVKFLMN
2038225..2038314                   PHAGE_Shigel_Ss_VASD_NC_028685: holin lysis protein S; CBL25_010105; phage(gi966200466)     9.96e-09            ShigellaflexneriMYQMEKISTGIAYGTSAGSAGYWFLQWLDQ
complement(2038358..2039510)       PROPHAGE_Xantho_33913: ISxac3 transposase; CBL25_010110; phage(gi21231087)           4.06e-08            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKATAYFAQESLKIRVNRTMATTISHSDVSGIWCIQERLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTCTSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
2039562..2039678                   PHAGE_Entero_Sf101_NC_027398: replication protein O; CBL25_010115; phage(gi849122306)     2.15e-17            ShigellaflexneriSGYLSQRWNDEKPETIQPQSRPSSAITVSKTGYVFFDR
2039786..2041645                   PHAGE_Entero_Min27_NC_010237: putative replication protein P; CBL25_010120; phage(gi170783639)     0.0                 ShigellaflexneriMRPSELSDLLWAQVDRVAPHLLPNGKIEGHEWVAGNVNGDKGNSLKVNLIGKKKWADFAEGDGGDMLDLWMACRGINLHQAMQEAKAFLGIKDDDHHFDARREKKFSRPDRKKIARYVTRTESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELDALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEIDCMSYAQYGISALSVPFGGGKGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSRLGEHRCRLVTLPYKDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYQDTINAFYGKQQYLFNPPWESLADKFQFREAELTLVNGVHGHGKACPLNEPILLADGTWTTHGNVKIGDQVASVDGNPSTVTGIFPQGVRDVYRVTFEDGRYVDCAGDHLWEVTSRGFTKGEKRRVIDTFGLKRLSETKRHKNGVRIPEITGDFGDHSEPLAWVIGSLLGDGSLSNGSVKFSNVEPYMIERMKAELPDYNFSGDGKDWLISTARGQVNPLMETLRGYGLMGCTAKNKFIPRVFFSANKSTRIGMLCGLLETDGYVEKDGTLVFSSASEELRNEVVNKNWPPS
complement(2041620..2042782)       PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; CBL25_010125; phage(gi24373865)      8.67e-05            ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKSYNALKWRMKYKATALLMSDSTVLDNRETQSALSCGHTLPCVRGSSQQLQILENRPENQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPSQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGCSTAIRAVIIRAGSSGSYCGDTRSDRVAGAETAGITAQWNASSGVRTNGCRWWVTASARQLTPRTISLDITAHDRTNITVGYPQTNRKIDTGKTLTRWPVFVGA
2042875..2043753                   PHAGE_Entero_phiP27_NC_003356: putative replication protein DnaC; CBL25_010130; phage(gi18249882)     2.89e-179           ShigellaflexneriMMTFNLREQQKRLQARMDELRAEIAFAQKGEKPWPYRSCLMREGRGYCEKHGEYHTHILVWSDRNGEDREEISCCPDCLIAEANDLTMELSSIKAEELTDNAGIALRFRDCEFDNYLEVNPGAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHLAVAMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEKTADEVIERYASMDLLIIDEVGVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWAFISPRIADRITDGGRNWLSFNWPSYRSRIRGVAA
2043750..2045141                   PHAGE_Entero_phiP27_NC_003356: putative helicase; CBL25_010135; phage(gi18249883)     0.0                 ShigellaflexneriMTTPVWRNDDLEGAVIGAFFLRGADPEVMDILATLPADVFSVRAYQDIYTGICRQARVSGVIDPVLLCNEMPELAPVITDTGRKTWVKSSLEHYVAALRRNAALRDAEKTLNEALQKLRDAHTCEAAEDALKDAQNMMVTLSTGKGVIQPVHIDDVLPEVVERVECRNQGLEKSRTLMTGIDELDAKTGGMEPGDLVFIAARPSMGKTELALDIIDKVTEQGHGVLLFTMEMANIQIGERMVSAAGGMPVSRLKSVAHFEDEDWTRFSQGVGRMTGRNIWMVDQANLAIDEICATTKHHLIKYPETALVVVDYLGLIKTRTTGRHDLAVGEISKGLKGLAKSGGFPLIALSQLSRGVESRPNKRPMNSDLKNSGEIEADADIILMLYRDEVYNPDTQARGIAEINITKQRNGSLGTIYRRFYNGHFLPVDQESARVLSTPMKPGNPRRYSNKRTDSSKMERFF
2045153..2045395                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; CBL25_010140; phage(gi18249884)     4.45e-48            ShigellaflexneriMTFTPEQLRKHAQEMLRHAEQLEKTGITKDAIRKDMVPALRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEALR
2045490..2045690                   PHAGE_Shigel_Stx_NC_029120: NinH; CBL25_010145; phage(gi985761277)                   1.41e-29            ShigellaflexneriMSVKIQTIPELLIQTRGNMTEVSRMLNCNRATVRKYAEDKEGKGHAIVDGVLIVHRGWDRGKDSDA
2045683..2046063                   PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; CBL25_010150; phage(gi985761278)     1.41e-79            ShigellaflexneriMRDIQQVLERWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMVICGCMARLNRNNNDLHDLLVDYYVFGMTFMTLARKHGCSDGYIGKKLQKAEGVVEGMLMMLGVRLEMDKYIEHP
2046263..2046339                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
2046341..2046417                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
2046420..2046495                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
2046499..2046573                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
2046866..2047081                   PHAGE_Entero_VT2phi_272_NC_028656: holin; CBL25_010175; phage(gi966197762)           4.19e-35            ShigellaflexneriMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVRPSQWAAIGVLGSLLLGLLTYLTNLYFKIREDKRKAARGE
2047100..2047714                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; CBL25_010180; phage(gi116221997)     1.53e-40            ShigellaflexneriMNQRFNHLENEITELNKKLSALVSSEDENKRRDEHYAAIYDYCHKVAHETFMKFLQEKFLPAALSEKEAAYLRPEYVITVNSAGEEEHKSDFIASAPDKDQEPHRPFRVSCEEGEFVVYENGKPVRASHHHCLKIINLAIRCLKDENTRVMKRIGRCMGYLQVAAEIEALASGADMDAAVREALLRDFNTPPLRKSLMTGSSRG
2047780..2048313                   PHAGE_Entero_mEp460_NC_019716: endolysin; CBL25_010185; phage(gi428782372)           4.60e-127           ShigellaflexneriMSAKIKYGLSAAVLALIAAGASAPQILDQFLNEKEGNHTTAYRDGSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQKAGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDVGRDCRIRSNNCYGQVIRRDQESALACWGIDQ
2048530..2048724                   PHAGE_Salmon_SPN3UB_NC_019545: Rz1; CBL25_010190; phage(gi423262446)                 7.91e-38            ShigellaflexneriMRKLKMMLFGASLIMVVGCSSKENALCHPQPKPPAPPAWAMMPPSNSLQLLDETFSVSGTGEVA
2048776..2049928                   PROPHAGE_Xantho_33913: ISxac3 transposase; CBL25_010195; phage(gi21231087)           2.75e-06            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKSNSVFCTGVAENTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
2049995..2050279                   PHAGE_Entero_mEp237_NC_019704: terminase small subunit nu1; CBL25_010200; phage(gi435439266)     1.71e-22            ShigellaflexneriMTAEQAVAQQLKNQVSKGNLIDTGFCIFALSKLAMALSSTLDSIPLSMQRQFPDLTPRHIDHLKILIAKGANQCARAGDKLPDLLDEYIRTTTE
2050251..2052180                   PHAGE_Entero_mEp237_NC_019704: terminase large subunit A; CBL25_010205; phage(gi435439267)     3.45e-26            ShigellaflexneriMNISEQQLSNMMVAVTIALQPLVRVLPVTAVEWADQNYYLPKESSYGEGEWKTLQFQVAIMNCMGNDEIRTVNLIKSARVGYTKMVLWCDRVFYAQIPQHSSFSADGLSCRFYEVSRGSNNSCSLPEKTFSLAGPETPGYAHTEAFFLWCGVLVFGWCCCQKLPKICRCGLLRTLLVTGCGKRRFANTAWRTYRFGMAKIHTRFNAKNRLLSDKSCEICAFHAVLCPLPSLRGGAVSEVWRCDVVWPEMGEGTGNGVLPVTWLRDPSVTSDRGALDLQYRDVDVRSDVFQCFGNSAAALHHFPYMDGVQSVHHQGTDSLLAGCTERSQRRENFCEHHAGRDLGRGRGRKTRSPGTDGGCALHGNGACPGGLSDGGHLAAKPFDVCLGVGSGRGSLSGGNHHHGTSGRDAVTCGCGDQKIPPCRRYRNDHFPCLLGYRGDRWRNRVSEVKKTRYFPGTAGKRCLCLWQAGDHHAENPQSAGCVSVGGDGYRKRNSLCPNEGRSHPCEGHIVCHPLSSGDFFADRGTTTGGGGTGGKVGKRKDASVVGQKAARSAGLPGVCLCGITCVRATLATSGCASCIPQGCNCTTDPRTGSEAVRRSEWLQSLA
2052164..2052370                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; CBL25_010210; phage(gi169257234)     2.64e-16            ShigellaflexneriMVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLNELNRAINDAESVLGTTRRRRRPLGVRL
2052367..2053959                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage portal protein; Lambda gpB homolog; CBL25_010215; phage(gi169257233)     0.0                 ShigellaflexneriMKRTPVLIDVNGVPLRESLSYNGGGAGFGGQMAEWLPPAQSADAALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRLNWRWLGMRETTAKSFVGEVEAAWSEYAEGMFGEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWDTETTQLFRTRFKAVSPKRVDTPGHGMGNHFLRAGVEVDRYGRAIAYHICEDDFPFSGAGRWERIPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERMKMLDSLQATQLQSAIVKAMYAATIESELDTEKAFEYIAGAPQGQQDNPLINILEKFTRWYDTNNVTLGGVKIPHLFPGDALNLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSKVSYSSARASANESWRYFMGRRKFIAARLATQMFSCWLEEALLRGIIRPPRARFDFYQARSAWSRAEWISSGRMAIDGLKEVQESVMRIEAGLSTYEKELALMGEDYQDIFRQQVRESAEREKAGLSRPVWIAQAYQQQIAESRRPEEETTSRET
2053949..2055454                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage prohead protease; Lambda gpC homolog; CBL25_010220; phage(gi169257232)     0.0                 ShigellaflexneriMRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQQQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATGAFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVDAVMGTEAAVFEGQSGIEAELADELINASDAISVMAATLNTHDTGGTMPQLTATEAAAQENQRVMGILTCQEAKGREQLATMLAGQQGMSVEQARAILAVAAPQQSGVSAQSEADRIMACEEAKGREQLAATLAAMPEMTVEKARPILAASPQANAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLAAASGRAEPVSASTTAMFEHFMANHSPAAVQGGVPQTSADGDADVKMLMAMP
2055491..2055838                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head decoration protein; Lambda gpD homolog; CBL25_010225; phage(gi169257231)     2.42e-54            ShigellaflexneriMVTKTITEQRAEVRIFAGNDPAHTATGCSGISSATPALTPLMLDEDTGKLVVWDGQKAGHVVGILVLPLEGTETVLTYYKSGTFATEAIHWPERVDTHKKANAFAGSALSHAALP
2055896..2056924                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major capsid protein; Lambda gpE homolog; CBL25_010230; phage(gi169257230)     0.0                 ShigellaflexneriMGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDKITGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLNGPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGEQFETVEVDFGRSVGNNITQAGGTEWSAQDRDTFDPTHDLDAYCDFASGTINIAIMDGKVWRLLNGFKLFREKLDTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPDGTLVLGNTAAEGIRCYGAIQDAQALSEGVVASSRYPKHWLTVGDPAREFTMTQSAPLMVLPDPDEFVVVQVK
2056976..2057362                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; CBL25_010235; phage(gi169257229)     3.14e-12            ShigellaflexneriMATKEENLKRLCELAERLGREPDVSGSAADIAQRVAELEEELGDAGEVAEPDTYSPSKDDPTAHKGESVPEQPGIVTGDETGQVTVVALATLHTKCNGSVIFVSPGTSFRVSAEVAASMAAGGLAKRQ
2057374..2057751                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; CBL25_010240; phage(gi169257228)     4.39e-34            ShigellaflexneriMDGFDNLFDAALAGVNEVILRDMGISAVITSGELEGTHLTGVFDDPESISFVAGGIRLEDSSPCLFVKTADISQLRRQDTLTIGDDSFFVDRITPDDGGCCYIRLRRGSPAPQNNARMRRYDEGT
2057738..2058322                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-tail assembly protein; Lambda gpZ homolog; CBL25_010245; phage(gi169257227)     3.38e-100           ShigellaflexneriMKGLENAIRNLNSLDTRMVPQTSAWAVNRVAAKIVSVATRQVAQNTVAGDNQVKGIPLKTVRERVRLLKASPSGKMYARMRVNRGNLPAIKLGTAQVRLARSRHGSNSRHRGSVLKVGKYLFRDAFIQQLANGRWHVMRRIDGKNRYPIDVVKIPMSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
2058319..2058720                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; CBL25_010250; phage(gi169257225)     8.26e-65            ShigellaflexneriMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFVRAQAPDSELDTWMENTIFPAMKDIPVLSGLIDTMIPLGFNYQRDNEMATWAMAEITYQITYTN
2058731..2059474                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major tail subunit; Lambda gpV homolog; CBL25_010255; phage(gi169257224)     9.03e-106           ShigellaflexneriMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAVTVSAPG
2059535..2059921                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail assembly chaperone; Lambda gpG homolog; CBL25_010260; phage(gi169257223)     3.09e-43            ShigellaflexneriMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
2059930..2060259                   PHAGE_Phage_Gifsy_1_NC_010392: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; CBL25_010265; phage(gi169257222)     2.70e-42            ShigellaflexneriMQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
2060231..2063270                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; CBL25_010270; phage(gi169257221)     0.0                 ShigellaflexneriMDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQAGALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQDYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGVSSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVGQLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDTINQFKRLKDDPVNAAKALDNALHFLNATQLEQIRVLGEQGRSSDAARIAMSALAEETGKRTSDIDNNLNALGSTLQLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYPWTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNETEAARHQREIARINAMQYADQAVRDAAIQRENERYEKPLRKYTGNPGHPVIAAVQSAAGTGGRADCCCQTVSRHCHKDDSATASGPAAAHQRPGREKADGRKECAGPEADSGADAAGCETAGAAETDSARPEKKNGSADQPAGRQRTCTAAAQSGYCHCRYGGAAAALPGTVAHPAGIPATVATAEQSPERHLRDGGLPEGGGAEGEPEATTEKQTLLAGTGSGAGRLEKRCHAGVSEFYGGCGCGGNGRTDVYSGIQQCRCTGDILYHRAEFILHLFPVVRYGQNYGTDGHDAGGKGRRFFIRLHDCWRCLPVCFESLQWHGGPSDVFCFCKRRGCDGGSGTSHSATASRCWAGGCGGYWWFRHGDVCPAVQHDQRRHERADRSGCPEGGLPREKSGRGLYATAGPWWPVKWSIPVA
2063270..2063599                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail tip assembly protein; Lambda gpM homolog; CBL25_010275; phage(gi169257220)     7.35e-57            ShigellaflexneriMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTADFEQVVN
2063631..2064292                   PHAGE_Entero_BP_4795_NC_004813: putative tail fiber component; CBL25_010280; phage(gi157166055)     2.40e-08            ShigellaflexneriMHPCGAVSPGGALGNRSDRGRWALFFCNEQNEKGEPVTGRAAVSGIPHSGSGFELNGRAVLPVRHRSLTCTAWSPGWRKICRVWSAERWSGVRFTPVFWMRTSSTETATPIRNRRSAAGASSSAANARSVPLLCWPHQRRRMARFSRGVSCWRIPVCGLTVLMSVVTRAGQWLTSSTNQQRISGRTNAASVCAGVSCATRWLISAVSFPSINFLSAA
2064447..2065046                   PHAGE_Entero_mEp460_NC_019716: tail fiber component; CBL25_010285; phage(gi428782332)     4.87e-144           ShigellaflexneriMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
2064983..2065585                   PHAGE_Entero_cdtI_NC_009514: putative tail component; CBL25_010290; phage(gi148609399)     2.11e-119           ShigellaflexneriMARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
2065646..2068017                   PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; CBL25_010295; phage(gi148609400)     7.99e-87            ShigellaflexneriMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKTSPLRAKPLRSIWPRWWWVTCRRARLISGCAGHRTAPQTSCRTKRSGRRTPKSSMNSATRTRRWSACRWIQSSSVTSRVAIIIFAGAFCRCRRTITRRRGNTAVSGTERLSQHTATTWPGVCGTCSLIRATAWGNVLVRQMWTNGRCMSSASTATSQCRTDLAARSRASPVTLTPHSVRRGMFSVISARRCAVCRYGTGRRRSCRTDRRIKCGPITAVMWCRMMARRSATASAPRTAIMSLRTGLIRTTVMRRRQSLWRTRRPLSVTVVTSRRWMPLAVPAGDRRTAPGCGLKRNCWKRRPWTSASAQKGFAMYRVMSLKSAMMIMPVSAPVVAYWRTARPDADARPNHAAVLRYHADKPGRKWQSGQRGGSVRHRRREGESEPGSRRCRIQRVGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKRPSWITGHTLTVTGAARMVSRRQRCSIPPKSPQTAGNIRCWRDGTRRRWRVASCFAPWQRTTAVSGWSAQPGRRKPHTASGSWRWGITVQSGRMPGGSRAIRRRYRSGLRHRQRRHILNYRGIFRRWSRNWLYMTRRCSLSSGFRKSGLRISGRLKPAPAILARRCTGPPVSISGRAMIIILRSQCGA
2068131..2069119                   PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; CBL25_010300; phage(gi148609400)     2.52e-88            ShigellaflexneriLWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNPPAFPHLADGRRKMPISAVTTRTPGRSTTSRLIRTVGFWENCPRTRLKAISLKQWANLSHGTPGHRRGGHQGPLPSGFMTISRLIGKLLFPRWRFAVLNMSGRITIFIRHAARKTVLKFITERPWIIRYIRVLLICLPVTVTRWSFLYRHGWMAGIPQQVSAICWLLRNPQQVSVSAGA
2069187..2069786                   PHAGE_Entero_BP_4795_NC_004813: outer membrane protein Lom precursor; CBL25_010305; phage(gi157166058)     2.45e-134           ShigellaflexneriMRKLYAAILSAAICLAVSGAPAWASEHQSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
2069851..2071255                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; CBL25_010310; phage(gi18249920)     3.99e-41            ShigellaflexneriMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRIIWGKVRPRWKHRATFTTGQKAVWRYPAHSALGVLFCLKMLSVLTLRVISARGMRCREYSVAGPYGIIIPDTRFEGCSASGGLMHALRQQNRGTEPNPLLFTALTAPFITPATATGPYPDLGENKYNHRRYYLQNRGELCPQQMGRPHWRADYCCVPGRSRSHQTCQGAVIQRLTTGTGGDFSARYSHRNVYSIPTIFHYGMFRAFITGVILRPVRGAGCTCLWRNARAFYSHIVA
2071206..2071829                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; CBL25_010315; phage(gi730985066)     3.17e-43            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRTWNADASSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVK
2071829..2072008                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; CBL25_010320; phage(gi849255281)     9.25e-07            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGCAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2072009..2073772)       PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; CBL25_010325; phage(gi169257209)     2.72e-09            ShigellaflexneriMKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGAATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPPSLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPDLPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRLPELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
2073864..2073950                   PROPHAGE_Escher_CFT073: transposase; CBL25_010330; phage(gi26246249)                 1.98e-10            ShigellaflexneriQEELLGMWLAENEGVKFWLNVLTELKKRG
complement(2073960..2074040)       PROPHAGE_Escher_MG1655: CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase; CBL25_010335; phage(gi16130281)     1.76e-09            ShigellaflexneriIYNHAQYLDKRREMMLWWADYWLDEKV
complement(2074358..2074834)       kinase inhibitor; CBL25_010340                                                       N/A                 ShigellaflexneriMKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDVERIDVDEGASGAMVGFNVHFHSLASASITAMFS
complement(2074893..2076182)       PHAGE_Mycoba_Alice_NC_028986: gp185; CBL25_010345; phage(gi971763384)                4.15e-06            ShigellaflexneriMTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKTQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
2086335..2086348                   attR                                                                                 N/A                 CAACCATAACCTGG

#### region 4 ####
2099794..2101944                   PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; CBL25_010470; phage(gi100158)     6.38e-26            ShigellaflexneriMALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVTRREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITVPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDELLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEVQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFEPSIDNEEQHIAEMAAFFREQVESKKYLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR
2101972..2102934                   DNA-binding protein YbiB; CBL25_010475                                               N/A                 ShigellaflexneriMDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGGVLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLAILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGAFCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALCLSSVSHPEYIGRVAKFFSDIGGWALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDPAGSELLPQAKDPETTAQWTERCLAGSEAIPESLKIQMACCLVATGEAATISDGLARVNQAF
2103075..2104160                   malate/lactate/ureidoglycolate dehydrogenase; CBL25_010480                           N/A                 ShigellaflexneriMESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGSWQAICDAARQIGMSEETLQAFCQQLAS
complement(2104389..2104649)       PHAGE_Erwini_vB_EamM_Kwan_NC_031010: short tail fibers; CBL25_010485; phage(gi100183)     1.14e-07            ShigellaflexneriMKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSGTAVIYK
complement(2104914..2105180)       PHAGE_Cronob_vB_CsaP_GAP52_NC_019402: phage/conjugal plasmid C-4 type zinc finger protein, TraR family; CBL25_010490; phage(gi414087569)     1.59e-22            ShigellaflexneriMASAWANDDAVNEQINSTIEDAIARARGEIPRGESLYECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDRQLR
complement(2105254..2105940)       PHAGE_Synech_S_PM2_NC_006820: PiuC; CBL25_010495; phage(gi58533039)                  9.34e-24            ShigellaflexneriMMYHIPGVLSPQDVAHFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSALYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQNIQSLKSRYGENEEILSLLNLYHNLLREWSEI
complement(2105982..2107991)       PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; CBL25_010500; phage(gi100064)     5.43e-11            ShigellaflexneriSLTDRHYPGVGAFFAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSAGAAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSWTSRTANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSRIHPGGLTRNGANANGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPAGVAKGSPVTTVDTAKSGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQATDDISVGAGARYIGSIHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLNVYNLFDTDYVASINKSGYRYHPGEPRTFLLTANMHF
2108056..2109383                   PROPHAGE_Escher_MG1655: IS4 transposase; CBL25_010505; phage(gi16132099)             1.07e-54            ShigellaflexneriMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPVPLFRPASAWEVRLSAACSRKQRSSGITPRRIRTGAAPCWPSMVCSGAHRIHQRTMQPSPARHMPGTRRSTRRSKWSARWNPAICRLQPSARRTAKMSLLSNLDKPAITLRWIKVITHWDCMAGAWRENTVTGYLSERERNMKSSENVKAIIWSKPARRHEKSGRDWEMKQPACPRAKEKSAICRRRTPCASPEEKWRICTVIAGKSNWDTGRNRRCNAGREVKSRSLWSKSCGVSYWLIIWDIRLKWRNIKVTGRINVSQNHAEWECHCRALHRDVYRSCAILQVWDNLNYRREGEGPSREWRRGPGNTPQPRKRASQLLAA
complement(2109372..2109701)       TonB-dependent receptor; CBL25_010510                                                N/A                 ShigellaflexneriMENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQANADDTLVVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGNASQLSN
complement(2109966..2110226)       PHAGE_Erwini_vB_EamM_EarlPhillipIV_NC_031007: chaperone for long tail fiber formation; CBL25_010515; phage(gi100168)     2.06e-08            ShigellaflexneriMKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMLGTATIYK

#### region 5 ####
2213449..2213460                   attL                                                                                 N/A                 CCTGTGGTCGCA
2221413..2222087                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; CBL25_011030; phage(gi209447151)     2.25e-09            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
2222084..2222434                   PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_011035; phage(gi209447152)           1.33e-34            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFTKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
2222431..2224032                   PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_011040; phage(gi209447153)           0.0                 ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVLAPGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGGLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGRVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
2224064..2224333                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; CBL25_011045; phage(gi24111655)     9.53e-60            ShigellaflexneriRMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
2224318..2224563                   PHAGE_Salmon_HK620_NC_002730: endopeptidase; CBL25_011050; phage(gi13559860)         1.01e-41            ShigellaflexneriMSGNIGANPVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNARELKLANATITDMQQRQRAADALDAKYTTELANAK
complement(2224572..2225736)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CBL25_011055; phage(gi41057343)     1.33e-66            ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPLPRNKLKSVSSGKSYNALKWRMKYKRLPRSCQTPTVLDNRETQSALSCGHTLPCVRGSSQQLQILENRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGDVPQRSGQSLYEQAVPAVIVAIPDQTEYEPARKLLGQPNGTLLQESEERMDAGGGLRKLQRGSSRHNGLYRWILQCTKTARIRWVTPKRIGKSILEKLLGGQFLLA
complement(2226019..2226231)       PHAGE_Entero_933W_NC_000924: protein MokW; CBL25_011060; phage(gi9632542)            2.75e-41            ShigellaflexneriMLCTCRLASYMPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESRK
2226276..2226455                   PHAGE_Stx2_II_NC_004914: hypothetical protein; CBL25_011065; phage(gi32171073)       1.53e-12            ShigellaflexneriMLTGAFLYLPLVFMPEADSLKHPQSFYLTSHYLANMKSIRKVPHKITPSLLYRSGVDQF
complement(2226412..2227077)       epoxyqueuosine reductase QueH; CBL25_011070                                          N/A                 ShigellaflexneriMTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASEIDYTIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWDYNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE
complement(2227246..2227602)       PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; CBL25_011075; phage(gi100050)     5.46e-12            ShigellaflexneriMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
complement(2227659..2228081)       PHAGE_Shigel_Stx_NC_029120: LygF; CBL25_011080; phage(gi985761265)                   4.79e-67            ShigellaflexneriMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDGEIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
complement(2228096..2228842)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; CBL25_011085; phage(gi169257280)     6.78e-99            ShigellaflexneriMKNIATGGVLERIRRLTPQHVTAPFRTVAEWREWQLAEGQKRSEEINRLNRQLRVEKILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFAFSGKPDTGNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEVMKTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRVVK
complement(2228849..2229632)       PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; CBL25_011090; phage(gi418487646)     9.70e-53            ShigellaflexneriMASNWIKLEVITPDKPEIFRLAEILNIDPDAALGKVIRFWAWADQQMIDGNADCNARGVTKSAIDRITFMSGFADALIQVGWLVENDGGLSLPNFERHNGKSSKKRAVTNERVTKIRELKRKGNAASVTQTDQKALPVEEEEEEEDLNTDLPLNPPRQKRASKKFEPEAIELPDWLPETLWHEWVRFRQALRKPIRTEQGDTGTGKIPSAGFYTAGDSTQHRQIPGPVRAERCSADVAPTGHRLVAGQCDPARLQGVA
complement(2229710..2230132)       PHAGE_Entero_mEp237_NC_019704: CII protein; CBL25_011095; phage(gi435439306)         8.85e-10            ShigellaflexneriMKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELSLVPGKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSPGDSVVVH
complement(2230116..2230343)       PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; CBL25_011100; phage(gi422936651)     8.52e-13            ShigellaflexneriMLKIDAIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQEASGGELQYDPKVYDEYRKAKRPGKVIHENQA
2230420..2230827                   PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; CBL25_011105; phage(gi401817574)     4.38e-39            ShigellaflexneriMKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPESEQKALLSEMRARVENFNKLFEELLKARKRSANK
2231032..2231187                   PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; CBL25_011110; phage(gi472340166)     2.43e-11            ShigellaflexneriMNTIDLGNNESPVYGVFPNQDGTFTAITYTKSKTFKTEAGARRWLGRHSGE
2231189..2231392                   PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; CBL25_011115; phage(gi401817573)     1.44e-16            ShigellaflexneriMNETELKHVIALLLEDAKRLQQLEPNAGTGARIWLAKEALESGDYDSEEAFYKAEGRAGYSPGLGGV
complement(2231369..2231659)       hypothetical protein; CBL25_011120                                                   N/A                 ShigellaflexneriMITDVWKYRGKSTEPEDYEGLHKYMLSLGFRRTIPHGDGSYNQLPDGTYVSEKGGDIYQIRSQISDYADRLSGYRASVFVCEFSQCAWYLYPAKTR
complement(2231634..2232903)       PROPHAGE_Escher_CFT073: transposase insC; CBL25_011125; phage(gi26249447)            1.61e-65            ShigellaflexneriVIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKVDSARALIARDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGMGAASQTGRTWYACDQCQTCLPAHAPECAVAAKTCCTAIETGTYRQSGRERKQSAMVLRVRVLLRRETACHVRAGLLSGTALGGDYRRLQQNSTGRHAGSGGTPLRQRSSVVSSGVADGWFMLPGNTPVRPDVGTTEEHGGAESGERNSRELRENDKALHQYHAQTRRVNGSKEPCRGVRALRMASACAGLSLATGISAAAGLWVKQMSGNIG
2233406..2234254                   PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; CBL25_011130; phage(gi428782357)     3.42e-68            ShigellaflexneriMLNVAIENQNGWNYSAPAPHKTGAGIATPTMTTAHNRAQAVFLCVKHSHIQIMVGRAGQPQGWPVSVVTGCSNPVRLTTHEIATSGGESFKLTIEAAIMATILTLSHPDATIENGRAVTTSVAVAEFFRKMHKNVIQKIETLECSPEFNRLNFKPVTYTDAKGEKRPMYQITKNGFVFLVMGFTGKKAAAFKEAYIAEFDRMEAELRQNNTPPADKMIPGDGRTLVVHFDKFGNVEFTETVPDGALVCTLETFRFYLEKQGWTLVNRGAIKNMTVEQLLSLK
2234271..2234552                   PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; CBL25_011135; phage(gi169257274)     1.44e-06            ShigellaflexneriMNPMLDYCFTSAPQQTITHTGIKNLLWIIKKNLQKGDPDLIPCAYGLCDRQVSPDKAYTAELIYMHGTMMRKKKRKYCSEICAEKDQMAHEL
2234768..2235897                   PROPHAGE_Escher_CFT073: transposase insF; CBL25_011140; phage(gi26249410)            0.0                 ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKFNSVFCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQIAA
complement(2235922..2236566)       PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; CBL25_011145; phage(gi169257272)     1.09e-49            ShigellaflexneriMSTKPLFLLRKAKKSSGEPDVVLWASDDFESTSTTLDYLLVKSGKKLSNYFKAVATNFPVVNDLPPEGEIDFTWSERYQLSKDSMTWELKPGAAPDDVHHQDNAQETKELAGGQEENAQADAHEDCQDCEVSVATLRFTQRLLHIFTYAAGDLKYLHHATREQRKHITALEMDQENSYVQNLLLAIRGMAEPTTLDNAALLRLTDAIKAEVYWQ
complement(2236666..2236898)       racC domain protein; CBL25_011150                                                    N/A                 ShigellaflexneriMVVSAIASTPHIGYVIKTENKETPFTVVDIDGLSGNFKTLVEGATKMCLVYIGNNLPAEKKPNFWQILQNKVKSGA
complement(2236909..2238062)       PROPHAGE_Escher_CFT073: transposase insF; CBL25_011155; phage(gi26249410)            1.31e-99            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKIRVNRTMATTISHSDVSGIWCIQGGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
2238128..2238745                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; CBL25_011160; phage(gi730985066)     9.88e-44            ShigellaflexneriMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQRIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPNSLGRLYPVVMAAKSDIVRDVMTWGDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
2238745..2238924                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; CBL25_011165; phage(gi849255281)     6.52e-08            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2238925..2239877)       invasion protein; CBL25_011170                                                       N/A                 ShigellaflexneriMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIAGIKSELSILWMRKSTWPSRPCSQRNFSSPLPRKCVSMACREQQMTSALPKPWSEAVKRMNLRTGSPSGDHGMLYSVRKLTAGRRQKSRSMRCWRMSTLRGWLTGKHPVAMMRMRRGKQEHRCVRLNSRFTVSLTRYWPCDCLKTAHNCTIHAA
complement(2240123..2240748)       invasion protein; CBL25_011175                                                       N/A                 ShigellaflexneriMREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLLLALKACELINHPYFTKYRTYCKRFLNTYICITTLSNNFGCVRKSIRESAVITRHHQITKRRVVIHTAFITLEFKKTGEQRTANSSISAFSDTGCAQPSYTAPFTETATSFCIQIAA
2241239..2241370                   PHAGE_Entero_P88_NC_026014: DNA invertase; CBL25_011180; phage(gi744692743)          2.75e-12            ShigellaflexneriMLIGYVRVSTNDQNTDLQRNAFICAGSELIVARMGSWPEVVMA
2241630..2242625                   6-phosphogluconolactonase; CBL25_011185                                              N/A                 ShigellaflexneriMKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESVLPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDYSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
complement(2242666..2243619)       PHAGE_Burkho_phi1026b_NC_005284: gp58; CBL25_011190; phage(gi38707948)               1.17e-08            ShigellaflexneriMKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFSLLINLWTDDKDNLWTNIVERQRHALQEIS
2243803..2244855                   4-oxalomesaconate tautomerase; CBL25_011195                                          N/A                 ShigellaflexneriMKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
2244931..2246364                   anion permease; CBL25_011200                                                         N/A                 ShigellaflexneriMNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKLIAYLLIGKIGNTMLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDEVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
2246547..2248727                   hydratase; CBL25_011205                                                              N/A                 ShigellaflexneriMIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
complement(2248868..2250151)       putative acyl-CoA thioester hydrolase; CBL25_011210                                  N/A                 ShigellaflexneriMNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEALNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNASGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEEKK
complement(2250286..2251167)       PHAGE_Entero_HK106_NC_019768: integrase; CBL25_011215; phage(gi428783305)            0.0                 ShigellaflexneriMTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
2260088..2260099                   attR                                                                                 N/A                 CCTGTGGTCGCA

#### region 6 ####
2408721..2408733                   attL                                                                                 N/A                 TGGTTCCAGCCCA
2421615..2422628                   PHAGE_Mycoba_Butters_NC_021061: integrase; CBL25_012060; phage(gi479336499)          2.05e-12            ShigellaflexneriMKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
2422573..2422830                   hypothetical protein; CBL25_012065                                                   N/A                 ShigellaflexneriVPECAHRLMRCRPSLVRGRAAQVNPGGFTTPARRPSVPHRTAGCGKSSLRPLMAGSSPSLPDGSNPSAAIVQSASDVQCSRLLKTT
2422831..2423181                   DUF3330 domain-containing protein; CBL25_012070                                      N/A                 ShigellaflexneriMEVVAEGVETPDCLAWLRQAGCDTVQGFLFARPMPAAAFVGFVNQWRNTTMNANEPSTSCCVCCKEIPLDAAFTPEGAEYVEHFCGLECYQRFQARASTATETSVKPDACDSPPSG
2423307..2423867                   PHAGE_Sodali_phiSG1_NC_007902: resolvase; CBL25_012075; phage(gi89886020)            6.53e-33            ShigellaflexneriMTGQRIGYIRVSTFDQNPERQLEGVKVDRAFSDKASGKDVKRPQLEALISFARTGDTVVVHSMDRLARNLDDLRRIVQTLTQRGVHIEFVKEHLSFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKSLSSERIAELRQRVEAGEQKTKLAREFGISRETLYQYLRTDQ
2423870..2426836                   PROPHAGE_Xantho_33913: Tn5041 transposase; CBL25_012080; phage(gi21231545)           8.67e-46            ShigellaflexneriMPRRSILSAAERESLLALPDSKDDLIRHYTFNDTDLSIIRQRRGPANRLGFAVQLCYLRFPGVILGVDELPFPPLLKLVADQLKVGVESWNEYGQREQTRREHLSELQTVFGFRPFTMSHYRQAVQMLTELAMQTDKGIVLASALIGHLRRQSVILPALNAVERASAEAITRANRRIYDALAEPLADAHRRRLDDLLKRRDNGKTTWLAWLRQSPAKPNSRHMLEHIERLKAWQALDLPTGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALATEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDAFAAIEAVMSWDSFAESVTEAQKLAQPDDFDFLHRIGESYATLRRYAPEFLAVLKLRAAPAAKNVLDAIEVLRGMNTDNARKLPADAPTGFIKPRWQKLVMTDAGIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPEKFTSLKQSSELPLAVATDCEQYLHERLTLLEAQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMVLPHVKITELLLEVDEWTGFTRHFTHLKSGDLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAGHWGDGTTSSSDGQNFRTASKAKSTGHINPKYGSSPGRTFYTHISDQYAPFHTKVVNVGLRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGDAAYDALKPMIGGTLNIKHVRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERAAHALRGNGHAVDDSLLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
2426903..2427280                   GNAT family N-acetyltransferase; CBL25_012085                                        N/A                 ShigellaflexneriMKDYLCKKLFNRLSGTLVIRARCGNNITGLACCNILYPSPRYSGQLHIKELYVSQCDRNKGTGKAIMRFIARLALEQECLSLSWNAEKSNPGANRFYQALGGRINDHIVNYYLHGESLSKLASGI
complement(2427481..2428140)       PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; CBL25_012090; phage(gi937456276)              3.11e-167           ShigellaflexneriMEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA
2428194..2428385                   hypothetical protein; CBL25_012095                                                   N/A                 ShigellaflexneriMILFHYGESWNLLRADQRLIFAKSWPRASRYQQGHQDLFILRSDLPSQVFIRRKVRRVMLPTY
2428419..2429115                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_012100; phage(gi46401643)                     4.85e-57            ShigellaflexneriVASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKTQAAVGNLAHTAGQRHRLRGNGRTVGIRRGIAPALAVLRVQAPEDGCCARIRTHYGDAGASYEPAVTLRGDMDDGWLAAVIPPEGKAARNQQAIYAANAAPESEAAPGTAGTEVAVVLKIGGAAQSHRALSEHKTLSIA
2429132..2429254                   ArsR family transcriptional regulator; CBL25_012105                                  N/A                 ShigellaflexneriVGAALFSLYESKGWLTRHLGYREVTITEKGYAAFKTHFHI
complement(2429232..2429868)       TetR family transcriptional regulator; CBL25_012110                                  N/A                 ShigellaflexneriMMSRLDKSKVINSALELLNEVGIEGLTTRKLAQKLGVEQPTTLYWHVKNKRALLDALAIEMLDRHHTHFCPLEGESWQDFLRNNAKSFRCALLSHRDGAKVHLGTRPTEKQYETLENQLAFFYANKVFFTRECIICTQRCGAFFYFRLRIGRSRASSRRRKGNTYYYAAIITTSYRIISPRCRASLLIRPIDHMRIRKTTMKWVLA
2429947..2431152                   tetracycline efflux MFS transporter Tet(B); CBL25_012115                             N/A                 ShigellaflexneriMNSSTKIALVITLLDAMGIGLIMPVLPTLLREFIASEDIANHFGVLLALYALMQVIFAPWLGKMSDRFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRLLSGITGATGAVAASVIADTTSASQRVKWFGWLGASFGLGLIAGPIIGGFAGEISPHSPFFIAALLNIVAFLVVMFWFRETKNTRDNTDTEVGVETQSNSVYITLFKTMPILLIIYFSAQLIGQIPATVWVLFTENRFGWNSMMVGFSLAGLGLLHSVFQAFVAGRIATKWGEKTAVLLGFIADSSAFAFLAFISEGWLVFPVLILLAGGGIALPALQGVMSIQTKSHQQGALQGLLVSLTNATGVIGPLLFAVIYNHSLPIWDGWIWIIGLAFYCIIILLSMTFMLTPQAQGSKQETSA
complement(2431265..2431858)       tetracyline resistance-associated transcriptional repressor TetC; CBL25_012120       N/A                 ShigellaflexneriMENKNHQQENFKSTYQSLVNSARILFVEKGYQAVSIDEISGKALVTKGAFYHHFKNKKQLLSACYKQQLIMIDAYITTKTDLTNGWSALESIFEHYLDYIIDNNKNLIPIQEVMPIIGWNELEKISLEYITGKVNAIVSKLIQENQLKAYDDDVLKNLLNGWFMHIAIHAKNLKELADKKGQFIAIYRGFLLSLKDK
2431946..2432356                   PHAGE_Xantho_vB_XveM_DIBBI_NC_017981: putative AraC family transcriptional regulator; CBL25_012125; phage(gi389060447)     3.00e-07            ShigellaflexneriMYIEQHSRYQNKANNIQLRYDDKQFHTTVIKDVLLWIEHNLDQSLLLDDVANKAGYTKWYFQRLFKKVTGVTLASYIRARRLTKAAVELRLTKKTILEIALKYQFDSQQSFTRRFKYIFKVTPSYYRRNKLWELEAM
2432421..2433118                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_012130; phage(gi46401643)                     3.04e-60            ShigellaflexneriVASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSRPRAYSRAVTSSSARKWTNSGDTSGLNRASAGCFTRMTGSGRRLLRTYSVNALWRRWGVLACCHPLTWYGRMAGRCMNPARESCTSASDIRSELSGITIGSTWHGWDGSRCRSQNRWSCMTKSSGIITNTINAA
2433115..2433564                   hypothetical protein; CBL25_012135                                                   N/A                 ShigellaflexneriMSWSHYLSPDTNAATVNQTLKCDSKARADQPGACPTTYELYEGDATYRAAIDKALNPVGLNGMFGEDGYMDGPDGGAYPVNINGTTWVEGGGCKAHACGWDYIVTLYNPKTHKVVGYYYNIDPGYLIWFGETGVHEFAYLVRDYVNKTN
2433684..2433857                   DUF905 domain-containing protein; CBL25_012140                                       N/A                 ShigellaflexneriMSRLLPEVPFSREQAVVITTAYRNVFIDDDQGTHFRRVIRNAETDAGRFASDGLLRQ
2433958..2434779                   PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; CBL25_012145; phage(gi414086954)     4.35e-58            ShigellaflexneriMRLASRFGYAANQIRRDRPLTHEELMHYVPSIFGEDRHTSRSKRYAYTPTITVLESLQREGFQPFFACQTRVRDPGRREYTKHMLRLRRAGQITGQHVPEIILLNSHDGSSSYQMLPGYFRAICTNGLVCGQSLGELRVPHRGNVVEKVIEGAYEVVGVFDRIEEKRDAMQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWSAYQTIQENMLKGGISGRSAKGKRIHTRAIHNIDTDIKLNRALWVMAETLLESLR
2434800..2435026                   antirestriction protein; CBL25_012150                                                N/A                 ShigellaflexneriVIQAPESPDAPEALPGCRSISDDDLCAWCTRLLYRPGEISLCRLSIQAMASGHPSVTGTVTRTAVRNFSRISFIPGA
2435121..2435594                   PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; CBL25_012155; phage(gi162135127)     8.52e-17            ShigellaflexneriMKTLSQNTTASACAPETGLQQLVATPVPDEQRISFWPQHFGLIPQWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGNRAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPECSAIMRIID
2435610..2436086                   DNA repair protein RadC; CBL25_012160                                                N/A                 ShigellaflexneriMQQLSFLPGNMTPGERSLILRALQTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
2436149..2436370                   PHAGE_Klebsi_vB_KpnP_KpV41_NC_028670: hypothetical protein; CBL25_012165; phage(gi966198919)     4.77e-15            ShigellaflexneriMRIITRGEAMRIHQQHPASRLFPFCTGKYRWHGSAEAYTGREVQDIPGVLAVFAERRKDSFGPYVRLMSVTLN
2436533..2436907                   type IV toxin-antitoxin system YeeU family antitoxin; CBL25_012170                   N/A                 ShigellaflexneriMSDKLSGITHPDDNHDRPWWGLPCTVRPCFGARLVQEGNRLYYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSGELNPRYQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAPATTS
2436954..2437328                   toxin; CBL25_012175                                                                  N/A                 ShigellaflexneriMKTLSDTHVREVSRCPSPVTIWQTLLIRLLDQHYGLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSTCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
2437325..2437816                   hypothetical protein; CBL25_012180                                                   N/A                 ShigellaflexneriMMKLALTLEADSVNVQALNIGRIVVDVDGIELAELINMVCDNGYSLRVVDESDQTSAECTPPFATLTGIRCSTAHITETDNAWLYSLSHQTSDFGESEWIHFTGSGYLLRTDAWSYPVLRLKRLGLSKTFRRLVVTLIRRYGVSLIHLDASAECLPGLPTFDW
2437828..2438025                   DUF957 domain-containing protein; CBL25_012185                                       N/A                 ShigellaflexneriMKSLTTETALDILIAWLQDNIDCGSGIIFDNDEDKTDSAALLPCIEQAREDVRTLRHLQLLHQNR
2438110..2438673                   PHAGE_Pseudo_phiPSA1_NC_024365: DNA restriction methylase; CBL25_012190; phage(gi658307732)     1.56e-05            ShigellaflexneriMSDITISRPEVVNGHTDVICSTSIRHILAVRKSTLLQIDTLIRQLAEISVLTESIGGKTAPDWAMKQDFRCGCWLMEKPETAMKAITRNLDREIWRDLMQRSGMLSLMDTQARDTWYRSLEYDNFPEISEANILSTFEQLHQNKDEVFERGVINVFRGLNWNYKTNCPCKFGSKIIVNNLVRWDRWG
2444902..2444914                   attR                                                                                 N/A                 TGGTTCCAGCCCA

#### region 7 ####
2540849..2540869                   attL                                                                                 N/A                 CGGTGTAGTTAATGGTGTAGT
2540896..2542125                   PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; CBL25_012750; phage(gi399528791)     7.78e-69            ShigellaflexneriMSRALNKLSDTQLRKINGTPAQKTAFLNDGGNLSVRHSTSGLLTWYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKAAQCRAWLAEGKNPRHELNYTVQEALKPVTVGDALTYWLESYAKENRVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQVAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGELLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWTERLGILAGTHENVTTLPVARRK
2542500..2542688                   PHAGE_Entero_P4_NC_001609: transcriptional regulator; CBL25_012755; phage(gi9627517)     1.17e-10            ShigellaflexneriMLSTDRFIREKECEKLTGLSRSCRYRLEKAGQFPSRRKLGGRSVGWSLSEVLAWKDSCKAVH
2542746..2543192                   hypothetical protein; CBL25_012760                                                   N/A                 ShigellaflexneriMKIEYTPERGRGFVRPGETGKPQNWGFSGIKKAAPKWSRLSEQITRCAVCVCDPKHKHGDDSRYQAGGQCNQSGSVRCHNCEGRVSLYSLRYFSRAKEHGANRSDSCSFFLRRLFRAGDVFSVDSSLVIVCACKAMRRSTSHHGADSFY
complement(2543189..2543368)       hypothetical protein; CBL25_012765                                                   N/A                 ShigellaflexneriMSTHKNERRGNPPFQFRLDPDLREKMEKAQQQDGDDSLAAWIKRIIRKELQQRGIEPKG
2543498..2543698                   host cell division inhibitor Icd-like protein; CBL25_012770                          N/A                 ShigellaflexneriMVAVNHIPHLVHTQTAFVWRFLALSAGESQIIHVTAWTEREARSRCPSGCVAVFAARIRQGETYAQ
2543688..2544134                   hypothetical protein; CBL25_012775                                                   N/A                 ShigellaflexneriMHNKTTPNAAAAALTTLMHALIDIECTAELAQGEEQKDRTQFALECIRYIATRSLNDAKNILVADCENGGVMRDDRFNSLKQEFSGVPDDAADALSSMPELIRAAFFLLSTREYKSTGLDVLNIAADYADFVTEARYLRKTTEDVSYA
2544127..2544360                   hypothetical protein; CBL25_012780                                                   N/A                 ShigellaflexneriMRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSRIATALITLLEPVIMELQEIDLLHDRYKEQHTGE
2544366..2544665                   DUF4222 domain-containing protein; CBL25_012785                                      N/A                 ShigellaflexneriMKLKYSGLTASGNTHPKFTRGDIYRDQYGGMVTIKGVAERRITYRREGYEYDCVMPVYQFRRDFTLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK
2544662..2546410                   PHAGE_Entero_P4_NC_001609: DNA primase; CBL25_012790; phage(gi9627512)               3.21e-103           ShigellaflexneriMKLAPNVKKQPRGIKHKDTEVIIFAGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDLVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQMADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVVIYSEHRATFSKRVINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGRAQVVGSRLIVLADQPKYTGEGTGIKKITGGDPVEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRSKPLNVNDFGKAMKPAAKVYGHEYITRKVKGVTQTNAITTDECDAFL
2546699..2546977                   hypothetical protein; CBL25_012795                                                   N/A                 ShigellaflexneriMHTSGKFNKSFKKRRDRTEPKYRALDMTEHALKVAIRTIDRHAGEGYAKAHPELISAFMTTTAANFATLTEREIAEAEQVTTINVKTGEVES
2546974..2547279                   hypothetical protein; CBL25_012800                                                   N/A                 ShigellaflexneriMSEPKFGEKFYKHNGRITILQISAATPGWWVETDEGSSPVASWELCVLSYPDRDVYQDILPVISTDKGMKPVDIKNMGFQCVMLTEKMMEEMKKNNAGSLH
2547289..2547450                   PerC family transcriptional regulator; CBL25_012805                                  N/A                 ShigellaflexneriMTAQIAAYGQLVGDPLVKQSSKGTPEPPTENYADLRNAVNRTYADMGLSKLAE
2547754..2548911                   PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; CBL25_012810; phage(gi23505451)     3.02e-54            ShigellaflexneriMQRIIELRQQKTAIKNQMRDMLENAEKENRSLNDAEGAKFDELRAKAESLDKDISRLEAIADEERSKPGKSSQTTDPAELRNYILTGETRALSTGVPADGGYTVIPELNTEIMRMLADESTMRRICTVKKISSNEFKQLVSAGGATVNHGEEGKAREQTSTPQINEVSIKLYPVYAYPRTTQEIVDFSDVDILSWLTGEIGDTFTETEESDLVVGDGDKKAKGFLSVPRAEKNDKERDFGTLQVIKPSESLAWTSADPLIDLKFALRKKYRKNAVVVNSTTAAKLQKVKNANGDYIWRDRLQAGDPDTLLGLPVEYLEFMPDNVIALGDFKRGYYIVDHETGVRTRPDNLTEPGFIKIFTQKYLGGGVVDSNAIKILALPEDDD
2548951..2549523                   PHAGE_Entero_IME_EF4_NC_023551: prohead protease; CBL25_012815; phage(gi589893040)     4.59e-36            ShigellaflexneriMGEKIMKSMEIRSSEITTSGAGTLTGYVVRWDKLSELLWGEFYEKFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTGRDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGVELARRSLYEQHPEKMPRADNRRWWADLAGV
2549561..2550736                   PHAGE_Psychr_Psymv2_NC_023734: phage portal protein, HK97 family; CBL25_012820; phage(gi593779762)     2.85e-47            ShigellaflexneriMTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNIRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGIRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAREREGLSPRDGGDEFSQAWKQEVKISEGEKPE
2550733..2551071                   PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; CBL25_012825; phage(gi9634168)     1.29e-34            ShigellaflexneriMNIGRLRDRITIQTLKQTRDITGEILETWEDGHTLWASVNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVSTGPLAGRVLNIIGQPLPDAARTRLEILCREGAEK
2551068..2551364                   PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; CBL25_012830; phage(gi526244642)     8.09e-10            ShigellaflexneriMTEELITLEEVKLHCRIDGDDEDQLISGYIAASLEACQIHIGRRFDDGLAFTPAIKIGCMMFIAHLYENRQIVADNAKTRVPMTIGALWTAYRDVGGY
2551364..2551804                   PHAGE_Bacill_phi105_NC_004167: hypothetical protein; CBL25_012835; phage(gi22855043)     2.20e-25            ShigellaflexneriMPWQPLRRCTEPGCNRRVKSGKCEEHRRAAWRAEDARRGHRRARGYSRQWDKYRAMYLSKNPLCVRCLEKGIYTPAVVVDHIIPINGGDDVLFWPEWNHQPLCQACHNQKTKWLDPATKSKRAAGGFREEEERAANRNNWMYDADE
2551788..2551970                   hypothetical protein; CBL25_012840                                                   N/A                 ShigellaflexneriMTLMNEREQNRLIRGLIRQRDAWKTQETGHKDKASGRAERITAKRLTDRDREVMECFRNR
2552026..2552352                   PHAGE_Psychr_Psymv2_NC_023734: terminase small subunit; CBL25_012845; phage(gi593779760)     4.64e-15            ShigellaflexneriMDDIAVKQWREKSRQLAERGDLTPADWSNLELYCVNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPPETEEEDELDRLE
2552336..2553997                   PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; CBL25_012850; phage(gi100002)     3.08e-100           ShigellaflexneriMTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDNARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV
2554011..2554292                   hypothetical protein; CBL25_012855                                                   N/A                 ShigellaflexneriMTEAEILRLIRRVSGISQQADEQTTQPDSVTAENYARVVAEVMRRDGIQLNGVDMRDIRIRVLEMLAYNRRVELYREKEKITYHWKKPERLRR
complement(2554450..2554638)       hypothetical protein; CBL25_012860                                                   N/A                 ShigellaflexneriMATSSGKHKITSIFNERLNRLFVTVCHWLSLSVTIEVVVILPDRASLRYREYQTVTSPTSSN
2554983..2555003                   attR                                                                                 N/A                 CGGTGTAGTTAATGGTGTAGT
complement(2555090..2556550)       Virulence sensor protein PhoQ; CBL25_012865                                          N/A                 ShigellaflexneriMKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFYTLAQWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE

#### region 8 ####
2749711..2750907                   PROPHAGE_Escher_CFT073: transposase; CBL25_013850; phage(gi26248352)                 0.0                 ShigellaflexneriMTESSDYESVLVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIAALHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
complement(2750921..2751283)       alpha/beta hydrolase; CBL25_013855                                                   N/A                 ShigellaflexneriMKHIQIRNSDMAWHIAANIQFPPNFDESKQYPAIISVHPFGSCKEQTSGNIYGKALAEKGYVVLAYDASFQGESGGPRWIEDPTQRVEDISRVIDYAVTLPYVDAERIGVLGVCGGCPY
complement(2751283..2752203)       alpha/beta hydrolase; CBL25_013860                                                   N/A                 ShigellaflexneriMMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYPAIVVSHPGGGVKEQTAGTYAEKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDVSAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSMFRNGWENNVKSIDALPHIEAGSNARTSDISSEEYAIMPLAPMKEADAPNEELRQAWEYYHTPRAQYPTAPGYATLRSLNQIITYDAYHMAEVYLTQPMQIVAGSQAGSKWMSDDLYDRASSQDKRYHIVEGANHMDLYDGKAYVAEAISVLAPFFEETL
2752341..2752775                   PHAGE_Burkho_phi1026b_NC_005284: gp58; CBL25_013865; phage(gi38707948)               1.39e-08            ShigellaflexneriMKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPILHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGV
complement(2752820..2753972)       PROPHAGE_Escher_CFT073: transposase insF; CBL25_013870; phage(gi26249410)            1.99e-102           ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKQQRILHRSRKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVNINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
2754076..2754486                   PHAGE_Azospi_Cd_NC_010355: hypothetical protein; CBL25_013875; phage(gi168495118)     4.06e-11            ShigellaflexneriMAALPYMQLYIADYLADTMHLSAEEHGAYLLLMFNYWQTGKPIPKNRLAKIARLTNERWVDVEPSLREFFCDNGDEWMHLRIEEDLASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVGVVFEHD
complement(2754500..2755768)       PROPHAGE_Escher_MG1655: IS2 transposase TnpB; CBL25_013880; phage(gi16132094)        1.03e-114           ShigellaflexneriVIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYREGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKVDSARALIARDGEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLIIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
2755926..2756555                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; CBL25_013885; phage(gi169257279)     1.42e-24            ShigellaflexneriMLEGRLSGGTAAEFCNSAVVALQAAGLDVCREYPVPERGDGCGGRIDIVVTDRNGVRCGIELDRNSPRQKSLLKIGAVETGICVLRRSDIARHTEQGILVIGGAVRQKKFDPLSVDLPDWLSETLWHEWVQFRQALRKPIRTELGANGAIRELEKFRQQGFTPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG
2756562..2757305                   PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; CBL25_013890; phage(gi169257280)     1.09e-99            ShigellaflexneriMKNIATGGVLERIRRLTPPHVTAPFRTVAEWREWQLAEGQKRCEEINRLNRQLRVEKILRSGIQPLHRKCSFANYRAQNDGQRHALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLMAKGRSVIIVTVSDVMSVLHESYDNGKSGEKFLQELCGVDLLVLDEIGMQRDTKNEQVVLNQIVDRRTASLRGVGMLTNINHAAMNTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRVVK
2757320..2757742                   PHAGE_Shigel_Stx_NC_029120: LygF; CBL25_013895; phage(gi985761265)                   9.87e-66            ShigellaflexneriMAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDREIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
2757799..2758155                   PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; CBL25_013900; phage(gi100050)     5.46e-12            ShigellaflexneriMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
2758217..2758465                   PHAGE_Entero_933W_NC_000924: hypothetical protein; CBL25_013905; phage(gi9632473)     3.46e-39            ShigellaflexneriMRRPPERAVRNETLFRKKYPRKSRTTEFLFLILFIVLMTPISPQIFVWIIGKIIEPVIELYNDVVWASFNTLHNKINPYKES
2758467..2758832                   PHAGE_Entero_HK225_NC_019717: HNH endonuclease; CBL25_013910; phage(gi428782431)     2.63e-43            ShigellaflexneriMALTKKQRAELRMKFGGRCAYCGCELGEKWHADHVKPVIRFDGNMLHQERDDISNMVPECHPCNLHKHCSSLEDYRRIISDGRREFLASGKGKALVRMGLVEMKSDPVVFWFEIYQEGATA
2758829..2759494                   PHAGE_Escher_Av_05_NC_025830: hypothetical protein; CBL25_013915; phage(gi730985112)     1.37e-44            ShigellaflexneriMTTITKERLQWLANISGRDDIDDIDGGEIRELALIALASLEAEPVAECIVEDGGMCIDGFGEYVGHSLPDGMHELYAAPRMRQPDGWKAVAVAWKVTFTQVDQESNTFTAIYFYKAEVERWVRLHKACDFRADITPLYAAPAVPVAVNDDMAYAFHHALSDSSLGSDEIEEIKTGLRAAFANVTIQPEPIVPDEIGPNDSNTFDYVDGWNACRAAMLKGDK
2759494..2759859                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; CBL25_013920; phage(gi116222036)     1.90e-39            ShigellaflexneriMINRTKLEHILEYARQQKCIGQLCKIPPGDMVEIVEMAMRKAGNSPVTLAGWISCSDAVPAEYCDVILLDDLGNVFPGSWDKVFCPTRGGNKMAFVDKDGVEVESSTHWMPLPEPPQEVNQ
2760232..2760244                   attL                                                                                 N/A                 TTAACATTAATCT
2760257..2760469                   PHAGE_Entero_933W_NC_000924: protein MokW; CBL25_013925; phage(gi9632542)            1.91e-38            ShigellaflexneriMSHKCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
2760706..2760957                   PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; CBL25_013930; phage(gi423262436)     2.22e-06            ShigellaflexneriMDITVCTYKPGGIVEKIKKLFSSKYAVIRRDDLSVIVEMDYFPETPKSIMYRNGRKAIFLPMRVSDIMGNDKLLDELRVRASC
complement(2760975..2761672)       PHAGE_Entero_P1_NC_005856: InsA; CBL25_013935; phage(gi46401643)                     5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
2761806..2762405                   PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; CBL25_013940; phage(gi169257286)     3.06e-69            ShigellaflexneriMAHIQLVKQTSSGLLLPATPESCDFLHQIKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPVGGAITPRERKLVSGFVDYLCESVGREHTPALSDAAEQYLNTVATCRTRDTALLKSFDAFREWVTIQAGFYTEHIYPDGSRGRRAKSIAFANMDETEFQQVYKSVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
2762405..2762695                   PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; CBL25_013945; phage(gi327198620)     1.03e-41            ShigellaflexneriMVDLRKAARGQMCTVRIPGYCNHNPETSVLAHYRLAGTCGTATKPHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL
2762692..2763138                   DUF1133 family protein; CBL25_013950                                                 N/A                 ShigellaflexneriMIYPTNTGKSGEHLRLTTLESVWIQGKLRMWGRWSYIGGGKTGNMFNQLLASKKLTKTAVNEALRRMKKAGIEKPELEAFLREMINGKQKTWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKRKMAELLNDAHPEWCF
complement(2763147..2764312)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CBL25_013955; phage(gi41057343)     3.25e-51            ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVTDAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKSYNALKWRMKYKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATREATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPSQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGCSTAIRAVIIRAGSSGSYCGDTRSDRVAGAETAGITAQWNASSGVRTNGCRWWVTASARQLTPRTISLDITAHDRTNITVGYPQTNRKIDTGKTLTRWPVFVGA
2764367..2764495                   DUF1133 family protein; CBL25_013960                                                 N/A                 ShigellaflexneriMQCATSFRTCCSRVDVWLNLAEYMLYLPMRDAFSSGDLKTVC
2764636..2764821                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; CBL25_013965; phage(gi100057)     2.85e-07            ShigellaflexneriMAGCVGEPKGSPVSVPGYANPAQFATSSIGVVGGDNFQMYGVIVMTTQISVETLSPITHNQ
2764883..2766022                   PROPHAGE_Escher_CFT073: transposase insF; CBL25_013970; phage(gi26249410)            7.07e-168           ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILNCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTNYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2766015..2766575                   PHAGE_Entero_VT2_Sakai_NC_000902: similar to antirepressor of bacteriophage P22; CBL25_013975; phage(gi9633431)     1.39e-62            ShigellaflexneriMLKKRTNGSVRYCQYTSQIPVITTELLAQLYGTEPVRIRQNHHENKVRFVEGKHFFKVVGNDLKELRVALNYSQNPVSPKARSLILWTERGAARHGKMLETDQAWDVFEKLEDCYFSQRDPSTPVSCQKSYDTRVLCYQRGGVTVSTIQLRDDDIVISLESWLELARANGWFVVRRDKLVERLMQL
2766602..2766703                   antiterminator; CBL25_013980                                                         N/A                 ShigellaflexneriTASITVSFAKLYREANSRHGHLKEPALCGFFCA
2766784..2766860                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
2766862..2766938                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGGCCA
2766941..2767016                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
2767020..2767094                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
2767209..2768813                   PROPHAGE_Escher_Sakai: putative integrase; CBL25_014005; phage(gi15834496)           7.73e-22            ShigellaflexneriMIQLSSSHKLPAVYYLYQRNGVYYFRLRVRQSNNDRMTSISLRTKDRRTAMAYSRHIKAALKAIHADRPNATYEEMREHLKDIAECELSMGRSDLFEPDMRDIYRDQYGELGESLTDALASEPLSIDQHRYINEALKVLKACMRRIEAGDSQPLIDYVDLFNDIDRQDNQADSVSLSVNAPEVKPEVTPSITIASLFEQYEAENYQNWKPATLRENKASHAALIEIFDHLGLNADANRADMLRVRDVLQQLPRNRKQRFKDVPLADLLSREDKTDCLDVVTINNKYLIKMAAVFRWAVRNDLIKKNMTEGLELKVPQRKASGARNAFSTEQVGQLLVAAKAYSQKTSGKPYHYYVTALAAITGARLNEIAQLQVKDVRTTEAGTVYIHINEDDSSLPGKSIKNAHSDRCVPLVDGAYGFILADFMALVETRRGADGDDAMVFDGLRLMKNGYGEQVSKWFNRTLLPKVLVDRSGLAFHSFRHTVAAQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVDRLVNVMADVYKET
2769561..2769622                   attL                                                                                 N/A                 TTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACA
2769634..2770800                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CBL25_014010; phage(gi41057343)     1.17e-68            ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKNQTADGLYYAVRYLSYMASATVRPEQEASPQWQPGEATRWDAGLLAGSKSWGWSAVSSRLTGINVVVMNMLLSLTTLKGSSPPNQIRCGAVMPISGRVSAGRTSPLFSTCSQENQWAGPCRSRRTAGSPKRWKWHGKPVVSPAGDVPQRSGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
2771189..2771371                   PHAGE_Escher_bV_EcoS_AKS96_NC_024789: regulatory protein; CBL25_014015; phage(gi682123765)     1.88e-09            ShigellaflexneriMSQQPQQPQQEISIINLDQLVSMTSVEIAELTGKEHRNVLRDIRKMLEELNAGNAANLLI
2771400..2772097                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_014020; phage(gi46401643)                     6.03e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
2772102..2772114                   attL                                                                                 N/A                 GAGTCATTACCCA
2772115..2772992                   PROPHAGE_Escher_CFT073: transposase insF; CBL25_014025; phage(gi26249410)            6.21e-102           ShigellaflexneriGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRLLAA
2773020..2773409                   PHAGE_Entero_SfMu_NC_027382: tail fiber protein; CBL25_014030; phage(gi849255282)     1.03e-28            ShigellaflexneriMPVHLSNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
2773412..2773564                   PHAGE_Escher_D108_NC_013594: tail fiber assembly protein; CBL25_014035; phage(gi281199696)     2.13e-20            ShigellaflexneriMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFARTQLK
2773585..2774061                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; CBL25_014040; phage(gi18249919)     1.35e-65            ShigellaflexneriMVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASRKVLPDLIYREKTMSVVISGALTDGAGIPMSGYHIILKSR
2774077..2775241                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; CBL25_014045; phage(gi18249920)     2.48e-49            ShigellaflexneriMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSWIIWGKVRPRWKHRATFTTGQRPSGDTRRIRLWVCFSARCYPFHEFPGLGKECAARIFRCWPLRHHHTRHTVRGAQHPVDCTPDNRTAVQSQIPYFLRHRPHLSHPLPLLAHIQTDLGENKYNHRRYYLQNRGELCPQQMGRPHWRADYCCVPGRSRSHQTCQGAVIQRLTTGTGGDFSAQYSHRNVYSIPTIFHYGMFRAFITGVILRPVRGAGCSCLWRNARAFYSHIVA
2775192..2775815                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; CBL25_014050; phage(gi730985066)     6.92e-41            ShigellaflexneriMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKLFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQRELKEELNSLKDLNSVRNFIVE
complement(2776016..2776873)       iron/manganese ABC transporter permease subunit SitD; CBL25_014055                   N/A                 ShigellaflexneriMMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFSFDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNAHTQDLLSPN
complement(2776870..2777727)       iron/manganese ABC transporter permease subunit SitC; CBL25_014060                   N/A                 ShigellaflexneriMNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFFDENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRRAHKALEDRS
complement(2777724..2778551)       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; CBL25_014065; phage(gi371496158)     8.48e-14            ShigellaflexneriMMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGSGKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQGDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGTVLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR
complement(2778551..2779465)       iron/manganese ABC transporter substrate-binding protein SitA; CBL25_014070          N/A                 ShigellaflexneriMHSIKKVTMLLGCLALTCSIAFQASATEKFKVITTFTIIADMAKNVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNGVPEVIVSSGVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQRNADTYKAKITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQVRKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTENGPVPTYIDLLKVTTSTLVQGIKAGKREK
complement(2779897..2780550)       PHAGE_Escher_phi191_NC_028660: integrase; CBL25_014075; phage(gi966198071)           2.11e-75            ShigellaflexneriMAALPDPLSKTEFNALMESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVALLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVSSLGTRWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS
2780592..2781289                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_014080; phage(gi46401643)                     6.03e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
2781294..2781306                   attR                                                                                 N/A                 GAGTCATTACCCA
complement(2781306..2781476)       PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage integrase; CBL25_014085; phage(gi169257268)     4.30e-07            ShigellaflexneriMSKLPTGVEIRGKYIRIWFMFRGKRCRETLKGWEITNSNIKKAGNLRALIVHQISSG
complement(2781478..2781645)       DNA-binding protein; CBL25_014090                                                    N/A                 ShigellaflexneriMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYNYPKINQFIKDS
complement(2781693..2782900)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; CBL25_014095; phage(gi157166066)     9.68e-70            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGSDRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGVSWRLWDLPVFSGVKRSVRPSAGKPLPQATATVSSWQNDLTSCGWLILLTSAHGGASSMWRSSLMCLPDTSWGGGSHRPWKRHSCWMHWSRRYGPVDRPARSITVIKVLSMYRWPTHSGLRKPDYWHQQEVQATRMTTRWRRASMVFTKRRYTVRAGKTVQKWNWPHRGWTGITIDDCWKGWATSLRQKQKKLIMLPSETMIWQPGA
complement(2782975..2784086)       PHAGE_Gordon_BritBrat_NC_030942: prohead core protein protease; CBL25_014100; phage(gi100061)     1.34e-15            ShigellaflexneriMALFQRAINTQAYLKAGIMGFAGDGKTYTASELAIGLVMLMRQRGIEAGNRPVMFLDTETGSDWVKPRFDAENIELFTAKTRSFVDLLEAINEAESSGSVMIIDSISHFWTGLCDEYARRRNRKRGLEFSDWAWLKQEWRRFTDRFVNSQAHIIMCGRAGYEYDFFEGDDGKRQLAKTGIKMKAETETGYEPSIRIQMEKQMNIETGQVWRTARILKDRSTRIDGQVFSNPTFKNFLPHIESLNLGGEHPGIDTSRDNSELFANDGTPTWLKEKRAKEIALDEINLMKLSSCSTSTMGAPVTTPNAQKLICWKKHSPPAHGKESKVWTGRQSKLVVMHYGLNWKALNMHSRIHKHKTKRNKQDTMRIFRCAA
complement(2784092..2784412)       PHAGE_Entero_Min27_NC_010237: host-nuclease inhibitor protein Gam; CBL25_014105; phage(gi170783625)     1.87e-53            ShigellaflexneriMSVKLRLPQSAYPIFDRIEEMAWARHYQQIVREEKETELADDLEKGLPQHLFESLCIDHLQRHGANKQAISHAFDDDVEFQERMAEHIRYMAETIAHHQVDIDLED
2784451..2784923                   PROPHAGE_Xantho_33913: ISxac3 transposase; CBL25_014110; phage(gi21231087)           9.04e-10            ShigellaflexneriMSRKTQRYSKFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGAVITTGYSMNPQTENKVMSGNRRLRWHISALAKHAT
2784999..2786163                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CBL25_014115; phage(gi41057343)     2.81e-25            ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSRSGNSERIILWSHSAMCSGFIAAATDTGKPSKTRRQTGCITQSGTATWHQPRFGRSKKHRHNGNPERLPDGTLACWQAHERAGAGQLSAADSPVTWWSTCCYPLPKAVRRDRTKSGVVRCDLYLTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGCSTAIRQALYEQAVPAVIVAIPDQTEYEPARKLLGQPNGTLLQESEERMDAGGGLRKLQRGSSRHNGLYRWILQCTKTARIRWVTPKRIGKSILEKLLGGQFLLA
2786172..2786855                   PROPHAGE_Escher_CFT073: transposase insF; CBL25_014120; phage(gi26249410)            2.28e-167           ShigellaflexneriGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSCKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2786912..2788327)       PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; CBL25_014125; phage(gi169257272)     3.40e-43            ShigellaflexneriMNTDKQVYPLYYEAKNDKVRKRLGIKGGFYWAEAKKLSIAISRGAVAIDDAGYDEDDFKKPVRVNLPVVDDLPPEGVFDTEFCNRYEKGGEDGITMVFIASSPSVQDKPASTDNTNVNGEDMTEIEENMLLPVSGQELPIRWLAQHGSEKPVTHVSRDELQALHIARDEELPAVTALAVSHKTSLLDPLEIRDLHKLVRDTDRVFPNPGNSSLGLMTAFFEAYMDADYTDRGLLTKEWMKGNRVSRITRTASGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARSMDVDIYNLHPAHAKRVEEIIAENKPPFSVFRDKFITMPGGMDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKTQPSGAMADEQATAETMEPDATEHHQNTQPLDAQSQVNSVDEKYQELRAELHEARKNIPPKNPVDADKLLAA
complement(2788427..2788702)       hypothetical protein; CBL25_014130                                                   N/A                 ShigellaflexneriMITSYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLNDGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI
complement(2788777..2788947)       PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; CBL25_014135; phage(gi169257274)     1.04e-06            ShigellaflexneriMTKKIKCAYHLCNKEIEESKIITRPLHFMRGVIPTTEMKKYCSEICAEKDQMAHEL
complement(2788947..2789168)       PHAGE_Shigel_Stx_NC_029120: Kil protein; CBL25_014140; phage(gi985761255)            1.80e-46            ShigellaflexneriMIAHHFGTDEIPRQCVTPGDYILHEGRTYIASANNIKKRKLYIRSLTTKTCISDCMIKVFLGRDGLPVKAESW
complement(2789245..2790517)       PROPHAGE_Escher_CFT073: transposase insC; CBL25_014145; phage(gi26249447)            3.30e-63            ShigellaflexneriVIVLIPVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGMGSKLSQPLSPGVACAVARHSQTNRLDGWPPQSSHLYGCASPYTPCYRRAAHVWLSSGMGAASQTGRTWYACDQCQTCLPAHAPECAVAAKTCCTAIETGTYRQSGRERKQSAMVLRVRVLLRRETACHVRAGLLSGTALGGDYRRLQQNSTGRHAGSGGTPLRQRSSVVSSGVADGWFMLPGNTPVRPDVGTTEEHGGASGERNSRELRENDKALHQYHAQTRRVNGSKEPCRGVRALRMASACAGLSLATGISAAAGLWVKQMSGNIG
complement(2790514..2791402)       PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; CBL25_014150; phage(gi428782357)     6.39e-71            ShigellaflexneriMLNVAIENQNGWNYSASAPHKTGAGRGNPNVTRAHSRAEAVFLCVMHSSIQIMVGCAGQSQDWPGSRVTGISTPVRLTTLMVVENLGGELINLSLEDAIMATIPALSHPDVTIENGRAVTTSVAVAEFFHKRHDNVLRAIANTECSPEFNALNFEDVTYTDTKGEKRPMYQITKNGFVFLVMGFTGKKAAAFKEAYIADVRPHGGRTAPEYPVRQDDSGRSHSGCALRRTRQYQIHRNCSRCTGLYPGYFPVLSGKTGVGSCKPERNKYDRRAAARLAPISRQPVSLIVA
2791903..2792112                   hypothetical protein; CBL25_014155                                                   N/A                 ShigellaflexneriMLKLFNEAKTQAEVDRAVSEINSKLSSIQLEYLSLIDELTISKSNEAALKAKLTEIEKFKFQSEDCEPR
2792478..2792539                   attR                                                                                 N/A                 TTGAAGTGGCACACTGAATTTGGCCACCTGAACAGAGGTGATATGCTCACCTCAGAACAACA
2792622..2793233                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; CBL25_014160; phage(gi157166064)     3.13e-08            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDIRDFSAQYSHRNVYSIPTIFHYGMFRAFITGVILRPVRGAGCSCLWRNARAFYSHIVRNAPWKLKKSLIPVIPKVAQ
2793122..2793745                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; CBL25_014165; phage(gi730985066)     1.24e-41            ShigellaflexneriMLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKPLTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
2793745..2793924                   PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; CBL25_014170; phage(gi849255281)     6.52e-08            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRPPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(2793925..2795640)       T3SS effector E3 ubiquitin-protein ligase IpaH3; CBL25_014175                        N/A                 ShigellaflexneriMSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSTSAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
complement(2795881..2795961)       SAM-dependent methyltransferase; CBL25_014180                                        N/A                 ShigellaflexneriSASRGTFLHTTCYGFLYDLGLRLYLY
2796183..2796880                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_014185; phage(gi46401643)                     5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
2797160..2797606                   PHAGE_Entero_P1_NC_005856: Ppp; CBL25_014190; phage(gi46401710)                      8.79e-44            ShigellaflexneriMKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQSLRCLQLLEQHWVRAVRGNHEQMAMDALAFQQMSLWLMNGGDWFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDV
2797671..2798825                   PROPHAGE_Escher_CFT073: transposase insF; CBL25_014195; phage(gi26249410)            4.05e-85            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPERLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGTSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGERMTKELTGKALFMALRSQRPPAGLIHYSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
2798869..2799057                   PHAGE_Salmon_SP_058_NC_021772: NinI protein; CBL25_014200; phage(gi526003485)        4.93e-15            ShigellaflexneriVYEWQKDVDLHQVLWSRSRLGERPKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGG
2805160..2805172                   attR                                                                                 N/A                 TTAACATTAATCT

#### region 9 ####
2947521..2948218                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_015005; phage(gi46401643)                     6.87e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
2948236..2949112                   IS3 family transposase; CBL25_015010                                                 N/A                 ShigellaflexneriGVAEKYALIEQWRQQFPIEAMCQVFGVSGAVITTGYSMNPQTENKVMSGNRRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRAKLSATPWESAQRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDDCLA
complement(2949137..2949316)       PHAGE_Entero_933W_NC_000924: protein S; CBL25_015015; phage(gi9632510)               9.81e-32            ShigellaflexneriMDQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGSLLFGLLTYLTEVYWQ
complement(2949624..2949812)       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; CBL25_015020; phage(gi209427766)     7.99e-34            ShigellaflexneriMAFKHYDVVRAAPPSDLAEKLTHKLKEGWQPFGSPVAITPYTLMQAIAAEGDVVVSGATEPE
2950072..2950407                   PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; CBL25_015025; phage(gi209447168)     2.29e-54            ShigellaflexneriMKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFTLTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQICPYGLKQQSP
complement(2950688..2950819)       DUF3927 domain-containing protein; CBL25_015030                                      N/A                 ShigellaflexneriVIAYCFCWHCSSRIMSVPADGVLVAGVVVVAFPLLKKKTPDC
complement(2950855..2951181)       hypothetical protein; CBL25_015035                                                   N/A                 ShigellaflexneriMVFSALSIYHSYGVGRVNIDEASGCFILRQRIDIVNAARAKAFSRLTVLFCTPDRLSGRDVIILNSDAIQRVCDEFMVANSELFALVQEYNRIARTCGMDELRITHLG
complement(2951319..2951395)       tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGAATCCAGTACAGCGCGCCA
complement(2951497..2951572)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
complement(2951717..2952538)       PHAGE_Entero_HK225_NC_019717: late gene regulator Q; CBL25_015050; phage(gi428782441)     1.60e-111           ShigellaflexneriMKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNRAEMGFSAFLGKMGISMNDRARATELLADYALSRCDRVAALRKLPAEIKPVVMRIMASYAFEDYARSAASKKQCPCCYGEKFIESIVFTNKIQYPDGKPPVWAKCTKGVYPFYWEEWKKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGYERLPSTEAFNAICEVTNQITRASWEKTVKKFYDALVTRFDIEEAWAERQLKKVTR
complement(2952553..2952909)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; CBL25_015055; phage(gi985761276)     2.55e-46            ShigellaflexneriMLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQRLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQPVSGGRLGVKIYPIMH
complement(2952922..2953971)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; CBL25_015060; phage(gi428782365)     2.08e-135           ShigellaflexneriMRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPQQEKTVVSIAVDPESPESFMKRPKRRRWVNEKYKRWVKTQPCACCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLIFRFLDHAFATGVLG
complement(2953973..2954251)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; CBL25_015065; phage(gi401817580)     3.39e-14            ShigellaflexneriMARNAKYYNHDNSTVLAHTHERYSHAFKSDWYQHPSCTEEQAEWLIQCYRRRGCEVKKALSLDYRHIISVRLPYSEQPPRPSRTFQQRIWR
complement(2954318..2954569)       hypothetical protein; CBL25_015070                                                   N/A                 ShigellaflexneriMMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKNGAALINFVDARVTDGFILRDGEFVTSLQALKEIGIKAGFSAFSEE
complement(2954787..2954942)       PHAGE_Entero_933W_NC_000924: host killer protein; CBL25_015075; phage(gi9632541)     1.00e-25            ShigellaflexneriMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(2955014..2955301)       type II toxin-antitoxin system mRNA interferase RelE; CBL25_015080                   N/A                 ShigellaflexneriMAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
complement(2955301..2955540)       type II toxin-antitoxin system RelB/DinJ family antitoxin; CBL25_015085              N/A                 ShigellaflexneriMGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
2955565..2955870                   hypothetical protein; CBL25_015090                                                   N/A                 ShigellaflexneriMSLQVSHYNMLRASHEGSQKVVVRTVITVRFVPGAAIAKSILYCAGQLFFKESGHHLTGTDTIYFVTVRLHMHNSTYSSIFCFSMSVRCTGNSGHYHLFFF
complement(2955867..2957019)       PROPHAGE_Xantho_33913: ISxac3 transposase; CBL25_015095; phage(gi21231087)           4.47e-08            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKATAYFAQESLKIRVNRTMATTISHSDVSGIWCIQERLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGMSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDDCLA
2957081..2958100                   PHAGE_Burkho_phi1026b_NC_005284: gp59; CBL25_015100; phage(gi38707949)               2.48e-12            ShigellaflexneriSPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
2958189..2959649                   mannitol dehydrogenase family protein; CBL25_015105                                  N/A                 ShigellaflexneriMGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQMDGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLEHPMVAADVQNPHQPKTATGVIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFPSTMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAELVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRHAAYGMMLQEQAPTLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKFDLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIFGDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK
complement(2959685..2959888)       PHAGE_Salmon_SSU5_NC_018843: putative selenium-binding protein YdfZ; CBL25_015110; phage(gi410491512)     4.18e-18            ShigellaflexneriMTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLDLIRLGMN
complement(2960065..2960751)       GntR family transcriptional regulator; CBL25_015115                                  N/A                 ShigellaflexneriMTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIRQENSDWFSEE
complement(2960840..2961586)       PHAGE_Prochl_P_TIM68_NC_028955: hypothetical protein; CBL25_015120; phage(gi971760361)     2.27e-10            ShigellaflexneriMIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELTDELGDNLYIAQLDVRNRAAIEEMLASLPAEWSNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINTLEMMPVTQSYAGLNVHRQ

#### region 10 ####
3290710..3291906                   PROPHAGE_Escher_CFT073: transposase; CBL25_016805; phage(gi26248352)                 0.0                 ShigellaflexneriMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTFYTPQGS
3291933..3292280                   hydrolase; CBL25_016810                                                              N/A                 ShigellaflexneriSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILHAL
3292635..3292883                   PHAGE_Entero_mEp460_NC_019716: DinI-like protein; CBL25_016815; phage(gi428782337)     3.18e-53            ShigellaflexneriMRFEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(3292880..3292970)       capsid protein; CBL25_016820                                                         N/A                 ShigellaflexneriMQERAAAGWTSDSASIEFPAVTDFTCLG
3293484..3295232                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; CBL25_016825; phage(gi169257209)     1.64e-08            ShigellaflexneriMLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEEQRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLTQLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPELLETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLPENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQSLQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLENSVPLRSFDSSLSLLLLMPLRAVRTVSRSHGTISGKPSWSIRHQKAFSIMIPALCSPWAGKCSASKFWRILPGIKSELSILWMRKSTWPSRPCSQRNFSSPLPRKCVSMACREQQMTSALPKHGQKPREIYGLVLLWGPWHAVLSVRKLTAGRRQKSRNMRWLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(3295233..3295412)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; CBL25_016830; phage(gi849255281)     2.65e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(3295412..3295775)       DUF4376 domain-containing protein; CBL25_016835                                      N/A                 ShigellaflexneriMLEAARGQTSGNSMAHRTGGEAVHVMERPHVERRLVSGPPVPGGHAGKICRGTNTYGVECGSAGETVDAGTGRTGGSNGAGAGRSQRDLSPSAGDERGAEQSGFGFNSGVRVA
complement(3295799..3295975)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; CBL25_016840; phage(gi18249921)     1.16e-06            ShigellaflexneriMEIKKIINPRYTESGAVDCDVFFLTTGTRQFPTQPPLMMLHRRVSKSGRNCKVANGVR
complement(3295986..3297395)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; CBL25_016845; phage(gi18249920)     3.47e-72            ShigellaflexneriMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYRYWPISRLTGKIPQKILFTESWRALSATDGETLTLAGLLLRTREKLTVIKSSDLSGAVIQRLTTGTGGDFSARYSHRNVYSIPTIFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
complement(3297460..3298058)       PHAGE_Entero_mEp460_NC_019716: Lom protein; CBL25_016850; phage(gi428782335)         1.06e-39            ShigellaflexneriMRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYAAKNASPVTVIPAGMRIPCVTAGSAWRGCLCAMNGSARMRWRAWLTAVCRPSPGIISALTTKGKRTMCPGVMTTATATRLWRGGLACSLTRPNPWPLTLLMKVPAVATGALTVSSWVSVISSGA
complement(3298126..3301604)       PHAGE_Entero_mEp460_NC_019716: host specificity protein; CBL25_016855; phage(gi428782334)     1.66e-24            ShigellaflexneriMGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVTDSEGRQTFPVLRWCSAPASRSRHRRRGLNLPAQRLCWVRKNTTRRSPGPSRRQTLIVCAPSVCRHWWKPPQRGTGIRRKSACWFRYSVTVAGRKKTSPLRAKPLRSIWPRWWWVTCRRARLISGCAGHRTAPQTSCRTKRSGRRTPKSSMNSATRTRRWSACRWIQSSSVTSRVAIIIFAGAFCRCRRTITRRRGNTAVSGTERLSQHTATTWPGVCGTCSLIRATAWGNVLVRQMWTNGRCMSSASTATSQCRTDLAARSRASPVTLTPHSVRRGMFSVISARRCAVCRYGTGRRRSCRTDRRIKCGPITAVMWCRMMARRSATASAPRTAIMSLRTGLIRTTVMRRRQSLWRTRRPLSVTVVTSRRWMPLAVPAGDRRTAPGCGLKRNCWKRRPWTSASAQKGFAMYRVMSLKSAMMIMPVSAPVVAYWRTARPGRRSTVKSRCRPPVPRAWLTEMAIRSAWRFSPSPTARKAGFLTALQNTACGGSCRRCASACSAAVSVRTTTARMPSPPCSMCRKKRPSWITGHTLTVTGAARMVSRRQRCSIPPKSPQTAGNIRCWRDGTRRRWRVASCFAPWQRTTAVSGWSAQPGRRKPHTASGSWRWGITVQSGRMPGGSRAIRRRYRSGLRHRQRRHLNYRGIFRRWSRNWLYMTRRCSLSSGFRKSGLRISGRLKPAPAILARRCTGPPVSISGRAMIIIFTFAVTPLANRHLWRPSVGRAMMRKVIVFIKDQSGKRISARSCGRRLITVSLRRTLKSGRPLRMSAMKSRKPSIKNWKIRVLQSSRYRKFRLIQIITTACGLSCNRRTDAFILRVSVPVLRIRQQECRVRCCWRQTGLRLILRMATQSRCLLVRAIRYSTTCSNARLRPLPAAVILRHFPHLADGRRKMPISAVTTRTPGRSTTSRLIRTVGFWENCPRTRLKAISLKQWANLSHGTPGHRRGGHQGPLPSGFMTISRLIGKLLFPRWRFAVLNMSGRITIFIRHAARKTVLKFITERPWIIRYIRVLLICLPVTVTRWSFLYRHGWMAGIPQQVSAICWLLRNPQQVSVSAGA
complement(3301665..3302258)       PHAGE_Entero_mEp460_NC_019716: tail assembly protein; CBL25_016860; phage(gi428782333)     5.52e-102           ShigellaflexneriMCLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAEGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
complement(3302204..3302538)       PHAGE_Entero_mEp460_NC_019716: tail fiber component; CBL25_016865; phage(gi428782332)     3.24e-55            ShigellaflexneriMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTLPLASPGMAHLPLRGFATIWPPHRPSCGA
complement(3302590..3302940)       PHAGE_Entero_mEp460_NC_019716: tail fiber component; CBL25_016870; phage(gi428782332)     4.64e-07            ShigellaflexneriMTQTESAILAHANDVRQRSRVASWERRRETGIFPARISPVSRRNGSGWLRRTGCGHKCRVRLWHWSTVIPVVCPAEGPAAAGAEFAVVAGLPGTIHKFRCVPHLTGRRFEHG
complement(3302951..3303648)       PHAGE_Entero_mEp460_NC_019716: minor tail protein; CBL25_016875; phage(gi428782331)     1.21e-124           ShigellaflexneriMQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRQWLTSSTNQQRISGRTNAASVCAGVSCATRWLISAVSFPSINFLSAA
complement(3303648..3303977)       PHAGE_Entero_mEp460_NC_019716: minor tail protein; CBL25_016880; phage(gi428782330)     1.28e-73            ShigellaflexneriMETFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTYSVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTADFEQVVN
complement(3303977..3307019)       PHAGE_Entero_mEp460_NC_019716: tail length tape measure protein; CBL25_016885; phage(gi428782329)     3.72e-107           ShigellaflexneriMDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQDYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGVSSAAEVYIRKWSGQESHTFAGAEKCGSRRELGCSVRWREAILVRGIRDNAGPCRMDRRTDVAERHDDWRRYWRTCRGGHRSGSWHDGRKEGEIPSAGADGTLYRCHCRAVVETQPGHIREWYHATCGSRCAGTGGGQWGISWKRYWYGGESCRTDGAIGWPVGQRYHKSVAAEGSCKCREGAGQCAAFFECHSAADTRPWGAGAVQCGPDRHVCAGRGNRTHIYSQCAGYAAVTVLVEAVLGCGHEYWSRLAGCADCVTGKNSAREKISVDKRLHTGGVRSAASRSSGEKTPEGFAGCKSAGRTELPGATETPECKCRAEPDENGSCTTSAGNCAYCHAVRRPGCQGCGDTAKTLRKSHGIREKYTGNPGHPVIAAVQSAAGTGGRADCCCQTVSRHCHKDDSATASGPAAAHQRPGREKADGRKECAGPEADSGADAAGCETAGAAETDSARPEKKNGSADQPAGRQRTCTAAAQSGYCHCRYGGAAAALPGTVAHPAGIPATVATAEQSPERHLRDGGLPEGGGAEGEPEATTEKQTLLAGTGSGAGRLEKRCHAGVSEFYGGCGCGGNGRTDVYSGIQQCRCTGDILYHRAEFILHLFPVVRYGQNYGTDGHDAGGKGRRFFIRLHDCWRCLPVCFESLQWHGGPSDVFCFCKRRGCDGGSGTSHSATASRCWAGGCGGYWWFRHGDVCPAVQHDQRRHERADRSGCPEGGLPREKSGRGLYATAGPWWPVKWSIPVA
complement(3306991..3307320)       PHAGE_Entero_mEp460_NC_019716: tail assembly protein; CBL25_016890; phage(gi428782328)     1.92e-74            ShigellaflexneriMQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
complement(3307329..3307714)       PHAGE_Entero_mEp460_NC_019716: minor tail protein; CBL25_016895; phage(gi428782327)     9.85e-20            ShigellaflexneriMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEENCRRLNDRLLFCVWEWISMHGWFPAHCGMLSSLRMLRRFAHPLQHGRMMRWARGRRGFCRAVWGPLRMPGMMIMRRRRKSPGA
complement(3307775..3308516)       PHAGE_Entero_mEp460_NC_019716: major tail protein; CBL25_016900; phage(gi428782326)     1.57e-45            ShigellaflexneriMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTRGRNPLVILRRRWHGVRVTAGRKTGSVVRLRSLRVSYQISQRHCCFPRLAELTGNHCLKRRDDPHCENQRCGASVSGRGRHNRGCYRTDGGTGICQCQSGSNHHTDLYSKTRGQQSDQCAFVRSSDCFGDPERACGHGERREAGQCQHRGHDLRRVCGSGCGDRQRTRLA
complement(3308527..3308928)       PHAGE_Entero_mEp460_NC_019716: minor tail protein; CBL25_016905; phage(gi428782325)     1.24e-93            ShigellaflexneriMNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFIRAQAPDSELDMWMESTIFPALNDVPALSGLIDTLNPLGFNYQRDNEMATWAMAEITYQITYTN
complement(3308925..3309515)       PHAGE_Entero_mEp460_NC_019716: minor tail protein; CBL25_016910; phage(gi428782324)     8.78e-104           ShigellaflexneriMKGLENAIRNLNSLDTRMVPQASAWAINRVAQKAVSVATRQVAGNTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNPPAIKLNTTRRRAGEGLRVGKYFFRGAFVQQLANGRWHVLRCLPEARFATGHDHQGRLRKNRLPVEVVKIPLSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
complement(3309502..3309873)       PHAGE_Entero_lambda_NC_001416: head-tail joining protein; CBL25_016915; phage(gi9626253)     1.11e-35            ShigellaflexneriMADFDNLFDVALDLADKAIIRNMGIRAVITSGRLKGIMISGVFDDPENISLVAGGVRIEDSLPSLFVKTADILRLCRNDSLMIGRESFCVDRITPDDGGCSYIRLRREGLPGNVRAGRYYEGA
complement(3309885..3310286)       PHAGE_Entero_HK225_NC_019717: head assembly protein Fi; CBL25_016920; phage(gi428782384)     6.05e-16            ShigellaflexneriMAKKDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELANMDDTDIRDKSAHPENALTGHENEVISAQPETVIQNMDDLVTVVALVTLHTDALHATRDEPLAFVPPGMAFRVFAGVAAGMTERGLARMQ
3310550..3311744                   PROPHAGE_Escher_CFT073: transposase; CBL25_016925; phage(gi26248352)                 1.17e-52            ShigellaflexneriMTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLLDWPCAAPTYTPVKLKLMLVTLPSLPKLPVPCLTRYARNWLTSKSPNSPCSAASMMILPHRQRRPATVSAAFPRYIRHRSAFSVRDLSTRRYSIFSSDIPHQKTRFAGEEAGSPALQTCASSGTPCSRHSSGTGRTNRRRSRHECRCRSTATSGTPAHHAAAKRRGGAGRTASSCSPSLPGPDQYARSRCQDRSQTPHRGRLPRLRLCRTSRCLCWPCAGNSAIRLVNTRASLATGSSQTGVVPVGLRRAQGSALQGLLHPQNESGKTTQSGAYRPGETTLRRSVRHDARRDFLYPAGVIA
complement(3311920..3312110)       hypothetical protein; CBL25_016930                                                   N/A                 ShigellaflexneriIMLLFRGEELAFSSAFSPVTIRKIMKCPPPGRRTVEKRTRQQKHWGTAFATQIAGGSSSIAA
complement(3312444..3312518)       tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
complement(3312522..3312597)       tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCA
complement(3312600..3312676)       tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTCCGAGGTTCGAGTCCTCGGTGGTGGGCCA
complement(3312678..3312753)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCACCA
complement(3312930..3313619)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; CBL25_016955; phage(gi169257244)     1.34e-97            ShigellaflexneriMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGASIPLVSQVAFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQITITHWAWEEFKAHSGTRKIAEKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTGHWVVMKHIFHRLDSEALLFVMRTRSEQKAAFSKQSIAKVD
complement(3313616..3313975)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; CBL25_016960; phage(gi985761276)     1.93e-52            ShigellaflexneriMRHEFILPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLSLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDETNIVRGLPVPGGRLGIKITELECA
complement(3313975..3314196)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; CBL25_016965; phage(gi18249884)     5.83e-25            ShigellaflexneriMGFSAHYWLLLMPFYFRKECPLNSGYLNMVPALRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEVLR
3314179..3315335                   PROPHAGE_Xantho_33913: ISxac3 transposase; CBL25_016970; phage(gi21231087)           2.26e-08            ShigellaflexneriMSRKTQRYSKFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPWSGYYNWVQHEPQTENKVMSGNWRLRWHISALAKHMEPGGSRRSWQRMASSLVVTDWHVFVRSGYAVSRNASSERLRTRTTICQLRQICTRRSLLQHQIRSGWRTRMLPHRRDGCTSLASKMFIRVKLSATPWESAQKSQVKPCLWRSGASAHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRWLLAA
3315378..3315587                   PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; CBL25_016975; phage(gi169257164)     5.42e-19            ShigellaflexneriQRHPDKRFIFNGNEIWKRGESTTEYTRAHQRTIRRLRRLIARKQYTEKWFRKYDTWSAGYYELMATKPF
3315648..3315836                   PHAGE_Cronob_vB_CsaM_GAP31_NC_019400: hypothetical protein; CBL25_016980; phage(gi414086809)     8.44e-05            ShigellaflexneriMNIYFRIVISLAIIACIYGLIVPALISMKDTVAVISGFALACLTPPCIYAIYKGLSFSKDKR
3315833..3316660                   PHAGE_Entero_phiP27_NC_003356: putative serine protease; CBL25_016985; phage(gi18249869)     0.0                 ShigellaflexneriMKKVIPALALVLLTTGLVGCDRVEPGNVGIKVNKLGDDKGVGEVVGVGRYWTGWNTEVYIFPTFKQMKTYDEPFSFQMSDGTTIGYHIGVAYKVDPSKVTTVFQTYRKGVDDITDTDLRQKIADALNRLASKMTTDKFIDGGKSELLDAALKDIQEEMTPIGIQVMSLSYVGKPEYPPTVIDSINAKVTANQKTLQCEQEVKQREAEANMLRAEAAGQADAIRTKAQAEADAIRLRGEALRQNPNVMELEAINKWNGTLPQYMTSGANTPFIQVK
3316704..3317453                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; CBL25_016990; phage(gi18249878)     8.38e-70            ShigellaflexneriMNTVTINNKQFPVIEYRGQRVVTLAMIDEVHQRPEGTARAAFNRNREHFISGVDYAELGADVIRTDLPEGTFSKFAPSGIVLFESGYLMLTKPFNDALAWQVQRELVNSYFRTRTPLTEIEMIAAIAADAVRQQKRLNHVEEQLETVTEAVETIKRGNMRAGYVGYRQVVAKSGMSDTKCRNLVNAYQIPTDTHEFMTPDGLLSRRAIVELEPFMAAFHQMMSEADPRGTRWYHPKMGLFQVIGWEDKA
3317450..3318019                   PHAGE_Shewan_1/41_NC_025458: DNA polymerase III beta subunit; CBL25_016995; phage(gi712915574)     3.99e-34            ShigellaflexneriMIIQSKLIRAALVCAAKNDVRYYLNGLHITPKHIEATNGSVALRMAHGIRTKKNIIVQFEGGVPAKAETTELIFSKEPIAVHRDQFQRRLSITGIKLVDGCFPDLDRIIPKKFDRCTHPVLQAGYLSYPEKMFGRERKFIPVQLRPSGDGQAVRIQFDSIINSMYGNPEFVVMPCRDHGDFNVAQEHPE
3318040..3318138                   DUF551 domain-containing protein; CBL25_017000                                       N/A                 ShigellaflexneriAGGESMSWPDAIVTLGMVFAVAFVVYSICRWG
3318143..3318385                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; CBL25_017005; phage(gi157165989)     8.45e-44            ShigellaflexneriMFALIQRGQIYTDRAGYPVEITRSTEHSVFFRRMDGRTGRVRIGEFSSLFEHIDHLEYHKILAETEQEKHLKKLRAMQRK
3318389..3318535                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; CBL25_017010; phage(gi157165988)     2.12e-25            ShigellaflexneriMNKAFELWVHQRYGNHYDLTRDVDGFYCREIVKRMFEVWCHCRGLSVV
3318544..3318741                   PHAGE_Entero_phiP27_NC_003356: putative excisionase; CBL25_017015; phage(gi18249866)     9.68e-34            ShigellaflexneriMGNVIQLAPNEWVCESVLIAITGLKPGTILRTRKECWMVGREYIHVSPDGNPKPSEVVNKNWPPS
complement(3318716..3319884)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CBL25_017020; phage(gi41057343)     0.0                 ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEIFKKGYRALDVRLPEQFSIIGKLRAHYPVVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3320114..3320464                   DUF72 domain-containing protein; CBL25_017025                                        N/A                 ShigellaflexneriMLILDSRPVHASRPHSEAIRDAQRKKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQAPELVHTLWEDLRKTLPEIGAVPAIPQQSSLF
3320517..3320912                   hypothetical protein; CBL25_017030                                                   N/A                 ShigellaflexneriMVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAICIHGNAVEYIPIAIVLMLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWELVFSLR
3320953..3321696                   PHAGE_Staphy_SPbeta_like_NC_029119: tRNA (cmo5U34)-methyltransferase; CBL25_017035; phage(gi985761180)     1.00e-36            ShigellaflexneriMSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAEDAA

#### region 11 ####
3416333..3416345                   attL                                                                                 N/A                 ATGGCTTATGAAA
complement(3419965..3420234)       PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; CBL25_017625; phage(gi428782810)     1.72e-25            ShigellaflexneriMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
3420291..3420959                   class I SAM-dependent methyltransferase; CBL25_017630                                N/A                 ShigellaflexneriMVKLMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
3421271..3422914                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; CBL25_017635; phage(gi169257209)     2.91e-05            ShigellaflexneriMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(3423091..3423618)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; CBL25_017640; phage(gi730985066)     5.48e-34            ShigellaflexneriMLKKRTNGSVRYCQYTSVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
complement(3423611..3424467)       PROPHAGE_Escher_CFT073: transposase insF; CBL25_017645; phage(gi26249410)            4.13e-108           ShigellaflexneriLIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDKRLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKSQVKPCLWRSGASSHLPGSTTLIEVHSTAHTITGSYRSSLVKHQCRVKVTVTTTLRWKASGERKMRAWATIVLITGMKPSQYGNTLRFSTIVSVVTLVWGISPRQPSGKNIIRLLAA
3424525..3425222                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_017650; phage(gi46401643)                     5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
3425264..3425338                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCTCCA
3425631..3425846                   PHAGE_Entero_VT2phi_272_NC_028656: holin; CBL25_017660; phage(gi966197762)           4.88e-35            ShigellaflexneriMKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGSLVLGFLTYLTNLYFKIREDKRKAARGE
3425945..3426618                   IS66 family insertion sequence hypothetical protein; CBL25_017665                    N/A                 ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGLLLPGSPENTISMITCCLNGKASTRTAYAMMTYRNACLSRWHLIRRSRPDQLQIPSGVTSMMSALRGLPETSHGASCILNQVWNCLTLSLRNCYGRSAKKGVSDGA
3426615..3426965                   PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_017670; phage(gi209447152)           6.69e-34            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
3426962..3427457                   PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_017675; phage(gi209447153)           4.45e-07            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKSVISLKIRSDRQKTTVGTGKPAEHSQKSSGRCIVSHRFTHQSPVRKPDRQAIPGTKIFTKTAAGRTSPGDTSPSACNQLPGLWRCSERNGGNNLRATGYHYRC
3427513..3428210                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_017680; phage(gi46401643)                     5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
complement(3428213..3428287)       tRNA                                                                                 N/A                 GCCGACTTGGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAATGACTCCA
complement(3428290..3428366)       tRNA                                                                                 N/A                 CCGCCACTAGCTCATCAGGAAAGAGCGTCAACCCTTTAAGTTGAGTGTGCGAGGTTCGAGTCCCCGGTGGCGGTCCA
complement(3428368..3428443)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
complement(3428501..3428623)       antiterminator; CBL25_017700                                                         N/A                 ShigellaflexneriMPILYVMAKANKTRPQAGFFVPLISDRHGECAGGGDKGDF
complement(3428654..3429343)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; CBL25_017705; phage(gi169257244)     8.79e-103           ShigellaflexneriMNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGTSIPLVSPVEFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQIAITQWAWNEFNAQSGTRKIAGKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTRHWVAMKHIFHRLDSEALLFVMRTRSKQKTAFSKQSVAKVD
complement(3429340..3429705)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; CBL25_017710; phage(gi985761276)     2.35e-51            ShigellaflexneriMTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLNLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVRGQLVPGGRLGIKITELGCA
complement(3429706..3430764)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CBL25_017715; phage(gi526244681)     6.18e-111           ShigellaflexneriMRVLLRPVLVPELGLVVLKPGRESMPVFHNGRILVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPPQEETVVSIAVDPESPAQYLQRQKPQREEMPVYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTKADDLFVIPLCRKCHNELHAGVKDFEEKHGSQLLLLIRFLMHARNSGVLKWKA
complement(3430766..3431044)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; CBL25_017720; phage(gi401817580)     3.41e-12            ShigellaflexneriMAHDTKFYNSDNSAAPASRHGRRSHAFKSDGYQHDPCTEEQAEWLIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR
3430985..3431170                   hypothetical protein; CBL25_017725                                                   N/A                 ShigellaflexneriMPAGRGGRVIRIVKFGIVRHLFSLLAQQVPVVQADGWIVNQNDQKKQNPPKRVKCGCVEDA
complement(3431212..3431424)       PHAGE_Entero_933W_NC_000924: protein MokW; CBL25_017730; phage(gi9632542)            5.12e-41            ShigellaflexneriMLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
3431469..3431651                   PHAGE_Stx2_II_NC_004914: hypothetical protein; CBL25_017735; phage(gi32171073)       7.44e-16            ShigellaflexneriMLTGAFLYLPLVFMPETDSLKHPQSFYLTKISLQTVFVRHSKYPTKPIAFAVFTASIQCT
complement(3431626..3431805)       hypothetical protein; CBL25_017740                                                   N/A                 ShigellaflexneriMKNALQFLFVAFWLFASCMPIIFTARYMEKIDVLILMFGHINALFLGVFMAVMCIEYWR
complement(3432018..3432434)       PHAGE_Escher_Av_05_NC_025830: hypothetical protein; CBL25_017745; phage(gi730985110)     4.05e-32            ShigellaflexneriMTELTKEQLIEEAKLKIAITKCHPNSGMARVEGELFKIARASLEAEPIAWRYRYVKKGVMDSQGELWVGDWKYVPKKEDCNDRPNYEIQALFTAPPVPVTSEELVKAVHFYEQLKRENPPASGNQINGLTMSVKRPAN
3432461..3432601                   DUF4224 domain-containing protein; CBL25_017750                                      N/A                 ShigellaflexneriHQRKWLMENGLPFYTNRSGKPIVSRDLFTCNKTLPPREVEPNFGAI
3432601..3433623                   PHAGE_Salmon_ST64B_NC_004313: Integrase protein; CBL25_017755; phage(gi23505472)     2.10e-128           ShigellaflexneriMGRRRKNPEHEKLPPNVYPNKYSVWKPTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK
complement(3433676..3433765)       tRNA                                                                                 N/A                 GGAGAGATGCCGGAGCGGCTGAACGGACCGGTCTCGAAAACCGGAGTGGGGGCAACTCCACCGGGGGTTCAAATCCCCCTCTCTCCGCCA
3433859..3434656                   DgsA anti-repressor MtfA; CBL25_017765                                               N/A                 ShigellaflexneriMIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVALAERFLQQKRLVPLQGFELNSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFISLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH
3434690..3434702                   attR                                                                                 N/A                 ATGGCTTATGAAA
3434733..3434749                   attL                                                                                 N/A                 TAATATGCGCCCCGTTC
3434757..3434832                   tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
3434994..3436256                   PROPHAGE_Escher_CFT073: prophage P4 integrase; CBL25_017775; phage(gi26248270)       0.0                 ShigellaflexneriISLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNMALAHKSNRKWSQNTADRLLASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNKFIP
complement(3436363..3437529)       PHAGE_Shigel_SfII_NC_021857: hypothetical protein; CBL25_017780; phage(gi526244689)     6.65e-57            ShigellaflexneriMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKRLPRSCQTPVNSSRSGNSERIILWSHSAMCSGFIAAATDTGKTVLKTRRQTGCITQSGTATWHQPRFGRSKKHRHNGNPERLPDGTLACWQAHERAGAGQLSAADSPVTWWSTCCYPLPRQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERLFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3446293..3446309                   attR                                                                                 N/A                 TAATATGCGCCCCGTTC

#### region 12 ####
complement(3449797..3450952)       PROPHAGE_Escher_CFT073: transposase insF; CBL25_017860; phage(gi26249410)            1.45e-11            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTRSNNGDNNFPLKRCVRYLVYPGRLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGMSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGRAHDKELTGKALFMALRSQRPPAGLIHHSDRGSQILRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
3450968..3451189                   hypothetical protein; CBL25_017865                                                   N/A                 ShigellaflexneriMPFYFRKECPLNSGYLSQSRMGELLLHPGISTTEASMNNNNTLYVGLDVHKESITVAYEPPRESWRLNFLRKR
3451195..3451930                   PHAGE_Stx2_c_1717_NC_011357: putative transposase; CBL25_017870; phage(gi209447180)     2.77e-64            ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGADRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRKRYSAYTMKITRYTVSLASVVTGRYQSGQMHCGTSHGGYGTCRCSPGKGPYDHQPESRCRRRPRKPSVRGRTTPAVGGFYLT
complement(3451923..3452294)       hypothetical protein; CBL25_017875                                                   N/A                 ShigellaflexneriMSKHLRPAVLTYHCQFLLHGLSDHVGRGDVFNPQRRINGFMFFSLSVLNLEDHLGLVISPQSPLSAGYITLRACRRSLPLRFSTVTPGGIVGFLIVSYRFNIPDRLAVHLSIHARPELRAHHK
3452603..3454111                   PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; CBL25_017880; phage(gi100001)     2.19e-48            ShigellaflexneriMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECRGVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASLTALLSGNYSESKVDMAEQLNRKLKGWAMFYQFVDFKAKVFSYIDRVVFWKLAHWLARKYRTGIASLMRWWCKSPKPGQSKTWVLFGKTNHGKLSGEILYRLVGQGKKLFRWRLPEGNPYLRTETRNTYTSRFTEVAMAFASI
3454201..3454674                   PROPHAGE_Escher_CFT073: transposase IS629; CBL25_017885; phage(gi26250986)           6.73e-110           ShigellaflexneriLSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(3455052..3455198)       PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_017890; phage(gi209447153)           5.24e-13            ShigellaflexneriLVAGKAGTCRLNGIDPEAYLRHILSILPEWPSNRVDELLPWNVVLTNK
3455252..3455434                   ethanolamine utilization protein; CBL25_017895                                       N/A                 ShigellaflexneriMNHPVIGVVTKADLASMEQISLVKSWLREAGAHNVLVTSAVNNNGVTELFALLHTEEGCC
complement(3455535..3455864)       DUF496 family protein; CBL25_017900                                                  N/A                 ShigellaflexneriMETTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGEMKNGEAK
complement(3456036..3456335)       hypothetical protein; CBL25_017905                                                   N/A                 ShigellaflexneriMGRLRHFVLLNAQKLCDTQHMMQQILLSLVHALYEGNPQPVFANTEKLNDAVEELRQLLDNHHDLKVVETPIYGYVWLNMETAHQLELLSNLICRALRK
3456405..3457049                   PHAGE_Stx2_c_1717_NC_011357: truncated transposase; CBL25_017910; phage(gi209447151)     9.67e-08            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRR
3457075..3457245                   PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_017915; phage(gi209447152)           1.18e-26            ShigellaflexneriMITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKIL
complement(3457290..3458498)       PROPHAGE_Escher_CFT073: transposase IS629; CBL25_017920; phage(gi26250986)           3.69e-161           ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEFDRLWKKCHCWISCVSSTGSDRYAANCILPRQRITTVSNSDIIRINAVPVRSAMTGRRDTARIRKSQGIRCKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLMWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
3458548..3458710                   IS66 family insertion sequence hypothetical protein; CBL25_017925                    N/A                 ShigellaflexneriVQWADRDGLCLFAKRLAGDPGRESTPDASSVIHATGGDRVATSQTDRTAWHPDIA
3458730..3460330                   PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_017930; phage(gi209447153)           3.05e-31            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPLNRSNAVMPVQGYLHGSWSANIWNISLYIASQKYTRDRAWSAVIPWCAGYQKWQTNSVLCIRMTMFWRQERCTQMTLRKYWPRGTERRKRVVCGYTSGMIVMRVHPCRQPSGSRIRQIAKENIRSSTWQSIRAYCRLMPMQVITYCTKRAGRKPGAWPTPAEKPMTRMCAVRQKLRKRSDGQSYTTKRRYVAVRQRNGLQSEKPEASSCNRCTTGYSCRGKRCRNMRRWRRRSTISITGMRTSSVVTAGWKTTTSVKTRYDRWRLEEKIISFSAQTREEKVRRSSTVCWSPANRTKWSRRTGCAKSRSSMTGRRTKCINCCPGTSRLNAA
3460364..3460750                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CBL25_017935; phage(gi41057343)     2.29e-91            ShigellaflexneriSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
3460756..3460821                   PHAGE_Entero_Sf101_NC_027398: hypothetical protein; CBL25_017940; phage(gi849122281)     8.79e-09            ShigellaflexneriSYLREAVEGWILNGGVNQKCS
complement(3460802..3461155)       PHAGE_Stx2_c_1717_NC_011357: integrase; CBL25_017945; phage(gi209447127)             5.17e-80            ShigellaflexneriYEQIKPFLEKAMTMYNDVLFPGEDINKPISIAAANRFVNRIRGGMDLGYWRTHDFRRTLVTRLSEMNVEPHVTERMLGHELGGIMSVYNKHDWIEAQRKAYELHADKLFWHIRSISD
complement(3461185..3461601)       PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_017950; phage(gi209447153)           1.32e-50            ShigellaflexneriERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDGWVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLREVIEKLNDWPSNQVHELLPWNFSSVK
3461598..3461676                   LysR family transcriptional regulator; CBL25_017955                                  N/A                 ShigellaflexneriVLRCTGNSGHYHLFFFAAIYFSLA
complement(3461645..3462797)       PROPHAGE_Xantho_33913: ISxac3 transposase; CBL25_017960; phage(gi21231087)           3.59e-08            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKATAYFAQESLKIRVNRTMATTISHSDVSGIWCIRGRLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGMSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGGMVVPRWHQRCLYVRNCRLRHGRAHDKRADRSPVYGAQEPAPTCRANPPLSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKISSDGCLA
complement(3462862..3463149)       PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_017965; phage(gi209447153)           9.92e-37            ShigellaflexneriSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADAYAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGSPAEE
complement(3463162..3464388)       PROPHAGE_Escher_MG1655: IS2 transposase TnpB; CBL25_017970; phage(gi16132094)        2.29e-114           ShigellaflexneriMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGYRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(3464478..3465381)       PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_017975; phage(gi209447153)           4.30e-07            ShigellaflexneriMNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPDENLHENRCRQNFPGDTSPSACNQLPGLWRCSERNGGNNLRATGYHYRLSYRNHTSQTGLPVCHRSGTTSSTDRTRLCQCRVTCTDPGQQIYGTYPFISPVRNIRATGRGAEPYHGALGIRNGRQTPSSVYSAELCSGGRKGARRHSGESTGPGERKDENGSSVGIRQGSCGFIPA
complement(3465378..3465640)       PHAGE_Stx2_c_1717_NC_011357: transposase; CBL25_017980; phage(gi209447152)           3.53e-24            ShigellaflexneriVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFAKRLAGDPGRKVHLTPAQLSMLLEGIAWQHPKRTERPGIRIPVIKQGNGA
complement(3465618..3466392)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; CBL25_017985; phage(gi209447151)     4.70e-11            ShigellaflexneriMNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVRWHLTTPEPTRPVTNPFWRNKHDERPEGLRKRPRCELHLKSGVVKLFDPLTPELLRALIREMKGVSDDNAADRYQNLDHRWHHRYALWLQWRLRRCRTRKMA
complement(3466471..3467310)       PHAGE_Stx2_c_1717_NC_011357: integrase; CBL25_017990; phage(gi209447127)             0.0                 ShigellaflexneriMAISDTKLRTIYGKPYSGPQEVADADGLSVRISPKGVIQFQYRYRWHGKPNRLGLGRYPSLSLKDARQITADLRKLYFSGTDPRTYFEEKVENSMTVAQCLDYWFDNYVSTTLREKTQALYRSTVMKRMHDAFPNRPASSITVKQWVDLLTEEEKDNPRRARQVLSQLRSAISWCMRRQLIDSCAIMSIQPRDFGSRAEVGDRVLSYHELAKIWLAIERSRASTSNKLLHQMLMLWGARLSELRLATKTEFDLLDNVWTVPKEHSKMGNVIRRPIFEQM

#### region 13 ####
3571287..3571298                   attL                                                                                 N/A                 TGGAGTCATTAC
complement(3585648..3586345)       PHAGE_Entero_P1_NC_005856: InsA; CBL25_018550; phage(gi46401643)                     5.72e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRSSGIITNTISAA
3586436..3586897                   DUF1307 domain-containing protein; CBL25_018555                                      N/A                 ShigellaflexneriMKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKSTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK
complement(3586939..3587103)       DUF1456 family protein; CBL25_018560                                                 N/A                 ShigellaflexneriDILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS
complement(3587119..3587816)       PHAGE_Entero_P1_NC_005856: InsA; CBL25_018565; phage(gi46401643)                     3.72e-56            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYIASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSGNALWPHWSVFACCRPLRSWYGRMAGRCMNHARESCTLSASVTLSALSDIIIDNIWQGWYGSHCRSQNRWSCMTRSSGIITNTISAA
complement(3587862..3588185)       DUF1456 family protein; CBL25_018570                                                 N/A                 ShigellaflexneriMISNDILRSVRYILKANNNDLVRILALDNVEATAEQIAVWLRKEDEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTDDILVML
complement(3588232..3588951)       two-component system response regulator BtsR; CBL25_018575                           N/A                 ShigellaflexneriMIKVLIVDDEPLARENLRIFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
complement(3588948..3590633)       PHAGE_Entero_YYZ_2008_NC_011356: putative 2-component sensor protein YehU; CBL25_018580; phage(gi209427798)     0.0                 ShigellaflexneriMYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA
3590859..3592179                   PROPHAGE_Escher_MG1655: IS4 transposase; CBL25_018585; phage(gi16132099)             5.51e-67            ShigellaflexneriMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRTDIMLPGNRPFVAPVPLFRPASAREVRLSAACSRKQRSSGITPRRIRTGAAPYWPSMVCSGAHRIHQRTMQPSPPDTCREPGALPAGQNGLPDGTDQPSADGCSLRHDEEQRKACATYRTNRRHSDVNGRLLLTGTVKWLERRENTATGYLSEGAQYEELRKLGKGDHLVKLKTSPQARKSGRDWEMKQPACPRAKEKSAICRRRTPCASRRRNGGSVQSSLGNRTGIQGDKTDDATEQADAEKKAGACGARAVGCLTGLSGEISDDNGGTSERLLAESTEFLRIMRNGDENADDIAGRFTGTYTGADARSCKYGTTCEITDEKGKGLPESGKGEALEIPHSPEKEPVSCLA
3592284..3592349                   MerR family DNA-binding transcriptional regulator; CBL25_018590                      N/A                 ShigellaflexneriMALYTIGEVALLCDINPVTLRA
3592577..3592825                   PHAGE_Entero_cdtI_NC_009514: hypothetical protein; CBL25_018595; phage(gi148609412)     2.53e-53            ShigellaflexneriMRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(3592941..3593210)       PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; CBL25_018600; phage(gi428782810)     1.72e-25            ShigellaflexneriMLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
3593267..3593934                   class I SAM-dependent methyltransferase; CBL25_018605                                N/A                 ShigellaflexneriMVKLMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLHGNISTKAVYAMRRRPLMMELYTEPQFLAMELCTIASVKNCAFTIRKASFQTQKIPKKAHIYSQSISRMLKPRFKVLCFPLQGKNAG
3594250..3595893                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; CBL25_018610; phage(gi169257209)     2.91e-05            ShigellaflexneriMLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(3595894..3596073)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; CBL25_018615; phage(gi849255281)     2.65e-06            ShigellaflexneriMNKPQLAESQKTALLTEAESVIRQPGRAVRLNRETDESGEARGRASVFPESVRSVVYAM
complement(3596073..3596697)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; CBL25_018620; phage(gi18249921)     1.46e-05            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSPLHSHRCRTDGSANLAGTAKWQMGDSPIHCDTRNAGSGQRGQTSGNSMAHRTGGEAVHVMERSYLECWPRLTGPPVPGSHAGKICHSTNTYGVERCRSAGETVDAGTGRTGGSNGAGAGRSQRDLSPSANERGAERSGFGFNSGVRVA
complement(3596648..3598063)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; CBL25_018625; phage(gi18249920)     9.51e-116           ShigellaflexneriMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMAGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPGTPTGTYIVSPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
complement(3598087..3598628)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; CBL25_018630; phage(gi849255280)     4.45e-08            ShigellaflexneriMLHLKNITAGNPKTAEQYQMTKRYSVTGFSEDGKTGMKSRISPATQKLTPEMVAWCGSVRMQASSHAMPALSKFRILPLTDGLPRRVTGFTAMMNLSLTTDSKRKMSVMPFWLRSVPGQGNGKKTCCWGSATKIKKSKPVVFTRNRCRRWISAPSLINPHTTPLNGPPLRKVLPGA
complement(3598631..3599044)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; CBL25_018635; phage(gi849255282)     2.04e-28            ShigellaflexneriMAALPKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
3599086..3599783                   PHAGE_Entero_P1_NC_005856: InsA; CBL25_018640; phage(gi46401643)                     6.16e-57            ShigellaflexneriVASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSRPRAYNRAVMLSALKWTNIGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAVRCMNHARESCTLSASVTLSALSDIIIDNIWQGWDGSHCRSQNRWSCMTRPSGIITNTISAA
3599786..3599797                   attR                                                                                 N/A                 TGGAGTCATTAC
3599798..3600154                   PHAGE_Entero_BP_4795_NC_004813: putative integrase; CBL25_018645; phage(gi157165986)     8.23e-80            ShigellaflexneriRSTVHKCTFVFSPQVIKQRQFSGPHYKVDSIRESWTSILKRAGLRHRKSYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNRRLSESVPCMPHKKAG
3600175..3600456                   MerR family transcriptional regulator; CBL25_018650                                  N/A                 ShigellaflexneriMGLPLIPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKILLSNENVDVQNVWRDQQETLLTYLQSVNRPGNPGD
3600482..3601690                   PROPHAGE_Escher_CFT073: transposase IS629; CBL25_018655; phage(gi26250986)           5.68e-161           ShigellaflexneriMTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSSTGRTAMQRTAYCPVNVLPLSATATSSGMQCPCAARLAEERDTARIRKSQGIRCKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTIGRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKSEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
3601687..3602184                   MerR family transcriptional regulator; CBL25_018660                                  N/A                 ShigellaflexneriMSSQIKHSPGNPGRFSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDIFPLGI
3602244..3602351                   protein YohO; CBL25_018665                                                           N/A                 ShigellaflexneriMRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG
complement(3602332..3603063)       ABC transporter permease; CBL25_018670                                               N/A                 ShigellaflexneriMKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQESFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAVLAIAVPVIGFGLQPAIIALILYGVLPILQVTLAGLGAIDPSVTEVAKGMGMSRGQRLRKVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIADRLFERLVQALSQHAK
complement(3603068..3603994)       PHAGE_Bacill_G_NC_023719: gp245; CBL25_018675; phage(gi593777701)                    1.51e-29            ShigellaflexneriMIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSELGVHLLSLRSVADYVRREERAEGEALAEEMTLRDALSLFVARGCEVLPVVNTQGQPCGTLHFQDLLVEA

#### region 14 ####
complement(4047383..4047937)       PHAGE_Escher_pro483_NC_028943: DNA invertase; CBL25_020755; phage(gi971758535)       2.47e-113           ShigellaflexneriMLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLKTLSAGDTLVVWKLDRLGRSMRHLVVLVEALRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLEAARAQGRIGGRRPKLSPEWAQAGRLIASGVSRQKVAIIYDVGESTLYKRFPARVI
4048439..4049050                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; CBL25_020760; phage(gi169257209)     2.29e-05            ShigellaflexneriMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLLHIAID
4049296..4050249                   invasion protein; CBL25_020765                                                       N/A                 ShigellaflexneriMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFTVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(4050426..4051050)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; CBL25_020770; phage(gi18249921)     1.46e-05            ShigellaflexneriMHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFRQGPGSPLHSHRCRTDGSANLAGTAKWQMGDSPIHCDTRNAGSGQRGQTSGNSMAHRTGGEAVHVMERSYLECWPRLTGPPVPGSHAGKICHSTNTYGVERCRSAGETVDAGTGRTGGSNGAGAGRSQRDLSPSANERGAERSGFGFNSGVRVA
complement(4051001..4052264)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; CBL25_020775; phage(gi18249920)     1.83e-94            ShigellaflexneriMSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFRPGKECAAVNIPLLAPTASSYPTHGLKGCSASGGLMHALRQQNRGTEPNPLLFTALTAPFITPATATGPYPDLAGKIPQKILFTESWRALSATDGETLTLAGLLLRTREKLTVIKSSDLSGGSHTEAHDWDRWGFQCPVLPPERIYPHNFHYGMFRAFITGVILRPVRGAGCTCLWRNARAFYSHIVA
complement(4052288..4052833)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; CBL25_020780; phage(gi18249919)     9.84e-95            ShigellaflexneriMLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
complement(4052836..4053309)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; CBL25_020785; phage(gi849255282)     1.84e-28            ShigellaflexneriMAIAFKNIQAGTARKFTLSSANNSTKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
4053373..4054641                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; CBL25_020790; phage(gi24114950)     2.00e-114           ShigellaflexneriVIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKSGRTRPYCQGWEASAVVSGCRVRSCTSFSDEPMTGWMAAAVVTLMIRMCFSVYTMLSESCPRMVIVGYGRCFADRQNLMVCLRSMPNVFTGSCARMRCCLSENLLYRHRNGHIQAEWPKKAISDGALTGSSSAVITERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(4054653..4055552)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; CBL25_020795; phage(gi18249918)     2.84e-82            ShigellaflexneriMKASDKPRQLAVPFASTGDKNRIPDKATQQTRESGNAAYDSGFPPVTMTAVSAGGIPPHGKDFNGLMYDITAAIRFAQAGGLYTYNAGFAGAIGGYAKGAILAGVATTAVWLNTTDDNLTDPEGSDSAGWVNLLEDPKRIFLRQKNNLSDLQNKGTARDNLQVYSKEQSDQRYVHREGDKITGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEGQGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGNSIVLGDNDTGFKQNGDGILDVYANSQRVFR
complement(4055539..4056144)       PHAGE_Aeromo_vB_AsaM_56_NC_019527: hypothetical protein; CBL25_020800; phage(gi422937564)     5.56e-40            ShigellaflexneriMQNVAATVLAQYAASPRLNALINSFNAALSPDSFISDFYGLIWNIDTAEKYGLDVWGKIVGVSRWLTVKDDFNYLGFSESRMDTPVMDDPCPFNQAPFYNGKSDTRTVDLSDAVYRRLILMKAMSNITDCSVPDINLMLRFMFGKKRRAYVLNNGGLRMSYVFESALSLAELAIIQSSGALPSPPGVYVSVVLKESRNEGQ
complement(4056146..4056832)       PHAGE_Acinet_phiAC_1_NC_028995: putative baseplate J-like protein; CBL25_020805; phage(gi971763836)     1.74e-29            ShigellaflexneriMPGSDEETRADFENRRRNSVARNARNILEAIRGEILSTVENVVDVYVTHNPKKTEQKAGVSQYPLTPGSLYVGVYGGSPADIAAAIWRKAPPGIDMNGNTTFTVADKEYDPPYPEYVISWQTLKPVSLHVSVTLKKSDYLPSDITRQVQQSVLDAFNGTDGGLRARVASVVSAGRYYAGIYKTDPEHIDILGLTVSRDGSSWTTAVTFGIDEIPVLDVSDISVKLQEA
4056912..4058064                   PROPHAGE_Xantho_33913: ISxac3 transposase; CBL25_020810; phage(gi21231087)           9.45e-07            ShigellaflexneriMSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKSNSVFCTGVAENTRSNNGDNNFPLKRCVRYLVYPGRLLQLGTATLRQKTKAAKTGDGGTYPHSRNIWNPAAPDGAGREWHHRWSPTGTSSGAEATLAETQVQSDYEPEPQSASCAKSAEPDVRSYSTKSGLGGGPDVCCHTGRMVVPRWRQRCLYVRNCRLRHGRAHDERVDGSPVYGAQEPAPTCRANPPLRSRFTVLRIRLPGHTGAVWSENINVARLLRQRSDGKLLGNAEKEPEPLSFPGSHLSNTGIHDFLQSSASSLSSGEYLPGSLQGKTSSDGCLA
