gi|00000000|ref|CP039253.1|  Rhodococcus sp. PAMC28707 chromosome, complete genome. 4727363, gc%: 62.07%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(579684..581474)         PHAGE_Flavob_6H_NC_021867: cytochrome c oxidase subunit I; E5720_02670; phage(gi526120183)     1.21e-12            RhodococcusspPAMC28707MTALAPRPTPVVEAVRPFPPRMGPKGSFIHKAVTTTDPKVLGIMYIVTSIAFFLVGGLMALLMRAELAVPGMQFLSNEQYNQLFTMHGTIMLLLYATPIVFGFANYILPLQIGAPDVAFPRLNAFSYWLYLFGALVASAGFITPGGAADFGWTAYTPLSSALHSPGVGADLWIMGLAIAGLGTILGAVNMITTVICLRAPGMTMFRMPIFTWNILVTSILILLAFPLLTAALLGLAADRHLGAHLFDPATGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEVFPVFSRKPMFGYTTLIYATIAIAALSIAVWAHHMYATGAVLLPFFSFMTFLIAVPTGVKIFNWVGTMWRGQVTLETPMLFAIGFLITFLFGGLSGVLLASPPIDFHVTDTYFVVAHFHYVVFGTVVFATFSGIYFWFPKMTGRMMDETLGKWHFWLTFLGFHGTFLVQHWLGNEGMPRRYADYLASDGFTTLNIISTIGAFVLGASTLPFVWNVFKSYRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHMVDRLRAEAHVGPGNHGGHTTEVLEQARRAPLATSDHEHSGDTDPK
581734..582798                     iron-siderophore ABC transporter substrate-binding protein; E5720_02675              N/A                 RhodococcusspPAMC28707MSTVTSTSRAGLILAIGVALFTAGCSTPPSSSDDASTIVRSTTNIAGAGVVGNDRKTAGLCPEAAPLDPTGIEGSVRPVGHSEGISNVPADPMRIVVLDAASLDATCAVGVWERVVGAATLDPDFRGDGDQELYLGPGIARVPSVGTLGAPDVDAVATLAPDLIIGSDSLGRDTYAALSDIAPTVFTSSDDGWKGTFLQSAAALGRGRTGFDELARFSADAQQAGRDIDAAQTQASVVRFLPDSMVTDSTTSFAGQVLAEIGVQRPPAQRDGEVTVAPDDLLAAEGDIVYVRFDGDEGESFGTEVLRSDPWLELGSVKDGRVFAVDDTVWSGSGIVAARAILADVQNSLNAYAS
582800..583273                     PHAGE_Bacill_AR9_NC_031039: hypothetical protein; E5720_02680; phage(gi100073)       7.58e-07            RhodococcusspPAMC28707MPVPEFVLSLRRRVGTAPLWLSGVSAVVLDENDRILLTRRRDNGLWAVVSGILEPGEEPGPAALREIAEETGLDAELIRLTSVDVTGPITYPNGDQAQYLDLTFLARRTGGDAHVADDENLAVEWFAPDALPETLLETSRLRIDKALDDSVEAWFRN
complement(583337..584299)         PHAGE_Mycoba_PegLeg_NC_021299: NrdG; E5720_02685; phage(gi508177953)                 0.0                 RhodococcusspPAMC28707MKLIDRVSAINWNRVQDDKDSEVWERLTSNFWLPEKVPVSNDIPSWETLNAVEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAITQHEEAVYTNIAFMESVHAKSYSSIFSTLSSTRDIDDAFRWSEENVNLQRKAEIVLKFYHGDDPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLEKVTEAEREELKNYTFELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALNNLGYEGLFPKDETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDDDWDF
complement(584451..586616)         PHAGE_Lactoc_phiL47_NC_023574: ribonucleotide-diphosphate reductase subunit alpha; E5720_02690; phage(gi589890883)     0.0                 RhodococcusspPAMC28707MAPTITDTAPAQTTVRADGDLDYHALNAMLNLYGPNGEIQFEKDREAANQYFLQHVNQNTVFFHDLDEKLDYLVEENYYEAEVLDQYSREFVKFLINHAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLGAGDEALAADLVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREAGAPIKRIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDVYKFLDTKRENADEKIRIKTLSLGIVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADINVSETYYEMVDDKRIRKTKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPVKGKITHSNLCSEILQVSTPSTFNDDLSYSHVGKDISCNLGSLNIAKTMDSPDFGKTIAVAIRGLTAVSDQTHIFSVPSIEQGNNDSHAIGLGQMNLHGYLARERIHYGSTEGIDFTNIYFYTVVFHAIQASNQLSIARGEYFKGFPDSKYASGEFFDKYTDEVWEPATSRVAALFADAGVHIPTQADWSALKASVQEHGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLNNDNLEFYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTASTRDINKAQIYAWRKGIKTLYYIRLRQLALEGTEVDGCVSCML
complement(586670..587098)         PHAGE_Bacill_SPG24_NC_030903: hypothetical protein; E5720_02695; phage(gi100023)     7.02e-13            RhodococcusspPAMC28707MVYFSSASENTHRFVTKLDLLSSRIPIHRPEEFRVDQPYVLIVPTYGGGTTFAGRDTNYVPKQVIKFLNDKHNRSLIRAVIAAGNTNFGDSFCFAGDVISQKCAVPYLYRFELMGTPEDVVRVRDGLGDFWERESRRAAHTY
complement(587173..587406)         PHAGE_Mycoba_Adler_NC_023591: glutaredoxin-like protein NrdH; E5720_02700; phage(gi589892251)     4.50e-32            RhodococcusspPAMC28707MSVTVYTKPACVQCNATYRALDKEGIEYSIIDISQDTEARDYIMALGYLQAPVVVAGDTHWSGFRPDRIKSLTASVA
complement(587922..588488)         NAD(P)H-dependent oxidoreductase; E5720_02705                                        N/A                 RhodococcusspPAMC28707MSQAHVLVLVGSLRVDSVNKQIAETAAALVPEGADALVYEGLADVPFYNEDLDVEGSVPAAALSLRAAAEGATAFLLVTPEYNGTIPAVLKNAIDWLSRPYGVGAVQGKPVAVISASPSGNGAKWAHDDTRKSVGIAGGKVLEDVVLTIGGTMDKFGSAHPRENAEVSAQISAVVAELVKASHELVDA
588594..589217                     TetR/AcrR family transcriptional regulator; E5720_02710                              N/A                 RhodococcusspPAMC28707MTDFMLPIAGEETERCDAARNRRLLLEAATELVATVGADAVTMDALAARAGVGKGTVFRRFGSRSGLMQALVDHTEKELQHGFLFGPPPLGPGADPIDRLVAFGRARLNLVEVQGEVMRAAENSPELRYSAPAHRVNYTHVLNLLRTARVEGDLELLAYGLLTPLEATLVLHQFRDLGMSKQRLADGWEDLVRRATRQESSSATAAR
589318..590163                     PHAGE_Bacill_G_NC_023719: gp283; E5720_02715; phage(gi593777739)                     1.68e-109           RhodococcusspPAMC28707MALIRSELRTRIQRELAVQSTIDPASEITRRVDFLKNYLRSTPATGFVLGISGGQDSTLTGKLAQRAVTELRSEGAEAGFLAVRLPYGVQADEDDASIALSFIDPDRTVTVNIKASADAAAASVADALGNDAVRDFVRGNIKARERMVAQYALAGELGYVVVGTDHAAEAITGFFTKFGDGGVDITPLTGLTKRQGAELLRELGAPESTWKKVPTADLEDDRPALPDEEALGVTYAQIDDYLEGKDVTEEVAAKLERMFLNSRHKRAVPVTPFDDWWTTEN

#### region 2 ####
2277920..2278921                   PHAGE_Natria_PhiCh1_NC_004084: putative plasmid partitioning protein Soj; E5720_10290; phage(gi22091150)     3.01e-32            RhodococcusspPAMC28707MSGGFDPAVSRETSTANNDGQPASKPRGGSGFDAFSGISANDTPIGAAAQRASQVLHPKSVTLPKLAHRRMLTIANQKGGVGKTTTAVNLAAALALQGLTVLVVDLDPQGNASTALGVEHHSGVPSSYEVLIGEVTAREAIQQSPHSERLFCIPATIDLAGAEIELVSMVAREGRLKTALMDLADIDADFVLIDCPPSLGLLTVNAMVAATEVLIPIQCEYYALEGVGQLLRNIELVQAHLNPQLHVSTVILTMYDGRTKLADQVAEEVRKHFGDAVLRAVIPRSVKVSEAPGYGMTVLDYDPGSRGAMSYLDAGRELAARSSFATTDGTQEQ
2278926..2279960                   PHAGE_Burkho_ST79_NC_021343: ParB-like partition protein; E5720_10295; phage(gi509141621)     2.30e-07            RhodococcusspPAMC28707MGQARKGGLGRGLAALIPTGPEAGPRLGSAAADVVIGTAADGKISRNAAEKAAREASAPTPTPPVRSSEEDLSPTGALYREIDPKLIQPNAKQPRSVFDEEALTELVHSIREFGLMQPIVVRPIADGRYELVMGERRWRASQEAGLESIPAIVRETNDDAMLRDALLENIHRVQLNPLEEAAAYQQLLEEFDVTHEELAAKIGRSRPVVTNMIRLLKLPIPVQRRVAAGVLSAGHARALLSLDAGSDAQESLAARIIAEGLSVRATEEAVTLANRNDNISPNPAPRRKPIQMPGLQDVANRLSDSFDTRVTVSLGKRKGKIVVEFGSVDDLERIVEMMESQKKK
2280182..2280868                   GNAT family N-acetyltransferase; E5720_10300                                         N/A                 RhodococcusspPAMC28707MSTLVTGVTLDSFDQLPKHTRRCRFWVLDPARTRADGESLDLEFENEAWLSMVMLEWGSCGQMLSVGSETVGCALYAPPGAVPRSTTFPTSPVSADAVLLTTLRIESDVDREGHSASLIQAVVADLVNRGVRALEAFGIRRTAEDEVIGPRATMSLTCSDTECMIDADFLEQAGFEVVAPHHRYPRLRLELHRDHGWKEDVESALERLLIAASLTAVEIEHKETVGVR
complement(2280895..2282088)       PHAGE_Bacill_AR9_NC_031039: ss-DNA binding protein; E5720_10305; phage(gi100271)     3.09e-14            RhodococcusspPAMC28707MHRLSHGDSGPAVAEVRSTLVSLGFLVEETDRSSPNDPTHWTPPASDFDESLGGAVRAFQQYRGLLVDGVVGPATYRSLKEASYRLGARTLIYQLSAPLYGDDIATLQTRLQDLGFYSERVDGYFGPKTHEGLSSFQREIGLSPDGICGPATLRSLELLGTRVTGGSPHAISEQELVRAAGPQLTGKRIVIDPDLGGADTGRIVQGMFGRISEAEILWDVASRLEGRMAATGMETFLSRARGTNPSVAERAETSNGFNADLMISLRCASSTSPAANGVASFHFGNSHGSASLIGQILTGYIQREIVARTPLLDCRSHGRTWDLLRLTNMPTVQVDMGYLTNTSDVDVLSDPRSRDIIAEAILISVKRLYLLGQDDQPTGTFTFAELLAEELAAADRS
complement(2282315..2282647)       PHAGE_Dinoro_DFL12phi1_NC_024367: putative host-like protein; E5720_10310; phage(gi658311036)     6.98e-14            RhodococcusspPAMC28707MSDDKKTVTITDASFVDDVLSSEKPVLVDFWATWCGPCKMVAPVLEEIAAEHSDKLTIAKLDIDANPQAARDFKVMSIPTLILFQGGKPIKQIVGAKGKAALLKDLEAVL
complement(2282686..2283675)       PHAGE_Bacill_G_NC_023719: gp344; E5720_10315; phage(gi593777800)                     7.95e-72            RhodococcusspPAMC28707MTTPQVHDLIIVGSGPAGYTAGVYAARAELQPILFEGTQFGGALMTTTDVENFPGFREGIMGPDLMEQMREQAKRFGADIRTEDVEEMDLSGEIKTVSAGGETYQARAVILAMGAAARYLGIPGEEKLLGRGVSACATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTIVHRRSEFRASRIMLERAKANEKIRFLTDTNVLEVLGDTSVTGVALENAITGEKTTLEVTGMFVAIGHDPRNELIKGQVDLDEAGYVKVASPSSTTSLPGVFAAGDLVDHVYQQAITAAGTGCTASIDAERWLAEQGDISSNTLEHADQPVDVVNA
complement(2283816..2284538)       hypothetical protein; E5720_10320                                                    N/A                 RhodococcusspPAMC28707MASHGTEPLPVAPYSADLLADLHAGVLDESVSEKLWPLVRKDPRAMEVISALDALSARLGSLGSDFHSGEPMPPDVAERIDCALMTEQETSFGDRPGRYTHRWTYTGIGIAAAAAIVASLSALLFARPSGPTDPDTVAAPAYPPSLVLDSSALNSTDVRDLLGRQDPTELKDAGNLPECLAANGFDPQAILLAATPVQVDGQSATLLVVPRFPMDGMTVLVVGADCGDGNPQTLVRRDLN
complement(2284628..2285221)       PHAGE_Sinorh_phiM9_NC_028676: DNA-directed RNA polymerase specialized sigma subunit; E5720_10325; phage(gi966199376)     5.05e-11            RhodococcusspPAMC28707MGDLHRDWTVGGLLGGRSDVELLSAHVAGEADAFTLLVHRHHEHLWMTARRTSYTNEDAADALQEALLSAHRTAATFRADAAVRSWLHKIVVNACLDRIRRNRSRPTVSLTNEDDIEPVDGRDQMSAVETSMEVHRALMSLPPEQRSAVVAVDMEGYSVADAARMLGVPTGTIKSRCARGRLKLVIQLEYLRYEGNR
