gi|00000000|ref|CP039254.1|  Rhodococcus sp. PAMC28705 chromosome, complete genome. 4727363, gc%: 62.07%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
771936..772529                     PHAGE_Sinorh_phiM9_NC_028676: DNA-directed RNA polymerase specialized sigma subunit; E5769_03690; phage(gi966199376)     5.05e-11            RhodococcusspPAMC28705MGDLHRDWTVGGLLGGRSDVELLSAHVAGEADAFTLLVHRHHEHLWMTARRTSYTNEDAADALQEALLSAHRTAATFRADAAVRSWLHKIVVNACLDRIRRNRSRPTVSLTNEDDIEPVDGRDQMSAVETSMEVHRALMSLPPEQRSAVVAVDMEGYSVADAARMLGVPTGTIKSRCARGRLKLVIQLEYLRYEGNR
772619..773341                     hypothetical protein; E5769_03695                                                    N/A                 RhodococcusspPAMC28705MASHGTEPLPVAPYSADLLADLHAGVLDESVSEKLWPLVRKDPRAMEVISALDALSARLGSLGSDFHSGEPMPPDVAERIDCALMTEQETSFGDRPGRYTHRWTYTGIGIAAAAAIVASLSALLFARPSGPTDPDTVAAPAYPPSLVLDSSALNSTDVRDLLGRQDPTELKDAGNLPECLAANGFDPQAILLAATPVQVDGQSATLLVVPRFPMDGMTVLVVGADCGDGNPQTLVRRDLN
773482..774471                     PHAGE_Bacill_G_NC_023719: gp344; E5769_03700; phage(gi593777800)                     7.95e-72            RhodococcusspPAMC28705MTTPQVHDLIIVGSGPAGYTAGVYAARAELQPILFEGTQFGGALMTTTDVENFPGFREGIMGPDLMEQMREQAKRFGADIRTEDVEEMDLSGEIKTVSAGGETYQARAVILAMGAAARYLGIPGEEKLLGRGVSACATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTIVHRRSEFRASRIMLERAKANEKIRFLTDTNVLEVLGDTSVTGVALENAITGEKTTLEVTGMFVAIGHDPRNELIKGQVDLDEAGYVKVASPSSTTSLPGVFAAGDLVDHVYQQAITAAGTGCTASIDAERWLAEQGDISSNTLEHADQPVDVVNA
774510..774842                     PHAGE_Dinoro_DFL12phi1_NC_024367: putative host-like protein; E5769_03705; phage(gi658311036)     6.98e-14            RhodococcusspPAMC28705MSDDKKTVTITDASFVDDVLSSEKPVLVDFWATWCGPCKMVAPVLEEIAAEHSDKLTIAKLDIDANPQAARDFKVMSIPTLILFQGGKPIKQIVGAKGKAALLKDLEAVL
775069..776262                     PHAGE_Bacill_AR9_NC_031039: ss-DNA binding protein; E5769_03710; phage(gi100271)     3.09e-14            RhodococcusspPAMC28705MHRLSHGDSGPAVAEVRSTLVSLGFLVEETDRSSPNDPTHWTPPASDFDESLGGAVRAFQQYRGLLVDGVVGPATYRSLKEASYRLGARTLIYQLSAPLYGDDIATLQTRLQDLGFYSERVDGYFGPKTHEGLSSFQREIGLSPDGICGPATLRSLELLGTRVTGGSPHAISEQELVRAAGPQLTGKRIVIDPDLGGADTGRIVQGMFGRISEAEILWDVASRLEGRMAATGMETFLSRARGTNPSVAERAETSNGFNADLMISLRCASSTSPAANGVASFHFGNSHGSASLIGQILTGYIQREIVARTPLLDCRSHGRTWDLLRLTNMPTVQVDMGYLTNTSDVDVLSDPRSRDIIAEAILISVKRLYLLGQDDQPTGTFTFAELLAEELAAADRS
complement(776289..776975)         GNAT family N-acetyltransferase; E5769_03715                                         N/A                 RhodococcusspPAMC28705MSTLVTGVTLDSFDQLPKHTRRCRFWVLDPARTRADGESLDLEFENEAWLSMVMLEWGSCGQMLSVGSETVGCALYAPPGAVPRSTTFPTSPVSADAVLLTTLRIESDVDREGHSASLIQAVVADLVNRGVRALEAFGIRRTAEDEVIGPRATMSLTCSDTECMIDADFLEQAGFEVVAPHHRYPRLRLELHRDHGWKEDVESALERLLIAASLTAVEIEHKETVGVR
complement(777197..778231)         PHAGE_Burkho_ST79_NC_021343: ParB-like partition protein; E5769_03720; phage(gi509141621)     2.30e-07            RhodococcusspPAMC28705MGQARKGGLGRGLAALIPTGPEAGPRLGSAAADVVIGTAADGKISRNAAEKAAREASAPTPTPPVRSSEEDLSPTGALYREIDPKLIQPNAKQPRSVFDEEALTELVHSIREFGLMQPIVVRPIADGRYELVMGERRWRASQEAGLESIPAIVRETNDDAMLRDALLENIHRVQLNPLEEAAAYQQLLEEFDVTHEELAAKIGRSRPVVTNMIRLLKLPIPVQRRVAAGVLSAGHARALLSLDAGSDAQESLAARIIAEGLSVRATEEAVTLANRNDNISPNPAPRRKPIQMPGLQDVANRLSDSFDTRVTVSLGKRKGKIVVEFGSVDDLERIVEMMESQKKK
complement(778236..779237)         PHAGE_Natria_PhiCh1_NC_004084: putative plasmid partitioning protein Soj; E5769_03725; phage(gi22091150)     3.01e-32            RhodococcusspPAMC28705MSGGFDPAVSRETSTANNDGQPASKPRGGSGFDAFSGISANDTPIGAAAQRASQVLHPKSVTLPKLAHRRMLTIANQKGGVGKTTTAVNLAAALALQGLTVLVVDLDPQGNASTALGVEHHSGVPSSYEVLIGEVTAREAIQQSPHSERLFCIPATIDLAGAEIELVSMVAREGRLKTALMDLADIDADFVLIDCPPSLGLLTVNAMVAATEVLIPIQCEYYALEGVGQLLRNIELVQAHLNPQLHVSTVILTMYDGRTKLADQVAEEVRKHFGDAVLRAVIPRSVKVSEAPGYGMTVLDYDPGSRGAMSYLDAGRELAARSSFATTDGTQEQ

#### region 2 ####
complement(2466993..2467838)       PHAGE_Bacill_G_NC_023719: gp283; E5769_11300; phage(gi593777739)                     1.68e-109           RhodococcusspPAMC28705MALIRSELRTRIQRELAVQSTIDPASEITRRVDFLKNYLRSTPATGFVLGISGGQDSTLTGKLAQRAVTELRSEGAEAGFLAVRLPYGVQADEDDASIALSFIDPDRTVTVNIKASADAAAASVADALGNDAVRDFVRGNIKARERMVAQYALAGELGYVVVGTDHAAEAITGFFTKFGDGGVDITPLTGLTKRQGAELLRELGAPESTWKKVPTADLEDDRPALPDEEALGVTYAQIDDYLEGKDVTEEVAAKLERMFLNSRHKRAVPVTPFDDWWTTEN
complement(2467939..2468562)       TetR/AcrR family transcriptional regulator; E5769_11305                              N/A                 RhodococcusspPAMC28705MTDFMLPIAGEETERCDAARNRRLLLEAATELVATVGADAVTMDALAARAGVGKGTVFRRFGSRSGLMQALVDHTEKELQHGFLFGPPPLGPGADPIDRLVAFGRARLNLVEVQGEVMRAAENSPELRYSAPAHRVNYTHVLNLLRTARVEGDLELLAYGLLTPLEATLVLHQFRDLGMSKQRLADGWEDLVRRATRQESSSATAAR
2468668..2469234                   NAD(P)H-dependent oxidoreductase; E5769_11310                                        N/A                 RhodococcusspPAMC28705MSQAHVLVLVGSLRVDSVNKQIAETAAALVPEGADALVYEGLADVPFYNEDLDVEGSVPAAALSLRAAAEGATAFLLVTPEYNGTIPAVLKNAIDWLSRPYGVGAVQGKPVAVISASPSGNGAKWAHDDTRKSVGIAGGKVLEDVVLTIGGTMDKFGSAHPRENAEVSAQISAVVAELVKASHELVDA
2469750..2469983                   PHAGE_Mycoba_Adler_NC_023591: glutaredoxin-like protein NrdH; E5769_11315; phage(gi589892251)     4.50e-32            RhodococcusspPAMC28705MSVTVYTKPACVQCNATYRALDKEGIEYSIIDISQDTEARDYIMALGYLQAPVVVAGDTHWSGFRPDRIKSLTASVA
2470058..2470486                   PHAGE_Bacill_SPG24_NC_030903: hypothetical protein; E5769_11320; phage(gi100023)     7.02e-13            RhodococcusspPAMC28705MVYFSSASENTHRFVTKLDLLSSRIPIHRPEEFRVDQPYVLIVPTYGGGTTFAGRDTNYVPKQVIKFLNDKHNRSLIRAVIAAGNTNFGDSFCFAGDVISQKCAVPYLYRFELMGTPEDVVRVRDGLGDFWERESRRAAHTY
2470540..2472705                   PHAGE_Lactoc_phiL47_NC_023574: ribonucleotide-diphosphate reductase subunit alpha; E5769_11325; phage(gi589890883)     0.0                 RhodococcusspPAMC28705MAPTITDTAPAQTTVRADGDLDYHALNAMLNLYGPNGEIQFEKDREAANQYFLQHVNQNTVFFHDLDEKLDYLVEENYYEAEVLDQYSREFVKFLINHAYSKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVCMVALTLGAGDEALAADLVDEIIAGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLSNIREAGAPIKRIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDVYKFLDTKRENADEKIRIKTLSLGIVIPDITFELAKKNEDMYLFSPYDVERIYGVPFADINVSETYYEMVDDKRIRKTKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPVKGKITHSNLCSEILQVSTPSTFNDDLSYSHVGKDISCNLGSLNIAKTMDSPDFGKTIAVAIRGLTAVSDQTHIFSVPSIEQGNNDSHAIGLGQMNLHGYLARERIHYGSTEGIDFTNIYFYTVVFHAIQASNQLSIARGEYFKGFPDSKYASGEFFDKYTDEVWEPATSRVAALFADAGVHIPTQADWSALKASVQEHGIYNQNLQAVPPTGSISYINNSTSSIHPVAAKIEIRKEGKIGRVYYPAPYLNNDNLEFYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTASTRDINKAQIYAWRKGIKTLYYIRLRQLALEGTEVDGCVSCML
2472857..2473819                   PHAGE_Mycoba_PegLeg_NC_021299: NrdG; E5769_11330; phage(gi508177953)                 0.0                 RhodococcusspPAMC28705MKLIDRVSAINWNRVQDDKDSEVWERLTSNFWLPEKVPVSNDIPSWETLNAVEKQLTMRVFTGLTLLDTIQGTVGAVSLIPDAITQHEEAVYTNIAFMESVHAKSYSSIFSTLSSTRDIDDAFRWSEENVNLQRKAEIVLKFYHGDDPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADLIRLIIRDEAVHGYYIGYKYQRGLEKVTEAEREELKNYTFELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALNNLGYEGLFPKDETDVNPAILSALSPNADENHDFFSGSGSSYVIGKAVNTEDDDWDF
complement(2473883..2474356)       PHAGE_Bacill_AR9_NC_031039: hypothetical protein; E5769_11335; phage(gi100073)       7.58e-07            RhodococcusspPAMC28705MPVPEFVLSLRRRVGTAPLWLSGVSAVVLDENDRILLTRRRDNGLWAVVSGILEPGEEPGPAALREIAEETGLDAELIRLTSVDVTGPITYPNGDQAQYLDLTFLARRTGGDAHVADDENLAVEWFAPDALPETLLETSRLRIDKALDDSVEAWFRN
complement(2474358..2475422)       iron-siderophore ABC transporter substrate-binding protein; E5769_11340              N/A                 RhodococcusspPAMC28705MSTVTSTSRAGLILAIGVALFTAGCSTPPSSSDDASTIVRSTTNIAGAGVVGNDRKTAGLCPEAAPLDPTGIEGSVRPVGHSEGISNVPADPMRIVVLDAASLDATCAVGVWERVVGAATLDPDFRGDGDQELYLGPGIARVPSVGTLGAPDVDAVATLAPDLIIGSDSLGRDTYAALSDIAPTVFTSSDDGWKGTFLQSAAALGRGRTGFDELARFSADAQQAGRDIDAAQTQASVVRFLPDSMVTDSTTSFAGQVLAEIGVQRPPAQRDGEVTVAPDDLLAAEGDIVYVRFDGDEGESFGTEVLRSDPWLELGSVKDGRVFAVDDTVWSGSGIVAARAILADVQNSLNAYAS
2475682..2477472                   PHAGE_Flavob_6H_NC_021867: cytochrome c oxidase subunit I; E5769_11345; phage(gi526120183)     1.21e-12            RhodococcusspPAMC28705MTALAPRPTPVVEAVRPFPPRMGPKGSFIHKAVTTTDPKVLGIMYIVTSIAFFLVGGLMALLMRAELAVPGMQFLSNEQYNQLFTMHGTIMLLLYATPIVFGFANYILPLQIGAPDVAFPRLNAFSYWLYLFGALVASAGFITPGGAADFGWTAYTPLSSALHSPGVGADLWIMGLAIAGLGTILGAVNMITTVICLRAPGMTMFRMPIFTWNILVTSILILLAFPLLTAALLGLAADRHLGAHLFDPATGGVLLWQHLFWFFGHPEVYIIALPFFGIVSEVFPVFSRKPMFGYTTLIYATIAIAALSIAVWAHHMYATGAVLLPFFSFMTFLIAVPTGVKIFNWVGTMWRGQVTLETPMLFAIGFLITFLFGGLSGVLLASPPIDFHVTDTYFVVAHFHYVVFGTVVFATFSGIYFWFPKMTGRMMDETLGKWHFWLTFLGFHGTFLVQHWLGNEGMPRRYADYLASDGFTTLNIISTIGAFVLGASTLPFVWNVFKSYRYGEVVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHMVDRLRAEAHVGPGNHGGHTTEVLEQARRAPLATSDHEHSGDTDPK
