gi|00000000|ref|CP039277.1|  Salmonella enterica subsp. enterica strain 12-0523 chromosome, 4710675, gc%: 52.10%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1878557..1878611                   attL                                                                                 N/A                 TAAGTGATTTTAACGATTAGAATACGTTATTTTTGATTCTAATAGATTCAATTAG
complement(1882192..1882338)       PHAGE_Salmon_RE_2010_NC_019488: DNA invertase; CVJ36_09290; phage(gi418489718)       8.62e-16            SalmonellaentericasubspentericaIGGRRPKLTPEQWAQAGCLIRAGVPRQQVAIIYDVGLPTLYRKFPVLG
complement(1882552..1882834)       PROPHAGE_Escher_MG1655: IS3 transposase A; CVJ36_09295; phage(gi226524700)           7.93e-29            SalmonellaentericasubspentericaMTKPASTTKKPRKQHTPEFRQEALKLAERIGVAAAARELNLYESQLYNWRSKPQNQLSSFTRAGDVRDRPSETSTGRTGGTGHSPEWPRHHA
complement(1882885..1883277)       hydrolase; CVJ36_09300                                                               N/A                 SalmonellaentericasubspentericaMIVKSFALAGLLSSTALTPLFAQEAPKGATASTKQANDALYNQLPFSDNTDFTNAHKGFIAGLPEEVIKGEQGNVIWNPQQYAFIKEGEKSPDTVNPGLWLQSQLINISGLFEVTDGVYQIRNLDFDLTQ
1883686..1884816                   PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; CVJ36_09305; phage(gi100150)     3.02e-20            SalmonellaentericasubspentericaMGQDSDDRRRTSSAGRVWQDHKDMVRQALRVSIPWFTFVNISFALIILFRHILISDFDKSISAQTGILPLIDDIMGSIIVFSFLILLFIYRLPTRFTPLCLVMLLILSLMWSYCSYCFIVWWQLPFAWPLSVILMLTALAALYYHLLALLLFIVPLWLTALLASVQLNQYVNIRFLLVWLTLTAILIYGRFILQRWFDEAWLRYQENRMLIARLDVMAHQDALTGTANRRSMESFLGDALRQTEPFALIMLDVDYFKNYNDHYGHQAGDACLAKVACVVKRSIRTPADLVARYGGEEFVVVLPSSSLNEAALVAQRIQTNLRETALPHAASAVSETVTVSMGITLSTAGDTVTGIIARADEALYRAKQQGRNRWVK
complement(1885103..1885498)       PHAGE_Shigel_Stx_NC_029120: LygF; CVJ36_09310; phage(gi985761265)                    5.54e-22            SalmonellaentericasubspentericaMSRNYTPAQKAEIQKRLTELVRTHGRMTFGELRKITRLTIFTARHYLEKAESCGDLYQAGRSGIFPSEQAFLLWKQKREDARITRFLKTPEGVVSSYDRTRNVICTECRNSVTMQRVLAFYPGHYREAKSA
complement(1885511..1885621)       replication protein; CVJ36_09315                                                     N/A                 SalmonellaentericasubspentericaLPPVRRQLAEPRHPAGPTPAQLMMEEFRRRKAAGRL
1885618..1885982                   PHAGE_Salmon_epsilon15_NC_004775: RecT; CVJ36_09320; phage(gi30387413)               2.95e-20            SalmonellaentericasubspentericaVATTEIRKVPALCDCDTMSFVSAIIQCSQLGLEPGGALGHAYLLPFGNKNEKSGKKTFSLLATGESTLPAVPDRLPAFPRALSVKVTISASSLVWKRSWYTVRVRTKMHRLLMSMPLPATT
1886076..1886288                   PHAGE_Entero_HK022_NC_002166: integrase; CVJ36_09325; phage(gi9634144)               5.16e-19            SalmonellaentericasubspentericaMTKTFVKARKASGVNFSNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLGHPSENTTKRYLDERDDKAYMML
1886505..1886559                   attR                                                                                 N/A                 TAAGTGATTTTAACGATTAGAATACGTTATTTTTGATTCTAATAGATTCAATTAG
1887241..1888041                   hypothetical protein; CVJ36_09330                                                    N/A                 SalmonellaentericasubspentericaMIINVGHVATEKFDTTGVSACNNQQSTSVDLSSCIINAASECTVFVRTIIKKSDSYDAMQIDRLKIDTQEKYDALNLQREHHKKFLQAIKANSFDRAMAERPENPISLSLIYSSIDSIKYNTGNCADMSLILGAIIAKYIPQRLTGIGFSKNSVFDARISTSLMYNSASGGNHVVVFLTFTDSKGISEYILDPWLDARIFKKEESYEIYKNNSSEYINENHCFEAYDKYTAIMNSAEYIDAITKTINLLYRVNLDEIQLTNPFKFI
complement(1888070..1888207)       PHAGE_Entero_P1_NC_005856: Cin; CVJ36_09335; phage(gi46401653)                       1.32e-07            SalmonellaentericasubspentericaMGAAGRLIRAGVPQQVAIIYDVGVSTLYRKFPASNMPLMPFMGK
complement(1888520..1888633)       PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; CVJ36_09340; phage(gi399528790)     2.26e-07            SalmonellaentericasubspentericaIAPVTFTGQGIQWYIKREILSPRYTIRYEDLLRVK
1888685..1888696                   attL                                                                                 N/A                 GTAATGAAAAAA
1888688..1889458                   transporter substrate-binding domain-containing protein; CVJ36_09345                 N/A                 SalmonellaentericasubspentericaMKKVYFMFFILLSLSSIYSAMAKPWQEIKESKELRVGVPGDYAPLAFHNRQNKLIGFDIDMAYSLGKALHLNILFVPSSWSTLSADLAADKFDIAMGGVTETPGRRKQFALSSPVLKNGKIALTQCNRINDFKSLGDIDRKGVRIVVNPGGTNQDYVDKHIRYADVIHERDNDATLQRIRERSADVMFTDLLEGTYYQNKEPGVFCVSTKSILPDTANNKVYMMAKDNQYLLDAVNSWLSDENRIILARKWQINPE
1889478..1889651                   PHAGE_Salmon_RE_2010_NC_019488: tail fiber protein; CVJ36_09350; phage(gi418489717)     3.94e-14            SalmonellaentericasubspentericaSTIADRTELARGESSDDDKASQAKWMAYIRKLKTLDLTGVSDEATFTVIRWSALPQ
1889897..1890082                   hypothetical protein; CVJ36_09355                                                    N/A                 SalmonellaentericasubspentericaMNKFNSVLLALVFAISAITFSSSAMATESGNKGFPGISFPWCKIWPAGISIPELPEGKICW
complement(1890173..1890283)       PHAGE_Salmon_SP_004_NC_021774: tail fiber assembly protein; CVJ36_09360; phage(gi526003632)     1.44e-13            SalmonellaentericasubspentericaATDDEIKRLEAWELYSVMVNRVDISAPSWPDKPASL
complement(1890287..1890664)       PHAGE_Pseudo_Lu11_NC_017972: putative tail assembly protein; CVJ36_09365; phage(gi388684690)     1.45e-17            SalmonellaentericasubspentericaMSCFTTPAILEMPGHYLWRVHEPFEFYLSDDNSDVISVPAGFVTDLATVPRIFWSVMPPDGKYAKAAIIHDYLYDNAPRTKKEADLIFLDGMTVPGVPKWKRIVMYLAVRWFGRGMYGKERKYCE
complement(1890675..1891271)       PHAGE_Salmon_RE_2010_NC_019488: tail fiber assembly protein; CVJ36_09370; phage(gi418489714)     6.16e-27            SalmonellaentericasubspentericaMAPPDIPASHIAVFDSETETWSLNEDHRGETVCDTQTGNPIYISKPGPLPENTTTQAPTSPIDKFENGQWVADLATVLGQKYAEINAWRNAQENGNYPFTLNDHHWGCGKASQDRLSPVTAVAKQGALPPGFFWTDADNIDVPMSADELIKLEAAMQQNMVLVGFKIHERQRQMKDEVNSLTNAQAVLDYVVGWPENR
complement(1891258..1891614)       hypothetical protein; CVJ36_09375                                                    N/A                 SalmonellaentericasubspentericaMSEQISTSFIGNRKPDELLNAVERYFREKAITASVNDQNTGIIAGTGDDPELSSLYLDCSLLPQTQNIQEHYRIVAQVWSAGEGSNVSVMVTGTAGLDIADGSATYQITVKLYRYCPS
1891735..1892561                   integrase; CVJ36_09380                                                               N/A                 SalmonellaentericasubspentericaVLLKRRDLAANTYKIRGNQLATVREKMGKYWQRPRGILLSIRSHGSRKVKTRWRGRGLYYLTFFVRQLWKGEQRIRWKQPGYQRLRRPGNACNWKRITPHERQQSICLHGSLSRWIRSLLVNVGRISINLVMILTTAYTLRLKPEKPFPSPHFRQRGYVWERSIAAGWAELISSVQESGKIAQPGIFTRMGQRNLKPEKFQALNLVITHRHFTRSVAWLVGCTKTNAARSSLKNYWATPQRTPRNSISMNAIIKLTCSGA
complement(1892935..1893288)       PHAGE_Salmon_SEN1_NC_029003: hypothetical protein; CVJ36_09385; phage(gi971764937)     9.60e-12            SalmonellaentericasubspentericaMKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLAPFIERAQKLCDPSNS
complement(1893305..1894180)       copper homeostasis membrane protein CopD; CVJ36_09390                                N/A                 SalmonellaentericasubspentericaMMLTFVWITLRFIHFASLMLVYGCALYGAWLAPAPIRRLMTRRFLHLQRHAAAWSVISAAFMLAIQGGLMGGGWPDVFSVSVWGAVLQTRFGAVWIWQIILALVTLVVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAAAWFGGLLPVVYCMRMAQGRWRQHAISAMMRFSRYGHFFVAGVLLTGIGNTLFITGFTAIWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGGIVLAIVSLFATLEPF
complement(1894181..1894555)       CopC domain-containing protein YobA; CVJ36_09395                                     N/A                 SalmonellaentericasubspentericaMASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTASPQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYTVDWHVVSVDGHKTKGKYTFSVK
1894693..1894923                   PHAGE_Pectob_ZF40_NC_019522: putative DNA polymerase; CVJ36_09400; phage(gi422936677)     1.42e-22            SalmonellaentericasubspentericaMKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEVVEREQPEHLRAWFRERLIAHRLASVSLSRLPYEPKVK
1895030..1895686                   carbon-nitrogen hydrolase family protein; CVJ36_09405                                N/A                 SalmonellaentericasubspentericaMSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPSLSLLGCDERNKSLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPWLTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSRLQRFSHKYALAVLMANACGSSALWDESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR
1895710..1896363                   PHAGE_Pseudo_H101_NC_029094: exodeoxyribonuclease X; CVJ36_09410; phage(gi985760125)     6.86e-19            SalmonellaentericasubspentericaMLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPITPQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKLSRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEEMVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYL
1905994..1906005                   attR                                                                                 N/A                 GTAATGAAAAAA
