gi|00000000|ref|CP043405.1|  Streptococcus ratti strain ATCC 31377 chromosome, complete genome. 2096943, gc%: 40.90%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(572477..573115)         PHAGE_Lactob_Ldl1_NC_026609: extracellular transglycosylase; FY406_02690; phage(gi764162103)     7.03e-13            StreptococcusrattiMYSRVKKSKFKKVVKSQFLVLPFFVGFATLFTGESVNTEAHIKKSESVLAQAAVVQPQNTDQTQAQTVAAPENSQPAAEEVSSAQPVTEVAAPDTAAVQNTTNVAYNNTAYASQQAQAANAVSNSNLANGNTAGATGSEAAAQMAAATGVPQSTWEYIIARESNGQVNAANGSGASGLFQTMPGWGSTATVQDQINSAINAYNSQGLSAWGM
complement(573275..574165)         PHAGE_Entero_EFLK1_NC_029026: peptidoglycan-binding LysM; FY406_02695; phage(gi971766958)     1.30e-29            StreptococcusrattiMSLKNILENKSKTVKTSFAGIATAASLILPIAAHAESYTVKSGDTLSEIASAHGTTVKKLAKINKIKDVHLIYIDQVLELDEKTEVPQAAEETAPAASAETQASEAATTASEAPQTTEATTAAPAETQSSEATTAAPAATTQTSEAATTASEAPQTTEATTAAPAETQSSEATTAAPAATTQTSEAATTASEAPQTTEATTAAPAESQKTETSSASTSSSLSASDAAAKEFIAQKESGGNYSAQNGQYYGRYQLSSSYLNGDLSAENQERVADAYVTSRYGSWTAAQAFWNANGWY
complement(574350..575144)         energy-coupling factor transporter transmembrane protein EcfT; FY406_02700           N/A                 StreptococcusrattiMNNLILGRYIPGDSFIHRLDPRSKLLSMFIFIIIVFWANNVITNLLMFAFTMVLVLLSRIKIGFFLKGLKPMIGLILFTTLFQVFFTQAGDVLVQLWIIKITDYGLGQAALIFMRFVLIIIFSTLLTLTTTPLSLADAVESLLKPLEPLKVPVHEIGLMLSLSLRFVPTLMDDTTRIMNAQKARGVDFGEGNLIQKVKSIIPILIPLFASSFKRADALATAMEARGYQGGEGRSKYRLLKWTYKDSMAIIGICCLGLILFLLKK
complement(575137..575979)         PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; FY406_02705; phage(gi371496158)      3.37e-22            StreptococcusrattiMGIILQKVSYTYQAGTPFEGRALFDVDLEIKDGSFTAFIGHTGSGKSTIMQLLNGLNIPTKGTVYVDDVAIKPDSKNKDIKSIRKKVGLVFQFPESQLFDETVLKDVAFGPQNFGISQEDAEKIAREKLALVGIAEHLFEKNPFELSGGQMRRVAIAGILAMEPSILVLDEPTAGLDPKGRRELMNLFEELHQQGMTIVLVTHLMDDVSNHADWVYVLEKGKIVLSGSPKSVFQEIEFLESKQLGVPKITQFAADLRKKGMAFDSLPITLEEFVEAIKNE
complement(575955..576797)         PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; FY406_02710; phage(gi371496158)      3.00e-27            StreptococcusrattiMADKTIELKNVTFRYDENQKEPTLNNISFHVKHGEWLAIIGHNGSGKSTAVRLIDGLLEAESGQIFIEGEELSDSNIWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENQGVSLEKMQERVREALSLVGMLDFKTREPARLSGGQKQRVAIAGAVAMQPSIIILDEATSMLDPEGRLELIKIIQKIRDDCGMTVISITHDLDEVALSDRVLVMKEGQIESSSTPRELFSRGDELLSLGLDIPFASAIIKALEPIGFTFNEGYLPEKELEDKLWALFSKK
complement(576801..577343)         CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; FY406_02715      N/A                 StreptococcusrattiMAKKENIPNLLTLIRILLIPVFLLLTSVSNSTAWHIAAAIIFAVASLTDYLDGYLARKWKVVTNFGKFADPLADKMLVMSAFIMLVGLDLAPAWISAIIICRELAVTGLRLLLVETGGEVLAAAMPGKIKTATQMFSIIFLLCHFEPWGTILLYISLFFTLYSGYDYFKGAGFLFKDTFK
complement(577355..578365)         helix-turn-helix domain-containing protein; FY406_02720                              N/A                 StreptococcusrattiMNKIGDILRDARIEKKLSFDDVVDKTGIGPHYILAMELDQLKLLPEGKTNEYLEKYAQVVGLDPVSIIHGYRNQELSDDLILPSSEDESASSSSADTIAADKDESKAKKEEKSVEAPQDLSIDLDVTQNISLTEETPQLEDPEEELEQTDTAAEKIPSRLSKYDYEEEPSRRFPWALILLVLLALAIVSYVGYIAYNQLHSDSDKTQLTTSSKKKKNTDQSSTSTTAQSQTNIETDFAEGGNNVTLSNTNGKVEITFTLTGAEDSWVSATNTDTGEAGTTLTAAEKTYTVTLAEGSTTSMLTVAVLNGVDISINGQKLDTSNLINAGLTNINVTVQ
complement(578438..579730)         PHAGE_Bacill_G_NC_023719: gp2; FY406_02725; phage(gi593777470)                       8.57e-14            StreptococcusrattiMAATRLKKRQFPDSGEEFYFNQLDNGITVFLLPKKDFKETFAAISSRFGSIDTEFTVDGKAKKYPAGIAHFLEHQLFEMENSKDASYEFTKLGADSNAYTDFDKTVYYFSAVDSIKENLALLQDFTSKTVFTDVSIEKEKNIIAQEIDMYQDDADDFLYQGILAKLYPKSPLAKDIAGSQASILSLSKHDLEENFHYFYHPSNLILLVVGSFDVKQVYKDIVTVQKERPQTKPPQIEHSDLKLLPVTSASSLQKDITLPKLAVGFRFNFIGKKTKSLLKEKLLLKLFFSLLFGWTSQRYQKWYEEGKIDDSFDMKIEVSASYQFVVIMLDTKEPIAMSNQIRQAVKKFETDENLSETHLQTLKNELYGDFISSLDTIDTLANQFIDNLWQKETYFDFPKVLQSLEIKEVMEFGRQIMTEMQVTDFTLFPK
complement(579731..580978)         PHAGE_Bacill_G_NC_023719: gp2; FY406_02730; phage(gi593777470)                       1.80e-05            StreptococcusrattiMKLAQDVHLHLIKTTKFKTNHITFRFSGELNSKTLARRVLVAQMLVTANNAYPTPQIFREKLANLYGARFSTQVSAKGQVHIVDIDISFVSDRFVPEDGSILEEIVGFLREVLFNPLASVEHYQSKSFDLEKANLMRYLKADKEDPFYYSHLELQKLFFKEKVMQHSKDATADLVAAENSYTAYQEFQKMLKEDRIDIFALGNFDDYHVLQLVEEFPLKDRQKELNFFYQQHYSKVVQEKVEQRENQQSILQLGYHLPVTYGDSNYHALLVFNGILGAFPHSKLFTEIREKQGLAYSIGSHFDSYRGLLQIYTGIDSKKRPQTFQLINKQFNDLKLGRFSSHLLNQTKKMLINNVQLSEDHPKSMINYHYNCQFLKKRCLAAKDWIDKVNEISKEDVVRVANLIKLQSIYFLEGE

#### region 2 ####
1648428..1649255                   PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; FY406_08230; phage(gi371496158)      7.43e-11            StreptococcusrattiMTEYVIDIKHLQKYYGKHMGVRDVSLSVKKGEIFGFLGSNGAGKSTTIRCLLGLIRASKGEMTLFGGKYKTLTENLRHIGYIPSEAVFYPNMKVKDVILFAAKSRKKDCSQEADRLCRILEVPLEKKIEDLSLGNRKKVGIVCALQHQPELLILDEPTSGLDPLMQERFFRLVKEACAAGSSCFLSSHVLSDIKNYCDRAAIIKDGVILTVDTLTNLTRSQLKHVTVWKDGHSESFTFTGSSSELLERLRGMQADDFLVEEPPLEDLFLQYYERR
1649263..1650051                   ABC transporter permease subunit; FY406_08235                                        N/A                 StreptococcusrattiMILFMHELKQNLRTLMIWSLSVGLICYGCILLYKSVEHQLKDMAQLYSNMGEMTKVLGLDKVSLATLDGYFATEIVIMFGLGAGMFAAMMGASSLSKEEEGHTSEFLHTLPFGRLNILIWKYFSLLFMLLIFNGMVVGLEVLGIWQIGLDFSYDLLLSYQLLALLMQVEVVSLAFLLSALSRKKQIGLSFGLVLLLYVMDMMSRIVPDIEFLKYLTPYYFANGADVFSKVAVQPAYLAVAFAVIVISLILGSVYYQRKDLSA
complement(1650833..1651321)       PHAGE_Strept_Dp_1_NC_015274: QueF; FY406_08240; phage(gi327198315)                   2.93e-58            StreptococcusrattiMSQEEMKDLTLLGKQKTTYDFDYDPHILEAFDNRHQDNDYFIKFNCPEFTSLCPITGQPDFATIYLSYIPDKKCVESKSLKLYLFSYRNHGDFHENCINTIGKDLVELLQPRYLEVWGKFTPRGGISIDPYYNYGRPNTKYEEMATYRLMNHDIYPETIDNR
complement(1651335..1652066)       PHAGE_Strept_Dp_1_NC_015274: QueE; FY406_08245; phage(gi327198318)                   4.40e-75            StreptococcusrattiMGFASMKKQHLLKLPILEIFGPTFQGEGRSIGQKTMFVRTGGCDYHCDWCDSAFTWDGSEKPTMMTSDQVIDELDKLGHYDYVTLSGGNPCLLAANMEELVTKLKDRQVTLAVETQGSRWQSWLKDIDQVTLSPKPPSSKMDVHFETLDFIVSQLDPQKVAYKIPIFDEADLDFAKMIQERYQPDVLYLSAGNPEPKASGDIVQHQLTRLKNLWMRVAQDNSWGNVRVLPQLHTLVYDNKRGV
complement(1652048..1652494)       PHAGE_Strept_Dp_1_NC_015274: QueD; FY406_08250; phage(gi327198317)                   1.37e-16            StreptococcusrattiMFFAPKEIKKETGESLIYCPRRVLVSKEFTFDAAHHLFSYEGKCKALHGHTYHLQIAVSGFLDDKGMVYDFGDLKTIYQNLLEPHLDHAYLNESLPYMNTTAENMVYWIYKTVEKALPDEHGLQMESVRLYETPSAYAEFRKEWDLQA
complement(1652494..1653147)       PHAGE_Cellul_phiSM_NC_020860: queuosine biosynthesis protein QueC; FY406_08255; phage(gi472342216)     3.16e-60            StreptococcusrattiMKRQSALVVFSGGQDSTTCLFWALQHYEHVETVTFAYGQRHSQELAVAKEIAAEQGVKHHILDMSLLGQITENALTSDIDIEAKNGEVPNTFVDGRNHLFLSFAAVLAKQRHITDIITGVCQTDFSGYPDCRDVFVKSLNVTLNLAMDYEFVIQTPLMWLDKSETWALADSLGKFDYVREKTLTCYNGIRGAGCGQCPACHLRQTGLDKYLAQKEKN
1653779..1654207                   winged helix-turn-helix transcriptional regulator; FY406_08260                       N/A                 StreptococcusrattiMKEPFDLFRDFINTVETTVQELAKENNIEHLGGPQGHTVSYLFKNQDKEIFIKDIEERLHISKSVASNLIKRMEKNGFISIIPSQKDKRCKQIILTPLGLNKAGDIITFHKKIHEQLLKGIDKADLVTARRVFEQIKQNLEK
1654217..1656019                   PHAGE_Bacill_SPbeta_NC_001884: ABC transporter; FY406_08265; phage(gi9630145)        1.70e-25            StreptococcusrattiMFKIFKRLNAKEWGMILLSTAFICLAVWMDLKTPEYMSDITTLLQTKGTTASDIMKPGSKMLIFSFGSFLMAVFVGFLAARTAAGFTTRLRSDIFNQVMDYSDAEIKKFSIPSLLTRTTNDLTQLQIMITMGMQVVTRGPIMAVWALTKIWGKSDEWTGAVGVAVLIVLILLSVLMFVAFPRQRKVQGLTDALNSTTRESLSGVRVVRAYNAEDYQENKFKEENKNLTKLNLFVYRLMSLMNPVMTVVSSGLTLAIYWIGSYLIDDISIPRTSMTAAAAAVKDRITVFSDMVVFSSYAMQIVIGFMMMVAIFIILPRALVSAKRINEVLALESSIQFKKTSKKTNGQKGEIEFHDVSFRYNKNSRAVIEHISFKAKAGETVAFIGSTGSGKSTLINLIPRFYDATEGWIKVDGVKIQDYSHDDLNKKVGYIPQKAVLFSGTIRSNMEFGESSQTPLDDAKIWEALELAQAKDFVENKEKGLDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRAELRKKTRDMTKLIVAQRISTIMNADQILVLDQGKVVGQGTHKELLANNEIYQEIAYSQLSKEELENGQ
1656009..1657769                   PHAGE_Bacill_SPbeta_NC_001884: ABC transporter; FY406_08270; phage(gi9630145)        1.36e-32            StreptococcusrattiMDNKKKSLLSQMAPYLKGYKALFALAVVFTIASSTITVIGPDRLKEMTDTVTKGLAGKIDLDKIAEIAFTLALMYIGGALVSYAASFIVSTLIQKFSQRLRNAIAHKINKVPLKYFDSHSQGDTLSRVTNDVDLMTQSFNQSLVSMVAAVVLLIGSIFMMIKTNGALAATAILSVFAGFALSSIIMVKSQPLFKRQQKNLANVSGYVEEIYSGHNVVSSYNARRQSKEQFEVLNNQLFSSMWKSQFFSGIMMPLMQFIGNFGYVMVCIVGARMALNGDVTMGTIVAFMTYVRIFTQPISQIAQGITQLQSANAAMGRVFEFLNEEEMEAEDHKQRQLDTVKGDVSFDNVFFGYQPDKTIIHDFSAHAKAGQKVAIVGPTGAGKTTIVNLLMRFYEVDKGSISIDGVNVHDMKREEVHDAFAMVLQDTWLFEGTVKENLIYNQEHITEEQVIAAAKAVGVHHFIKTLPEGYDTVLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNHDDLMAQDGFYADLYNSQFTEEDDAA
