gi|00000000|ref|CP049853.1|  Escherichia coli strain UPEC-774U/190308 plasmid pEcoUTI1d, 102591, gc%: 52.90%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
697..708                           attL                                                                                 N/A                 TCTCCTGTATTT
complement(1221..1961)             PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; G9W34_24135; phage(gi971744895)     1.13e-05            EscherichiacoliMNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLNGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRTLPPLK
complement(2082..2270)             serine/threonine protein kinase; G9W34_24140                                         N/A                 EscherichiacoliMASDTFSCRRRLSAGFFSVSACSWHYPNSPKNGKPALSPRHDWLNTGSLLQNIPLRIWFYPQ
2637..3806                         hypothetical protein; G9W34_24145                                                    N/A                 EscherichiacoliMNQKWKTLIVSVLTPSSIISGIALIVLWGYFSRLDRLDIFFDVMNIKSILVLVCCTTILSLIMIIFIFFITSFFIPIVIPYDIKNLPAYNKIQGNFLSVMMLSGLFPMAFIYVLYCAFDFDQSVKDNSGWLSILSIGVLIVVISAIINTRYLEYDLSFKNNRMKLLRRVQIYLIIPLSIALLVHLQVIPLEMVFRNIETSDKSINFKVIAELAFMSYFIFILTILPGLIYLKMNPQHKLSKRISSAFVASLMILLVISTQITVLPVIFTHSVIKLSGISDFKIHSYIIKTSEYPEEFFSNAVWGKKNIKPGEYYSVQAVSMFTTNQFILLCPKDIIRFYRESWKFDLLNVDFDTNTRKKLQEEAAYCVPISAISVKRWDMPLQGSKPSN
complement(4032..4207)             IS3 family transposase; G9W34_24150                                                  N/A                 EscherichiacoliFFRSLKTGWGRRMVTQARARFGNKSEIIFIITIAPDLTITTVVRWRDQKTDTVFTVAA
complement(4653..4925)             transcriptional regulator; G9W34_24155                                               N/A                 EscherichiacoliMTPSPYPRNNFNTELIQSCMNGEHFSLLIEISPIRSKKNIMALKEYLVDGYSKQESCERNNVSISYFCLCLKKLNYTHSIVSALKYFYRE
complement(5450..5886)             PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; G9W34_24160; phage(gi17546153)     1.73e-58            EscherichiacoliMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGEASAVVSGCRVRSCTSFSDEPMTGG
6168..6524                         TonB-dependent receptor plug domain-containing protein; G9W34_24165                  N/A                 EscherichiacoliMYMNVIRNVICTLIILPIGLQAETSHSSMAKDTITVVATGNQNTVFETPSMVSVVTNDTPWSQNAVTSAGMLKGVAGLSQTGAGRTNGQTFNLRGYDKSGVLVLVDGIRQLSDMAKSSG
complement(6566..7779)             PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; G9W34_24170; phage(gi157166067)     0.0                 EscherichiacoliMTKNTRFSPEVRQRAVRMVLESQSEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFGEGGVRPPLEKMMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
7802..7834                         attL                                                                                 N/A                 AGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAG
7833..9452                         TonB-dependent receptor; G9W34_24175                                                 N/A                 EscherichiacoliSGTYLDPALVKRIEVVRGPNSSLYGSGGLGGVVDFRTADAADFLPPGETNGLSLWGNIASGDHSTGSGLTWFGKTGKTDALLSVIMRKRGNIYQSDGERAPNKEKPAALFAKGSVGITDSNKAGASLRLYRNNTTEPGNPTQTHGDSGLRDRKTVQNDVQFWYQYAPVDNSLINVKSTLYLSDITIKTNGHNKTAEWRNNRTSGVNVVNRSHTLIFPGAHQLSYGAEYYRQQQKPEGSATLYPEGNIDFTSLYFQDEMTMKSYPVNIIVGSRYDRYKSFNPRAGELKAERLSPRAAISVSPTDWLMMYGSISSAFRAPTMAEMYRDDVHFYRKGKPNYWVPNLNLKPENNITREIGAGIQLDGLLTGNDRLQLKGGYFGTDARNYIATRVDMKRMRSYSYNVSRARIWGWDMQGNYQSDYFDWMLSYNRTESMDASSREWLGSGNPDTLISDISIPVGHGGVSAGWRAELSAAATHVKKGDPHQAGYAVHSFSLSYKPVSVKGFEASVTLDNAFNKLAMNGKGVPLSGRTVSLYTRYQW
9459..10250                        DUF4198 domain-containing protein; G9W34_24180                                       N/A                 EscherichiacoliMMKNTGYILALCLTASGHVLAHDVWITGKQAENNITAEIGYGHNFPSKGTIPDRRNFFENPRIYNGKETITLKPASTDYVYKTESASKDNGYVLSTYMKPGYWSRTSSGWKPVSREGRNDVAYCEFVTKYAKSFIPGEQQMPAQLYQSPTGHELEIIPLSDISRFSEDVKLKVLYKTSPLAGAIMELDSVSYLKSSRHTHAVEHKHPVHKAELTFVTNEDGIVTVPSLHIGQWLAKVQNKKSFQDKSLCDETVDVATLSFSRN
complement(10313..10921)           PHAGE_Stx2_c_1717_NC_011357: transposase; G9W34_24185; phage(gi209447153)            1.53e-128           EscherichiacoliDAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGELYAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTLSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRVALPTE
complement(10989..11768)           PROPHAGE_Escher_CFT073: transposase/IS protein; G9W34_24190; phage(gi26248359)       0.0                 EscherichiacoliMMELQHQRLMVLAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
complement(11768..12790)           PROPHAGE_Escher_CFT073: transposase; G9W34_24195; phage(gi26248360)                  0.0                 EscherichiacoliMVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRGFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
complement(12876..13821)           PHAGE_Stx2_c_1717_NC_011357: transposase; G9W34_24200; phage(gi209447153)            3.45e-30            EscherichiacoliMSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLNRLQKESDRERYADWGVPGSTASVASDPHPAVPITTPRKAAVACGAVLPELRRFTELSGRGYRRTAGVDARLPGYPDGTGKTCLYSVRCHRAGTCTFAAHRAGYRRTGAAGPRADLEVCRAHPAVSPVRNIRPARCGAEPFTAVGLGGCMLPAAVSAGRGASWLCADRAPCHACPGAVARQENEDRAVMDLRSRPRRVNAGAGGVVRLQPGQKRHPSADPSCGVQWCTAGGCT
complement(13870..14217)           PHAGE_Stx2_c_1717_NC_011357: transposase; G9W34_24205; phage(gi209447152)            2.91e-76            EscherichiacoliMIPLPSGTKIWLVAGITDMRNGFNGLAAKVQTTLKDDPMSGHVFIFRGRNGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTPAQLAMLLEGIDWRQPKRLLTSLTML
complement(14214..14618)           PHAGE_Stx2_c_1717_NC_011357: truncated transposase; G9W34_24210; phage(gi209447151)     1.07e-41            EscherichiacoliMKSLTAVRKKSPNYPVEFKIKMVELSHRPEISVAQLAREHGINDNLLFKWRQYWREGKLRPPSTTENNVPELLPITLDAEDVVPTTSPRSQPVAAATPESLNISCEVTFRHGSLRLNGAISENILNLLIRELKR
complement(14647..15030)           PHAGE_Stx2_c_1717_NC_011357: putative transposase OrfB; G9W34_24215; phage(gi209447179)     2.41e-72            EscherichiacoliLSTWQGVVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRKRRLSTVWQILKFLRE
complement(15120..16628)           PHAGE_Bacill_BalMu_1_NC_030945: tail assembly protein; G9W34_24220; phage(gi100053)     5.69e-17            EscherichiacoliMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECRGVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASLTALLSGNYSESKVDMAEQLNRKLKGWAMFYQFVDFKAKVFSYIDRVVFWKLAHWLARKYRTGIASLMRWWCKSPKPGQSKTWVLFGKTNHGKLSGEILYWLVGQGKKLFRWRLPEGNPYLRTETRNTYTSRFTEVAMAFASI
complement(17301..18040)           PHAGE_Stx2_c_1717_NC_011357: putative transposase; G9W34_24225; phage(gi209447180)     8.09e-72            EscherichiacoliMTKNTRFSPEVRQRAIRMVLESQGEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKCHCWISCVSCTGSDRYAVNYILPRQRITTVSNSDIILINAVPVRSAMTGRKRYCAYTMGIIRYTVCVKSGVSCYGKESGPDVQWRASWRLWDLPVFSGVKRSALPSAGKPLPQATATVSLWQNVLTSCGWLILLAC
18063..18095                       attR                                                                                 N/A                 AGTTTAGTCTCCAGGATTCCCGGGGCGGTTCAG
20742..20753                       attR                                                                                 N/A                 TCTCCTGTATTT

#### region 2 ####
27802..27834                       attL                                                                                 N/A                 CTGACGCTCAGTGGAACGAAAACTCACGTTAAG
41669..42366                       PHAGE_Escher_RCS47_NC_042128: flap endonuclease; G9W34_24350; phage(gi100131)        7.62e-54            EscherichiacoliVASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSRPRAYSRAVTSSSARKWTNSGAMSGLNRASAGCFTRMTVSGRRLLRTYSVNALWRRWGVLACCHPLTWYGRMAGRCMNPARESCTSASDIRSELSGITIGSTWHGWDGSRCRSQNRWSCMTKSSGIITNTINAA
complement(42416..42889)           PHAGE_Erwini_vB_EamM_Caitlin_NC_031120: hypothetical protein; G9W34_24355; phage(gi100060)     4.08e-22            EscherichiacoliMKISLISAVSENGVIGSGPDIPWSVKGEQLLFKALTYNQWLLVGRKTFDSMGVLPNRKYAVVSKNGISSSNENVLVFPSIENALKELSKVTDHVYVSGGGQIYNSLIEKADIIHLSTVHVEVEGDIKFPIMPENFNLVFEQFFMSNINYTYQIWKKG
43047..44060                       PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; G9W34_24360; phage(gi100002)     4.17e-12            EscherichiacoliMKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWLWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
44263..44613                       DUF3330 domain-containing protein; G9W34_24365                                       N/A                 EscherichiacoliMEVVAEGVETPDCLAWLRQAGCDTVQGFLFARPMPAAAFVGFVNQWRNTTMNANEPSTSCCVCCKEIPLDAAFTPEGAEYVEHFCGLECYQRFQARASTATETSVKPDACDSPPSG
44739..45299                       PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; G9W34_24370; phage(gi100061)      1.22e-68            EscherichiacoliMTGQRIGYIRVSTFDQNPERQLEGVKVDRAFSDKASGKDVKRPQLEALISFARTGDTVVVHSMDRLARNLDDLRRIVQTLTQRGVHIEFVKEHLSFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKSLSSERIAELRQRVEAGEQKTKLAREFGISRETLYQYLRTDQ
45302..48268                       PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; G9W34_24375; phage(gi100060)      0.0                 EscherichiacoliMPRRSILSAAERESLLALPDSKDDLIRHYTFNDTDLSIIRQRRGPANRLGFAVQLCYLRFPGVILGVDELPFPPLLKLVADQLKVGVESWNEYGQREQTRREHLSELQTVFGFRPFTMSHYRQAVQMLTELAMQTDKGIVLASALIGHLRRQSVILPALNAVERASAEAITRANRRIYDALAEPLADAHRRRLDDLLKRRDNGKTTWLAWLRQSPAKPNSRHMLEHIERLKAWQALDLPTGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALATEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDAFAAIEAVMSWDSFAESVTEAQKLAQPDDFDFLHRIGESYATLRRYAPEFLAVLKLRAAPAAKNVLDAIEVLRGMNTDNARKLPADAPTGFIKPRWQKLVMTDAGIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPEKFTSLKQSSELPLAVATDCEQYLHERLTLLEAQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMVLPHVKITELLLEVDEWTGFTRHFTHLKSGDLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAGHWGDGTTSSSDGQNFRTASKAKSTGHINPKYGSSPGRTFYTHISDQYAPFHTKVVNVGLRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGDAAYDALKPMIGGTLNIKHVRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERAAHALRGNGHAVDDSLLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
48511..48524                       attL                                                                                 N/A                 GGCACTGTTGCAAA
complement(48563..49267)           PHAGE_Escher_RCS47_NC_042128: hypothetical protein; G9W34_24380; phage(gi100027)     3.10e-175           EscherichiacoliMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
49332..49595                       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; G9W34_24385; phage(gi100027)     2.04e-17            EscherichiacoliNNVIEADHGKLKILIKPVRGFKSIPTAYATIKGFEVMRALRKGQARPWCLQPGIRGEVRLVERAFGIGPSALTEAMGMLNHHFAAAA
52882..52895                       attR                                                                                 N/A                 GGCACTGTTGCAAA
54094..54126                       attR                                                                                 N/A                 CTGACGCTCAGTGGAACGAAAACTCACGTTAAG
