gi|00000000|ref|CP050967.1|  Bordetella bronchiseptica strain FDAARGOS_693 chromosome. 5094150, gc%: 68.32%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(637589..638893)         PHAGE_Bacill_G_NC_023719: gp258; FOC01_03050; phage(gi593777714)                     1.53e-162           BordetellabronchisepticaMPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIGQTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVDTTNILFIVGGAFDGLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATLDELDEAALVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKTGARGLRSILEGALLDTMYDLPSQGNVSRVVLEANAVEGDGKPLLIYADESEAASGEKAGRGEVRDAAA
complement(638998..639651)         PHAGE_Agroba_Atu_ph07_NC_042013: ATP-dependent Clp protease proteolytic subunit; FOC01_03055; phage(gi100676)     2.86e-76            BordetellabronchisepticaMQRFTDFYAAMHGGSSVTPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKDISFYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQAREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVLTSRAQT
complement(639654..640964)         trigger factor; FOC01_03060                                                          N/A                 BordetellabronchisepticaMQPVVETLSGLERRVDLAVSVAEVEKEVQAQLKRVGRTAKVAGFRPGKAPLAMLERSHGPGIRYDVINSLVGRAFEQAVDGAKLRVAGSPTLTPKTEGVADDTLAFTATFEVYPEITVPDLSALAVTRYDTPVTDAEVNQTLDVLRKQRAKFETREGRASQDGDRVVLDFAGTIDGVPFEGGKAEDFPFVLGQGRMLPEFEEAALGLKAGESKVFPLKFPDDYQGKEVAGKTAEFTITVKEVAEGVLPEVDAEFAKSLGQAEGDVEKLKADIRTNIEREVKARLQGRTKGSVMDALVEAGKFDVPKALVDSDVEGRIAAAREELKQRGVPNADSVPMPAEVFSTESERRVRLGLLVSELVKQAQLQAKPEQVRARIEEFAQNYEQPAQVVSYYLADRQRRAEIEAIVLEDNVVAHVLENAKVADEKVPFDQLMGMA
641161..641721                     PHAGE_Caulob_CcrColossus_NC_019406: UPF0114 protein; FOC01_03065; phage(gi414088293)     1.88e-32            BordetellabronchisepticaMHPIQEPRLGPLPALIFSSRWLQLPLYLGLIVAQGVYVLLFLKELWHLVTHTLSFGEQEIMLIVLGLIDVVMISNLLVMVIVGGYETFVSRLRLEGHPDQPEWLSHVNASVLKVKLAMAIIGISSIHLLRTFIEASNLGSPNSRFTETGVMWQTIIHVVFILSAIGIAYVDRLTSQSAGHGAHPSH
complement(641819..642025)         PHAGE_Lactoc_bIL312_NC_002671: Csp; FOC01_03070; phage(gi13095918)                   5.75e-21            BordetellabronchisepticaMATGIVKWFNAEKGYGFIMPDDGSKDLFAHYSEIRSEGYKSLQENQRVSFEVGQGPKGPSAKNIKVIA
complement(642371..642937)         DUF924 family protein; FOC01_03075                                                   N/A                 BordetellabronchisepticaMSDSMAGPAALPDAATVLAFWREAGPARWYAKDEQFDRTFTMRFEAAHMAAARGELMAWSASAEGVLALLILLDQFPRNAYRGTGHMFATDGLARQICEQAIAAGLDRQGPEDLRQFYYMPLEHAEDLAAQEQCVSLMAPLHAETLRWAEIHRDIIARFGRFPHRNTVLGRATTAEEQQFLDQGGFSG
complement(643021..643224)         PHAGE_Lactoc_bIL312_NC_002671: Csp; FOC01_03080; phage(gi13095918)                   4.71e-21            BordetellabronchisepticaMETGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKGPQATKIQIL
complement(643531..643851)         hypothetical protein; FOC01_03085                                                    N/A                 BordetellabronchisepticaMDISSHLLAELANGVCLETRVDGQAIGTYVVLGPADLDAIADIVPRQRVEEGADIHAAAVDSVDGAQMEIDQVIENMNPGDVAVFFCADGDCYGAALDLLGLPVDE
complement(643893..644174)         hypothetical protein; FOC01_03090                                                    N/A                 BordetellabronchisepticaMVYEDFFWFMAALVALALVGGALFGRLGRLAHSVIAMLGLAIAVGVAVLLGARGEDVGPYAPLLAIAAFMFCLMIGGAATLVTRRVRRRHLTH
complement(644249..645496)         PROPHAGE_Shigel_301: serine protease; FOC01_03095; phage(gi24114232)                 5.00e-10            BordetellabronchisepticaMKPTSILARLPRYLGACALAALAVAPLAPAQAQAPLPAGFGAAEVRQYLSGLSSDALRQQASWLAPALLRPYLSGLTDAQLRQYVQALTPGQITQGLAALTPAQRARLQREFERQARRQVQQAVRAEVAARSARAVAMGQSASMLLLDAEMGTLAQRQGDLRRGHDEGAFWARGSANRFKVDTPDTPAFDLRVEYLTLGADHGWRLDTGRLYLGAYAGVSRARMDDNDIMHGRIESRFLGTYLTYVDNGGFYVDAVSKLGRIDESVSFDLPLGLGDYDDDISHTTYTGSVEAGYHFKLPQRWFVEPQAQLIYSRSSQTSVQGRAGVRAGRDFTLAGGATLRPYVSASYLHEFSHDDSVDFGGKSYDAELPGSRWQLGAGAALDVGAHRAYADLRYGHGANISQELSLNIGYAYRF

#### region 2 ####
1471050..1471805                   PHAGE_Bacill_G_NC_023719: gp350; FOC01_06890; phage(gi593777806)                     4.50e-23            BordetellabronchisepticaMARLDNTDATSMTGRPPLIMNDQRKSSRASCRASANYLRAEAALPRRRHPQPPVSGAATLQELQAQVDTLELENARLRRLALTDDLTGAYNRRYFATMLRDALRERVRGGGLALCLFDIDNFKTINDRHGHFAGDYLLRRVALAARRCMRRTSDDLCRVGGDEFAAVLSAPSASAALAQAQRVLDAIRAIAPLDTPHGPRHVTATFGLAWIAPGVSLTWEQAYSDADRALYRAKQAGKNRLHLIASRTAGA
complement(1471821..1472030)       hypothetical protein; FOC01_06895                                                    N/A                 BordetellabronchisepticaMTNTTHDLKPGYYWYTMENDPLAIIHIHEDGGATLMGTDYRVEPEGVASMIRQGERFFWIEPPVISQEG
1472151..1472666                   PHAGE_Salmon_SPN1S_NC_016761: hypothetical protein; FOC01_06900; phage(gi374531240)     2.11e-09            BordetellabronchisepticaMTPGPRTSPLVFASASIQAIEAGKQRQTRRIVKPQPPPAATLWYCDPAHAERWIAATARPDDATPAQTVSKWLVCPYGKPGDLIDLAHESGQPFGRAILMGVRIQRLQAINEADAAAEGFAAASRLDEFLPETPPQAAFALAWCERYGARAWAANPWVWVLEFRLLNQHGH
1472939..1473256                   virulence factor; FOC01_06905                                                        N/A                 BordetellabronchisepticaMKKWFVAAGIGAAGLMLSSAALARVDIGVSIGIPGVVYPAPVYVAPAPVYAPPPVVHYPAPVYVRPQVVYPAPVYYGGPRYYKGHRHYDRGHRGHRGHGRGHWRD
complement(1473325..1473492)       hypothetical protein; FOC01_06910                                                    N/A                 BordetellabronchisepticaMEYVSMVNRNSHTRPHNGWWKASSAPRRWLDAMRSDKPAEGQTAAPAAKVPAEQA
complement(1473443..1473679)       hypothetical protein; FOC01_06915                                                    N/A                 BordetellabronchisepticaMIGDFRVRCTVVQEEGNQYSVQICTRRVGGNAPEKCWTVPGQVSYQDREDAERTSQQIFERINGVRFNGEPEFAHASA
complement(1473970..1475325)       PHAGE_Bacill_G_NC_023719: gp287; FOC01_06920; phage(gi593777743)                     3.15e-09            BordetellabronchisepticaMLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQALPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGASSDENVEVRRWLPGAADARGNPAALGFEVRDHVAVGEPLGLDFDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPKVDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPEHSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQNKPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP
complement(1475372..1476712)       PHAGE_Bacill_G_NC_023719: gp70; FOC01_06925; phage(gi593777538)                      1.24e-96            BordetellabronchisepticaMSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLSAEELMQLVDRAVAALNEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLETSLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGADIYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAYAADEQYFPDGLNPTFYRPTDRGLEAKIQQKLAFLDELDAQERARKR
complement(1476814..1477446)       outer membrane lipoprotein chaperone LolA; FOC01_06930                               N/A                 BordetellabronchisepticaMHMIRRAAGALAVFAVATLAAAPAWAATAQEQLDTFVATVKGATGSFKQSTVSPQGATQPAQSGTFAFQRPGKFKWAVQLPYEQLIVSDGKQVFQYDPDLAQVTVRQVDQAIGTSPAAILFGAGQLGQAFAVSALPDRDGLQWLRAKPRNADAGFSQVDIGLRDNQPARIELVDAFGQTTRVELSNLLPGAVPASEFQFTPPQGVDVVKM
complement(1477446..1479815)       PHAGE_Mycoba_Baka_NC_042316: neck protein; FOC01_06935; phage(gi100207)              4.11e-97            BordetellabronchisepticaMSRMPRISNATPRASRNTRNGPSPFQARISALLREARWILFAALAAWLTLVLATWSPADPGWSHSVSGDAIHNGGGTLGAYLADILLYLFGFSAWWWVVLLLHRVRAGYRRLASNLRVTSGRQPDALPRVHWEEGIGFVLLLTGSLGIEALRLYSWGMHLPGGTDGESGAGGVIGQMLAGWLSRGVGFTGGTLALLVLLAVGLSLFFSFSWLQIAERVGSWLEGLVRRVRDSYAAREDRKVGEVAKAVRTEQVVAKQEKLVHEQPVRIEPAITVVPRSDRAEKEKQQSLFAPPAGESDLPAIGLLDPPLQNQETVSAETIEFTSRLIEKKLADFGVSVVVVAAQAGPVITRYEIEPATGVKGSQIVNLAKDLARALSLVSIRVVETIPGKNLMGLELPNPRRQMVKLSEILGSQTYHASHSVLTMALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINAMILSLLYKADASHTRLILIDPKMLEMSVYEGIPHLLAPVVTDMRHAANALNWCVGEMEKRYRLMSKMGVRNLAGYNSKIRDAIKREEPIPNPFSLTPDAPEPLQALPHIVVVIDELADLMMVVGKKIEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQMGAETLLGQGDMLYMPPGTGLPVRVHGAFVHDDEVHRVVEALKAQGEPNYIDGLLEGGEGETGDGLSSVTGMGDAESDPMYDQACEVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQAGMVSPMQSNGNREILVPAREEA
1479848..1480807                   PHAGE_Bacill_G_NC_023719: gp344; FOC01_06940; phage(gi593777800)                     1.20e-69            BordetellabronchisepticaMSTPKHAKVLILGSGPAGYTAAVYAARANLSPALITGLAQGGQLMTTTEVDNWPADVQGVQGPDLMQRFLQHAERFNTEILFDHIAKVDLSRRPFTLTGDTGNLYTCDALIIATGASAKYLGLPSEQAFMGRGVSGCATCDGFFYRNKDVVVIGGGNTAVEEALYLSNICRKVTLIHRRDKFRAEPILVDKLMDKVANGNMELKLFHTLDEVLGDDSGVTGVRIRSTETDATEDLDVAGCFVAIGHQPNTGIFEGQLEMKDGYIITKSGLSGMATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRWLENAGQ
1480794..1481480                   DNA mismatch repair protein MutS; FOC01_06945                                        N/A                 BordetellabronchisepticaMRGNKTGLADLKRLHEQVRETRARAEAAERETAARAAAAAPEADVAAFRRAVQAATPLKPSGRLANRRPDATPATAAAVASRRAAALGEAAPRADAGVSDASDIGALLTDGGTAYVRAGVAPDTARNLKRGQWRVGAELDLHGLRVEQARHAVLSFLDECLEHGIRCVRIVHGKGYGSQGLEPVLKDKARTWLVQKADVLAFSEAPERGGGAGALLVLLRQAEAGGRP
1481477..1481809                   PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; FOC01_06950; phage(gi311992758)     1.46e-09            BordetellabronchisepticaMNSWIYLSVAIVAEIIATSALKSSAGFTRLLPSLVTVAGYAIAFYFLALTLRVIPVGVAYAIWSGVGIVLISLVGALLFKQHLDLPAIIGIALILAGVVVMNVFSKSVGH
complement(1481823..1483889)       PHAGE_Aeromo_44RR2.8t_NC_005135: hypothetical protein; FOC01_06955; phage(gi37651715)     7.57e-08            BordetellabronchisepticaMPFTGNTPQEFEQRLRRIYTLYTLGFILLVLLLALAELMGMARSWIGYVFLLVTVSLYACIGIVCRTSDQVEYYVAGRRVPAFYNGMATAADWMSVASFIGVAGTLYLTGYGGLAYIMGWTGGYVLVALLLAPYLRKFGQYTIPDYLGARYGGKLPRLAGVFCAILCSFTYLVAQIYGVGIITTRLTGISFELGIFVALGGMLVCSFLGGMRAVTWTQVGQYIILVIAYLVPVVWLSVKHTGMPVPQLSAGTVLQEITEKEVYLAHDPGERAVRQLWRSRADEMDERLRALPDSLAHEKDRLRGRLAQLNASDAPMVEIRSLERELASYPATVEEARTLWSQARAAFEARATPPVPHAEPFPAEDPRERENMRVNFLALVLCLMLGTAGMPHILMRSYTTPSVGEARRSVCWSLLFILLLYFMAPALALLVKYEVYTQVVGTSFLSLPSWVHAWSAVDIHLLDVLDVNRDGIVQLGEISMGADVVVLAMPEIGGLPYVVSGLVAAGGLAAALSTADGLLLTLSNSLSHDTWYRVVSPRMSAGRRVMVSKILLLLVAFGAAWVAARKPADILFMVSAAFSFAASSFFPALVMGVFWRRANKWGATLGMFAGLAATFAYMAHTHPWLREWVFGVTRAEPVDLWWGIQPVAAGVFGAPIAFLTIIVVSLLTPRPDSATEALVDYLREPGGR

#### region 3 ####
4759984..4760196                   PHAGE_Pelagi_HTVC008M_NC_020484: 30S ribosomal protein S21; FOC01_22480; phage(gi460042545)     4.02e-05            BordetellabronchisepticaMPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQQLPPRLY
4760216..4762246                   PHAGE_Helico_phiHP33_NC_016568: DNA primase; FOC01_22485; phage(gi371671350)         1.82e-52            BordetellabronchisepticaMIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENRSPRQQAESARRKAEVSRHTQVLDAAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVFDSYEDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGKGEPKYLNSPETPLFSKGHELYGLWEARLAIRQEGQVVVVEGYMDVVGLAQQGIANAVATLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAEHDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIPECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADEAPPDWAFEPVHDFEPDAYSVGAVDGEPGMPAAGGWQERKGRQGGDWKGKKGDWKGKKGDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGDQQLEVIDHGPHLGLVRDLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWDDALRRMEFDAARAEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAQ
4762927..4765209                   PHAGE_Synech_S_CBS3_NC_015465: group 2 RNA polymerase sigma factor; FOC01_22490; phage(gi331028036)     9.41e-39            BordetellabronchisepticaMTKSTGKSPSAIDAATAQSTTAKRAASMAAEKAPAKTAVKVAKPAAKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAEDKLADLVGAARPAPSGRRPGRPAKNANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIARGPVSPEEYEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVVDGLVDPEDGEEYAGAGVTADEDEGDDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDIIQTELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETNLQWVLDEVAAAHAYSETLERQIPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
4765219..4765297                   tRNA                                                                                 N/A                 GGGCCTCTAGCTCATGCCTGGTTAGAGCAGCGGACTCATAATCCGTTGGTGCCGAGTTCGACTCTCGGGGGGCCTACCA
4765691..4766305                   hypothetical protein; FOC01_22500                                                    N/A                 BordetellabronchisepticaMQSLRGFLKDTANGWLIFAIGLTGGWIISTAPGWLRASRLEDWWNIATAVATVLAVVVALGIAIYQDLVARTARRREPLWSLDAVVRRGAYLISRIPCSGHELPYVESYFRHEASVSAVNSVQRALHAFPIQTLADYSAIQAVFEMQDALQIAIEVLETILPVGHGLAEKWTAKHAQIQAAQYLTDIAIARLRVALDGAGASTS
4767160..4767378                   PHAGE_Achrom_JWF_NC_029075: hypothetical protein; FOC01_22505; phage(gi985758713)     1.22e-05            BordetellabronchisepticaMSYEAPIAAFIPGRGYLVTDLDLTKTGKERIAEWLTFHPGESVERVPQDEIYKIITGRRIWTLDDKVPDTDG
complement(4767618..4767917)       PHAGE_Burkho_Bcep176_NC_007497: gp17; FOC01_22510; phage(gi77864642)                 1.56e-10            BordetellabronchisepticaMNRIGGVGIAWYRKEDYERVRAISNDAHTFPDTFEDWEKRAEERREEILKLGHVVIKAYIDPATFPAWCRANRYKVDAKGRMAFASAEAHRVTSHVHKD
4768202..4768579                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; FOC01_22515; phage(gi157166006)     3.38e-29            BordetellabronchisepticaMNMEIRPVRTEADYKSALKEISRLMESAPELGTPDGDRLDVLATLVQVYEARHYPIDLPDPVEAIKFRMEQGGLTPKDLEPMIGKRNRVYEVLNRKRGLTLPMIWRLHTELGIPAESLIRPPAHA
