gi|00000000|ref|CP060431.1|  Listeria monocytogenes strain 134 chromosome. 2865554, gc%: 38.06%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
113466..114299                     PHAGE_Bordet_vB_BbrM_PHB04_NC_047861: exonuclease; LMMA_0110; phage(gi100048)        3.38e-09            ListeriamonocytogenesMLKINTTTFNPQILYIANCYTNEVRVGENHHHDFLEISIICEGNVIYDIEGERVKLGKGDMLIFNPGVSHYDITEPGMTNAQLHIGFRNFALEGYTRNTFPFKKAFLRKKEEESAILSISKQIIEEKDAGKPGYDLILKAFVMQLIIHVLREATPEQLENNGVKLSTDEQQKQILVNEIIHYMEKHHTEDVSLSTLSQTMYISPAYISKVFKEETGESPINYLIKIRLTRAEELLKNKDVSVKQAANMVGYNDAYYFSKLFKKYYGFPPSENWRKSS
114334..115449                     Esterase/lipase; LMMA_0111                                                           N/A                 ListeriamonocytogenesMDYEKALAFIKSNSTLEQEEGTEVIFKQAQETVRGNLDPFLLKDLKQHLGGTNDAIKEAPQEIQMPDFSNLEIATAAALQMRATMGSPNIDLSNGVTTEYRVVEGYYGDIPVRIYRHEEATKPVPAFIFYHGGGFVGGTSAVVENFCKGIAEKLPAVVINVDYHLAPEFPAPAAPKDCYRVLEWVVEQSNELGIDASKIGVSGDSAGGTLAAAVSYMDYEAETNYVGFQALLYPALTLVDEDNEKYQWDISKFGASEDTLPLVAPGIIGMNSSGELLRTAYVRDENPAAPIYSPLSAVDKSIYPPTLIASAEFDALRAFADVFAKELRASGVQTKAIVYQGMCHAFIDKYGIFPQAEDVADEIVQMMKEIF
115553..116263                     EAL domain-containinng protein; LMMA_0112                                            N/A                 ListeriamonocytogenesMMGLMKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHRITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
complement(116233..116928)         Crp domain-conteining protein; LMMA_0113                                             N/A                 ListeriamonocytogenesMLHTIDFSDIFSSDYSSKISFKKGEIIHSYRDYEEKAPQIGAILEGTAVLEGPTNEGRWMINALIGQHALFGMESLLETKTAPELTEYRVRALENGTVLFIDREFLLNYLYANPQFFHLILDEVIVRYLFTSKNYKNINQAPIVKVTRILVEIIELLHLHQTEGSIELPVYVTQTFLADYCRSSRARVTEVLEELRESGLLLSKKPITISSHENLLDQVDSFQTGNGLLTR
complement(117147..117599)         PHAGE_Lister_LP_HM00113468_NC_049900: endolysin; LMMA_0114; phage(gi100033)          2.76e-38            ListeriamonocytogenesMYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHYAEKYGPMYDYGGYFINFGNSIDVYKKF
complement(117605..117940)         PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; LMMA_0115; phage(gi100035)     2.31e-24            ListeriamonocytogenesMELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIEMKKKLHRGM
118157..118585                     PHAGE_Lister_A118_NC_003216: gp61; LMMA_0116; phage(gi16798848)                      8.86e-18            ListeriamonocytogenesMDRKLLKEKQIQLIFQLEQEENRFIRKRLIEELEFFEALGDREKGLLTAEQKLLILTPSEYREYKRTKSDVQISRIIGVSRSSLAEWKRKKGLNRKKSQPVQQEMIDVLAFHLDKTKEEIGALPASAIECQYEAFVINEANN
118597..119013                     PHAGE_Lister_A500_NC_009810: gp62; LMMA_0117; phage(gi157325021)                     9.92e-28            ListeriamonocytogenesMQVLVLPENKDINYIKTVHEVKRFFADFERFRMITGLSKKPHLLRNGFLEEPQFEPVAFSARHNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQDVAVMMDLPYEIAQFKRIKKRAVLELATLMGILVRK
119291..119680                     Listeria protein LmaB; LMMA_0118                                                     N/A                 ListeriamonocytogenesMKSLSFMRVLEAVRTMLQEKGGLDVSIVMRNQVEMPTTMIEMIDQEEEESQTAWKEKYRFAIHHYTNEQDLAGVEKIDTLIQMGFILPEGYKLVAVRHCGKQNLVKENTLIHAKTSFEVSICRELKVKI
119693..120205                     PHAGE_Strept_315.5_NC_004588: hypothetical protein; LMMA_0119; phage(gi28876398)     1.01e-68            ListeriamonocytogenesMAFEENLYCDYTPGAAKAVAGKDVILAVFNAAGDKLLAVAGQQGLTVNRSKDSIEITSKDTVGGWKSKIGGMKEWSIENDGLYVADAESHKELAKYFESDSPVCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQMPGETPVAPAE
120253..120555                     PHAGE_Strept_315.5_NC_004588: hypothetical protein; LMMA_0120; phage(gi28876397)     3.05e-08            ListeriamonocytogenesMFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQVIETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR
120597..121001                     PHAGE_Strept_315.5_NC_004588: hypothetical protein; LMMA_0121; phage(gi28876396)     1.47e-27            ListeriamonocytogenesMDSEMNHDFDLEKQFAFFVVNFQMSKHDFEELTEVEKNFIMKEWENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISDNEAKEGKAWIDRIYGANGLRRPKNKEERGKMNGGV
120988..122856                     PHAGE_Strept_315.5_NC_004588: putative platlet-binding protein, minor tail fiber protein; LMMA_0122; phage(gi28876395)     2.48e-34            ListeriamonocytogenesMAESKSITFELNESVLTAQVGRLDEMAMVVERRFSELKMTIEDVGNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNLGSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKNHLGGLMSSIGGVGGIMGKLTSPMGLVIIGIVALVAAFTYLMTTNESFRNTVMSVVTQVAQLFGQLVASLMPIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVMSLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIGVIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIAFITNIFTTIVTIIGAAFQMVFTVASKIWNSIMSTISGIIDGIKAVITGISTTVSSVFNGVKRIITGVFDGIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGVEIGKIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSMLYTSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS
122853..123671                     PHAGE_Lister_LP_030_3_NC_024384: tail component protein; LMMA_0123; phage(gi658607676)     1.77e-48            ListeriamonocytogenesMSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGTDGVIPGMTQFKPFIFSAKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRYEVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDDLFYVFRENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGESFEYRKELQKTDVLLLNNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR
123681..124817                     PHAGE_Lister_vB_LmoS_293_NC_028929: putative tail endopeptidase; LMMA_0124; phage(gi971756894)     4.99e-54            ListeriamonocytogenesMDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKTKQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTISKQITAQHICYTVQDHVQYNVKSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGAILFADNKKLYFYDEKSWYVRTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENADKLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALTIAYKGKEPVSERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRIQTQIANQVKKASVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD
124807..125106                     uncharacterized protein; LMMA_0125                                                   N/A                 ListeriamonocytogenesMATEIRVLKNVDDTVFYPKTHVTAVEGLDSATTTTSGLMPASDKTKLNGIEANAEKNNVTAIDIANWNKKQDAILVSENGSNFKITVTNAGELKATKVE
125121..125696                     YhgE superfamily protein; LMMA_0126                                                  N/A                 ListeriamonocytogenesMKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYVYVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARSDAFGARYPVLRERLNQEQLNFSKKSTIQFDASTIISMEKQDIGLLTSKKISEAQTVCFLNISSLDEEADIVLEKTGETSFSDNLTSLVFAKIGTNERYQMEPVGA
125711..126190                     PHAGE_Deep_s_D6E_NC_019544: tail fiber protein; LMMA_0127; phage(gi423262345)        1.38e-05            ListeriamonocytogenesMTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVVSVNGKAGRVLLDAEDVHAAKKSHTHEVATYTTDGFMSSFDKQKIDQLVSPEAGVTSINGKTGIVDLFASDLDAAEINHTHAEATTTESGFLSIDDKEKLDAIQVIALETIKEVIE
126187..126723                     PHAGE_Lister_B025_NC_009812: gp19; LMMA_0128; phage(gi157325236)                     2.63e-13            ListeriamonocytogenesMTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKTIWDQKESTAGAEQKANTALNSAKDYVDTIGEGTVIFKGANLMGAGQSFKWDASKLKFGMTLLFSRYDAANNTPQDYYYHSVFLSKAQLVELAGKGILVQMPSTTYGDRKYLYVSTTGLSGHFDNSNYAAWALRQVTIM
126742..127164                     PHAGE_Bacill_phBC6A52_NC_004821: holin; LMMA_0129; phage(gi31415864)                 1.93e-38            ListeriamonocytogenesMEVILKFGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLASGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISILENFVRMGMKVPEVLKNLILIFDAKSGEDEEKHDKDMD
127145..127873                     PHAGE_Bacill_BCD7_NC_019515: putative cell wall hydrolase/autolysin; LMMA_0130; phage(gi422936032)     3.71e-45            ListeriamonocytogenesMTKIWIDAGHGGKDSGASGNGLVEKNWVLTVAKQLQTELVKAGFEVGMTRTNDTFYELSDRAKKANSFKADLFISLHFNAGGGKGYEDYIYTSVPAATVEIQKIIHKNIITKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDSTDALILEKKAYQTDYCLGIVSAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKTLNLTTTKGVPGSWVLKTEVNTGKR

#### region 2 ####
2185051..2185063                   attL                                                                                 N/A                 CAAACAATGATTA
2187262..2188098                   PHAGE_Staphy_SPbeta_like_NC_029119: integrase core domain protein; LMMA_2147; phage(gi985761151)     2.61e-62            ListeriamonocytogenesMNPAYFVLLVEELKTKYLVKDICQILQVLLSTYYRWKKKDFAQSSLEKKIGQLCKAYQFTYGYRKIAALMKQEEQVGINKVQRIMQKYQWQCQVKVKKKNRPGSAYYQTENHLNRNFQASQPLEKLTTDITYLYFGDCRLYLSSIMDLYNGEIVAYSIGEKQDTELVLDTLNQLSLPEGSLLHSDQGSVYTSYEYYQCCKKKNVIRSMSRKGTPADNAPIECFHSSLKCETFYHKTAYKYAKSIVIQIVKDYIKYYNEERIQQKLGYQSPINFRKQAA
complement(2188162..2188896)       Transcriptional regulator, GntR family; LMMA_2148                                    N/A                 ListeriamonocytogenesMVRKLNKMNDASPLYAQIADDLREKIQSGIWKTGDKIPPELDLCELYNVSRITVRKAIDELVRENLLYRERAKGTFVRDWEEAEDEHFTLVRSFTNEMKELGKKAATLHAEVEVINADKKIALQLGLAVGDKVLQVKRLRGTKDLAFALFISAIPYRQAYSLQAEDYYGSFYEYLKGFGIVVNQEKEYIEAMLPNREVQEALAIDKQEPILKRVRMTKQKESDFREYSECFYVGKHYRYYIDFE
complement(2189011..2190027)       PTS transporter subunit IIC; LMMA_2149                                               N/A                 ListeriamonocytogenesMKEYFIDRSYKASMGIANAVLVTLGIGLLLQTIGQMTGISFLATVGAIGKTMLIPGIGVGIAMCLHANTLVTISAAASAVIGGGAVATLAGGGVAITSGEPVGAILAVIVAVWTGKRVTGKTKFDMILIPGGSLLAGGLSGILFAKIMAPILASVSLGISSLIGGSPLISSMIIAFVFGLLILSPASSAALAIALQLDPTASAAALIGCSVQFVSFAVLSYRDNNWGAFFAQLICTPKLQTPNIIRKPSLMLVPLLTTLIAGPLGVMVFHIQAASEVAGLGLCAFVAPLYLIANYGFSTLAAFILVAVVLPGVIALVVRPFLIKKERLKTGDLTIELQ
complement(2190096..2190950)       PHAGE_Klebsi_ST437_OXA245phi4.1_NC_049448: tail assembly protein; LMMA_2150; phage(gi100053)     2.05e-08            ListeriamonocytogenesMDEALRTYIRVVELQSFTKAAEELHISQPAVSLQLKKLEELYETELIYRQAKKFILTATGEILYHRAKQLEGLYKQVEDEISLYHHHLKGRLRIGASFTIGEYYLPEVIAKFHALYPDITIELIIENTAKIADKVELLQVDTGLIEGQVSKKDLEISAFSDDEMCIVGRADGSLTEIEQGATWIAREEGSGTREYLDHVLSTNGWNVAEKVVAWSNMAVKQMVLEGMGYTVISKCVVQTEITAGKMQTFNESGSLMRKFSVLKNRQRLENRIAETFLTFLKENQ
2191056..2192063                   Putative membrane protein YeiH; LMMA_2151                                            N/A                 ListeriamonocytogenesMSQILFKTKTFWYGIALTFCIATLSYFLAKLPFLMILGQLVTAILIGIIIRALFPVPDKWFTGIQFSNKVILRAGIILLGFRLNLVDIYHAGWRVFLIAALCLSFGITIVYFLAKLFGVDKKLAILVACGTGICGAAAVVAISPQVKADNNQTAVAATIIALLGTIFTVIYTLIYPILPLGPDGYGIFAGATLHEIAHVIAAADPGGSSAVDMAVIVKLTRVALLVPVCFVVAKMVNAGTKNRFSWAELPVPWFIFGFLATSAINSFGIIPTSVTDFLVICAYFLIAMSMGGLGLNVHLPSFGKMGGKPFAAALIGSVFLSAFGLALVLLFHLAG
2192119..2192760                   DUF1361 domain-containing protein; LMMA_2152                                         N/A                 ListeriamonocytogenesMTKAIWTCRAFLLGYFLVLHFTADTYTFLILNVGLAYIPFEIAVFLTKKPRVWWIFWPLGIVWLVFFPNAPYLLTDLLHLQRLEIYGAEGVLSTAPWLWRHFTYIIVGVFFGLFIGFWSFAKMLAEIRRRFNWTSLLSYQLLLIGLILLSSYAIYIGRFSRLHSIHLLTQPIDSLQIMFSVFHWPFWNFVFYFSIIQYVIYTLFSRFSSSLKN
complement(2192810..2193127)       PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; LMMA_2153; phage(gi100062)     4.77e-36            ListeriamonocytogenesMDFKEYQILANRTAATHEQALTNYGLGITGEAGEVADLIKKYAFHGHDLDKESLTKELGDVLWYVSQIAKWADISMETVAELNIEKLKRRYPQGFSTERSKLHID
2193326..2193502                   transmembrane protein; LMMA_2154                                                     N/A                 ListeriamonocytogenesMKLAGLVLLLIGLIGFGFSFSITGLIGFGVCIISIILVIAGIFTMIRSKKRRKRSYSY
complement(2193544..2193843)       PHAGE_Pseudo_MP1412_NC_018282: hypothetical protein; LMMA_2155; phage(gi399528994)     8.83e-06            ListeriamonocytogenesMKQLQAEITAFLKERDWLDQYNHPKDLAISLSLEAAELLECFQWKTDEIALKENREELLKEVADVLIYALQIAESMGADGEELVRMKLAENRRRTWPKK
complement(2193950..2194276)       PHAGE_Lister_LP_048_NC_024359: thioredoxin; LMMA_2156; phage(gi658310694)            7.85e-17            ListeriamonocytogenesMTSIEIKSPEEFQAHINGEELVYVDYWKDNCPNCKMLDLSFAEFKNSEIASKVKVLKVKLEEMGENFFFDRDVQQTPTLVLYKGGEEIHRLNGFIPPNKIEEAVSLNA
complement(2194273..2194710)       PHAGE_Lister_LP_064_NC_041862: hypothetical protein; LMMA_2157; phage(gi100161)      1.36e-26            ListeriamonocytogenesMRILLAYDSLSGNTKMVADEIEEILISEGHEVVSFRVSPLAEYPLDEDFDLYVLGAWTVDYGRTPPDMKDFIAELAVKPKNVAIFGTGETQWGMDFYCGAVDRMAKYFGTSYPTLKIEQMPHTEQDVADIDNWVKKILALRSGIK
complement(2194707..2195756)       PHAGE_Lister_P100_NC_007610: tail length tape-measure protein; LMMA_2158; phage(gi100057)     0.0                 ListeriamonocytogenesMANQKEQLTRIKILEPLFPNRSTSIINGETSGILNWNDIPYPSFYRAYKELSTNYWIPDEVDMKSDAKQYPALSEQEKYAFDAIIGLLATLDSPQTRFIYNIAEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPTIIKRNEPIMDAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISFINRDELAHSKFISEVIRAILGENPELQTEELVEYTHEAFRHAVELETEWSEEVLQGIEGIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRNSSYKKTNMDNGFDDL
complement(2195812..2198103)       PHAGE_Lister_WIL_1_NC_025440: ribonucleotide reductase; LMMA_2159; phage(gi725950106)     0.0                 ListeriamonocytogenesMKWGLQMTTYIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLEDYKRKVFNFVEKKEDYAADELVDYLIREAEARTDIHIPEWEHFAARLYLNKLYKKASKNRFYNDDDKYGSYVGLQESLGERGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNGLYLLATRYLATDSERNVYELPQERWLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSTGAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIESFLDLRLNNGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDFYDESKGEGTFREKYEELVADETISKKIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNPNKHEGMVYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVVAEEGTLERLIEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIAWDSEEAEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTGEYFARRNYNSPEWQELAKEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDLNLSTYPYYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNEGLKTTYYVRSNDIDVEECEWCSS
2198334..2198346                   attR                                                                                 N/A                 CAAACAATGATTA
