gi|00000000|ref|CP106749.1|  Neisseria gonorrhoeae strain 10723 chromosome, complete genome. 2192371, gc%: 52.51%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(466081..466620)         PHAGE_Salmon_vB_SemP_Emek_NC_018275: hypothetical protein; NDM80_02455; phage(gi399498806)     1.40e-36            NeisseriagonorrhoeaeMLNAYDVADFFLSPFEEEDGEQISNLKLQKLLYYAQGYALAILNRPLFAENIEHWQHGPVVPCIYRTYKKYGGSPLPAAHIEPDKYADEELVVLNRVRKEQGCYTAWALRNKTHQEAPWIQTRQGEVIGIALMGEYFRHALPQTDYNFNLEKLKTAVEDSFVSVPHFNGADDLEKWLEQ
complement(466780..467496)         PHAGE_Entero_phi80_NC_021190: CI transcriptional regulator; NDM80_02460; phage(gi824479623)     6.55e-41            NeisseriagonorrhoeaeMEKHETVIRLFDAAKTKGKNTPAETARLLNISQQTLKNWESRGISAKALPEVAQVLGVSETWLRTGEGSRTAPVLINPDLPHEVKDIHRPMMWSSNDPLPDDDYVFVPYLKESCFKGGAGAYEIPDYNGYRLPFGKSTLRRKGINPDNVFCCTLTGDSMEEKIAEDAAIAVDTGETAIRDGKIYAFAQDGMFRVKYLIRQPGNSVLIRSHNSGFYPDETAPLDSLSVIGRVFWWSVLD
467877..468104                     helix-turn-helix domain-containing protein; NDM80_02465                              N/A                 NeisseriagonorrhoeaeMNQKQTQCKQIVDYIRNKGCITSLEAYQNLKVTQLAARITDLEGRGFVFAKPKYKVGNCKNPVAHYSIAKSGIEP
468222..469286                     PHAGE_Haemop_Aaphi23_NC_004827: putative DNA replication protein O; NDM80_02470; phage(gi31544014)     2.79e-37            NeisseriagonorrhoeaeMMKPSESLRAAGRPIAYYPKLAKPLGGVNAAILFGHFFYWNDKTQYESGIYRTAEEIEIETGLSVQEQRTARAKLRERGVLIETEKRIEHRIYYKLNLDAFDDLMLQHSGGGESTAPKCNINSPELQNQHSGGGESTAPKCNINSPELQNQHSGSEESTAVIRTEDLTEDLAVYTPLPPNAGNGKGGLNADAFVSADAETCGRETGEPTSPKAESDSNGNGGLSGKPKNANVPRRRKTHGVPLQEIADLYNEVLGGRLPSVQVLNDTRKRAIANRWCEMLGTAAPNGKVRFGDKETGLAWFAGFFRKVAMNPFWMGENQTGFAVGFDWIFKAGNFVKILEWHPPKTNQAARGRA
469283..470644                     PHAGE_Marino_P12026_NC_018269: replicative DNA helicase; NDM80_02475; phage(gi399528354)     6.86e-71            NeisseriagonorrhoeaeMNRIEETEAVQSLASVGAEQNILGGILIEPTAIARCAILTPEKFYQAQHRIIFRALLDMAAANEPIDIITLNDKLEARGEAENAGGLAYLIDLNQNTPSAKNISRYVGIVNDRFVERGLLKASAAIEKIAVSKDGGTVAEKLSKAADELAAVGKDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGMTGGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNIPMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGLDLLVVDHLHIMPRAGRDEVAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIRGSGAIEQDANIIIMPHRESYYDGNENPSIAELIIAKNRDGETGTVVCGWKGQFMKFEEEPDLAWQAPKHDEYDPYSV
470661..470912                     hypothetical protein; NDM80_02480                                                    N/A                 NeisseriagonorrhoeaeMRETCFYCNHADFKTNTGTPVRGFAKCAKARNAEERAKHYPRTNPCAAGAFQTASGAAVAKRTAALGEYPGIPEIENRVKTQI
470926..471420                     PHAGE_Burkho_BcepSauron_NC_049851: hypothetical protein; NDM80_02485; phage(gi100185)     1.38e-08            NeisseriagonorrhoeaeMTVQNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRAGAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEAGRAPHPESPMPPETAGGGI
471597..471746                     hypothetical protein; NDM80_02490                                                    N/A                 NeisseriagonorrhoeaeMDTLLSIITALSFAGAATLAVWLLVEAADAVLRRKRDGKGEDDFDGFGY
471786..472055                     hypothetical protein; NDM80_02495                                                    N/A                 NeisseriagonorrhoeaeMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
472046..472426                     PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; NDM80_02500; phage(gi148609431)     3.71e-08            NeisseriagonorrhoeaeMRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGAGAMPSEGAVAVYVRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVAGGGLAVEVGELDEK
472693..473100                     hypothetical protein; NDM80_02505                                                    N/A                 NeisseriagonorrhoeaeMNQQEFEFMNDLARAFERRYRDTRSLNRCLSIEGRYMGEEACPHKPEIGLRYGEDAMFLTLQAWAKVDAPQQEAVRISFGIGAKSQAAYEERLQAEIRRRGEGPLHLQTDLGLAAWYRAIRQAAGNDFDLLFEKV
473191..474351                     PHAGE_Coryne_Juicebox_NC_048070: holin; NDM80_02510; phage(gi100034)                 6.88e-29            NeisseriagonorrhoeaeMNAAAVSAVFKERIASHAEHVKKVAHICTTEETTKQALILPLLDILGFSAFDPNKVRAEYQADFPGAKSGERVDYALFCNGAPVMFIEAKSYTENLSNHCPQLSRYFNATPEIAICAITNGREWRFFTDLSNKNIMDSEPFLTVDVTMLNENDMAQLYQFRHDKFQPDALRSLAEESIYLTAFTESITESLKEVDLDFVRYVAGRANIQRQFTQRYLESIRHIVKQAVQNTVSSMVVSGLSAPKVQEEAAPVEKEQEDPTAPIIDPENNKIVTTYSERRLFDLVKSILPDDASIEAKDTESYFGVLVDGKSNRWILRYFDNKQRPSVIFPIELEESDISNIERCGLEVSGNQVIIDTPENLLRVAWLVIDSYRFCCDDENFKRKPK
474633..475502                     PHAGE_Haemop_Aaphi23_NC_004827: putative antirepressor protein Ant; NDM80_02515; phage(gi31544021)     5.31e-59            NeisseriagonorrhoeaeMNVIQSFNFNTTSPVRAFEKDGLTWFVAADVCKALEIQNPTQALEKLDDDERSMFNIGRSEIHGGGGNVNIINESGLYILILRSRKAMEQGSTAWKFRKWVTSEVLPTIRKTGGYQVGQKTTADDRTGLRQAVAALVGRKGIDYSSAYSMIHQRFNVEAIEDIPVEKLPEAVAYVHALTLHTGLTGEVLDREPLPAPQPALPISGNALYDLAVAVSYGARAIQMGRDVSLPLKQLGCRQAVTMWTVWAETRSRLKAAANALEALSAHADAEHAEKIRPILPEIRNLSAV
475795..476244                     PHAGE_Entero_Sf101_NC_027398: terminase small subunit; NDM80_02520; phage(gi849122263)     6.12e-31            NeisseriagonorrhoeaeMSGTKRKLGRPTDYTKDMADKICEKIANGRSLRSICAEDGVPPMKTIYRWLEANEEFRHQYARAREKQADYFAEEIIEIADSAQAESAAVSKAKLQIDARKWAASKIAPKKYGDKSELDVKSGDGSMRAAVRLDAEEYRKIAEDVLRRV
476390..477727                     PHAGE_Acinet_YMC11/11/R3177_NC_041866: minor tail protein; NDM80_02525; phage(gi100056)     0.0                 NeisseriagonorrhoeaeMFYQRRGYVWQRANHHAPICNALERVFNGETKRLIINIPPRYSKTEIAVVNFIAWAMGRVPDCEFIHASYSAALAVNNSVQIRNLVQHEEYRAIFPDLALAGESGHHWKTTAGGVMYATGAGGTITGFGAGRHREGFGGCIIIDDPHKADEARSEVRRQNVIDWFQNTVESRKNSPDTPIILIMQRLHEKDLAGWLLDGGNGEEWEHLCLPAIQEDGTALWPEKHDIETLRRMEQAAPYVFAGQYLQKPAPPDGGTFKPDNLQFVKALPAGNIRWVRAWDLASTANGGDYTAGGRLGVTEDGRYIIANVVRGRYGADERDRILRNTAQKDGVKTKISIPQDPGQAGKSQTLYLTRQLAGFSVSAGPESGDKVTRAGPFAAQVNIGNVMVLDDGTWDTDALIAEMRMFPNGRHDDQIDCLGRAFGELLDTRTGMIDFLRSQVEAVK
477724..479871                     PHAGE_Thermo_THSA_485A_NC_018264: hypothetical protein; NDM80_02530; phage(gi397912638)     3.72e-56            NeisseriagonorrhoeaeMSKKTPLSQGFIARVAAGVRYAFTGNADGWFDAGEPPAPAAQQAEGRRFDYEPFYNVGHSKPREREAVGFAQLRALADNYDVLRLVIEARKDQMECLKWTIQKRDVESTEDDESQRKDRKVDEAVAFFRSPDKEHTWADWLRILLEDLFVIDAPCIYPRKTLGGGLYALEVMDGATIKRVLDNTGRMPLPPDTAYQQILHGMAAVDYTADELIYRSRNNRSYKVYGYSPVEQIIMTVNIALKRQVHALEYYTAGSVPDALVGVPETWSADDIRRFQEYWDLLLSGETAQRRKMRFVPGELSRNFRETKQPPLKDVYDEWLARVVCFAFSVEPTPFVAQVNRSVAETSREQSLSDGMGSLKNWVKALIDDVLARYMDMAAYEFVWKGEESLNPKEQAEIYAIYKNAGILTADEIRAELGKEPLPGQGQPEPDKQDGRKPEEPPNQGAEKLGKSESPMSEDESAALIEAYLLTRIDGLAEQIAALIEGAAVDWQAGDLAAELSRAAGVVANGLDFGDWSGLSDVVEPIIRRVAEDGAVAALLRVMPEPAAGMVTNIRSRAVKWAHERAAEMVGMKRAGGGLVRNPAAEWQITEGTREMIRAQVAEAMRNGDSVQELAGRLKESHAFGNARARTIARTETAMADGMGNLIGWEGTGLVAGKQWITAKDDKVSDVCNANGGMGVIGLHEPFSHGALTIPGHPNCRCAVVPVLAGDMPES
479939..481096                     PHAGE_Thermo_THSA_485A_NC_018264: hypothetical protein; NDM80_02535; phage(gi397912637)     8.12e-24            NeisseriagonorrhoeaeMTKLYAQIAKTEAQDDGTVKVWGYASSEAVDSDGEVVAAEAMKAAIPDYMKFGAVREMHGSNAAGTAIEINVEDDGRTFFGAHIVDPVAVTKVKTGVYKGFSIGGSVTARNDLNKSQITGLKLTEISLVDRPANPDAVFTCFKADKPKDEAGAADKDGKPSDKPTEEEDENPKDGDKGPKTEDKGDKDADKKDEAGKSASVNLSESEIAALKAVLAKADKPKGGTAAKSMYQVKSPADVLMSLKWLVEDASYDNIDEAVTAQIKESAAGLAESLKALAASEADKPADGLAAKAGKSGDLAKAESADELAKAQDALKKSNDALAKAQAEIESLKKQAVPPKGSTKAISKAEDNGEDPLKGFQPIVKNDGTLDDVATLIKAKQTGRL
481137..482636                     PHAGE_Thermo_THSA_485A_NC_018264: hypothetical protein; NDM80_02540; phage(gi397912636)     4.79e-32            NeisseriagonorrhoeaeMNVNQLTQETIELMKSAQAGGGPPDKGFTQPAGFTAGLQTYDLSAPSQKLYPVLTPLRNRIPRVGGGRTIGSNWKAVTNINVGNQRAGIGEGRRGGVINHETVERNAQFRAIGLENQVTFEADYAARGFEDVKALAVAQTLQATMVAEEMILLGGNTSLKAGVTPTPTAVVSADAAGKISVSTLSVICVALGLQAYWDVAGANNGATGQSPNIKTAQVPAKITRRNADGTTDTFGGGSARKSAAASVSGIEAGKKVTAVIPAVRGAVAYAWYWGAAGSEKLGAVTTAAKVEISADAEGTQTAASLPSEDNSTSILEFDGLLTQIALPDSGAFWSDNKGGGLTSDNAGGVYEFEEAFAHFFTRYRLSPDTVYVNARDLAALTKLIIGNSGAPLIKLNVDVNNTANIRAGVVVGSYMNKITGDDLNIVVHPNLPAGTYLFYSSRLPAYVQGVGNLLQVRTRQEYYQIEWPLRTRMYEYGVYADEVLQGMFMPAFGMITNVG
482643..483005                     hypothetical protein; NDM80_02545                                                    N/A                 NeisseriagonorrhoeaeMPSENQTAFSFGDFEMTVKLKAPEGFTDVSFGSQSYAADENGIVEVPSEAAEFLYQFGFGNVASEPAEGPEKAKRGRKPKTGQPAGQSEPAEAAEPAEAEAEAAEPAEAEAEPAEAEKAE
483008..483538                     PHAGE_Strept_phiSASD1_NC_014229: gp29; NDM80_02550; phage(gi298103494)               9.28e-07            NeisseriagonorrhoeaeMAAPVSLEEFKQRIGVEHDRRDDFFLSVIDGVSAAAEAYIGRSLLAADYVGRYDGNGKDRIVLDNYPVLSVSSVKINGADAGGWEFDNWLLMRPEGFARGLKNVEVSYRAGYERMPADIREAVMIIAVQRVNEIEGKGVRSKTLAGETVAFSTFGNSGGMPPSAFAILNEYKRKGV
483538..484020                     PHAGE_Vibrio_12B12_NC_021070: phage virion morphogenesis protein; NDM80_02555; phage(gi481019160)     3.32e-07            NeisseriagonorrhoeaeMLKMEFIGGGILAAVFKAYAADVQDAVVKSVGRSALRLQSEVVLNRLSGRVLGVRTGDLRRSVHQRVNVSGNVVSGEVDTNVRYGIAHEYGFAGSVNVKASLRQVRQAFGKPLKPPRYVNVRAHTRDVKLPERSFLRSALRDLTPKFADDLQKSIGKVLK

#### region 2 ####
480477..480489                     attL                                                                                 N/A                 AAACCGAAGATAA
486509..487363                     PHAGE_Caulob_magneto_NC_019407: putative tail protein; NDM80_02585; phage(gi414088603)     9.38e-20            NeisseriagonorrhoeaeMKAATKELIDLLHGGDEFQMADLYTITLSGGRVLRHTGADMPVVWDGQAYGAHELVIKRGATRTAVGLEVDSNTLQISAAPDYRLEGLQWAEAALGGVLDGARVRIDRVFFDAGLRPVGAVNIFSGRVSDVSGGRSSVKVDVKSDIELLNVSSPRNIYQAGCMRTLYDDGCKVNREKFTVNGRVTENSRTGTVLKHNLTQPDGWFSQGVIKFAGGRNAGLSRTVKAHGGNTFELALRLPYPPQAGDAFKVYPGCDKRRDTCKDKFDNIVHFRGFPFIPSADTVV
487365..487796                     PHAGE_Dinoro_vB_DshS_R5C_NC_041921: capsid decoration protein; NDM80_02590; phage(gi100066)     1.49e-15            NeisseriagonorrhoeaeMPSETDLRARIVEEARSWLGTPYHHHAMVKGAGVDCAMLLVAVYGAVGLLPEGFDPRPYPQDWHLHRDCERYLGFVTQFCRETESPQAGDIAVWRFGRSFSHGGILAGGGKVIHSYIGRGVVSDDIGQAELIGRGVRFFTFSF
complement(487824..488102)         PHAGE_Vibrio_vB_VchM_Kuja_NC_048827: terminase small subunit; NDM80_02595; phage(gi100071)     1.34e-18            NeisseriagonorrhoeaeMESQTFASVFDALCDTPAQAANMRLRAGLMMHIADTVRENGWTQKQAAEHCGLTRPRINDLLNGKIDKFSLDALVNINAGLGQCISLSFAPA
488342..492487                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: central tail hub; NDM80_02600; phage(gi658311483)     6.07e-11            NeisseriagonorrhoeaeMGGKSSTVTSAEERILSLQVQRSSQGLTLPVIYGRTRVAGNLIWYGDFVTIEHKAVTRQGGKGGGGVKQVGISYTYEAAVMLALCEGEIQGVGRIWRDKEKFDSPAQLRLTLMRGGDEQPLWTHLQQAKHQGQALNYSGTAYLCSPNYELTKSAQIYQHNFEVIGKSGYSGNIPDANPREIVLDLLTNQRYGCGFPSQNIGDTDRYSNYCRAVGIFLSPAYTEQGEAQRNISELLEQTNSAAVFSQGRLKIIPYGDGSHSGNGAVYVADNKAAYDLTDDDFIVSGAQDPVKAGRKTNADAFNQIQVEYLDRDNDYNVAIAEAKDQANIEQYGLRPKDAVRMHGICDAKVAQKVAQQLLQRALYVRNEYEFKLGWKYCLLEPMDIVTLTDAGLGLNKTPVRITEIEEDGEGVLSVKAEDCPAGVYTVSEYPTQPSSGYSADYNVSPGNAHVPVIFEAPLQLTGGEPQIWLATAGGGMWGGAEVWVSADGDSYTRVGAVNRKARFGALTADLPDGAVFDRTNTLGVEISAGQLTGGTEQDSRDLLTLCYVDGEFLAYADAELKGVGRYTLGNLTRGAYGSAVNAHAAGSRFARIDEALFKYAVPRNWIGRTVWVKLVSYNVFGGGIQDLAEVPAYSYTIEGAPLGQIQNLRLTSSWAYGKEAVIAWDKLDGADTYDVEIYAGGSRRRLRAVDGIVDNSYTYTQADMKADGGQVRGIVFKVRGRAVTGKTGNWAQIAAQNPQLQALQGISIDSGLRQAFFTCQKPDEEDFAGIIVWVCENAACPAADANKAYDGAETFITIAKCGGKPLEKGKTYYLRAAGYDSFGKDNLKVSGSISFTVYDVSATDLSESSLNQALRDKINLIDGNGAGSVNERVEAVRSTADGNAAAVQTHARSINGLEAQYTVKVDANGKVAGFGLATTPKNGTPESKFIVNADRFGIGAAGKADVFPFVVDTQKNRVGINGELVVNGKAVVDKLNAGDIHGGKIAADTLDANRLKAGSVTAREIGAAAVTADKIGANAVTADKIQVADLSAVSSNLGSITGGSLNIGGGNFTVSSDGILTADNAVIRGRIEADSGYFNGTVRASSVEGDVLRAHRLRWTEGNVWVLDLDKDPLPRVLIPNFYVVSETFGNNRVQAKLLLNGGVLAPREVRETENYTNYIWRGRTFGRYEDLPPRARGGGDYTEQSGSRYRTRLEYQIQVIPAGKPVSLKLSLASHESVFSPFVSVSYLAQSDYEYKQLLGRMVWRTFAESFRYDSKKQIYLGGDRRVHDYQNQMYKHWNAYGGLLQLPDDIYGISFEYRPFTNADWSTMLAFDRSDKFVVVKKYRGHAPQQYSLFQEEFNTAVPKSNLLFFVEHWWQYIELRNIRVLIPESRENEVWQVG
492599..492904                     PHAGE_Burkho_AP3_NC_047752: hypothetical protein; NDM80_02605; phage(gi100027)       1.25e-06            NeisseriagonorrhoeaeMIEDKKIVALNFAVEDGMTGASAAYHVVEHIGADYRNGYVTATLNGYVSENAFKSGKRYLLARTLDFQETDITAPDPGWVYRKALEGAAGIPKDAQPVYAE
492975..493445                     hypothetical protein; NDM80_02610                                                    N/A                 NeisseriagonorrhoeaeMLRVLLNRRFLPAGFQAWLFGTATRVLEAVSGLGLSGYAAVFALAPDEIYAWRIYYKFQDIPEAWTVGVLAAAGLLQTALLFARGVRACVASAYLLLFSGFVWFLVSVAFWGAYPPLNTGMVVPPLLAFFCALAGNNALRFLFSAQKSRGLADEGS
493446..493778                     hypothetical protein; NDM80_02615                                                    N/A                 NeisseriagonorrhoeaeMGFLQFGLLFAAAGGVLGAVWASLQERGRPVQAVLEAFISAIAAAAAAERFVPLDQAWTCAAAGVFAGMMTGHALDTVRALAPKVLRGYLGGLAEKLTGVKDGGSSDGKD
complement(494146..494493)         PHAGE_Strept_EJ_1_NC_005294: transcriptional regulator; NDM80_02620; phage(gi39653708)     2.91e-11            NeisseriagonorrhoeaeMYIPERGDIFHLAFDPAAGTEMKGGHYAIALSPRAYNRATGLVYACPISQGRAAAARSGGMISTLLGAGTATQGNVHCHRMKALDWKIRRAAFRETVPDYVIEDVLARIGAVLFD
complement(494493..494729)         AbrB/MazE/SpoVT family DNA-binding domain-containing protein; NDM80_02625            N/A                 NeisseriagonorrhoeaeMLRLQKWGNSAAVRLPARLLTALNAKIGDALETEIRNGELLIRPVKRYRLSDLLAETEAAPPRAEGWEEMPDVGQEGV
494936..495475                     PHAGE_Pseudo_vB_PaeS_SCH_Ab26_NC_024381: endolysin; NDM80_02630; phage(gi658311460)     2.01e-62            NeisseriagonorrhoeaeMKELKWIEEARKYLGAHEKVNGKSNPVLLAMLQEMGNFNQEQKAWWKETDTPWCGLFVGHCLGKAGRAVIRDWYRAKAWSMSGLTKLEAPAYGCIAVKPRRGGGHVFFVVGKDAEGRILGLGGNQGNMVSIIPFDPADIDGYFWPSKLIGGKPVPSSPAEGRYRLTAAAATGAQGAGEA
495475..495633                     hypothetical protein; NDM80_02635                                                    N/A                 NeisseriagonorrhoeaeMMNPTEFLKARIAEWEAKSKEAGGNADFKAFEFAESEIKNYKAMLKTYERPD
495617..495958                     PHAGE_Entero_vB_KleM_RaK2_NC_019526: hypothetical protein; NDM80_02640; phage(gi422936900)     1.62e-06            NeisseriagonorrhoeaeMNGLIKNPKLIAVSVCAVFVAGAWQYDRAAQYRRGYGAAVSEVSERLKAAAVEHAEHARKSSAAYQAQKAAREEKERVRYVQTLKIIEKPVYRNACFDADGVRELNAAVDDGG
496429..496578                     hypothetical protein; NDM80_02645                                                    N/A                 NeisseriagonorrhoeaeMNAEGFCEKQTACRPDGRRNAGDRADLKAFEFAEQELANYREMLKRYAV
496608..499655                     PHAGE_Mannhe_vB_MhS_1152AP2_NC_028956: tail length tape measure protein; NDM80_02650; phage(gi971760502)     6.75e-75            NeisseriagonorrhoeaeMSDLEAKVRITVENHTKQGFDSAAADADKAAEKMRSSGDNAAKGFKAAIDSMHETMRNLHADVKAGFEAAGNQAQQASEKVRAEVGKIGSGLSGLTKLLAGLATADFAKSVLDTADAMQSINSQVRQVTSSETEYLAVQQQLLDTANRTRASLESTANLYVSTSRALKDYGYTQQEILKFTEATNNAMTIGGVGAQQQAAALMQLSQALGSGVLQGDEFKSISEAAPILLDTIAEYMGKSRDEIKKLGSEGKLTADVIFKAISGASEKFGEQAAKMPVTMGQALTVFSNNWQSMVSKLLNDSGTMSGIAAVIKLIADNLNLVVPIVAGFAVAVAAAVAPTLALNLALLANPFGIIAVAIGTVVGLIAKFGDEIDVFGGGWSNLSDVIRAVWQIITETVGEAVGTVKSWFDGLTGRLNEGAGGWPSLFGRVMSVISSAIGAYVNVYINIFATGWMLIKEAANDMPQFFANLGKAIGNVFISAIERMINKAVGMINSMIDFANKAASMAGISGIGKLNKVRMGRMDDGGLGERIHDSLTKDRAGAMANAVRERAADIHEADALKGRGGGGHAKTARKKPGANQGGGKGGKSRSGGPGAAKDPMQAWEGEIKARKLAHREMQRETLAHQEWDLAREAEYWRAKLATVDANGKTGVKIREKILTLEDQLSKQSTEAKMNQAAEWEKLDKHKLEMEKDAADQALADGRISQLERLDLEIEFENRRYRIAYDALQERIALAEQDPAYSQAAIGKLKAQMGELGRGHERTQAKNEGKRENQRRKDAPNVMEMLQDGGKNVWQEAQQQMGQAFTAMLARAQNFRQAMNGFFKSMGQTFIQEMVTKPLTGLMRRMVQESAIYKMIFGTKETLETAAAAKTAATKATETTAVVSSNAVQAASGAAASQAHIPYVGPILAVAAMAAMMSAVMGLMGGGGGSQTTTTTTRIPSAAGGWDIPAGINPLTQLHENEMVLPAEHAQTIREMADQQGGGSTVIINSTGGDFIHKNDLAKLLKQMKRDFKFV
complement(499715..500194)         DUF4760 domain-containing protein; NDM80_02655                                       N/A                 NeisseriagonorrhoeaeMTDNLIQIATPILTVIGVFVAAYGIMRNTENAKKRATIDMIMAERNNAALQEAITIVNGLAKTDGCILATYTSDTPDKKKDREAILTVLNQREFVCAGVLGGALHEKMYKDFEYSMLLRDWDNLSSFIFEIRRIRSAPTAFQEFEAVARKWKKKPLKTK
500461..500473                     attR                                                                                 N/A                 AAACCGAAGATAA
complement(500533..501522)         PHAGE_Mannhe_phiMHaA1_NC_008201: integrase; NDM80_02660; phage(gi109289985)          3.96e-101           NeisseriagonorrhoeaeMATITQRNGKWRVQIRMKGVSRSATFERASDAKAWAARIESQIMDGIQGNAPRNTIFADLIRRYLSEVTPSKRGAREESYRIGRALKTPLAKVRLADLRPQDFADWRDQRLQEVSPTSVGRELTTLSAVCEHAMKEWGLLRENPVRKISKPKKSRARTRRPTEQEIADICAALLYRPNEKPKMAVQRVAVAVLFAIETAMRAGEICGLKWADVNMRRRIAHLPITKNGDSRDVPLSLRAAELIEQLRGIDDTWVFSLDAKSLDVLFRRARDNCGIQGLHFHDTRREALTRLSKKVPVEVLAKISGHRDLRILLNVYYRPDMADIAKMLD
complement(501782..501970)         hypothetical protein; NDM80_02665                                                    N/A                 NeisseriagonorrhoeaeMADGRKGFFDAIIKINIFFFPVKTPTLGAANPIAGGSTRFRFGAEQMAVLYVPFCVLKHIGR
502211..503245                     PHAGE_Prochl_P_SSM2_NC_006883: phosphoribosylaminoimidazole synthetase; NDM80_02670; phage(gi61806048)     9.09e-82            NeisseriagonorrhoeaeMSTSLSYRDAGVGIDAGDQLVEKIKPFAKRTMRPEVLGDLGGFGALVEIGKKYQNPVLVSGTDGVGTKLKLAFDWDKHDTVGIDLVAMSVNDILVQGAEPLFFLDYFACGKLDVPRATDVIKGIAQGCEESGCALIGGETAEMPGMYPVGEYDLAGFAVGVVEKENVITGRGIGAGDVVLGLASNGAHSNGYSLIRKIIERDNPDLDAEFDNGKTLREAVIAPTRLYVKPILAALEKFTIKGMAHITGGGITENVPRVLPKNTVAQIDAESWELPKLFQWLQKAGNVETQEMYRTFNCGIGMVVIVAAEDADAVRSFLSGQGETVYRLGCIRERQGNEHQTQVA

#### region 3 ####
723637..723648                     attL                                                                                 N/A                 TCAGACGGCATT
725120..725503                     PHAGE_Haemop_HP2_NC_003315: hypothetical protein; NDM80_03705; phage(gi17981828)     2.04e-17            NeisseriagonorrhoeaeMIYYPAVLFQDPDQSNWGVIIPDLPGCYPVGDTVADALADAKAAAMFHLEGLLQENLPIPEAQSIEVNRDNPDYADAVLWTMVEADDAALTGQVRFNVSWPQHILNRVDACTAARHETRAVFWRKPP
complement(725965..726138)         hypothetical protein; NDM80_03710                                                    N/A                 NeisseriagonorrhoeaeMDVLIGKVVEKPARLAVAVDAIIGKRQQLEDRLNTIETAPALDALEREIKEWALNVG
complement(726141..726578)         PHAGE_Haemop_Aaphi23_NC_004827: putative tail fiber assembly protein; NDM80_03715; phage(gi31544054)     1.65e-18            NeisseriagonorrhoeaeMTIYFKNGFYDDTLGSVPEGAVAVGGEEYAALFAGQAQGGQIAADSDGRPVLTPPRPSEYHEWDGKKWKISKAAARFANSRFAKQKTALAFSLAEKADELKTASWRAIPKWKSTAFTGRKKKPSRGRRTTTPRPRCWRKSPPQGA
726663..726791                     PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: plasmid maintenance system killer HigB; NDM80_03720; phage(gi971749637)     2.79e-06            NeisseriagonorrhoeaeMIVSFKHKGLERFFKTGSLSGIQAGHSVKLNLLLTALNAAQTP
726775..726942                     PHAGE_Mannhe_vB_MhS_535AP2_NC_028853: plasmid maintenance system killer HigB; NDM80_03725; phage(gi971749637)     5.11e-05            NeisseriagonorrhoeaeMPRKRLRIWLCRVGIFIPSRAVCRDIGRFKVNGNWRLTFRFNDGNVEVVDYQDYH
726950..727261                     PHAGE_Aeromo_Aes012_NC_020879: putative XRE family plasmid maintenance system antidote protein; NDM80_03730; phage(gi472438177)     2.13e-14            NeisseriagonorrhoeaeMKMHNPAHPGLVLKEYINGASITDIAKRLGVSRVALSRIVNAQSSITPEMAVRLSQLLNTSPDFWLNMQAGYDLWQIRQRKTFDIAPLFPEPPLSSMKTGART
complement(727277..727606)         hypothetical protein; NDM80_03735                                                    N/A                 NeisseriagonorrhoeaeMPRQSCHSSPFPRKRESGTQTRQESIGKNNPTAVIPAQAGIQTHNVKAVYQKKPKPNALDFRLRGNDEELGSDERREQPRKKPPTPSDGIGNKNRTAETARERIAGRAR
complement(727718..729963)         PHAGE_Haemop_HP2_NC_003315: tail fibers; NDM80_03740; phage(gi17981847)              1.18e-83            NeisseriagonorrhoeaeMANATEQNQFDQAVRLIEPGDSVVVGPGAPVNQPLQALANRTLLLKNQTEALQTASDTKAAASTAVNAGDGLTGGGSLAQSRTIALGAPGQITATSQNTVPKNGHTHAIDTARTDRAGIVRLDNAISEAEDTAATPKAVKTALDQARAAAATADLKVSLSDNQTVTGQKTFTAETQFQSGIRLSANPTHNGGYKAYIGADNENAHIVFGDDTLRLHGANNRISYNNHDIFHKANKPRFNEDIEGKPNTLSGYGIGNFKVETFRGDLNSLKTDGVYSLPTAVGSSNLPVENTACHIQVIAGTQPGWCRQLGYPAYTSDVYERYQTSSANDDWSAWKKLNSEGIPAGAIVSFPKAVRNPAGYLKADGTIFAQNTFSTFTAPWATQTNCPTPVPTSASPRGFRPTKSRRAGWRLTTSESAPNRLIPNFTACPKNTDASKTSRRRKTALSATRATAWRSERSRKTKSNGTSTKYFHTGQTTQTPPPSVTKTAMKGKEARSYRLGRTATTTTAFPRDWTAKWQRAAQKTAPKPWFNCASKPPTPWAKPCSGSPTAKPPTPAHWTRQGWRKVCRKKPTATTPPPKSKGWTKKSAPPLPRNSHAKPSAAWILSDSPTAQYRPAVTGLQEAAAPETKLSSPSPLPTATSNASYPNAIRDASTAKGNTTGCLSAQKTTPPPLLPTGTKAVATGWPSANPPRETPPAPPRSPKYLKSMKNRKERVEDHQPDSETPAATEASTSPWGRAA
complement(730003..730566)         PHAGE_Burkho_phiE255_NC_009237: gp25, tail fiber; NDM80_03745; phage(gi134288819)     9.19e-32            NeisseriagonorrhoeaeMNSTVPANNSPLQHALAKLTERETAAVSRQLDPARCDPGFLPFHAFARSIGTEEGWDFAETDEARRNLIAGFAEIHARKGTPYAIRALFPILRLGEIQIIERDGEFKWDGSVLFDGSRTFGRREGDWAEYRIVLTRPVSIRQTARIRAMLAEIAPLRCELTALDYRNHPHRWNGKIRFNGEYGFGTT
complement(730742..731212)         PHAGE_Escher_vB_EcoM_ECO1230_10_NC_027995: putative phage tail protein; NDM80_03750; phage(gi937533298)     7.58e-29            NeisseriagonorrhoeaeLAYAQGSDLDHIAAQYGLSRKTIRAADPDANPPVAAEYETDDAFRARVQAHPEKYAAGPRTAYEAHAIDAHPQITHARAVRRAVGTVEVYIKTQSGTPDETILTAAREYLPAETRRPLCDNVQVTAAQPKDAAVEYSAEYHPAANIQAERQTACEAL
complement(731473..731799)         PHAGE_Pseudo_phiCTX_NC_003278: baseplate wedge subunit; NDM80_03755; phage(gi17313236)     3.51e-21            NeisseriagonorrhoeaeMTDAENGRGQDTLAHIAQSIRNILFTRIGTRLMREEYGSFIPDLIDMPAGHAAIALIHQAAVTALARWKPRITVRRIQADTADLAAGKIKLTLDVTLADGGERTYRIK
complement(731796..731990)         PHAGE_Escher_pro483_NC_028943: baseplate assembly protein V; NDM80_03760; phage(gi971758527)     6.30e-05            NeisseriagonorrhoeaeMELKAVTSLTIDTPQTTITGHLTVNQTTTAQGLLTYQNGMNGQGGSLSEHTHPDDSGGTTEKPQ
complement(732076..732375)         PHAGE_Pseudo_PPpW_3_NC_023006: putative baseplate assembly protein V; NDM80_03765; phage(gi564292492)     1.76e-09            NeisseriagonorrhoeaeLEACRKRQKPPRSAITGRFPTSRRDRNDRPPNRQPHQTRHHRRHRPRVRAQHGGITTDWLPYIVPFAGGVSVWRIPSVGEACTILSPAGEPENGVVLCCQ
complement(732481..732720)         PHAGE_Mannhe_vB_MhM_3927AP2_NC_028766: hypothetical protein; NDM80_03770; phage(gi971741518)     1.03e-12            NeisseriagonorrhoeaeMRNKINRNDMELGYTPYNLRTLRNRCKLTQAELAQIVGVKHYIQVGRWEAEPDTETRRADMPLEKWRQFLDWIEKTNAV
complement(732748..733401)         PROPHAGE_Neisse_MC58: IS1016C2 transposase; NDM80_03775; phage(gi15677271)           4.30e-110           NeisseriagonorrhoeaeMKITHCKLKKEVQKEPLRSFVPEVTARSAADILGIHPDSAALFYRKIRTVANHRLALAADEVFEGPAGPGASCFGVRRKGRRGRGAAGKAVVFGIPKRNGRAYTVAADDAEPETLLPAVKKKIMPDGIVYADSPGSRGKSDASGFTRCRINRSKEFADRRNHINGIGNFWNQAKRALRKYNGIDRKPFPPLLRECEFRLNFGTPSRQLKILRDRCGI
complement(733423..733707)         hypothetical protein; NDM80_03780                                                    N/A                 NeisseriagonorrhoeaeMNRAALFNRYPEWIIGQDGASRFITHCRYPRLIAKIHRQTDGECPGGHYRHSENGITLYDFIFFGGKPADEARFAAVLTETCRRAVKKIGSVPD
complement(733744..734007)         hypothetical protein; NDM80_03785                                                    N/A                 NeisseriagonorrhoeaeMADILPSDKRRQPPKTKGNPINIIEQETKRTELRKIDAEIAKIIADAHKINAESVKIAQESRWYPMMAATGLVTAIAAVLALIFKFA
complement(734027..734275)         hypothetical protein; NDM80_03790                                                    N/A                 NeisseriagonorrhoeaeMHGFRDLFTNISLTAGKDTLTTDLALGHISRAALQRAGFSSLHHYLTADSYRLQERRELAEWYGRRHRQAYEAAAQNTCNKT
complement(734236..734562)         PROPHAGE_Escher_CFT073: putative prophage integrase; NDM80_03795; phage(gi26250313)     2.73e-09            NeisseriagonorrhoeaeMLSARWQDIDLTARLWHIPAADMKTKHPFTVPLSDWAVEILRELHTQTGDNIHLFPGIRPRRKPAPHPDHISIKFAHNAIRRLGYDGSTPANPNTPCTDSATSSPTSA
complement(734792..735292)         PROPHAGE_Escher_CFT073: prophage P4 integrase; NDM80_03800; phage(gi26249391)        6.22e-26            NeisseriagonorrhoeaeMAAHNKLTQKQIEAAKADGKQSKLADGGGLYLLLHPNGSKYWRMRYRHGGCEKTLALGVYPAVSLKQARELARAARAQTAAGIDPVAEHHRTRPGSGRSLPEIARAWYGSRQGQRADNTLEGDRRSLAYLTDYYKDNTDINDITTAGVSKFIEHLNRINIPACARRT
complement(735501..736280)         ferredoxin--NADP reductase; NDM80_03805                                              N/A                 NeisseriagonorrhoeaeMAASPEAKFTEEKILWVKHHTPKLITFAISRPESYRFKAGQFSRLGFYEGKGFIWRAYSVVSAEYADTLEYFAVLIQDGPMSALFAKMQQGDTILLDKNATGFLLPERFPDGKDLVMLCTGSGIAPFLSILEQPEIRQRFDTVNLIHSVSFPEELIFNDRLAALSEHPLVGEYGHSFRFVPVTTRAANPSGLSGKRIPELLKNNSIEQALHTKLTPESTRFMICGNPEMVKDTFQTLLDMGYAMHRNRIPGQIMMENGF
737180..738238                     PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; NDM80_03810; phage(gi399528790)     8.04e-19            NeisseriagonorrhoeaeMSLRKIIHIDMDAFYASVELREQPHLKGRPVVVAWEGARSVICAASYDARQFGLHSAMSVATAKRLCPQAVYVPPHFDLYRQVSAQIHAVFRRYTDLIEPLSPDEAYLDVTRNFKNIPYAGEVAKEIRAAIFAETGLTASAGIAPNKFLAKIASDWRKPNGQFVLPPHKVMAFLETLPLGKIPGAGKVTLKKMQSLGMRTAGDLRRFERGELLNHFGRYGYRLYDLARGTDEHPVKAERERLQISTEITLPEDLPLGQAAGHLPHLAEDLWRQITRKNVEAQSVTLKLKTYDFRIITRTLTYSSVLPDCAALLQAAQMLMARVPPQTEDAFRLIGIGVGRLVPKNQQQDLWA
741170..741181                     attR                                                                                 N/A                 TCAGACGGCATT

#### region 4 ####
1087299..1088150                   PHAGE_Aggreg_S1249_NC_013597: putative phosphoesterase; NDM80_05650; phage(gi100037)     1.53e-44            NeisseriagonorrhoeaeMNAVQVLNFQQNSVRTVADNKGELWFLANDVCEILGYTNPRRTVDLHCKSRGVTKRYTPTTSGEQEMTYINEPNLYRLIIKSRKPAAEAFEEWVMETVLPAIRKTGGCQVGPKTTADDRTGLRRAVAALVGRKGIDYSSAYSMVHQRFNVESVEGIPAGKLPEAVAYVHALTLHTGLTGEVLDREPLPAPQPALPISGNALADIAAMVYYGTRMIESGKDVSAPLKQLGCRQAVTMWTVWHETRPILKRSAAALEVLRGYADKDASGRIAACLEGIYGKAAVR
complement(1088187..1088336)       hypothetical protein; NDM80_05655                                                    N/A                 NeisseriagonorrhoeaeMSAEEFCRKQIAYWLNESRKASDNADLKAFEFAGRELADYREMSERYAA
complement(1088339..1089013)       PHAGE_Pseudo_H66_NC_042342: exonuclease; NDM80_05660; phage(gi100048)                1.46e-54            NeisseriagonorrhoeaeMNLKALIARFRVLANDKAEPYFWSDEEVSGWLNDAVHEACLRGRLLHSDDAFVTDVEKGRPLYAYAAWGFAAGYAYEIDSIRFVSDGKPVCLKLVSPEAADVCAPGWRDGAQTGLPVYAVQGDGKLTLAPAPDRDGRLFAGGYCLPRDMAGDGDEPEINSIHHRNLVYWALAEAFSIPDAETFDPQRSESARRRFELYFGLPADSDLRRITREDAPHLNRHFWI
complement(1089010..1089417)       PHAGE_Pseudo_H66_NC_042342: primase; NDM80_05665; phage(gi100047)                    9.14e-10            NeisseriagonorrhoeaeMDKVFIKYIGGRAVWRDRIYHTGLVFEDGQVREVSAGAAAKLLRHGDVFAAVPGKRVEKADDTEALEKAGASELEREAAAFDAVQDVILQINRMGKDELELYAKANYGQGLDKRKSAENLREAVVRMVRQFGIAQ
complement(1089501..1089959)       PHAGE_Pseudo_H66_NC_042342: HNH endonuclease; NDM80_05670; phage(gi100046)           1.62e-29            NeisseriagonorrhoeaeMRNNGGNRFGGVPYGNLAAEHYRIVAKQDGAILGADAYGPPKAGDVLALGVLEQGFRLDDAQIIVKTAMSSGITADVGFAYADGADDAHVPQDAAYFASGADFASAGRIRCGSAKLVTLPKQALLTVTLKGAGNKKAADIDILIYGEKFGQL
complement(1090032..1091327)       PHAGE_Pseudo_H66_NC_042342: putative transcriptional regulator; NDM80_05675; phage(gi100045)     6.48e-164           NeisseriagonorrhoeaeMAQKTNTAYGDPQAMMKQAAGLFAMHMQRNSTLNRLAGKMPAGTAGAEATLRKQTTQHMPVVRCQDLTRGMGDEIRFNLVNPVSALPIMGDNTAEGRGVGMSLSEAGLRVNQARFPVDGGGTMTNQRSPADYRALIRPAAQSLMDRYADQTLLVHMAGARGFHDNIEWGVPLAGDPKFNDYAVNPVKAPSKNRHFTASGDAVTGVGGNGGELKIASTDLFTMDTVDSMRTVLDQIPLPPPIVKFEGDKAAGDSPLRVWLLSPAQYNRFAADPKFRQLQASAIARASQANQNPLFLGDAGLWNGFILVKMPRPIRFYAGDEMKYCADKFSEAESGLKIPASFADKFAVDRSVILGGQAVLEAFANTGKHGGMPFFWSEKELDHGNRVETLVGTIRGVAKTRFAVDVGGGAKEITDYGVTVVDTVVPLHGGIR
complement(1091953..1099260)       PHAGE_Pseudo_H66_NC_042342: hypothetical protein; NDM80_05680; phage(gi100060)       1.14e-38            NeisseriagonorrhoeaeMSDLVRYDPLEHGRLAGGLKEYRGFTQKDARAAADDTALTRGFKNSMRSARMGWNALTGDKEELGRLKAEDMDYRKIQEGRKSQARRELGEAWEKGGGVGGGLSNVWGELKKDWREKGLDGALEDVGEMAGAVLEQAPNALVPLATTTAGGILGALAGGNAAVGAYAGATLGNTLMEYGGQLDRAAEAAGVDPADKDAVMAFIARGAPGALKNAAVKGAVVGAADMAAMKLGGSILNMGKKAAGKAALEKMGVAAADKAAVAAAKGTPEFAALAKESAKGGLGGAARHAAAYATEAAGEFAGEYLGTGLANGEWDEKGAALEAFSSLGHSAVGFAGTKAYAAVTDPLRPPAGRKAGAQGGIGGNRKAGRPAPEGAQALRAAAQAAADGGAEQGGAGFDTAHHDQPHPALRQFADRTKQEGAGRFFSGPADGNTPHAEELARGTEKQPDVSGIPSEDGAEFLDTGVMPDGLARQYADMAAEYRAKPSEVIGINPDDGAVSAAAALAADSGAAVPPAVSDDVETPPVADDVPSGRSAGADRGGVPSAYGNVRPGGAPRGAASVAPGGSAAAASGGIARVSPLPAGQYFDGLDTRGRKALAKEAGLDIKGVADFGQIAAPVRRKIEQAYHARIEADYQAASEAKQGYLPPPVRMADAVPVPKKGFSVPADALDKESRRRFDALPEWVRRHAQTVADYTADGIMRREAGMADMRGHYPEGLAESAGAVRAYRAEHPESADVLDRLNRAVYGYRRNNGWSVPLLSREGERLQGVRTALPDDGASEAVVGGGRGLTRALPTEDKGLAQDVRQDVRQGLTQGGRGLTPDAGADANAAALQGLPGSAAVASGNAPARRQNLQVRARAEGAAPGLSASENLAGTDGGKRAPVAGKRPDTVLPVLNPQVAASAGRVSPKKRMADAAADRRRPEKAGVPLGGGEYRFEHTDRRHIDALAGVPGRSGKGGMPEEFADMAGPSNSDDLVSDGRRYLKGREAETLRAGGLSEAVPSEPGRDYRPTQEARAPAKVMARPRDAAADGKPAGRAQPARAKDTPVAGKAAAAKNAATEKPSSDKVRNIEAGKSRFDGGKGKSAAAQGAATEKPSEKTGKAKPETFAKTASDNPEEARRKARVLQGGPVYTVKERQAPQGFKALREHAESIKKRLAESIGGLAERVDVAAVSETAPDKAQMLLSQRVEGWFDGRTGKITLVAENLTPERAVWAAWHELGHRGFAADGFAKYREELERADGNGLIRRIADAVQEGREGTGDAAASVRPAAVEEAVAELYAAQRTGGWAGIENRYGVKVGNGLKRGIAGVLARIGALLRRVLQRLAGKAGGAMSDADVFAMLADLHGNVEGARDAPWGGNHRAVMFARAEDGAAERSKSESLEKLRRAETIRISGREVPEGGNLREYKRNALEYGKSLRGPYVNKDTGREISLGRSGITEILRHDYKDAEHLQSIAAIPQIIENAVYIDTLPNEDLAKNGDIQGYEYYVSGLNVGGADYTVRAAVAVSRNGNRYYDHKLTKIEKGNLLSLLDRVSTTGASESKSPLSGIDDKRLLQILQDKDAGKGGIADFDTEAVRFSRAANIGAAISRITGKKSDLRNALKDRWDASKGIQLQFLGRRQIEDIYGGVLDGLKEYGRLSELFGADANKAVTEADKVVREWGRLKEEDAKALADLMHDATLAKVDADPLMRKDARGRLDGIRTALDIADGKIAKAEAAVASAGARTARADAAVRKAQRAADKAAYALEKAQEKHGREILADEADIRLRRLFYADSEAKRALRRAEADAAAENQAGADAVRMLEQARADVKRLEKDEVGAQKALEGLALLNRRFAGLPDAAQRVYRKARDDYRAHFGQVRDALAERLARAGQDAETVRRLKERFDNELGGVYFPLARFGDYLVVVKDADGNSANVSRAETLSEAEKLRDALKADFGPGFKVSPVMKSRDYIRSRDAVSGGFMRELGEAVGRMDLDPAQRARLNDTLTQLYLNSLPDTSWAKHGIHRKGVPGFSDDARRAYAQNMGSGANYLAKLRYADRMAEQLDVMQDFVDGRKYEEGFDQRQLQRVADEMRKRHEAVMNPNPSKLAQALTGFGFLWMMGMSPASAVVNLSQTAMVAYPVMAAKWGYAGAARELLRASKQIGLRFGEKFNTIEDSLNGDEKAAFRKAADYGVIDLSQAHDLAGVANGDPGLAGSAWQKVMDKAAWLFHHAEKFNRQVTFVAAYRLAKRAGADSDAAFEQAKKATYDGHFDYAAQNRPRFMMGNAAKVVFLFKQYSQNILYALGRNAYLAFKGDKQARKTLAGLLVSHAMASGILGLPFVSTLLAVASMLGSDDDDPWDAEAALRNMLADTFGDKAGEVLAKGFSRLTPLDVSGRLGLDQLVFPDIQDGLEGKKWAESLVVGSTGAVVGAGIGAADGVRTRSSVPRTANTLSLMKSW
complement(1099257..1100453)       hypothetical protein; NDM80_05685                                                    N/A                 NeisseriagonorrhoeaeMGLFEPSAGDFWEMKEKEEKEKARKGAEERERAAAQAHRADAVRRTVANYEAGPARYRNVMDLSRNNIEDGARRLRRAGAFERGADAGLGFSGGDKALSPDARAGADFARRDTRPTDAGGRTPPPLGFDGNVYRGGKPVRDFDAQRPLVSSKPDALSPEERELYKRATTPHAGALNGQLTAAQLNAARGIVAEHNKNAAVRELGRERLAAAAAENAANREAVLQKGRFDAAVKANEGALNREMAQRNADRAFDVQQAELGMKRQGFEMKREADALELEDRKRIADLTRAYGFAKSDGQRGEIARQIDALNGKFERQGEKGFDPNVFKTISYEVADPDTGLTAKREGIVDLRTGKPLDVEFAGEREKRYAQLGFKPNGQKTAGGKIIYENEKGEKRVEQ
complement(1100691..1102958)       PHAGE_Pseudo_H66_NC_042342: hypothetical protein; NDM80_05690; phage(gi100042)       0.0                 NeisseriagonorrhoeaeMEALLMGTDVPETGVLPDKNGEPLTIGEYRLFVGEMMNQPAWRAVADKEMDYADGRQLDNELLQKQRELGLPPAVENLITPTLLSVQGYEATIRTDWRVTADGETGGRDVADALNFKLNRAERQSRADKACSDAFRGQIACGIGWVEVTRNPNPFEFPYECGVIHRNAIHWDMKSYKYDLSDARWLIRRRWLLPERLAQFFPEYAGHFKAMGRGGSDWRISGEMLDGGGNTGLADAWGISGRNTVSEEFWFNETTRELAVAEVWYRRWVTADCLRDKKTGRTVEFDGANPNHREMAANGAVLFAASVPRMRRAFVVGDLVVRDEPTPYPHQKFPYVPFFGFREDNTGIPYGYVRNMKYAQDNLNSTNSKLRWGLSAIRTVRTKGIVDMSDEQFRRNIARVDADIVLNKIEAAQPGARFDVSRDFELSAQHWQMLQDSRATIRQISGITPSFMGNRGNATSGRQESIQVEQSNQSLGLVMDNFRQSRSLVGELLLAMIIEDLGSDEQTVVIEGDAITQGRTVVINRPETDPVTGKAYLSNDLQNIRLKVALEDVPSTNSYRSQQLGAMSEAVKSLPPEYQAAVLPFMVSLMDIPFKDKVIEKIKEVRVQETPEQIEARIAQAVQDALAKSGNDIKRRELALKEQRTASEIKEIEARAVQIGVQAAYAAMQAGGQIAAMPQIAPVADAVMQGSGYVRPARGDDPGFPVPAMPPETQIPPEGIPEAYGADTGPMTAVPPKSANHAQTGMETPTVSDNL
complement(1102943..1104196)       PHAGE_Pseudo_H66_NC_042342: DNA adenine methyltransferase; NDM80_05695; phage(gi100041)     0.0                 NeisseriagonorrhoeaeMKLPAKLDGLFKPCRYKVMYGGRGGGKSHGAASALLALGAQRPLRILCAREIQKSMRDSVHRLLKDKVAQLGLGHFYEITDFEIRGANGTLFVFSGLQSHTVDSIKSFEGIDIVWVEEGHGVSKKSWDVLTPTIRKEGSEIWITLNPDMETDETYRRFIAMPSEDTWLCEINWRDNPWFPEALNRERLKAQRSMSKEDYGHIWEGRPRMVSEGAVYRHEIQDAFHSGRVTLVPYDSSLPVHTVWDLGWNDAMTIGLVQRDLTSVRIIGYIEDTHRTLDWYVAELEKLPYRWGTDFLPHDGRTRNFQTGKSTMEILTGLGRKSVFVQNAAGIEEGIRAARMLFPKVYFDKDKTARLLECLKRYGRQIHAKTGVAMGPLHDEYSHGADMFRYLAQAVDLMDTGSNTGYTETPVSDWRLY
complement(1104198..1104737)       PHAGE_Salmon_SEN34_NC_028699: terminase small subunit; NDM80_05700; phage(gi966201418)     3.17e-08            NeisseriagonorrhoeaeMPRLSDEDWRKLELDYRRGVLSIAEIGRKYNVSAQHVGRVAKERVWTRDLNDEVQAKARAMVLSADANGDAPDYTDFNLKQVTDAEAKRVAAVQRRHRNLAENLSKSAEQIVAELYGSPEDTFTKARMFQTVAAGFKVLVEIERKSYGMDTAESKISESAKTAGIRIEFVGPEDDGKDG
complement(1104737..1105159)       PHAGE_Pseudo_H66_NC_042342: hypothetical protein; NDM80_05705; phage(gi100039)       2.00e-20            NeisseriagonorrhoeaeMSGLSDIDKVYQGVVDLHNAEQVVSREALAETTGLKMSEITKFTKLLVEHGKIYRVTRGIFKPAIGFGETRPVSVSVLDSGMGVLEIGDTVLHLNPQEMRSLGALMSGFGQQFSSIQMGREFSVLRNYLECSAKNGRLDL
complement(1105224..1105742)       PHAGE_Salmon_UPF_BP1_NC_047875: hypothetical protein; NDM80_05710; phage(gi100004)     1.44e-30            NeisseriagonorrhoeaeMGLTQEVLKELLRYDDNTGKLYWAERPRKYFNSGLHYKSWNTRFSGKEVFLYKGRLGYLKLKIFKKQYNAHRLIWLFVYGKHASSIGHINRDKTDNRISNLRDVTHAENMKNRGKFKNNTSGHTGVYFHKPSKKWQARIMVNRKNKILGLFEHIEDAVKAREAASKDFGFVV
complement(1105733..1106116)       PHAGE_Pseudo_JBD44_NC_030929: hypothetical protein; NDM80_05715; phage(gi100006)     1.98e-24            NeisseriagonorrhoeaeMNGAEFTLTPQNKKQVMRSIWDSLDGWFENGNLEITIRPRKSKRSVEQNRRLWFLYREISEKVFIDGRRFSQDVWHEFLKRKFIGCIEMPNGQLMGISTTKLSVREMSEYQEKIISWASMEHGVLWD
complement(1106113..1106418)       PHAGE_Escher_ECP1_NC_049926: hypothetical protein; NDM80_05720; phage(gi100011)      1.84e-10            NeisseriagonorrhoeaeMSSAIRKAAKGGQCTPNIAGVCNDNPETTVLCRFPGETRGAGLKSGGLGAGFGCSCRRGAIDGRSGHLSREDKEFYMRRSQLRTIRRLEALGVVGVKGRLK
complement(1106411..1106848)       PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; NDM80_05725; phage(gi148609431)     3.89e-10            NeisseriagonorrhoeaeMRVIRLILPYPVSANRYWRIWGNRAVRSAEAAAYRETVRRIAQGAGAMPSEGAVAVYVRLIPKANKDGGANKTVIDLDNALKVTLDALQGVAYHNDRQVRRIAAEYGGEPVAGGGLAVEVGELEMEQTDAADEGWDFIGQEGWDV
complement(1106839..1107120)       hypothetical protein; NDM80_05730                                                    N/A                 NeisseriagonorrhoeaeMAEEMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
complement(1107149..1107298)       hypothetical protein; NDM80_05735                                                    N/A                 NeisseriagonorrhoeaeMDTLLSIIATLSFAGAATLAVWLLVEAADAVLRRKREGKGEDDFDGFGY
complement(1107479..1108030)       PHAGE_Mycoba_Gengar_NC_031035: putative transcriptional regulator; NDM80_05740; phage(gi100045)     4.67e-08            NeisseriagonorrhoeaeMTVQNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRAGAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEAGRAPHPESPMPPETAVGLAEIGGNDGSSVSRNSNMTET
complement(1108044..1108295)       hypothetical protein; NDM80_05745                                                    N/A                 NeisseriagonorrhoeaeMRETCFYCNHADFKTNTGTPVRGFAKCAKARNAEERAKHYPRTNPCAAGAFQTASGAAVAKRTAALGEYPGIPEIENRVKTQI
complement(1108312..1109673)       PHAGE_Marino_P12026_NC_018269: replicative DNA helicase; NDM80_05750; phage(gi399528354)     6.86e-71            NeisseriagonorrhoeaeMNRIEETEAVQSLASVGAEQNILGGILIEPTAIARCAILTPEKFYQAQHRIIFRALLDMAAANEPIDIITLNDKLEARGEAENAGGLAYLIDLNQNTPSAKNISRYVGIVNDRFVERGLLKASAAIEKIAVSKDGGTVAEKLSKAADELAAVGKDAVKRETKTFGQTVEDLIGGLDKRLDGVRFGLPTGLMKLDGMTGGLPDGNLIVIAARPSMGKTVLAENIARFALKQGKAVHFQSYEMSAVELARRGMAAECNIPMQNLKTGNLTQSDYANMPIYVSQAKEWKFDVNCDLLNVDELCFLAKEKKLTTGLDLLVVDHLHIMPRAGRDEVAELGNISRRLKNLAAELNIPVVLVAQLNRGNTKQADKRPNMADIRGSGAIEQDANIIIMPHRESYYDGNENPSIAELIIAKNRDGETGTVVCGWKGQFMKFEEEPDLAWQAPKHDEYDPYSV
complement(1109670..1110734)       PHAGE_Acinet_WCHABP1_NC_041966: terminase large subunit; NDM80_05755; phage(gi100070)     1.09e-25            NeisseriagonorrhoeaeMMKPSESLRAAGRPIAYYPKLAKPLGGVNAAILFGHFFYWNDKTQYESGIYRTAEEIEIETGLSVQEQRTARAKLRERGVLIETEKRIEHRIYYKLNLDAFDDLMLQHSGGGESTAPKCNINSPELQNQHSGGGESTAPKCNINSPELQNQHSGSEESTAVIRTEDLTEDLAVYTPLPPNAGNGKGGLNADAFVSADAETCGRETGEPTSPKAESDSNGNGGLSGKPKNANVPRRRKTHGVPLQEIADLYNEVLGGRLPSVQVLNDTRKRAIANRWCEMLGTAAPNGKVRFGDKETGLAWFAGFFRKVAMNPFWMGENQTGFAVGFDWIFKAGNFVKILEWHPPKTNQAARGRA
complement(1110852..1111079)       helix-turn-helix domain-containing protein; NDM80_05760                              N/A                 NeisseriagonorrhoeaeMNQKQTQCKQIVDYIRNKGCITSLEAYQNLKVTQLAARITDLEGRGFVFAKPKYKVGNCKNPVAHYSIAKSGIEP
1111252..1111440                   hypothetical protein; NDM80_05765                                                    N/A                 NeisseriagonorrhoeaeMPSDLSFILAKELIRSGSIRLSGSTAKGQAGELAVFIRTLHQKPEESEPNTDDEYLIGLLSK
complement(1111417..1111572)       hypothetical protein; NDM80_05770                                                    N/A                 NeisseriagonorrhoeaeMKKQDRNRLSKKDRRLIKKAMLKAAAKGSDEVYRIAPGLKDGFELLGKQPD
complement(1111652..1111888)       PHAGE_Aggreg_S1249_NC_013597: recombination protein; NDM80_05775; phage(gi100049)     6.98e-10            NeisseriagonorrhoeaeMAMSIQKAVDYFGNESRLARAIGVKQPTVWAWNKKGTPPPIIRCVQIEKLTGGAVNRKDLRPDDWHLIWPELAGDQPK
1112011..1112673                   PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; NDM80_05780; phage(gi100039)      2.77e-21            NeisseriagonorrhoeaeMFSGEQLGQAISEAIKRKNVSQKEVADHFGVKQPSVSGWIKNGRIDKKHLDKLIDYFSDVVTPSHFGIETFRVLKSNEQSSIRFPRLNAEATCGAGTINDHYIEVVDYVTVAAAWAREKLGGNLNKIQVITARGDSMEPTIENGDVMFVDTAVEAFDGDGLYLLWYIDGLKAKRLQSTVGGGLMIISDNSSYRTETVRGEDLNAVRIIGRIRGAWRLSQF
1112786..1113223                   hypothetical protein; NDM80_05785                                                    N/A                 NeisseriagonorrhoeaeMELTVHFNAEQDLDRLFEKDEEAVGYLENVIAMIQADSAIFDGLYKNRYFREYGEPIGPIDLEVKPILSLWGKDIKVLRVRFDSEEAAGYRIIYAPCHEKQPNGTYIRRIDILAVVNKKTDEFDYQAEHPITKRIIKDYEELYSN
1113201..1113701                   PHAGE_Brevib_Jimmer2_NC_041976: hypothetical protein; NDM80_05790; phage(gi100059)     3.03e-05            NeisseriagonorrhoeaeMKNCTPTNGTWFKMGATLTVAVAACTVSTPTSAIPVTHIKCLRINGQIKCVKPISPNTTPAAEHIEHVRKNPRRKAAMDRAAARIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYEYMEQA
1113698..1114111                   hypothetical protein; NDM80_05795                                                    N/A                 NeisseriagonorrhoeaeMIHLNVHYCDEIIRHAENDKYSLIGIFPDICHIPTPQAILGRLCLSVSFSAEGMDIQTMKTGQIFLEIVRNDDVISALEIPSYDGSDTEENVSFMLHQTISGLPVSDNDRIYVRMTTHNHILSESRPLSFSWLPYHS
1114309..1114509                   hypothetical protein; NDM80_05800                                                    N/A                 NeisseriagonorrhoeaeMNELISRINRFGARAKDEQSLLLKVGEICRDAAATWTTRKSESINHTAFTFTVKKDGLKEKVMIVL
1114542..1115018                   PHAGE_Iodoba_phiPLPE_NC_011142: hypothetical protein; NDM80_05805; phage(gi197085698)     1.68e-32            NeisseriagonorrhoeaeMEANKFEVKSLSDLIKVFAGIAADFEAAMGVKRADISTEFDEPQHEPQPPVTVAEQKGINDFAIGKEVIIRTYSAGVWFGVLKQKAGNEVILTKARRMYSWWAKESISLSGVARHGIRQDGSQICGELDSVWLEAIEIIPVTGGAAESIRTALEVAQS
1115015..1115290                   hypothetical protein; NDM80_05810                                                    N/A                 NeisseriagonorrhoeaeMSYLDQPLKHGYGNGNGSGNGSGYGNGYGGVGGGGSGYGYGNGNGYSNGSGNGDGDGNGNGSGNGSGYGNGYGNGYSNGSGNGYSNGSGNG
1115432..1115764                   hypothetical protein; NDM80_05815                                                    N/A                 NeisseriagonorrhoeaeMKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESGLIEIAKKSAREFVRDADGEPYSQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
1115917..1116192                   hypothetical protein; NDM80_05820                                                    N/A                 NeisseriagonorrhoeaeMKTRNIAFKLAVLAAVLAAGYAFGFAKGGGSRTAKGKPADIAAMRMALAQKQAEVDELSAQVWLEERHLNAEEEAGCRRVHGDAEVPEGKE
1116189..1116350                   hypothetical protein; NDM80_05825                                                    N/A                 NeisseriagonorrhoeaeMSFHPETAYTGGGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
1116419..1117105                   PHAGE_Pseudo_HP1_NC_048630: hypothetical protein; NDM80_05830; phage(gi100002)       2.82e-10            NeisseriagonorrhoeaeMSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKQPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGRPEHPQGNAAPAEDIEDDIPFN
1117245..1117427                   hypothetical protein; NDM80_05835                                                    N/A                 NeisseriagonorrhoeaeMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
1117424..1117915                   PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NDM80_05840; phage(gi374531698)     2.47e-19            NeisseriagonorrhoeaeMTALALYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEGHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGREVAGAKIEERKNLQIR

#### region 5 ####
1620172..1620188                   attL                                                                                 N/A                 CCGTTTCAGACGGCATC
1626561..1627715                   PHAGE_Burkho_AH2_NC_018283: integrase; NDM80_08415; phage(gi399529076)               4.75e-57            NeisseriagonorrhoeaeMATITKRRNPSGETVYRVQVRVGKKGYPAFNESRTFSKKALAVEWGKKREAEIEAGPELLFKRGKVKMMTLSEAMRKYLNETLGAGRSKKMGLRFLMEFPIGGIGIDKLKRSDFAEHVMQRRRGIPELDIAPIAASTALQELQYIRSVLKHAFYVWGLEIGWQELDFAANGLKRSNMVAKSAIRDRLPTTEELQTLTTYFLRQWQSRKSSIPMHLIMWLAIYTSRRQDEICRLLFDDWHKNDCTRPVRDLKNPNGSTGNNKEFDILPMALPVIDELPEESVRKRMLANKGIADSLVPCNGKSVSAAWTRACKVLGIKDLRFHDLRHEAATRMAEDGFTIPQMQRVTLHDGWNSLQRYVSVRKRSTRLDFKEAMMQAQSDIKSGK
complement(1627765..1628031)       PHAGE_Pseudo_H66_NC_042342: methyltransferase type 11; NDM80_08420; phage(gi100001)     1.34e-06            NeisseriagonorrhoeaeMNISKEQGLLIAYGGRPYIPPREVHKDFFAHIGFNAFKASGVRCELPFPIFRLSDSRKSEYFVSVRELAKAIADKEEKAKSEYRKFRS
complement(1628139..1629287)       PHAGE_Mannhe_vB_MhS_587AP2_NC_028743: hypothetical protein; NDM80_08425; phage(gi970580043)     8.37e-115           NeisseriagonorrhoeaeMRTHIRTCVYHDSGTKGSNTASGISGTAAGAAEQAFFSAAKTANRSASAASANAPPHPDKPKNGRKPMTFQGHNNRKKAGGYAEYITGGSLRRLVAAKVRRYCGEHPGVFDGAAGSGQLEQYIEPSDFRAVEIQAEACKALLQNYPAAKVYNTSLFLYTDGEPQDCTVMNPPFSIKLKDLSEDEKSRIAREYPWKKSGVADEIFVLKGLENARRFGFFILFPGIAYRKSEQRFREIIGNRPAELNRIQNAFEDTPIEVLLLVIDKDKTDGGCIRELYDCKTDTLLAADTWQIEPDLWQTVQEPAPPKEKEDPVLLEHECRDAAAKRIARELRFSKMVNEIEGWPHAEFDGFCDRLCNLIQAEKYGKKHYFPCSLPLFGGAAG
complement(1629284..1630267)       hypothetical protein; NDM80_08430                                                    N/A                 NeisseriagonorrhoeaeMQTVATRPTAKQMLAAKRAAKESTRQERAVKRAGTVKNVDRNRLSARSKAQKENIARMLSGAKVSEDEALTCGIMMRLSLQDMRYACNQELINFAEHIVKQVQRLGLYCNTDDPENEESVLFACREASQAVAKWTKDFDNLSPNQRQLVLRPLSNLFAAYEEFLKDAPARLIAEVSAYSLAVRVAKKAMAFLELDGGLISAVGKVVNGADSRAEARRLKMPYAEFTGRILHAANLLYDVGIQADKELSAMYGKPLNPVRPRRISDVRRPMMKMLVADKGGALVRAVKDSEDVIRHCDNGAGFSCFNWTEHFKRTANLISLMHREAAA
complement(1630378..1630593)       hypothetical protein; NDM80_08435                                                    N/A                 NeisseriagonorrhoeaeMSYLEDVKNALRVIDNLCKEALKEPESLEGYIDEIRDKADEADTSLEFLKDVINYGISDLKNVIEVFEDCV
complement(1630645..1631136)       PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; NDM80_08440; phage(gi374531698)     2.47e-19            NeisseriagonorrhoeaeMTALALYRCAADVQAALDYYFDSETEREDTLEAVIGQFEVKAQSVIAYIKNQEITEKMLEGHIGRMTGKLKAAKARNQSLKDYLARNMQAAGITEIKADDGTFKASFRKSEAVVILDEAQIPAEFMREAVKTEPDKTAIRKAIESGREVAGAKIEERKNLQIR
complement(1631133..1631315)       hypothetical protein; NDM80_08445                                                    N/A                 NeisseriagonorrhoeaeMANIDLTQWDGKTIGAAANPEQGYINITIGSDDLFINIEQAYAIHAALGEAVAEYEGGAQ
complement(1631455..1632141)       PHAGE_Pseudo_HP1_NC_048630: hypothetical protein; NDM80_08450; phage(gi100002)       2.82e-10            NeisseriagonorrhoeaeMSLILSVKDESNFKPCPAGSHHATCIRIIDLGTQLVEYQNEQKRQHKILVQWEIDPEGDPEMLMPDGRPYLISRRYTASLHSKSQLATDLKSWRGRDFTPEERDNFDLRNILGKPCLLSIAHQESSDGKTTYANISAISNKMKSYTPKQPDNAVFAFDLSDPDWANYGLLNEKLREQIAKSPEYAEAVNGRQPPAPPQKQAQAAEGRPEHPQGNAAPAEDIEDDIPFN
complement(1632210..1632371)       hypothetical protein; NDM80_08455                                                    N/A                 NeisseriagonorrhoeaeMSFHPETAYTGGGETEPYGPSPEEIKYRQSPETAETRRMTEKQAEGHIKSIIR
complement(1632368..1632643)       hypothetical protein; NDM80_08460                                                    N/A                 NeisseriagonorrhoeaeMKTRNIAFKLAVLAAVLAAGYAFGFAKGGGSRTAKGKPADIAAMRMALAQKQAEVDELSAQVWLEERHLNAEEEAGCRRVHGDAEVPEGKE
complement(1632796..1633128)       hypothetical protein; NDM80_08465                                                    N/A                 NeisseriagonorrhoeaeMKYYGTAAYGSPDWGMERYYAREDMRQALDGWEAENRILHESGLIEIAKKSAREFVRDADGEPYSQEDWETYLTEDASRIGKDTEAAMNYAIDEREWFALAENIGRLANS
1633674..1634435                   hypothetical protein; NDM80_08470                                                    N/A                 NeisseriagonorrhoeaeMEMQLDKQTLTVVVRNSEPVELSVFAQSMMSLADDYESMCGSAGSHARLYIKEIRQGSIIAELAPLLPLAGTLFEGAGQILAYAKNFIEITDWLMGKGKEPAGVTDSQIRNIANIMQPAASDKNGSIEINVNDNNGSVVNNITYNYFAANTVQNQARRILGERAEASESGDYGQMVMYFVQAAPTKETNQAVIEGIYSRPVKILIPEHIKREMFAEPYPFEKYYIVDVSVQTARGKPRLYKVTGYHGVVDGDD
complement(1634524..1634940)       hypothetical protein; NDM80_08475                                                    N/A                 NeisseriagonorrhoeaeMPQSWQCRQGACLLIPSGPNSCQHLFTILVNPCILPNRGNKPQVLSVGISSVRANIPYDNACIIRQGEHPFVRHDSYVRYRDARIDAVEHIENRVHEGIFSVKPPCSEQLLKRIIAGASTSRYAGREVKLLIEKFAIA
complement(1634949..1635533)       PHAGE_Lister_B025_NC_009812: gp27; NDM80_08480; phage(gi157325244)                   1.42e-07            NeisseriagonorrhoeaeMKPHNDTIFQEPKAAQAAAFLLYKANGRLEVLKLMKLMYLAERESFLCFGEGLTGDALVSMPHGPVLSMTLDFINGGHESVPNGWATWVSDRENRMLALRDPSMIRTPGQDLSALSEADLEVLESVWENYGHYSAWDLRNMTHNGLCPEWEDPHGSSRPIPIKKLLSVLGYDDEQAVAIVERLEEQAYINRAFG
complement(1635715..1636116)       PHAGE_Pseudo_phi3_NC_030940: hypothetical protein; NDM80_08485; phage(gi100035)      1.03e-30            NeisseriagonorrhoeaeMFIPAALHKDEHSAYGVTIPDLPGCFSCGDTVEEAVANARSAAYMHIDGMIEDGGFKNLAVSSIADLSQEPDYHGATWVMIEIDPAKISRQQIRFNVSWPQYLLDRVDEYTSANHETRSGFLAKAALLTMNQA
complement(1636218..1636400)       PHAGE_Acinet_YMC11/11/R3177_NC_041866: hypothetical protein; NDM80_08490; phage(gi100075)     1.65e-24            NeisseriagonorrhoeaeMNSLDVIALLKQDGWYKVAQSGSHSQYKHPTKKGRVTVPHPKKDLPTGTVKNIYKQAGLK
complement(1636570..1637388)       DUF3037 domain-containing protein; NDM80_08495                                       N/A                 NeisseriagonorrhoeaeMNRYAMRFAVIRFMPYVQTREFANIGIIITHPQSGCFDFKIEHRYSRLSRFFRRFDPPAYKAATRAFEKELQRIRNLAAHSAPDQIRAMPDHLTRPREALIMAARPGVTLAPGRGQELNRLFDYFVARSFAKNQPEAELTRQIQAMSKPLQTAYPFKESTIGDPSGFHASIPLVQKAENGEIRKIIKPIYFGRKDPADIYYKSDKRIAGIKRLRRGGYIDRSEILFAYEPPERPDKAQEKALLDVSGDLEEQGIQLADNRSEGKIIRNFACG
complement(1637663..1638418)       PHAGE_Escher_ArgO145_NC_049918: holin; NDM80_08500; phage(gi100034)                  2.58e-19            NeisseriagonorrhoeaeMKKRELNEIETAECAELKRIFNSKKEELKLTQYKLAEAVGVTQSAVNHYLNGTNALNASIASQFAKILQIPVSDFSLRLAEEISSMSIGIDGDKLLALQADNLDTNTITLNLYDVSASCGHGVVNPDYPQLLRSIEIPNDALFELLGTNNLTNVQLMPPDGDSMEPTIPQKSITLIKTDVSKFQTGGIYLFTFDGYTYIKRLSRGKGGAIHATSDNRHYAKSDFLINPEEADKFHIHGKFWKVLPLDFLDL
1638555..1638740                   PHAGE_Pseudo_H66_NC_042342: holin; NDM80_08505; phage(gi100034)                      3.83e-16            NeisseriagonorrhoeaeMKKIPLNEYVEQHGQAKTAKEIGVTQGAISKALRSGRAIFLFSDGKRVKAEEVRAFPSTRL
1638829..1638984                   hypothetical protein; NDM80_08510                                                    N/A                 NeisseriagonorrhoeaeMKKQDRNRLSKKDRRLIKKAMLKAAAKGSDEVYRIAPGLKDGFELLGKQPD
complement(1638961..1639149)       hypothetical protein; NDM80_08515                                                    N/A                 NeisseriagonorrhoeaeMPSDLSFILAKELIRSGSIRLSGSTAKGQAGELAVFIRTLHQKPEESEPNTDDEYLIGLLSK
1639322..1639549                   PHAGE_Burkho_DC1_NC_018452: hypothetical protein; NDM80_08520; phage(gi401723031)     4.72e-05            NeisseriagonorrhoeaeMNQKQTQCKQIVDYIRNKGCITSLEAYQNLKVTRLAARITDLEGRGFVFAKPRMKAGGRGKPVTHYSIVKNGAEV
1639546..1640058                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; NDM80_08525; phage(gi18249881)     7.08e-14            NeisseriagonorrhoeaeMSARLMGMAFKTGIPRGQRFVLVKLCDCANDEGLCYPSQETLAEDTGFAETAVRQHIKWLKDNNFIKSARRQRGRERKSDIYRINVALLEKCYAEAAKRKAARQAKMWEEPLDYEPSDYEPSDFDAKNHQILSGEPSDFDAKNHQILSGEPSDFALRTIGFCAKNHRILR
1640072..1640590                   PHAGE_Aggreg_S1249_NC_013597: HNH endonuclease; NDM80_08530; phage(gi100046)         5.98e-17            NeisseriagonorrhoeaeMSGEPSDFDGSLYVEPSVEPSVEPSVEPSGSNARGARAPAGPHPAKPQTAPPETAPAAKAKKTGRHASELALLAAYGITGQIAEDFLTIRKAKRQPLTETAVRLIAADAEKCGMTALQAAEYAIASGWGSFRADWLQNKTFGRSGNRGGPTHNQTAAVLDAGSYGDMPTTDF
1640605..1641384                   PHAGE_Vibrio_X29_NC_024369: IstB-like ATP binding protein; NDM80_08535; phage(gi658311189)     8.71e-44            NeisseriagonorrhoeaeMALRNASDFLGAYGGGVRVERRQCAEHGGYAAKSVLRGVWTGCPACRKLEAADEMAAYAETLRRGAMRDALEKRIGRSGIAPRFRNCRIENYAVSDSIPGMARAKAAAAEYAANFADVLQTGRSMIFSGRRGTGKNHLACGIAREVIAAGKSALVITVGDMLRTVKDSFGGGGEAGAVGIFVKPDLLVLDEFGAGSLSETDGRILFSVVNARYERLMPMLVLTNLTAEAFRENTDARIRDRLRDGGGKLIPFDWESYRA
1641377..1641628                   hypothetical protein; NDM80_08540                                                    N/A                 NeisseriagonorrhoeaeMRETCFFCKHADFKTQPDTPVRGFAKCAKARNAEERAKHYPRTNPCAAGAFQTASGAAVAKRTAALGEYPGIPEIENRVKTQI
1641642..1642136                   PHAGE_Burkho_BcepSauron_NC_049851: hypothetical protein; NDM80_08545; phage(gi100185)     1.38e-08            NeisseriagonorrhoeaeMTVQNTQTETVRTEAAPQQGGNTNPGYYKNRAFECVGFAQYLNFNLGNAFKYIWRHKEKGGREDLEKALRYLERQRAGAPKFKKLKCRRYEKMYAGLKDCGFDGGTEAALLAVISAAYYIRDGEDNFAWAAACVEDLLEKMPPEAGRAPHPESPMPPETAGGGI
1642331..1642480                   hypothetical protein; NDM80_08550                                                    N/A                 NeisseriagonorrhoeaeMDTLLSIIATLSFAGAATLAVWLLVEASDAVLRRKRDGKGEDDFDGFGY
1642520..1642789                   hypothetical protein; NDM80_08555                                                    N/A                 NeisseriagonorrhoeaeMRTCKACGGTKPLEKGFNAVPRKEGGVYYYKSCKTCRNKAVRQKRAEKRAAAGAGAMTAARLHGYIRAAHAACPILGAGLWTQPAGECA
1642780..1643160                   PHAGE_Entero_cdtI_NC_009514: holliday junction resolvase; NDM80_08560; phage(gi148609431)     3.47e-08            NeisseriagonorrhoeaeMRVIRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGAGAMPSEGAVAVYVRLIPKANKDGGANKTVIDLDNALKVALDALQGVAYHNDRQVRRIAADYADEPVTGGGLAVEVGELDEK
complement(1643177..1643305)       hypothetical protein; NDM80_08565                                                    N/A                 NeisseriagonorrhoeaeMIPNSAAARACTVSDMADLGRNAEPPAIAANNTTYIRHFLQM
complement(1643489..1644451)       PROPHAGE_Shewan_MR-1: IS110 family transposase; NDM80_08570; phage(gi24375433)       8.10e-09            NeisseriagonorrhoeaeMRNAVGLDISKLTFDASAMVGKTEHSAKFDNDSKGLDQFSDRLKSLGCQNLHICMEATGNYYEEVADYFAQYYSVYVVNPLKISKYAESRFKRTKTGKQDAKLIAQYCRSAKESELVKRQKPTDEQYRLSRMIAAYAQIKSECAAMKNRHHAAKDEEAAKAYAEIIKAMNEQLEVLKEKIKEQTEKPNCKEGVKRLETIPAIGRMTAAVLFHHLTSSKFETSNKFAAFAGLSPQQKESGTSVRGKGKLTKFGNRKLRAVLFMPAMVAYRIRAFPDFIKRLEEKKKPKKVIIAALMRKLAVIAYHVHKKGGDYDPSRYKSA
complement(1644962..1645321)       hypothetical protein; NDM80_08575                                                    N/A                 NeisseriagonorrhoeaeMIHKPRYIKIVDENGDFTRVLRLHKFPDTSKVFYFEPMFWLKDGRLARKDSLFEVDYIYGADGCGFLPSNLTEFRKYCRKKHQKFKDDEVLVNRYAVDFLGAKEPPYDDRHVTSVKYFV
complement(1645442..1646527)       PHAGE_Xantho_Xf109_NC_043028: hypothetical protein; NDM80_08580; phage(gi100007)     4.68e-26            NeisseriagonorrhoeaeMIYLFTGNMGAGKTPRVVSMILNNEDGLFKMKLEDGTEADRPLYFCHIDGLDKRKFNARELAEGQIMSAPLRDVIPEGAVLIVGEAHYTYPVRAAGRPVPPYIQELTELRHHGHTVILMTRHPSQLDIFVRNLVSKHVHLERKAIGMKQYYWYKCVTSLDNPAGVSGVEAANWKPPKEAFKYYKSSSRHQKFKKKVPWAVWALIAVVGFVGWKSYGMFQVYSKATDSRIEQEAQKESVVQTMTEQTASSETAPFEHSDNLKPEDFVPTLPEKPESKPIYNTVRQVKTFEQIAGCIDGGKSDCTCYSNQGTPLKEITKIMCKEYVKNGLPFNPYKDERQRTEQAAQSAKADKPQVLVMGGKS
complement(1646537..1646827)       DUF2523 domain-containing protein; NDM80_08585                                       N/A                 NeisseriagonorrhoeaeMPLLSGLIPLLGILLKMLIVRIILATGLTFVTYAGYLAALEKFKGYTANAINSMPSDILNLLLISGFGQGLGYLFGAFSFFIGMHAFKKLTFVFPG
complement(1646828..1647775)       IgG-binding virulence factor TspB family protein; NDM80_08590                        N/A                 NeisseriagonorrhoeaeLAKVALDWNNFVLNRCTFDWNGGGCAVNKGDDFRAGASFSLGRNPKYKEEMDAKKPEEILSLKVDADPDKYIKATGYPGYSEKVEVAPGTKVNMGPVTDRNGNPVQVAATFGRDAQGNTTADVQVIPRPDLTPASAEAPHAQPLPEVSPAENPANNPDPDENPGTRPNPEPDPDLNPDANPDTDGQPGTSPDSPAVPDRPNGRHRKERKEGEDGGLSCDYFPEILACQEMGKPSDRMFHDISIPQVTDDKTWSSHNFLPSNGVCPQPKTFHVFGRQYRASYEPLCVFAEKIRFAVLLAFIIMSAFVVFGSLGGE
1660898..1660914                   attR                                                                                 N/A                 CCGTTTCAGACGGCATC

#### region 6 ####
1648248..1649435                   PHAGE_Ralsto_p12J_NC_005131: ORF7; NDM80_08600; phage(gi156535142)                   1.23e-23            NeisseriagonorrhoeaeMAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGVRRKVFTNIKGLKIPHTHIETDAKKLPKSTDEQLSAHDMYEWIKKPENVGAIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVKRHYHIAANKMGLRTLLEWKVCADDPVKMASSAFSSIYTLDKKVYDLYESAEIHTVNKVKRSKWFYALPVIILLIPLFVGLSYKMLGSYGKKQEEPAAQESAATEQQAVLPDKTEGESVNNGNLTADMFVPTLPEKPESKPIYNGVRQVRTFEYIAGCIEGGRTGCTCYSHQGTALKEVTELMCKDYVKNGLPFNPYKEESQGQEVQQSAQQHSDRAQVATLGGKPQQNLMYDNWEERGKPFEGIGGGVVGSAN
1649650..1650606                   PROPHAGE_Escher_CFT073: transposase; NDM80_08605; phage(gi26248352)                  6.09e-09            NeisseriagonorrhoeaeMNIIGPDISKDTIDATLHKTNGSIHYIKFKNNDDGLKQFRLWIKGNRIRKVYIGMEATGIYYEKAADMLSSYYTVYVINPLKIKDYGKSRFNRTKTDKADSNLIADYIKRHQDTLIPYQIPKNKALQKLINLKNQLQQQQKQIKNRLHSTEEDFIRNIHQDLIDTIQDKMEQVKIAISEQIKKQTDNNHYRNLQTIPSIGKDTASVLYAQLTEKHFKTANQFVSYAGLSPAIIQSGTSVRGRGRLSRYGNRRLKSTLYMPALCAYRFNAFPKLINNLKKAGKPKMVIIVAIMRKLAKPAYYIVKTGQPYDVERHRLNQ
1650896..1651435                   PHAGE_Pseudo_vB_Pae_Kakheti25_NC_017864: endolysin; NDM80_08610; phage(gi388542662)     1.58e-60            NeisseriagonorrhoeaeMTELPWIAEARRHIGLKEIPGAKHNPTIVQWLKETGGFPGAAKSWYFEDETPWCGLFVGHCLGKAGRAVIRDWYRAKAWSMSGLTKLEAPAYGCIAVKPRRGGGHVFFVVGKDAEGRILGLGGNQGNMVSIIPFDPADIDGYFWPSKLIGGKPVPSSPAEGRYRLTAAAATGAQGAGEA
1651435..1651593                   hypothetical protein; NDM80_08615                                                    N/A                 NeisseriagonorrhoeaeMMNPTEFLKARIAEWEAKSKEAGGNADFKAFEFAESEIKNYKAMLKTYERPD
1651577..1651918                   PHAGE_Entero_vB_KleM_RaK2_NC_019526: hypothetical protein; NDM80_08620; phage(gi422936900)     1.62e-06            NeisseriagonorrhoeaeMNGLIKNPKLIAVSVCAVFVAGAWQYDRAAQYRRGYGAAVSEVSERLKAAAVEHAEHARKSSAAYQAQKAAREEKERVRYVQTLKIIEKPVYRNACFDADGVRELNAAVDDGG
1652408..1652788                   type II toxin-antitoxin system PemK/MazF family toxin; NDM80_08625                   N/A                 NeisseriagonorrhoeaeMPLKFQPRERSVIMCDFRGYEEPEMVKKRPVVVIARNRHNGKPVTVVPLSGTEPVPLADCHHKMSENPLPDKPHIQCRAKCDMTATVGLARLDRYKPKGRDRCIPIISEEDFQAVKTAVAKAFKLY
complement(1652989..1653831)       PHAGE_Aggreg_S1249_NC_013597: minor tail protein; NDM80_08630; phage(gi100056)       4.64e-27            NeisseriagonorrhoeaeMQNTISVFSFKSQNVRTQILGAEPWFCLGDVAEILQIQNARQLPLKDQGIQKSSVATKKGNQELLFINEPNLYRVIFRSRKAEAVKFQDWIFEEVIPQIRKTGGYQITPKTTADDRTGLRRAVAALVGRKRIGYSSAYSMIHQRFNVEAVEGIPADKLPEAVAYVHALTLHTGLAGEVPDREPLPAPQPALPIDGNSLADIAAMVYYGTRMIESGKDVSAPLKQLGNRQAVTMLTVWHETRSILKRSAAALEVLRGYADKDASGRIAACLEGIYGKAAAR
