gi|00000000|ref|JX182975.1|  Citrobacter freundii plasmid pNDM-CIT, complete sequence. 288920, gc%: 47.73%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
352..1011                          PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; -; phage(gi937456276)                         5.00e-167           CitrobacterfreundiiMEKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQGGA
complement(1212..1589)             hypothetical protein; -                                                              N/A                 CitrobacterfreundiiMKDYLCKKLFNRLSGTLVIRARCGNNITGLACCNILYPSPRYSGQLHIKELYVSQCDRNKGTGKAIMRFIARLALEQECLSLSWNAEKSNPGANRFYQALGGRINDHIVNYYLHGESLSKLASGI
complement(1900..2904)             PHAGE_Escher_500465_2_NC_049343: putative transcriptional regulator; -; phage(gi100045)     4.44e-10            CitrobacterfreundiiMENIALIGIDLGKNSFHIHCQDRRGKAVYRKKFTRPKLIEFLATCPATTIAMEACGGSHFMARKLEELGHFPKLISPQFVRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTESQQAMRALHRVRESLVQDKVKTTNQMHAFLLEFGISVPRGAAVISRLSTLLEDNSLPLYLSQLLLKLQQHYHYLVEQIKDLESQLKRKLDEDEIGQRLLSIPCVGTLTASTISTEIGDGKQYASSRDFAAATGLVPRQYSTGGRTTLLGISKRGNKKIRTLLVQCARVFIQKLEHQSGKLADWVRDLLCRKSNFVVTCALANKLARIAWALTARQQTYVA
complement(2983..5949)             PROPHAGE_Xantho_33913: Tn5041 transposase; -; phage(gi21231545)                      1.39e-45            CitrobacterfreundiiMPRRSILSAAERESLLALPDSKDDLIRHYTFNDTDLSIIRQRRGPANRLGFAVQLCYLRFPGVILGVDELPFPPLLKLVADQLKVGVESWNEYGQREQTRREHLSELQTVFGFRPFTMSHYRQAVQMLTELAMQTDKGIVLASALIGHLRRQSVILPALNAVERASAEAITRANRRIYDALAEPLADAHRRRLDDLLKRRDNGKTTWLAWLRQSPAKPNSRHMLEHIERLKAWQALDLPTGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALATEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLYGRIGQALIDAKQSGRDAFAAIEAVMSWDSFAESVTEAQKLAQPDDFDFLHRIGESYATLRRYAPEFLAVLKLRAAPAAKNVLDAIEVLRGMNTDNARKLPADAPTGFIKPRWQKLVMTDAGIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPEKFTSLKQSSELPLAVATDCEQYLHERLTLLEAQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMVLPHVKITELLLEVDEWTGFTRHFTHLKSGDLAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAGHWGDGTTSSSDGQNFRTASKAKSTGHINPKYGSSPGRTFYTHISDQYAPFHTKVVNVGLRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGDAAYDALKPMIGGTLNIKHVRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVLWNTVYLERAAHALRGNGHAVDDSLLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
complement(5952..6512)             PHAGE_Escher_500465_1_NC_049342: hypothetical protein; -; phage(gi100035)            7.55e-33            CitrobacterfreundiiMTGQRIGYIRVSTFDQNPERQLEGVKVDRAFSDKASGKDVKRPQLEALISFARTGDTVVVHSMDRLARNLDDLRRIVQTLTQRGVHIEFVKEHLSFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKSLSSERIAELRQRVEAGEQKTKLAREFGISRETLYQYLRTDQ
complement(6552..6836)             TnpM; -                                                                              N/A                 CitrobacterfreundiiMRCRPSLVRGRAAQVNPGGFTTPARRPSVPHRTAGCGKSSLRPLMAGSSPSLPDGSNPSAAIVQSASDVQCSRLLKTTNCVRIGLNFEFIDISR
complement(6805..7818)             PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; -; phage(gi100002)          4.17e-12            CitrobacterfreundiiMKTATAPLPPLRSVKVLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
7963..8460                         PHAGE_Bacill_Bp8p_T_NC_047744: hypothetical protein; -; phage(gi100167)              1.86e-33            CitrobacterfreundiiMNSESVRIYLVAAMGANRVIGNGPNIPWKIPGEQKIFRRLTEGKVVVMGRKTFESIGKPLPNRHTLVISRQANYRATGCVVVSTLSHAIALASELGNELYVAGGAEIYTLALPHAHGVFLSEVHQTFEGDAFFPMLNETEFELVSTETIQAVIPYTHSVYARRNG
8572..8862                         hypothetical protein; -                                                              N/A                 CitrobacterfreundiiMFIQTAFSFSGVIQCLFCLFSGLRLHGLRRFSVFLASSPCVASASSYRFCSAVPPRWRSVFSRLAPVAKFKLSVLASGSNISVKPTRILRSAYLAR
8868..9659                         AadA2; -                                                                             N/A                 CitrobacterfreundiiMREAVTIEISNQLSEVLSVIERHLESTLLAVHLYGSAVDGGLKPYSDIDLLVTVAVKLDETTRRALLNDLMEASAFPGESETLRAIEVTLVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPAMIDIDLAILLTKAREHSVALVGPAAEEFFDPVPEQDLFEALRETLKLWNSQPDWAGDERNVVLTLSRIWYSAITGKIAPKDVAADWAIKRLPAQYQPVLLEAKQAYLGQKEDHLASRADHLEEFIRFVKGEIIKSVGK
9823..10170                        PHAGE_Acinet_Lazarus_NC_049493: hypothetical protein; -; phage(gi100008)             2.92e-07            CitrobacterfreundiiMKGWLFLVIAIVGEVIATSALKSSEGFTKLAPSAVVIIGYGIAFYFLSLVLKSIPVGVAYAVWSGLGVVIITAIAWLLHGQKLDAWGFVGMGLIIAAFLLARSPSWKSLRRPTPW
10164..11003                       Sul1; -                                                                              N/A                 CitrobacterfreundiiMVTVFGILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLGATVGLPVKDLGPASLAAELHAIGNGADYVRTHAPGDLRSAITFSETLAKFRSRDARDRGLDHA
11408..12949                       ISCR1; -                                                                             N/A                 CitrobacterfreundiiMSLARNATASQSPTQTNGYERHQPDQTLLYQLVEQHYPAFKASLEAQGQHLPRYIQQEFNDLLQCGRLEYGFMRVRCEDCHHERLVAFSCKRRGFCPSCGARRMAESAALLIDEVFPKEPIRQWVLSFPFQLRFLLARHPQLMGQVLSIVYRTLSTHLIKKAGYTKASAQTGSVTLIQRFGSALNLNVHYHMLFLDGVYAEDDYGKQRFHRVKAPTYDELNTLAHTLSHRIARCMEKRGILERDAENTWLTLEEGEDDTLTQLHGASVTYRIAVGPQQGRKVFTLQTLPGREDKADSSSRVANHAGFSLHAGVMAEAHQRDKLERLCRYISRPAVSEKRLALTANGQVRYELKTPYRNGTTHVIFEPLDFIAKLAALVPKPRVNLTRFHGVFAPNSKHRVQVTPAKRGKKPDKSEGLDTNWRDKSPAERHRAMTWMQRLKRVFNIDIEVCEHCGGHVKVIASIEDPKVIEQILKHLKQKTAKANAAKQRELPPERAPPLTPSLFDPSQSRLFD
13161..13181                       attL                                                                                 N/A                 TGGTTTATACTTCCTATACCC
13262..14293                       hypothetical protein; -                                                              N/A                 CitrobacterfreundiiMTASTIRLRRWLAGLALLLALPATSAVAQDFELPPVDEVFVLSAQATAPDRIEVRWRIADGYYLYRHRTSVKADAAFTGATMALPKGKAYRDEFFGDVETYRKELLGTLTGTPAAGASATTLTVKYQGCADAGVCYPPQTRTLKVALPGEAGAGGFGCKARGLHDYVVKNGSADHPNAEVKFALGDVVNTMIGCTNGETIMLCHDTSLPRPYSLGFRVQGTEGLWMDVNKSIYLEGKSPQPHRWEPAEGWFAKYDHPLWKRYADLAAGAGHGGMDWFVIHAFVEALKAKAPMPIDIYDALAWSAITPLSEQSIAEGNRTLDFPDFTRGQWRTRKPIFALNDAY
complement(14304..14942)           phosphoribosylanthranilate isomerase; -                                              N/A                 CitrobacterfreundiiMPAKIKICGISTPEALDATIAARADYAGLVFYPASPRAVTSNVAGALTSRAAGQIAMVGLFVDADDAVIADALVAAKLNALQLHGSESPERVAQLRARFGKPVWKALPVASASDVARAAAYAGAADLILFDAKTPKGALPGGMGLAFDWSLLAGYRGALPWGLAGGLNPTNVAEAIARTGAPLVDTSSGVESAPGVKDTDKITNFAFAVRLA
complement(14947..15312)           BleR; -                                                                              N/A                 CitrobacterfreundiiMADHVTPNLPSRDFDVTEAFYAKLGFATSWKDRGWMILQRGGLQLEFFPYPDLDPATSSFGCCLRLDDLDAMVALVNAAGAEEKSTGWPRFKAPQLEASGLRIGYLIDPDCTLVRLIQNPD
complement(15316..16128)           NDM-1; -                                                                             N/A                 CitrobacterfreundiiMELPNIMHPVAKLSTALAAALMLSGCMPGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR
16673..17389                       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; -; phage(gi100027)               1.75e-175           CitrobacterfreundiiMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
complement(17864..18877)           PHAGE_Bacill_vB_BtS_B83_NC_048762: hypothetical protein; -; phage(gi100002)          4.17e-12            CitrobacterfreundiiMKTATAPLPPLRSVKVLDQLRERIRYLHYSLPTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
24220..24240                       attR                                                                                 N/A                 TGGTTTATACTTCCTATACCC

#### region 2 ####
complement(144059..145327)         PHAGE_Prochl_P_SSM3_NC_021559: cytosine methyltransferase; -; phage(gi514231427)     2.15e-07            CitrobacterfreundiiMSNLNSDLIARIYAASDTPLTNEELYREVQRETGMSDAELQKMKAFGSDKMRTSGVKHQVRWYQQTLRQAGVIERVPEKRGVWRYAFKNDKKLHESWDKLCVVGFSTSLGASVFGNAYAFFSNINEQIHLCLTSPPFLLRNARNYGHGGGRGEQAYIDWLLRILEPIVKQLVPGGSVALNVTQDSFNPGRPSRSLYLERLTLALCDKLGLELMDRLNWVNRAKPPSPTHWACKQRVQLCSSYEPVLWFTNDAQKVRSNNMRVLQPHSEQHQKLQASGGENRTTFYGDGAYQLKNGAFGNKTEGTIPKNTLMFGNACPDTRLCHRIARELGFPLHGATSPTRLAAFLIEFLTRPGDLVVEPFAGLHKVPVAAERLGRRWYATDKIMEWLGISRSLFTEMPGYQSSPILDDLVALYRDELREGG
complement(145987..146622)         PHAGE_Caulob_CcrPW_NC_048046: hypothetical protein; -; phage(gi100366)               3.66e-34            CitrobacterfreundiiMKSKFAELPVKNGKSGNWTLDSFVITPEKAQTLKLRAEYTKDQDEYIPAGVYRRLSCDNEVVMSNTPMEIRTCEAFIERATGRILINGLGLGMVLHAILQKPDVTHVTVIEKSQDVMNLVSKAFAHDPRVEIILADALEYCPPAGVTFNVCWHDIWPDFSRSNLDEMEALERKYLHLCDWQDSWGKEQCEAALIRFAALESSLESLMQKGK
complement(147112..147453)         toxin; -                                                                             N/A                 CitrobacterfreundiiMKTLPATTQRAVKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSEERVIQEHIDTGISLADAVNFLVEKYELVRIDRKGFSWQEQSPYLRAVDILRARQVTGLLRQSRKNSVR
complement(147474..147791)         antitoxin; -                                                                         N/A                 CitrobacterfreundiiMSNITLGLQRDITPRLGARLVQEGNRLHYLADRASITGKFSEAECLKLDVVFPNFISQMESMLTTGEMNPRHAHCVTLYHNDFTCEADTLGSCGYVYIAVYPTQR
complement(147810..148031)         PHAGE_Klebsi_phiBO1E_NC_047748: hypothetical protein; -; phage(gi100006)             1.81e-11            CitrobacterfreundiiMKIISKSDAMRLHHQHPQSRIFRYCTGKYQWHGSIRHYFGKDIPDVPGVLAVYAERRQDRYGPYACLMSITLN
complement(148041..148517)         YkfG; -                                                                              N/A                 CitrobacterfreundiiMKQLSFLPGEITPQDRRLIQRALRVLDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGTINRTEVHPREVVKRALYFNAAAVILAHNHPSGETTPSQADKALTQRLVQVLQLVDIRVPDHLIIGGRQIYSFAEHGLL
complement(148533..149012)         PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; -; phage(gi162135127)              9.56e-18            CitrobacterfreundiiMYNDTTSKHNDHHNHSQKEPTGDKLLHATVMPDGMRISFWPQHFGTIPQWITLEPRIFAWMNRFCADYSGGIWQFYTLSNGGAFMAPDADRNETWSLFNNLNGNGVEMSAEAAGIAVCLIEYSHHACRTECDAMTAHYYRLRDYALQHPEAHAILRIID
148569..148940                     hypothetical protein; -                                                              N/A                 CitrobacterfreundiiMLQGVVPQTVIVRGHRVTLCTAGVMAVFNQADGNTCGFCAHFHAITVQIIEQTPCLIAVSIGCHKGPAVAQRVKLPDATAVIRAEAVHPGEDAGLQGYPLRNSAEVLRPEADTHSIRHHSGMK
149791..150888                     PHAGE_Bacill_vB_BceS_MY192_NC_048633: minor tail protein; -; phage(gi100055)         4.35e-07            CitrobacterfreundiiMTAKDQFAAHVGLDWADKKHDVCVQFKNGDRIFHVIEHTPEALDIWLNELHQRAKGRIAIAVELKKGPVVYALQKYPFVTVFPVHALSLARYRQAFWPSGAKDDPQDAELALDLMLRYPHKIKAIEADNPDIRLLQQLVEQRRLLVEDKRRFVNRLINTLKQYYPQPLEWFSHRDSSLFCELIIRWPSLQQLKRARSDTVRHFMNAKGGPAVAYTEQRVASIASAIPLTTDKTVIEANALMATALASQIKLTGDLIRTYDERIESLFDTLPDAELFKSLPGMGPCMGPRMLAALGDNRDRFNSAEEIQNYAGIAPVTERSGQKSWVHWRWQCAKFVRQTFVEWTAKTVNSSYWARLYVSVQREPY
complement(150899..152437)         PHAGE_Stx2_c_1717_NC_011357: transposase; -; phage(gi209447153)                      0.0                 CitrobacterfreundiiMNNTSSDEILRLKQRLAEQEALNRALLEKLADREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLKVLQKESDTLTGRVDDPEVQRSLRQTRTRRPFPESLPRDEKRILPAESCCPECGGSLSYLGEDAAEQLELMRSAFRVIRTVREKHACTQCDAIVQAAAPSRPIERGIAGPGLLARVLTSKYAEHTPLYRQSEIYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLTDGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSALAPAVWFAYSPDRKGIHPQSHLAGFSGVLQADAYAGFNELYRNGQITEAACWAHARRKIHDVHVRTPSAQTEEALKRIGDLYAIEAEIRGMPAEQRLAERQQKAKPRLKSLESWLREKIKTLSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRTVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRHVLNVIADWPVNQVSELLPWRVTLQTE
complement(152487..152834)         PHAGE_Stx2_c_1717_NC_011357: transposase; -; phage(gi209447152)                      1.94e-75            CitrobacterfreundiiMIPLPTGTKIWLVAGTTDMRNGFNGLAAKVQTALKDDPMSGHVFIFRGRSGNQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTPAQLAMLMEGIDWRQPKRLLTSLTML
complement(152831..153211)         PHAGE_Stx2_c_1717_NC_011357: truncated transposase; -; phage(gi209447151)            4.09e-77            CitrobacterfreundiiMQKNVTPGRRKGCPNYSPEFKQQLVAASCEPGISISKLALENGINANLLFKWRQQWREGKLLLPSSESPQLLPVTLDAADVQPEPPTESPEALSISCEITFRHGTLRLNGTVSEKFLALLIQELKR
