gi|00000000|ref|MF547665.1|  Clostridioides difficile strain LIBA-2945 genomic sequence. 57676, gc%: 51.13%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(1059..2630)             PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; ProphageCTn5LIBA2945_00002; phage(gi77020163)     9.70e-25            [Clostridioidesdifficile]
complement(2569..4335)             PHAGE_Bacill_phBC6A51_NC_004820: Site-specific recombinase; ProphageCTn5LIBA2945_00003; phage(gi31415812)     4.12e-23            [Clostridioidesdifficile]
complement(4379..4555)             hypothetical protein; ProphageCTn5LIBA2945_00004                                     N/A                 [Clostridioidesdifficile]
complement(4548..4970)             sigma-70 region 4 type 2; ProphageCTn5LIBA2945_00005                                 N/A                 [Clostridioidesdifficile]
complement(5091..6062)             N-acetylmuramoyl-L-alanine amidase family 2 protein; ProphageCTn5LIBA2945_00006      N/A                 [Clostridioidesdifficile]
complement(6065..6487)             PHAGE_Bacill_WBeta_NC_007734: phage holin; ProphageCTn5LIBA2945_00007; phage(gi85701395)     7.64e-33            [Clostridioidesdifficile]
complement(6568..9042)             PHAGE_Geobac_GBK2_NC_023612: glycoside hydrolase; ProphageCTn5LIBA2945_00008; phage(gi589893782)     1.34e-38            [Clostridioidesdifficile]
complement(9039..9617)             hypothetical protein; ProphageCTn5LIBA2945_00009                                     N/A                 [Clostridioidesdifficile]
complement(9628..9822)             PHAGE_Geobac_GBK2_NC_023612: hypothetical protein; ProphageCTn5LIBA2945_00010; phage(gi589893780)     1.42e-13            [Clostridioidesdifficile]
complement(9841..12363)            PHAGE_Geobac_GBK2_NC_023612: minor structural protein; ProphageCTn5LIBA2945_00011; phage(gi589893779)     1.61e-119           [Clostridioidesdifficile]
complement(12367..13134)           PHAGE_Geobac_GBK2_NC_023612: hypothetical protein; ProphageCTn5LIBA2945_00012; phage(gi589893777)     1.51e-32            [Clostridioidesdifficile]
complement(13150..15819)           PHAGE_Strept_Dp_1_NC_015274: TMP; ProphageCTn5LIBA2945_00013; phage(gi327198366)     1.50e-47            [Clostridioidesdifficile]
complement(16017..16397)           hypothetical protein; ProphageCTn5LIBA2945_00014                                     N/A                 [Clostridioidesdifficile]
complement(16411..17022)           PHAGE_Paenib_Harrison_NC_028746: major tail protein; ProphageCTn5LIBA2945_00015; phage(gi971482321)     6.64e-31            [Clostridioidesdifficile]
complement(17125..17460)           hypothetical protein; ProphageCTn5LIBA2945_00016                                     N/A                 [Clostridioidesdifficile]
complement(17457..17888)           hypothetical protein; ProphageCTn5LIBA2945_00017                                     N/A                 [Clostridioidesdifficile]
complement(17881..18219)           head-tail joining family protein; ProphageCTn5LIBA2945_00018                         N/A                 [Clostridioidesdifficile]
complement(18216..18527)           putative DNA packaging protein; ProphageCTn5LIBA2945_00019                           N/A                 [Clostridioidesdifficile]
complement(18547..19749)           PHAGE_Entero_phiP27_NC_003356: putative major capsid protein; ProphageCTn5LIBA2945_00020; phage(gi18249904)     2.15e-48            [Clostridioidesdifficile]
complement(19763..20362)           PHAGE_Geobac_E2_NC_009552: putative Clp peptidase; ProphageCTn5LIBA2945_00021; phage(gi148747731)     7.92e-49            [Clostridioidesdifficile]
complement(20400..21758)           PHAGE_Entero_mEp235_NC_019708: portal protein; ProphageCTn5LIBA2945_00022; phage(gi428781813)     1.60e-94            [Clostridioidesdifficile]
complement(21776..23377)           PHAGE_Gordon_Zirinka_NC_031097: hypothetical protein; ProphageCTn5LIBA2945_00023; phage(gi100002)     1.81e-98            [Clostridioidesdifficile]
complement(23492..23779)           hypothetical protein; ProphageCTn5LIBA2945_00024                                     N/A                 [Clostridioidesdifficile]
complement(23904..24104)           (NiFe) hydrogenase maturation protein; ProphageCTn5LIBA2945_00025                    N/A                 [Clostridioidesdifficile]
complement(24094..24570)           PHAGE_Bacill_G_NC_023719: gp514; ProphageCTn5LIBA2945_00026; phage(gi593777969)      5.30e-17            [Clostridioidesdifficile]
complement(24668..25618)           putative amidoligase enzyme; ProphageCTn5LIBA2945_00027                              N/A                 [Clostridioidesdifficile]
complement(25748..26065)           hypothetical protein; ProphageCTn5LIBA2945_00028                                     N/A                 [Clostridioidesdifficile]
complement(26055..26291)           PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; ProphageCTn5LIBA2945_00029; phage(gi100310)     8.40e-06            [Clostridioidesdifficile]
complement(26275..26994)           virulence-like protein; ProphageCTn5LIBA2945_00030                                   N/A                 [Clostridioidesdifficile]
complement(27093..29030)           PHAGE_Entero_P1_NC_005856: Dmt; ProphageCTn5LIBA2945_00031; phage(gi46401691)        1.09e-26            [Clostridioidesdifficile]
complement(29017..30255)           PHAGE_Strept_EJ_1_NC_005294: transferase; ProphageCTn5LIBA2945_00032; phage(gi39653711)     2.11e-89            [Clostridioidesdifficile]
complement(30252..31037)           S-adenosylmethionine synthetase; ProphageCTn5LIBA2945_00033                          N/A                 [Clostridioidesdifficile]
complement(31042..31599)           terminase small subunit; ProphageCTn5LIBA2945_00034                                  N/A                 [Clostridioidesdifficile]
complement(31731..32078)           PHAGE_Burkho_phiE125_NC_003309: putative class I holin; ProphageCTn5LIBA2945_00035; phage(gi17975232)     1.29e-15            [Clostridioidesdifficile]
complement(32211..32621)           FliA/WhiG subfamily RNA polymerase sigma-28 subunit; ProphageCTn5LIBA2945_00036      N/A                 [Clostridioidesdifficile]
complement(32618..32845)           hypothetical protein; ProphageCTn5LIBA2945_00037                                     N/A                 [Clostridioidesdifficile]
complement(32901..34265)           PHAGE_Entero_phiFL4A_NC_013644: DNA helicase; ProphageCTn5LIBA2945_00038; phage(gi281416462)     5.98e-163           [Clostridioidesdifficile]
complement(34246..34527)           PHAGE_Endosy_APSE_1_NC_000935: hypothetical protein; ProphageCTn5LIBA2945_00039; phage(gi9633591)     1.11e-21            [Clostridioidesdifficile]
complement(34524..35063)           hypothetical protein; ProphageCTn5LIBA2945_00040                                     N/A                 [Clostridioidesdifficile]
complement(35314..37653)           PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; ProphageCTn5LIBA2945_00041; phage(gi100019)     0.0                 [Clostridioidesdifficile]
complement(37646..38077)           PHAGE_Yersin_vB_YenM_TG1_NC_028820: hypothetical protein; ProphageCTn5LIBA2945_00042; phage(gi971746227)     1.98e-12            [Clostridioidesdifficile]
complement(38091..40031)           PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; ProphageCTn5LIBA2945_00043; phage(gi100018)     0.0                 [Clostridioidesdifficile]
complement(40097..40282)           hypothetical protein; ProphageCTn5LIBA2945_00044                                     N/A                 [Clostridioidesdifficile]
complement(40303..40878)           PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; ProphageCTn5LIBA2945_00045; phage(gi100017)     3.79e-61            [Clostridioidesdifficile]
