gi|00000000|ref|MPFN01000001.1|  Clostridioides difficile strain 7482-DH/ST42 7482_contig000001, 233069, gc%: 31.19%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
81088..81101                       attL                                                                                 N/A                 TATAAAAAAAGAGT
84027..85163                       PHAGE_Geobac_GBSV1_NC_008376: DNA integration/recombination protein; BGV11_00390; phage(gi115334655)     1.04e-27            ClostridioidesdifficileMARKGENIYKRKDGRWEGRYIKSRSSTGKANYGYVYAKSYREVKAKLISQSSCTSNSVTVDPEISSDQFEQVAMEWFQAICPKVKESTSNKYRNLLSSYILPVFGSKQLRDITHEFIETQCNFFLVSGGLKENGLSSKTVSDILSLIRNVLQFATRNGKAISCDARSIQIKRQTKEMRVLSRAEQEKLCQYLYSNLDSCNIGILVCLFTGLRVGEICALRWEDVSFSDYTIHVHQTLQRIQDRTNSEYKTRIVVTTPKSACSIRTIPVPHGLMTILTAHKASSTGYILTNSDQNPLEPRTMQNHFKKVLKNSGITSANYHSLRHTFATRCIELGFDVKSLSEILGHASVNITMNRYVHPSMDLKRENMQRLSDLLAVK
85424..85801                       PHAGE_Liberi_SC1_NC_019549: hypothetical protein; BGV11_00395; phage(gi423262485)     1.45e-05            ClostridioidesdifficileMEVIETQPEIDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLAFVLEKNFDYFLLDTPYAKCDSIIDNEIAAKLKKCNVTTLITVGKLIDVLIDQQEMIKKAELD
complement(85964..86518)           PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; BGV11_00400; phage(gi115334657)     1.72e-11            ClostridioidesdifficileMKTAEHIIETVDKLVRKYHTRDPYELCQLLGIKIHYYDLQKKLKGFFYYQSRQKNIVIDHNVNGILERILVAHELGHAVLHTKIAMMHGFQEMEVFDDRSIEENEANFFAAELLLEDGKVLECLSEHTFFETAKMLYVPAALLDYKFSLLHEKGELVNSMYIRKADFLKEDLHAYDNDIGYGDI
complement(86570..87019)           PHAGE_Geobac_GBSV1_NC_008376: immunity repressor protein; BGV11_00405; phage(gi115334658)     6.91e-12            ClostridioidesdifficileMTFGEKIKEARLAMNLSQTELAQMTGISERSLYTYEQLGTLPRKSNIRKLAEALHISVSYLLDESETDSQSHIDQDMFILEAKENFGSKGAKEAQEVLGRVNSLFAGGELDEDAKDVFFQAIMSVYMDSKKTAREKYTPKKYRKHKDKE
87306..87869                       hypothetical protein; BGV11_00410                                                    N/A                 ClostridioidesdifficileMSRYNTQVLSSIRMLCRMQNIDEKVLYERAKLILSIYREVCWSTIDRANDVCDTLICTYGDSLDGALIYLENFAPDEARERFEERIRSLFETKWIIELVDMAMLKIREYPDKGALYCEIISKAYLNRFKYRESEMLEVLNMERSTYYDRKKEAILLFGLSLWGTAIPKLKDFLESAREEEALCYCEC
88222..88437                       PHAGE_Lister_A118_NC_003216: putative repressor protein; BGV11_00415; phage(gi16798819)     3.81e-09            ClostridioidesdifficileMYYDLVESGKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIFLGRE
88952..89359                       PHAGE_Clostr_c_st_NC_007581: PemK family transcriptional regulator; BGV11_00420; phage(gi80159713)     3.79e-09            ClostridioidesdifficileMMKENWVYCRGDIYCAKLDPVVGSEQGGIRPVIVIQNDTGNKHAPTLIVATVTTRIHKKANMPTHFVIYDNPAFKEASVVQLEQIRTIDKSRIDNYLGKVTPREMVAIEKALSVSLAMEQLKKRSPKHKAKRAKE
89366..89602                       PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; BGV11_00425; phage(gi22855124)     2.77e-07            ClostridioidesdifficileMFEERIAAMNQRTEEAMAANAVQFDKRTYTVDEIQDILGISRTSAYNLVKKKVFHSVRIGGSIRISKKSFDEWLDHQM
89720..90343                       DNA-binding protein; BGV11_00430                                                     N/A                 ClostridioidesdifficileMAEMRKRTSMSVLEMGRMLGLGKTESYWLIKKNYFKTILVGNTMRVMIDSFEEWYANQFKYQKVDGTPPGEELKKTTYSMEELGQRLGLKEATAYELVAKGHFDVVDVLGKRRVTKESFERWYASQTDYRTVEDQELDADIMASTYGLPEMARMLGVHRQTIYYIVANEDFELIKVGRYKRATKESFEKWYHNQTRYQLAEDRQERS
90348..91721                       PHAGE_Clostr_phiCD211_NC_029048: Phage integrase family prophage LambdaCh01; BGV11_00435; phage(gi981220898)     7.64e-39            ClostridioidesdifficileMASIVKRKKKYSVVYTYTDENGNKRQKWETFETNAEAKKRKLQVEYEQESGTFIPPSAKTVNDLLDEYMSIYGVNTWAMSTYESRKSLIANYIRPLIGDMKLEDVTPRIMDKYYRDLLSVKAVSSKYVKARTEYLTPHTVREVHKTLRNAFNQAVKWELMTRNPVEHATLPKEEHKTRDIWTAEVLQKALEACDDDILRLAINLAFSCSLRMGELLGLTWDCIDISPTSIELGQASIFVEKELQRVNREAMADLDGKDIMFKFPPTFASTHTALVLKTPKTKTSVRKVFLPKTVAEMLVQRKADIEELKDLFGDEFVDFNLVFCSSNGKPIEGQVINRAFNKLIEEKGLPKVVFHSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDDDRRLNAERMEAAFYSGRQATPEPVQPAATESSADDKELLLKLLQNPEMAALLKSLAKTL
93069..93082                       attR                                                                                 N/A                 TATAAAAAAAGAGT

#### region 2 ####
204446..204457                     attL                                                                                 N/A                 ACGAGGGGAGTC
complement(218311..219546)         PHAGE_Marino_P12026_NC_018269: replicative DNA helicase; BGV11_00915; phage(gi399528354)     4.01e-37            ClostridioidesdifficileMLNEDMFYHEEHKYIFNAIKEINKRNEVIDIITLTEELKRKGHLNNIGGISYITSLSTIVPTVSNFMSYVSIVIEKYKNRNIIDKFKKFNLGEIDDNTLIYQLENDINKANQKLIKKDSSITAISERAFEYINDEVNEGIKTGIKFLDDTIGGLYGGELTTIAAKSGRGKTALALQILRNVIFQGKKVLFISGEMSDIQILFRNIASLTGISVVKMKNRNLNDEEIVKYIQALSIINQENNLYINDSVNTISGIKREIKSIKPSLVIIDYLQILDYEGKEVGEAKFADLSRQIKKITLDFNIPVIQLAQLNDELKDERPKGDRVMRSSKQIYMDSNSVIYIHRPTEKEALNYCKTMGIEDIRELRRREKGFGANLSEIIVAKNRDGESGFRPYWYIGNLFSFEECKKIQEI
complement(219658..220401)         PHAGE_Bacill_Palmer_NC_028926: DnaD/DnaB replication protein; BGV11_00920; phage(gi971756452)     9.79e-31            ClostridioidesdifficileMSNKGWIKLYRELLDKSIWKDIKPERKVILITLLLMASHKENHVFIDNKRIKIKSGQFISSYSKIAERCGKGVSYQMVRSCLLVFKNAGFLTYETTNKYIVITIENWELYQENIENQQPNQQTINNQSTTIKNIKNENNIIYSEIISKFNSTCIELSKVKKLTDTRKRRINSRIKEYDKETVLEVINIVSKTSFLNGNNNTGWKANFDWIMNSSNFTKILEGNYNSKEIVINKETGIYNPDDSQLKW
complement(220423..220737)         hypothetical protein; BGV11_00925                                                    N/A                 ClostridioidesdifficileMKENNNLEVLKTLQATLNIIVKNEEEAQEKKQGYKIIENAKRNKAELITCKEASKLYPIGESKFRQLCHSKNKGFPCIWINNRVYIIKNKLDDWFIENANGIKL
complement(220741..220941)         PHAGE_Brevib_Abouo_NC_029029: XRE family transcriptional regulator; BGV11_00930; phage(gi971767218)     5.27e-12            ClostridioidesdifficileMGINLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELFFSKED
221088..221852                     PHAGE_Bacill_phi105_NC_004167: immunity repressor; BGV11_00935; phage(gi22855027)     9.47e-09            ClostridioidesdifficileMQIGKNLKNIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEKTIFYFDIENEVMTNEDVLYLLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLLLGAWSDKDQYYKLGEKLELNENQVYNWILSDCISNTELDFSLHPDDIKEIIKNDVLTKQSIDELLDIGLSEENIETIYDYFSDSTDNGSNIRLKKLISQKENITIKNNDYFKLLQENNELKEKNEKLENTLKEIKKLLTKI
221909..222107                     hypothetical protein; BGV11_00940                                                    N/A                 ClostridioidesdifficileMNKSYMLKYTYKCPTNLFHGDKKYTLTYTKRVMSNLVYDMGSRKLLYMFRSTIIVYIGEIMA
222104..222595                     PHAGE_Bacill_Palmer_NC_028926: transcriptional regulator; BGV11_00945; phage(gi971756443)     4.13e-08            ClostridioidesdifficileMMNNTIGEKIKQYRKSINMSRDELANKIGCSVHAIAKYEQNQRMPSLDMIRKIATALSIAINKLIVEENDLDTLTNNNINLKVFDKELDLVIHILENYGYDIKTDYKKKFEITDNADTIKPINLNFSDFKDFSKNLNWVINGLVENFIQENSNGLIEDEDEEY
222687..223439                     hypothetical protein; BGV11_00950                                                    N/A                 ClostridioidesdifficileMNKSYIPKYTHKFPTNLPHGDKKYTLTYIRRMISEFVYDMGNLENNPFTFPEVQTLLDGITVGGHKLSDQNQILNIKSSWDYVIKLSNKENLSLNKDTICSIHKIVAKDEALIVGDFRNGNIGIAGTTQYECIEATLLNDLFVNDINIINKITNPLEKAIIINLWLSYCQFFYDGNKRTARLTSNLILISNDIGVLSIPAKHKQEYNTLMLNFYETLEADEVIKFLLEKCITFFDGYNYKSYKELFKNGN
223429..224595                     PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; BGV11_00955; phage(gi971821285)     2.52e-39            ClostridioidesdifficileMATKRANGEGSIGKYKDGWRSRIMIGYNEDGKPIRKEFYGKTQKEVKDKLDAYKKQYYLSSDISDDKITLEHWFYNWLFEYRIKDLKPKSFERYESIYRNYIKDTDLGNVKLKDLRVSHIQKYYNRLLDSNKSIPTIRQINTKLKTCLSEAEKQGLIQRNYCTMVNIPVEKKENKLEILTLEQQKSFIKAIDGHKLEVLFLLALGTGLRLGELLGLKWFDIDFKKSNLTVKRTLQRTYFIDKTGNRELKVLEQEPKTSNSYRTVPIPKDVLNKLKEHKVNQNSDILKAGELYRNDNYVFCNELGIPIDDKRPLRNLKSILNSLDIEPIKFHGLRKTYATRLFENDVPPKTVQVLMGHYDISITLNIYTQVMEDKKVEAVEKLDKIFSL
complement(224711..224941)         hypothetical protein; BGV11_00960                                                    N/A                 ClostridioidesdifficileMEANKTLLQILYKKIILEFSKQTGKSLEESMDYLYTSETYKLISEGVADMHCKGHIYLAQELMLENGLMYHKGYPR
complement(224947..225426)         PHAGE_Geobac_E3_NC_029073: hypothetical protein; BGV11_00965; phage(gi985758366)     4.85e-06            ClostridioidesdifficileMIVYHGSYCVVKTPSITFSRDSLDFGKGFYVTSIKTQAINWTERFKKRGKKAYLNSYSLDIDKLKENCKVKIFNSYNLEWLDFIIECRNMSDIYMKYDIIIGGIADDKIYNTIELYQDNLIEKDEALKRLKYYKPNEQICITNQNVIDKYLKFRYEEEV
complement(225426..225641)         transcriptional regulator; BGV11_00970                                               N/A                 ClostridioidesdifficileMDERKLEFSIFCIEALAEKLNIDSEGVYKLLKHDTDILDNYIIPCYEALHSQSKGYIVEDLMQVLKEKGVI
complement(225957..226306)         tRNA                                                                                 N/A                 GGGGGCGTAAAGGTTTCGACGTGGGTTTGGAACTTGAGGCTGCATGTCGTGTTACTCTGGGTCACGTAAAAACTGGGGAACTTTAAAATAAACGCAGACGATAATTTCGCGATAGCAGCCTAGTTGCTGCTCGTCCCTCTTAGTCCTCCTGCCGACTAAGACTGGACGTCATTATGCAGGGAACTACTTTAGGGGTGTCTCGACTTGAAGTAGATTAATTGGGACTGGCTAAGCATAGAGCCTGCCACTTGGCGCTATGTGAGGTGAGATATTAGTGAAGTTGGCTAAGCATGTAGATGCAGCAAGGAAAAGATTTGCGGACAGGGGTTCGACTCCCCTCGTCTCCACCA
225965..225976                     attR                                                                                 N/A                 ACGAGGGGAGTC
complement(226464..226919)         PHAGE_Staphy_StauST398_5_NC_023500: SsrA-binding protein; BGV11_00980; phage(gi588498309)     1.58e-50            ClostridioidesdifficileMAGKKILATNKRARHEYFIEETYECGIELKGTEVKSIRQGKVNLSDGFASVDNSEVFLKQVHISPYEQGNIFNVDSLRVRKLLLHKHEIRKLIGATTIKGYSLIPLSLYLKNGKVKVEIALAKGKKLYDKRQDMAKKDAQRRIEREMTGKY
