gi|00000000|ref|MPGF01000002.1|  Clostridioides difficile strain 7462-DH/ST42 7462_contig000002, 567981, gc%: 29.44%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(64833..66746)           PHAGE_Entero_phi92_NC_023693: Phi92_gp067; BGU94_03730; phage(gi726647000)           1.25e-05            ClostridioidesdifficileMRESIDLEKESFFNRLFKKYKFRHLTLLILDICSVLVAFRMSLSLTGNLNAFTTNDIIISVCIYIVLHIVSFRLFKCYNTLWRYAGEEEIISIFVATLAYLIPIYIINKLLGFDYPIMFYVLNTIFIIMFTSGARIAYRAIRIVMNKTYSRGKVSNILIIGAGDAGEMVIQELKRNPELKKVAVAIIDDDKNKIGRIIHNVKIVGTTSDIKDVVEKYNVDEIIFSIANIEKRRKKDIIDICKNTNCKIKTIPGIYEIIDGKVDIKQIREVEIEDLLGREPIKTNLREISNYIEGKVILITGGGGSIGSELCRQIAGFNPKELIIVDNYENNAYSIQQELLRKYKNKLDLKTVIASIREEKRMDEIFNKYKPEVVFHAAAHKHVPLMESSPGEAIKNNIFGTLNIAGLSSKYRAKKFVLISTDKAVNPTNIMGATKRAAEMIIQTMNAESQTEFVAVRFGNVLGSNGSVIPLFKKQIEDGGPVTVTHPDIIRYFMTIPEAVGLVIQAGAMAKGGEIFVLDMGEPVRILDLAKNLIKFSGFEPDVDIKIEFSGLRPGEKLYEELLMSEEGLLDTEHKKIFIGRPIDVDREKITKYLKLLREITNNEEVEKIDGIMRELVPTYIKPEDANIKEIATTREK
complement(66830..67921)           capsular biosynthesis protein; BGU94_03735                                           N/A                 ClostridioidesdifficileMKTVCYLADGSNPHTLKWCSFFKNKGYDIHVISLNGGHMEGIKIYNFGSNVEELKNENISKKTGYLGSIKQIKKLVNEIKPDILHAQYASSYGFIGSLLGYHPYIISVWGTDIYDFPNNGFIQKQIIKHNFRKADYIFSNSRDMAKEANKYTAKHVDVTFFGVDMDRFKPMEVEKEDAFVIGIIKSLEKKYGIEYLIQAFKMLKDEYKDKKIILKIGGSGSQMDNLINLAKELGIENDVQFLGRISPENVSKTFNSFDVTVFPSLREGFGVAAIESEACEVPVIVTNVGGHPESVWENETGLIVEPKQPEEIKNAIIKLMENDELRLNMGKKGRQFVRENYEVNLNFNDIEKIYDSIFDKYKK
complement(67927..69222)           PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; BGU94_03740; phage(gi100146)     5.40e-112           ClostridioidesdifficileMKIAIAGTGYVGLVTGVCLAEVGNENVVCVDVDEQKVKSMKLGIAPIYEEGLEELMVKNYNRGRIDYTTDYKKAYEDVDVILIAVGTPERSDGSANLDYIKAVAKQIAETVTKDTLVVIKSTVPIGTNEEIEDYINRNLKNDVKVELASNPEFLSQGTAVKDTLHASRIVIGVESEWAREILEEIYKPFNQPIIVTNRNSAEMIKYASNNFLALKISFMNDIANLCEIAGANIEDVALGMSYDDRIGSKFLKAGIGYGGSCFPKDTKALHWLSEHNGYELKTVKAAIEVNESQKLKLVRKASKLVESFQDMKVAVLGLTFKPDTDDIREAPSIPNIKYLLERGARVTVYDPIGVNNTKKIFGDSILYADSVDDAIEDAEICFIMTEWKDVLNYDIHKYKEKMKNPLVLDGRNCYKIKDMEELGIEYYSIGR
complement(69248..70000)           PHAGE_Staphy_phiN315_NC_004740: probable ss-1,3-N-acetylglucosaminyltransferase; BGU94_03745; phage(gi30043988)     1.94e-17            ClostridioidesdifficileMNEPLVSIITPVYNSEEFLSETIKSIQNQTYKNWQLLLVDDCSKDNSSEIIKSFRKEDARIKYIKLEKNSGAAVSRNVGIKNAEGRFIAFVDSDDLWDSRKLEIQIEYMLKENVGFSFTSYRYMRQDGSKTNKVARAPKKIDYEGLLRNTIIGCSTVVIDKEIVGEFSMPLVRRGQDTATWLQLLKKEKYAYGIQEDLVNYRLVGNSISSNKIKALKRTWNTYRNVENLSLPKSLYVFCFYVFNAIKKRV
complement(70048..70956)           PHAGE_Salmon_ST160_NC_014900: GtrB; BGU94_03750; phage(gi318065903)                  3.07e-05            ClostridioidesdifficileMYKYKFTVFTPTYNRAHLLENLYNDLKAQTYDFNDFEWLIVDDGSSDSTKELVEKFISENKLNIRYIYKENGGKHTAINLGVKNADGELFFIVDSDDGLIKDSLEIANDEWDSLENKEGFSGVVGLCVYPSGDLIGTEMPEDKKICHFADLYFKYGVKGDKSIVFVTDELIKFPFPERKEVRFLPESVVWNEMSKYYKVICVNKPMIIRDYLDDGLTKNILSKNALRGRALEFLYLINQNTYPLSRYPYMWIKNYINLARYSLLSDSHYFGELRKVSDKLLYLALFPLGYYKYIGQRKLVSK
complement(70978..71727)           PHAGE_Staphy_phiN315_NC_004740: probable ss-1,3-N-acetylglucosaminyltransferase; BGU94_03755; phage(gi30043988)     2.97e-14            ClostridioidesdifficileMKKNLVSIITPMYNSEKFIEATIKSVLNQTYQEWEMLIIDDCSTDNSPNIVKSYMQQDSRIKCIKTETNKGVSNARNLALSKATGQFIAFLDSDDQWNSSKLEKQVNFMLENDYVISFTSYELMDENDKKLNKVIKVPPNVDYRRLLKGNILGCLTVVIDKSKLDFEIRMSGVRHEDYVLWLSILKKGHIAHGINEVLALYRKSSNSLSGNKIKAAMWTWNIYRNIEKIPLYKAIYYFINYGINGIKKS
complement(71756..72931)           glycerophosphotransferase; BGU94_03760                                               N/A                 ClostridioidesdifficileMDKVKFLINMLLAFFIYPFNKHKFNGRDIWLIGGHSGDIYNDNSKFFYEYMLKEHNDVETYWVVNKDSKVFDKIPGKKLIRGSVENYLYYYNSKAIVFSHAPSADIAPYNFAVPVLNYFHKKTIKVFLNHGTISFKKRKPMNKKFKNIIDNLYKSYNIVTASSEFERNVMVNDWGMLDDSVYIIGNARYDNLPTNEVAQTRDILYTPTWRDWIKFSSGKFTDTDYFKNIMNFLNDDKLNKILDEKDINVKIYMHHLMHEFIDDIKENITGKRIVFLDKGVTLANEIRKSAANITDYSSVAIDFLYMNRPILFYQFDLDEYMEKVDSYIDLKSEMFGSLAYNNDEAVNKLIDIIENNFEVMDNQKNERNKFFRYNDNKNCKRIYDCVLSKIK
complement(72946..73785)           PHAGE_Staphy_phiN315_NC_004740: probable ss-1,3-N-acetylglucosaminyltransferase; BGU94_03765; phage(gi30043988)     7.40e-07            ClostridioidesdifficileMLISLIMPTLNRYDDIYLLMDSLENQTYKNFELIVVDQNDNSKVKEIVDKYIDKLDIKYIKSSKKGLSYNRNVGIDNAVGQIIGFPDDDCVYENDTLEKVINFFNKNKDYKIYSCKTMDSNKVDAFKKMYDGTCDITSSNVLDTITSITFFIDFEGKDYTRFDEKLGVGGEFGAGEEIDYVLNLLSLGFKGKYFGNDIIYHPAKKHSKSKEKYQKDYNYGRGFGALCKKEIVYRKNYKFAKVMVSKLVRNIGGLILSSNRDYHSATIKGRINGFRQYKL

#### region 2 ####
409099..409112                     attL                                                                                 N/A                 TATAAAAAAAGAGT
412038..413174                     PHAGE_Geobac_GBSV1_NC_008376: DNA integration/recombination protein; BGU94_05170; phage(gi115334655)     1.04e-27            ClostridioidesdifficileMARKGENIYKRKDGRWEGRYIKSRSSTGKANYGYVYAKSYREVKAKLISQSSCTSNSVTVDPEISSDQFEQVAMEWFQAICPKVKESTSNKYRNLLSSYILPVFGSKQLRDITHEFIETQCNFFLVSGGLKENGLSSKTVSDILSLIRNVLQFATRNGKAISCDARSIQIKRQTKEMRVLSRAEQEKLCQYLYSNLDSCNIGILVCLFTGLRVGEICALRWEDVSFSDYTIHVHQTLQRIQDRTNSEYKTRIVVTTPKSACSIRTIPVPHGLMTILTAHKASSTGYILTNSDQNPLEPRTMQNHFKKVLKNSGITSANYHSLRHTFATRCIELGFDVKSLSEILGHASVNITMNRYVHPSMDLKRENMQRLSDLLAVK
413435..413812                     PHAGE_Liberi_SC1_NC_019549: hypothetical protein; BGU94_05175; phage(gi423262485)     1.45e-05            ClostridioidesdifficileMEVIETQPEIDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLAFVLEKNFDYFLLDTPYAKCDSIIDNEIAAKLKKCNVTTLITVGKLIDVLIDQQEMIKKAELD
complement(413975..414529)         PHAGE_Geobac_GBSV1_NC_008376: hypothetical protein; BGU94_05180; phage(gi115334657)     1.72e-11            ClostridioidesdifficileMKTAEHIIETVDKLVRKYHTRDPYELCQLLGIKIHYYDLQKKLKGFFYYQSRQKNIVIDHNVNGILERILVAHELGHAVLHTKIAMMHGFQEMEVFDDRSIEENEANFFAAELLLEDGKVLECLSEHTFFETAKMLYVPAALLDYKFSLLHEKGELVNSMYIRKADFLKEDLHAYDNDIGYGDI
complement(414581..415030)         PHAGE_Geobac_GBSV1_NC_008376: immunity repressor protein; BGU94_05185; phage(gi115334658)     6.91e-12            ClostridioidesdifficileMTFGEKIKEARLAMNLSQTELAQMTGISERSLYTYEQLGTLPRKSNIRKLAEALHISVSYLLDESETDSQSHIDQDMFILEAKENFGSKGAKEAQEVLGRVNSLFAGGELDEDAKDVFFQAIMSVYMDSKKTAREKYTPKKYRKHKDKE
415317..415880                     hypothetical protein; BGU94_05190                                                    N/A                 ClostridioidesdifficileMSRYNTQVLSSIRMLCRMQNIDEKVLYERAKLILSIYREVCWSTIDRANDVCDTLICTYGDSLDGALIYLENFAPDEARERFEERIRSLFETKWIIELVDMAMLKIREYPDKGALYCEIISKAYLNRFKYRESEMLEVLNMERSTYYDRKKEAILLFGLSLWGTAIPKLKDFLESAREEEALCYCEC
416233..416448                     PHAGE_Lister_A118_NC_003216: putative repressor protein; BGU94_05195; phage(gi16798819)     3.81e-09            ClostridioidesdifficileMYYDLVESGKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIFLGRE
416963..417370                     PHAGE_Clostr_c_st_NC_007581: PemK family transcriptional regulator; BGU94_05200; phage(gi80159713)     3.79e-09            ClostridioidesdifficileMMKENWVYCRGDIYCAKLDPVVGSEQGGIRPVIVIQNDTGNKHAPTLIVATVTTRIHKKANMPTHFVIYDNPAFKEASVVQLEQIRTIDKSRIDNYLGKVTPREMVAIEKALSVSLAMEQLKKRSPKHKAKRAKE
417377..417613                     PHAGE_Bacill_SPP1_NC_004166: hypothetical protein; BGU94_05205; phage(gi22855124)     2.77e-07            ClostridioidesdifficileMFEERIAAMNQRTEEAMAANAVQFDKRTYTVDEIQDILGISRTSAYNLVKKKVFHSVRIGGSIRISKKSFDEWLDHQM
417731..418354                     DNA-binding protein; BGU94_05210                                                     N/A                 ClostridioidesdifficileMAEMRKRTSMSVLEMGRMLGLGKTESYWLIKKNYFKTILVGNTMRVMIDSFEEWYANQFKYQKVDGTPPGEELKKTTYSMEELGQRLGLKEATAYELVAKGHFDVVDVLGKRRVTKESFERWYASQTDYRTVEDQELDADIMASTYGLPEMARMLGVHRQTIYYIVANEDFELIKVGRYKRATKESFEKWYHNQTRYQLAEDRQERS
418359..419732                     PHAGE_Clostr_phiCD211_NC_029048: Phage integrase family prophage LambdaCh01; BGU94_05215; phage(gi981220898)     7.64e-39            ClostridioidesdifficileMASIVKRKKKYSVVYTYTDENGNKRQKWETFETNAEAKKRKLQVEYEQESGTFIPPSAKTVNDLLDEYMSIYGVNTWAMSTYESRKSLIANYIRPLIGDMKLEDVTPRIMDKYYRDLLSVKAVSSKYVKARTEYLTPHTVREVHKTLRNAFNQAVKWELMTRNPVEHATLPKEEHKTRDIWTAEVLQKALEACDDDILRLAINLAFSCSLRMGELLGLTWDCIDISPTSIELGQASIFVEKELQRVNREAMADLDGKDIMFKFPPTFASTHTALVLKTPKTKTSVRKVFLPKTVAEMLVQRKADIEELKDLFGDEFVDFNLVFCSSNGKPIEGQVINRAFNKLIEEKGLPKVVFHSLRHSSITYKLKLNGGDMKSVQGDSGHAQVKMVADVYSHIIDDDRRLNAERMEAAFYSGRQATPEPVQPAATESSADDKELLLKLLQNPEMAALLKSLAKTL
421080..421093                     attR                                                                                 N/A                 TATAAAAAAAGAGT

#### region 3 ####
532508..532519                     attL                                                                                 N/A                 ACGAGGGGAGTC
complement(546373..547608)         PHAGE_Marino_P12026_NC_018269: replicative DNA helicase; BGU94_05695; phage(gi399528354)     4.01e-37            ClostridioidesdifficileMLNEDMFYHEEHKYIFNAIKEINKRNEVIDIITLTEELKRKGHLNNIGGISYITSLSTIVPTVSNFMSYVSIVIEKYKNRNIIDKFKKFNLGEIDDNTLIYQLENDINKANQKLIKKDSSITAISERAFEYINDEVNEGIKTGIKFLDDTIGGLYGGELTTIAAKSGRGKTALALQILRNVIFQGKKVLFISGEMSDIQILFRNIASLTGISVVKMKNRNLNDEEIVKYIQALSIINQENNLYINDSVNTISGIKREIKSIKPSLVIIDYLQILDYEGKEVGEAKFADLSRQIKKITLDFNIPVIQLAQLNDELKDERPKGDRVMRSSKQIYMDSNSVIYIHRPTEKEALNYCKTMGIEDIRELRRREKGFGANLSEIIVAKNRDGESGFRPYWYIGNLFSFEECKKIQEI
complement(547720..548463)         PHAGE_Bacill_Palmer_NC_028926: DnaD/DnaB replication protein; BGU94_05700; phage(gi971756452)     9.79e-31            ClostridioidesdifficileMSNKGWIKLYRELLDKSIWKDIKPERKVILITLLLMASHKENHVFIDNKRIKIKSGQFISSYSKIAERCGKGVSYQMVRSCLLVFKNAGFLTYETTNKYIVITIENWELYQENIENQQPNQQTINNQSTTIKNIKNENNIIYSEIISKFNSTCIELSKVKKLTDTRKRRINSRIKEYDKETVLEVINIVSKTSFLNGNNNTGWKANFDWIMNSSNFTKILEGNYNSKEIVINKETGIYNPDDSQLKW
complement(548485..548799)         hypothetical protein; BGU94_05705                                                    N/A                 ClostridioidesdifficileMKENNNLEVLKTLQATLNIIVKNEEEAQEKKQGYKIIENAKRNKAELITCKEASKLYPIGESKFRQLCHSKNKGFPCIWINNRVYIIKNKLDDWFIENANGIKL
complement(548803..549003)         PHAGE_Brevib_Abouo_NC_029029: XRE family transcriptional regulator; BGU94_05710; phage(gi971767218)     5.27e-12            ClostridioidesdifficileMGINLKIFRIKKGLKQQELADRVGISRYYLSNLETGKANNPSNDLMIKLSRALDTTVEELFFSKED
549150..549914                     PHAGE_Bacill_phi105_NC_004167: immunity repressor; BGU94_05715; phage(gi22855027)     9.47e-09            ClostridioidesdifficileMQIGKNLKNIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEKTIFYFDIENEVMTNEDVLYLLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLLLGAWSDKDQYYKLGEKLELNENQVYNWILSDCISNTELDFSLHPDDIKEIIKNDVLTKQSIDELLDIGLSEENIETIYDYFSDSTDNGSNIRLKKLISQKENITIKNNDYFKLLQENNELKEKNEKLENTLKEIKKLLTKI
549971..550169                     hypothetical protein; BGU94_05720                                                    N/A                 ClostridioidesdifficileMNKSYMLKYTYKCPTNLFHGDKKYTLTYTKRVMSNLVYDMGSRKLLYMFRSTIIVYIGEIMA
550166..550657                     PHAGE_Bacill_Palmer_NC_028926: transcriptional regulator; BGU94_05725; phage(gi971756443)     4.13e-08            ClostridioidesdifficileMMNNTIGEKIKQYRKSINMSRDELANKIGCSVHAIAKYEQNQRMPSLDMIRKIATALSIAINKLIVEENDLDTLTNNNINLKVFDKELDLVIHILENYGYDIKTDYKKKFEITDNADTIKPINLNFSDFKDFSKNLNWVINGLVENFIQENSNGLIEDEDEEY
550749..551501                     hypothetical protein; BGU94_05730                                                    N/A                 ClostridioidesdifficileMNKSYIPKYTHKFPTNLPHGDKKYTLTYIRRMISEFVYDMGNLENNPFTFPEVQTLLDGITVGGHKLSDQNQILNIKSSWDYVIKLSNKENLSLNKDTICSIHKIVAKDEALIVGDFRNGNIGIAGTTQYECIEATLLNDLFVNDINIINKITNPLEKAIIINLWLSYCQFFYDGNKRTARLTSNLILISNDIGVLSIPAKHKQEYNTLMLNFYETLEADEVIKFLLEKCITFFDGYNYKSYKELFKNGN
551491..552657                     PHAGE_Bacill_phi4B1_NC_028886: site-specific recombinase; BGU94_05735; phage(gi971821285)     2.52e-39            ClostridioidesdifficileMATKRANGEGSIGKYKDGWRSRIMIGYNEDGKPIRKEFYGKTQKEVKDKLDAYKKQYYLSSDISDDKITLEHWFYNWLFEYRIKDLKPKSFERYESIYRNYIKDTDLGNVKLKDLRVSHIQKYYNRLLDSNKSIPTIRQINTKLKTCLSEAEKQGLIQRNYCTMVNIPVEKKENKLEILTLEQQKSFIKAIDGHKLEVLFLLALGTGLRLGELLGLKWFDIDFKKSNLTVKRTLQRTYFIDKTGNRELKVLEQEPKTSNSYRTVPIPKDVLNKLKEHKVNQNSDILKAGELYRNDNYVFCNELGIPIDDKRPLRNLKSILNSLDIEPIKFHGLRKTYATRLFENDVPPKTVQVLMGHYDISITLNIYTQVMEDKKVEAVEKLDKIFSL
complement(552773..553003)         hypothetical protein; BGU94_05740                                                    N/A                 ClostridioidesdifficileMEANKTLLQILYKKIILEFSKQTGKSLEESMDYLYTSETYKLISEGVADMHCKGHIYLAQELMLENGLMYHKGYPR
complement(553009..553488)         PHAGE_Geobac_E3_NC_029073: hypothetical protein; BGU94_05745; phage(gi985758366)     4.85e-06            ClostridioidesdifficileMIVYHGSYCVVKTPSITFSRDSLDFGKGFYVTSIKTQAINWTERFKKRGKKAYLNSYSLDIDKLKENCKVKIFNSYNLEWLDFIIECRNMSDIYMKYDIIIGGIADDKIYNTIELYQDNLIEKDEALKRLKYYKPNEQICITNQNVIDKYLKFRYEEEV
complement(553488..553703)         transcriptional regulator; BGU94_05750                                               N/A                 ClostridioidesdifficileMDERKLEFSIFCIEALAEKLNIDSEGVYKLLKHDTDILDNYIIPCYEALHSQSKGYIVEDLMQVLKEKGVI
complement(554019..554368)         tRNA                                                                                 N/A                 GGGGGCGTAAAGGTTTCGACGTGGGTTTGGAACTTGAGGCTGCATGTCGTGTTACTCTGGGTCACGTAAAAACTGGGGAACTTTAAAATAAACGCAGACGATAATTTCGCGATAGCAGCCTAGTTGCTGCTCGTCCCTCTTAGTCCTCCTGCCGACTAAGACTGGACGTCATTATGCAGGGAACTACTTTAGGGGTGTCTCGACTTGAAGTAGATTAATTGGGACTGGCTAAGCATAGAGCCTGCCACTTGGCGCTATGTGAGGTGAGATATTAGTGAAGTTGGCTAAGCATGTAGATGCAGCAAGGAAAAGATTTGCGGACAGGGGTTCGACTCCCCTCGTCTCCACCA
554027..554038                     attR                                                                                 N/A                 ACGAGGGGAGTC
complement(554526..554981)         PHAGE_Staphy_StauST398_5_NC_023500: SsrA-binding protein; BGU94_05760; phage(gi588498309)     1.58e-50            ClostridioidesdifficileMAGKKILATNKRARHEYFIEETYECGIELKGTEVKSIRQGKVNLSDGFASVDNSEVFLKQVHISPYEQGNIFNVDSLRVRKLLLHKHEIRKLIGATTIKGYSLIPLSLYLKNGKVKVEIALAKGKKLYDKRQDMAKKDAQRRIEREMTGKY
