gi|159162017|ref|NC_006814.3|  Lactobacillus acidophilus NCFM chromosome, complete genome. 1993560, gc%: 34.71%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
733013..733026                     attL                                                                                 N/A                 AAGAAGATAAGCAA
complement(745463..746965)         PHAGE_Lactoc_bIL310_NC_002669: helicase; LBA0757; phage(gi13095886)                  2.58e-57            LactobacillusacidophilusNCFMMYMENITPKLDQKLVDEFNNSPISLTYLKSILRNDGHERRQLLKDKSDKKDKNIILPMRTVTNILEYHIIWAVLGNDKEDWQKSALYFYNTESGIYEKDSLLIEELINTVEPQITERNIKEVKSKLRIESKRLFLTNDPNLYALGNGIFDAKKHKLLAYSPKCVFTSKIAVNYNPNAQEPRFDNWSFSKWINEDIAENKTDKIKLIWQTIKAVVNSNYSYHSAVFLIDSKKGSAGKGTFEALLENIAGPNNYATIKLNQFEKAPILATIVNKPLVIGDDNDPNRAVDSSENFKSASTGDPIVINDKFEKAYSYKPTCLIVQSLNALPVFKDNTDATYRRIRVIKFNKKYIENAKNRRVKDEYISNKELLEWIVKKAIDVKIDGVMIRTQESNEILKENQIDSDSFLQFTNDIIVPTTNGYRFKDDTYQAYKKWFEITGHQFGLETYRGFNKRMREDIGLKQSRKMRNGRKMDVWLNIQLKTDSGNLNDMDLKDLNGRENN
complement(747077..747301)         PHAGE_Strept_mu1/6_NC_007967: hypothetical protein; LBA0758; phage(gi93007417)       2.93e-06            LactobacillusacidophilusNCFMMQSSKPYLNRKEIAKYFGVADSTITYWASLGMPVANIDGRKLYGKASITAWLASHEMPSQKQNKKPVTMGVVKD
complement(747374..747598)         hypothetical protein; LBA0759                                                        N/A                 LactobacillusacidophilusNCFMMNNEIKLHQALYEMKAVAEQLYPLYKALTDEIEQLTEDDPNDPITTKKTLKYLSEDVFDLGTRLIDNAKSIEKE
complement(747602..747985)         hypothetical protein; LBA0760                                                        N/A                 LactobacillusacidophilusNCFMMNSKLVIDMQRDLRAHGINLSLEQTYQHLLKANFIDAEGEPTEWAIKNGYVGVEYSYPQGMPTQDESDILTVLGYLPQSAIHHNDCPNLSGIDKEPLKKAIKQALHDDAISINGRKKWKNVLLDLEA
complement(747989..748207)         hypothetical protein; LBA0761                                                        N/A                 LactobacillusacidophilusNCFMMTNYSSDGSNVVDRWYKDGYLYCAFVDGTIMEYGRNKIPERYIEVMRNELAQTVYDLQGGKYDFDDFEPEEA
complement(748200..748406)         hypothetical protein; LBA0762                                                        N/A                 LactobacillusacidophilusNCFMMSKEYLTLKEAMSYMGFTTYDSLRKVIKLGLPVIKFGNSKRISKTAIDDFMQSHTAVVHPTKELVNND
748541..749092                     PHAGE_Lactoc_bIL309_NC_002668: Orf32; LBA0763; phage(gi13095837)                     2.30e-10            LactobacillusacidophilusNCFMMNRIREIRENKKLSLKKTTELLKSNDLLTLTPDALAKYERGDRQPNEPTWQALANFFNVSVDYLKGHGYSKEHIYKCLDNAYKEPYTKDYEIEPPFTNPVLSAKEEIEKYCEQNKISIPKDTDLDFWKTNFNFIFNDKSVNRLLTTKDKYSDSDIKELIINAIFFASLSPETKRALNLMKHNS
749258..750328                     PHAGE_Strept_T12_NC_028700: site-specific recombinase; LBA0764; phage(gi966201482)     8.57e-60            LactobacillusacidophilusNCFMMNNDIKEYTTPSGKKRYGFNLYVGVDETTGHSIQIRKQGYKSKKEAQEAYLNYQLKIIKGEYIPESKGHITFNKLYEMWLKLYRETVKTSTYATTTRYFEDHILKQLGSKYIDKLTVLDCQKAVNIWFNDAPKTYKRFMRYTNNVLNYGINNLELISKNPMNKVIPPKAKNEPKPFTDFYSKDELNTFLRNAKEYNFKYFVFFRLLAYSGMRKGEALALKWSDINFKDNTISINKDVTVGLNNELYEDTPKTENSFRTLDMDATTMEYLKEWRLMQQKTMLELGYNFLNIDNLLFPTINNGYLSMSKPRQWNVAICKKYDLRRIKIHGFRHTHASLLFEAGASMNEVKARLGLTRP
complement(750576..751928)         UDP-N-acetylmuramyl tripeptide synthetase; LBA0765                                   N/A                 LactobacillusacidophilusNCFMMSFKSGIAKVAGKSSYWFLHNVLKGGTSFPGKFAMKIDPNVLNSLAKGYETVIVTGTNGKTMTTALIVEALKKKYGDVLTNPSGSNMQQGIVTAFLAHKNKHVKRKIAVLEVDEANVKMVTKLLHPSVFVLTNIFRDQMDRYGEIYTTYEKIVDGIKLAPDATIIANGDASIFSSVDLPNKKIFYGFKLPDDKKENDFKAPVNTDGVLCPKCDHILHYHERIYANLGDFFCPNCGYHRPDLTFTVNKILEQTPNSVKFQMGNKDYSINIGGTYNIYNALAAYSVARHFGLTEAEVAQAFAENKRIFGRQELIHYGGKDIDLILVKNPVGLDEVLHMLNTEKDDYSLVALLNANHADGIDTSWIWDADFEGLDRSKIKKVLVGGQRWHDMGFRLEIAGFDPGKMSTNPDDDSLIEEIKKLPTKKVYILSTYTAMLALRKKMAEKKIIKAGM
752052..752675                     PHAGE_Lactob_Lb338_1_NC_012530: thymidine kinase; LBA0766; phage(gi226377693)        9.28e-62            LactobacillusacidophilusNCFMMIKREGPKVAQLFFRYGAMSSGKTIEILKVAHNYEAQGRKIALMTSGLDNRSGVGTVASRIGIHRKAIPITEEMDLFEYIKEMNNHDLADGDGKLACVLIDEAQFLKRHHVLECAKIVDEFNIPVMTFGLKNDFQNHLFEGSENLLIFADKIEEMKTICHYCGHKATMNLRINNGKPVYEGEQVQIGGDESYYPVCRYHYFHPNVVR
752691..753776                     PHAGE_Mycoba_Tonenili_NC_031080: baseplate wedge subunit; LBA0767; phage(gi100201)     1.07e-05            LactobacillusacidophilusNCFMMDKVMAQLESLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKENKKEIEDNKEIISNETDSDLIEMAKEENAELEKEIPELEDQIKILMLPKDPNDDKDIIMEIRGAAGGDEASLFAGDLLRMYEKYAERQNWNVSMIDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHRVQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAVRMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAQYDAKRKNAVGTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRVMNGELDEIIDALILYNQTKQLEELADNA
763975..763988                     attR                                                                                 N/A                 AAGAAGATAAGCAA

#### region 2 ####
863952..863969                     attL                                                                                 N/A                 TAAAAACAAAATAAAAAG
complement(870710..871660)         PHAGE_Lactob_Sha1_NC_019489: phage integrase; LBA0893; phage(gi418489824)            1.12e-84            LactobacillusacidophilusNCFMMEVAKDQQQISDANPVFADYFKSWYGTYKIPGKSRTTVVRYETIYKKLNAYYGKAKLAKVTRKSYQIFMNEYGKKHAKDTVYKTNGSIRSCVRDGVADGIIQKDFTQKINLTWNSERTRKIDYLNYEEIQSLKNSLLHNIKHTYISRYMILTALYTGMRPGEIAVLTWSDIDFKNQTININKSYNHDKGRVDNYDSSEIDKSTKNTNSVRIIKVDKKFLDILSQLKQNDHEKIFIGKDGTIPTSNAVNKVWRKQLEKLNIDKPSFHFHSVRHTHVALLPFKGVPLYAISKRLGHANMSTTAKKYAYMLDELKQQVR
complement(871880..872080)         hypothetical protein; LBA0894                                                        N/A                 LactobacillusacidophilusNCFMMGPMRTLTVAIDWILIILFVISIILLIYALVKKNKKMAKYAGIAAAIIFILLFIAMRFALTVKPGQ
complement(872083..872736)         PHAGE_Bacill_vB_BhaS_171_NC_030904: RNA polymerase sigma factor; LBA0895; phage(gi100049)     7.77e-08            LactobacillusacidophilusNCFMMFTYLLITIFGIGLLIWAFWYDKNMFKPEKKKNGKMTKPLHTRWYFWVLVVFSIVGGIGNMLGLGADDDDSDNNSAQTVQTSKKAKQSKAENHSKAKKSGTKKSKEISDEEKEAAALLLLRKNFKGKAKVWYDSDNKAFMIQPTGTEFKEELLDIIATQDTSDWKDLTDSMDSLSRSLYKNLQLADFVSIVNPDNPDKVLYSSLNGHSEYDFLKDDE
complement(873265..873603)         PHAGE_Lactob_Lj965_NC_005355: putative repressor; LBA0896; phage(gi41179224)         3.34e-34            LactobacillusacidophilusNCFMMTNQTNLAQKITNYREAQDMTQAELADKSGIERTALNKIEKGTRKVSSDELKAIALALNISADTLLDLNGSELTWADLGMPYGGEIPDELKDTYADIARGYFKRHPEYLNKN
873767..873970                     PHAGE_Lactob_Lj965_NC_005355: putative cro repressor; LBA0897; phage(gi41179225)     5.98e-23            LactobacillusacidophilusNCFMMKKEINLALIRERRLKRGFSNEDMAKSLGLASSDKYFRREHGIYKFQASELPALSKKLGIPLEKFFI
874230..875621                     transporter protein; LBA0899                                                         N/A                 LactobacillusacidophilusNCFMMGKKNKVPQLSRSMTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVLLAYMFVGLILYIVMRALGEMLYINPGTGSFADYATEYVHPLAGYLAEWANVFEYIVVGMSEVVAATEYLKYWWPNISALWSGVIIIAFLLLANLASAKAYASLEFWFAMIKVITIILMIILGFIVIFFGVGNGGKPIGFSNLWAHGGFFTGGVKGFFFSMSIIVGSYEGIELLGISAGEVANPQKAIVKSVKSVLLRILIFYVGAIFVIVTIYPWNKLSSLGSPFVTTFAKVGITAAASIINFVVLTAALSGANSGIYSSSRMLFKLSHDNEAPSVFKHISKRIVPDRAIMGISGGIFIGFILNIIASQFNHSASDLFVIVFSSSVLPGMIPWFVILLAELRFRRHNQDMMKDHPFKLPLYPFSNYFAFLMLLVIVIFMFINPDTRISVITGALVLIVATIVYLVRHKDEFSKNN
875749..876705                     PHAGE_Staphy_SPbeta_like_NC_029119: thymidylate synthase; LBA0901; phage(gi985761245)     4.85e-144           LactobacillusacidophilusNCFMMAILEQPYLDLINKIMIEGHDKNDRTGTGTRSYFGAQMRFDLSKGFPILTTKKVPFGLIKSELLWFLRGDTNIRFLLEHKNHIWDEWAFKNWVNSDEYTGPDMTDFGLRSQSDPEFNKIYQAELKKFDRRILDDENFAKKYGNLGDVYGAQWRHWQKRDGSFIDQIENVIEQIKNNPDSRRMIVTAWNPEDVPTSALPPCHVMFQFYVVDGKISVQLYQRSGDMFLGVPFNIASYALLLNMIARETGLQVGEFIHTLGDAHIYSNHFSQVKEMLSRKPYESPQLWLNPEKKHIEDFDMQDIKLVDYKHHGTIKAPVAV
876715..877218                     PHAGE_Bacill_G_NC_023719: gp125; LBA0902; phage(gi593777584)                         1.61e-28            LactobacillusacidophilusNCFMMIEYVWAEDKEKNIGLNGHLPWYLPADMKHFKEVTINHPIIMGRKTFESFPNLLPKRKHIVLTHNEELKNKYQNNDQVTILPTVEDLHNFVAEHQDERMCAIGGVSIFNALMDQVEVLEKTEIDAIFEADTKMPEIDYSRFNLVAKKHYEPDEKNKYPYTFLTYKLK
890013..890030                     attR                                                                                 N/A                 TAAAAACAAAATAAAAAG
