gi|170650760|ref|NC_010488.1|  Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence. 130440, gc%: 50.81%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
65120..65131                       attL                                                                                 N/A                 ACTAAATGAAGG
68871..68882                       attL                                                                                 N/A                 GTATTCAGTAAT
complement(70340..71080)           PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; EcSMS35_A0096; phage(gi971744895)     4.09e-06            EscherichiacoliSMS35MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLNGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALVGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRTLPPLR
complement(71763..72671)           Mig-14 family protein; EcSMS35_A0097                                                 N/A                 EscherichiacoliSMS35MTLSIKNIKRIITAWKPSTFETYKKTFEKYGGSVNMHPDVVSYFMIHHDWKFDFFHYEKDGDIKGSYFLCNGKQIGIMARRSYPLSSDEVLIPFSPHARCFFPDKTNKLSIINKQNIINATWKIARKKQNCIIKESFSPKFEKTRRNEIQRFIRNGGEIKCISQLSDKEISSSYISLFHSRFGGTLPCYEYDNLLMFISHLRELMFGHVLFWDNKPCAIDIVLKSESSCNVYYDVPNGAVLNDENCMKLSPGSVLMWLNIDKARRYCQDNNKKMIYSIGAFRPEWKYKLLWSVPCKVGKCLC
complement(72734..73843)           hemolysin F; EcSMS35_A0098                                                           N/A                 EscherichiacoliSMS35MKLLLLTGATGFLGGAVLDKLLDNCNNINLLLLVRAPTPQAGLERIKENMRKFNVCEERLHALTNDNILPGDLNNPEAFLMDPRLDEVTHVINCAAIASFGNNPFIWNVNVTGTLAFARRMAKVAGLKRFLHVGTAMSCTPHTGSLVKEESASSETGEHLVEYTHSKATIEYLMRKQCPDLPLLVARPSIIVGHSRLGCLPSTSIFWVFRMGLMLQKFMCSLDDKIDVIPVDYCADALLMLLESSLINGEIVHISAGKESSVTFSAIDEAVARALNCDPVGDRYTKVSYDILAMSRHDFKNIFGPCNERLMLKAIRLYGAFSMLNVCFSNDKLLSIGMPKPPKFTDYIKYCIETTKHLSIQQQMEVDFK
complement(74276..75229)           outer membrane protease; EcSMS35_A0099                                               N/A                 EscherichiacoliSMS35MYLKILATALSAPVAFAALASDTGLSFTPEKISTEIDFGTLSGKAKERVYLPEEKGRKASQLDWKYSNAPIVKGAFNWDLLPRVSVGASGWTTLAGRGGNMVDRDWLDTSNPGTWTDESKHPNTRLNFANEFDLNIKGWLLNQPDYQLGLMAGYQENRYSFTAKGGSYIYSSEGGFRDETGSFPDGERAIGYKQHFKMPYIGLTGNYRYDSFEFGGSFKYSGWVKASDNDEHYNPEKRITYRSDVNNQNYYSVSLHAGYYITPAAKVYVEGTWNRITNKKGDTSLYSRNLNISDHTKNGAGIESYNFMTTAGLKYYF
75333..75722                       hypothetical protein; EcSMS35_A0100                                                  N/A                 EscherichiacoliSMS35MWPHVALFIPFYVRISGESVKPGMITAPVIHVPENIRAYRALVTANKALVGHFMPGTSVTWKPVPSSWGYFVNSYLKGDKMAKSCDYEAIRVFISVNVGKYTNNAITVNYSDSVCATRHYHSTKINSGG
75783..75794                       attL                                                                                 N/A                 TTCTGATTAATA
76844..77170                       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; EcSMS35_A0101; phage(gi157166066)     1.74e-74            EscherichiacoliSMS35MTKNTRFSPEVRQRAIRMVLESQGEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
77170..78057                       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; EcSMS35_A0102; phage(gi157166067)     0.0                 EscherichiacoliSMS35MPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVVAGDRVNRQFVAERPDQLWVADSTYVSTWQGVVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
78501..78713                       IS1 transposase orfA; EcSMS35_A0103                                                  N/A                 EscherichiacoliSMS35MYDGVFEVLQWLLFLSAVPPVQLLTEWCVTAKAPPDISAISALIAVKHGNCSSLTPLLNPVRTRKSLIWP
78724..79227                       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; EcSMS35_A0104; phage(gi557307573)     1.33e-118           EscherichiacoliSMS35MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(80119..80400)           hypothetical protein; EcSMS35_A0105                                                  N/A                 EscherichiacoliSMS35MNYDEITKITAERISDYMTEAVNTDSIAVAEMFHNAAWGVRTLWFELVTKIDIDIHKKNRYASYDLRRKIEMQHEEFQKMTEREQVPLLKSPE
80919..81329                       PROPHAGE_Escher_CFT073: transposase insC; EcSMS35_A0108; phage(gi26249447)           1.16e-68            EscherichiacoliSMS35MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
81287..82192                       PROPHAGE_Escher_CFT073: insertion element IS2 transposase InsD; EcSMS35_A0110; phage(gi26249446)     0.0                 EscherichiacoliSMS35MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWKDGRRSRHSDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKTAVPPSKRAHTGKVAVKESNQRWCSDGFEFRCDNGEKLRVTFALDCCDREALHWAVTTGGFDSETVQDVMLGAVERRFGNELPASPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQQASNGLSDNRCLEI
82865..83680                       colicin-M; EcSMS35_A0111                                                             N/A                 EscherichiacoliSMS35METLTVHAPSPSTNLPSYGNGAFSLSAPHVPGAGPLLVQVVYSFFQSPNMCLQALTQLEDYIKKHGASNPLTLQIISTNIGYFCNADRNLVLHPRISVYDAYHFSKPAPSQYDYRSMNMKQMSGNVTTPIVALAHYLWGNGAERSVNIANIGLKISPMKINQIKDIIKSGVVGTFPVSTKFTHATGDYNVITGAYLGNITLKTEGTLTISANGSWTYNGVVRSYDDKYDFNASTHRGVIGESLTRLGAMFSGKEYQILLPGEIHIKESGKR
complement(83730..84155)           colicin-M immunity protein Cmi; EcSMS35_A0112                                        N/A                 EscherichiacoliSMS35MLTLYGYIRNVFLYRMNDRSCGDFMKVISMKFIFILTIIALAAVFFWSEDKGPACYQVSDEQARTFVKNDYLQRMKRWDNDVQLLGTEIPKITWEKIERSLTDVEDEKTLLVPFKAEGPEGKRMYYGMYHCEEGYVEYAND
complement(84261..85037)           PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; EcSMS35_A0113; phage(gi764159894)     7.04e-07            EscherichiacoliSMS35MLSLPGSFLTPPATLPVAIDYPAALALRQMALVQDELPKYLLAPEISALLHYVPDLHRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKATRTAGRVPAGSQVHRLVPLSDTQYVSQLQMMVATLKIPLERRNKRTGRMEKARIWGITDRTVRTWLNEAVEAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFSIPESDAVTMLKNRHA
complement(85049..85348)           hypothetical protein; EcSMS35_A0114                                                  N/A                 EscherichiacoliSMS35MISLSPPTICNSAEDTPYGGAGEYSLHKNAAMLGVKALRLSRELRMLCGLPLHGLSDTLSPTRLVLLKARGKTLQKEYEMVKKSKKTEQEIEDFIKGTS
85355..86077                       PROPHAGE_Brucel_1330: transposase, putative; EcSMS35_A0115; phage(gi23502708)        2.94e-53            EscherichiacoliSMS35MLMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
86119..86130                       attL                                                                                 N/A                 GCAACAGTGCCT
86840..87562                       PROPHAGE_Brucel_1330: transposase, putative; EcSMS35_A0116; phage(gi23502708)        2.94e-53            EscherichiacoliSMS35MLMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
87604..87615                       attR                                                                                 N/A                 GCAACAGTGCCT
complement(87706..88347)           PHAGE_Stx2_vB_EcoP_24B_NC_027984: Cat; EcSMS35_A0117; phage(gi937456276)             4.92e-69            EscherichiacoliSMS35MNFTRIDLNTWNRREHFALYRQQIKCGFSLTTKLDITALRTALAKTGYKFYPLMIYLISRAVNQFPEFRMAMKDNELIYWEQSDPVFTVFHKETETFSALSCRYFPDLSEFMAGYNAVTAEYQHDTRLFPQGNLPENHLNISSLPWVSFDGFNLNITGNDDYFSPVFTMAKFQQEGDRVLLPVSVQVHHAVCDGFHAARFINTLQLMCDNILK
88357..88368                       attR                                                                                 N/A                 TTCTGATTAATA
88443..88454                       attR                                                                                 N/A                 GTATTCAGTAAT
complement(88497..88997)           hypothetical protein; EcSMS35_A0118                                                  N/A                 EscherichiacoliSMS35MRLQQWATENIKKLLYLAGDDAVINYGKMRLEFLQKALAQDTSGDFCFRVLHPEVSGPPDMKKASAGYRDFIIGNRALLDLVNSAGEGAPVAHYSADEIQSLFSAQIQGSVDKYGDSFLTDDPYVLAEDKLQTCQMEIDLMADVLRAPPRESAELIRYVFADEWPE
89059..89781                       PROPHAGE_Brucel_1330: transposase, putative; EcSMS35_A0119; phage(gi23502708)        2.94e-53            EscherichiacoliSMS35MLMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
89823..89834                       attL                                                                                 N/A                 GCAACAGTGCCT
complement(90229..91242)           PHAGE_Mycoba_Butters_NC_021061: integrase; EcSMS35_A0120; phage(gi479336499)         2.39e-12            EscherichiacoliSMS35MKTATAPLPPLRSVKVLDQLRERIRYLHYSLRTEQAYVHWVRAFIRFHGVRHPATLGSSEVEAFLSWLANERKVSVSTHRQALAALLFFYGKVLCTDLPWLQEIGRPRPSRRLPVVLTPDEVVRILGFLEGEHRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGKGSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFWVFAQHTHSTDPRSGVVRRHHMYDQTFQRAFKRAVEQAGITKPATPHTLRHSFATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAGVRSPLDALPPLTSER
91389..91871                       PHAGE_Bacill_Blue_NC_031056: hypothetical protein; EcSMS35_A0121; phage(gi100007)     1.34e-22            EscherichiacoliSMS35MRTLKVSLMAAKAKNGVIGCGPDIPWSAKGEQLLFKALTYNQWLLVGRKTFESMGALPNRKYAVVTRSGWTSNDDNVVVFQSIEEAMDRLAEFTGHVIVSGGGEIYRETLPMASTLHLSTIDIEPEGDVFFPSIPNTFEVVFEQHFTSNINYCYQIWKKG
91878..91891                       attL                                                                                 N/A                 GGCACTGTTGCAAA
91923..92645                       PROPHAGE_Brucel_1330: transposase, putative; EcSMS35_A0122; phage(gi23502708)        2.94e-53            EscherichiacoliSMS35MLMELHMNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDHSTIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTVDFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDVEHRQIKYRNNVIECDHGKLKRIIGATLGFKSMKTAYATIKGIEVMRALRKGQASAFYYGDPLGEMRLVSRVFEM
93016..95982                       PROPHAGE_Xantho_33913: Tn5041 transposase; EcSMS35_A0124; phage(gi21231545)          8.29e-46            EscherichiacoliSMS35MPRRSILSAAERESLLALPDTKDELIRHYTFSETDLSIIRQRRGPANRLGFAVQLCYLRFPGVILGVDEPPFPPLLKLVADQLKVSVESWDEYGQREQTRREHLVELQTVFGFQPFTMGHYRQAVQLLTEMALQTDKGIVLASTLIEHLRQQSVILPALNAVERASAEAITRANRRIYDALAEPLSDAHRRRLDDLLKRRDNGKTTWLAWLRQSPVKPNSRHMLEHIERLKAWQALDLPSGIERSVHQNRLLKIAREGGQMTPADLAKFEAQRRYATLVALAIEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAINAKVRLFGRIGQALIEAKQAGRDPFAAIEAVMSWDAFAESVTEAQKLAQPEDFDFLHRIGESYATLRRYAPEFLAVLKLRAAPAAKDVLDAIEVLRGMNSDNARKVPADAPTEFIKPRWQKLVMTDTGIDRRYYELCALSEMKNALRSGDIWVQGSRQFKDFEDYLVPPAKFASLKQASELPLAVATDCNRYLNDRLTLLETQLATVNRMATANELPDAIITESGLKITPLDAAVPDTAQALIDQTAMILPHVKITELLLEVDEWTGFTRHFAHLKSGDPAKDKNLLLTTILADAINLGLTKMAESCPGTTYAKLAWLQAWHIRDETYGAALADLVNAQFRHPFAEHWGDGTTSSSDGQNFRTGSKAESTGHINPKYGSSPGRTFYTHISDQYAPFHTKVVNVGVRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGDAAYDALKPMIGGTLNIKHVRAHWDEILRLATSIKQGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAVVLWNTVYLERAAHALRGNGHAVDDALLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
105681..105694                     attR                                                                                 N/A                 GGCACTGTTGCAAA
106490..106501                     attR                                                                                 N/A                 GCAACAGTGCCT
107251..107262                     attR                                                                                 N/A                 ACTAAATGAAGG
