gi|184154476|ref|NC_010610.1|  Lactobacillus fermentum IFO 3956, complete genome. 2098685, gc%: 51.47%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
539326..539340                     attL                                                                                 N/A                 ATTACTTGTTGTAGA
complement(539413..540534)         PHAGE_Lactob_Sha1_NC_019489: phage integrase; LAF_0460; phage(gi418489824)           1.45e-99            LactobacillusfermentumIFO3956MAQIIKKGPSYMVRVTWRDEDGKQHKKSKSGFKTKAAARKAGAEMESSKYHGVLSTADPIFTDYYQNWYETYKHHQSSRATQDFYRYCINVVNDYFGRRKISTIDRATYQRFLNDFGKSHSKNTASKMNAYVRVAVKNAVLDNVIPADFTEGTTIVWDKTRTRQVEYLNMEEINRLVALVKESLSPGFPVRYMILTAVYTGMRLSEIAALTWDDLDLPFKTIEISKSWDFKGRTFKDTKTKSSRRIIRVNQELLDCLVELKANGHDLVFARKDGSVCGSSSANRTLRLFLDKLNLDKPGFHFHSLRHSHVAYLLANGVPLYAISKRLGHSNMTTTANRYAYLIDEFKARSDDQIERALVSLGVPDGVPTSSFL
542998..543198                     PHAGE_Lactob_phiPYB5_NC_027982: hypothetical protein; LAF_0461; phage(gi937456193)     3.19e-29            LactobacillusfermentumIFO3956MNTDYYANGFKHAEDLLVKALADLDSIIRNEPETRGALRAEVRAILEQLDVAKDLIKQEAQERLGD
543201..543686                     PHAGE_Lactob_LfeSau_NC_029068: hypothetical protein; LAF_0462; phage(gi985757759)     5.54e-36            LactobacillusfermentumIFO3956MAGKLYELSDKYKELSEREDLDPEVLHDTLDAINDAIEDKADNIAAWIDDLTSAAKRKKAKAKEWNDSAKADLNKADSLKKYLIQELTYAGKKKMETDRFLLSTRNNAPSTVIDDETLIPDTFKNTKVTESVDKTAIKEAIKLGEDVPGAHLQASKSITIK
543711..544391                     PHAGE_Strept_Alq132_NC_013598: nucleoside triphosphate binding motifs protein; LAF_0463; phage(gi273809760)     1.11e-91            LactobacillusfermentumIFO3956MIIRSAKNTSRTANWRICIYGNPGVGKTTTVKYLTGKTLVLALDNSDKVLAGKDIDIADFNRTKPDEEITDFIVDMPNLSKQYDNIVIDNISSFERDWFIERGRATKSGINNELQDYSAWTNYFARVISAIYQYPVNILVTAWEKQVPITTANGQTFNQFAPNIRDNVRDMFMGLTDIVGRVVIKPEDGSRGVIMEGNDGVFAKNRLDSRKGCKVEDLFNFADSNV
544384..545730                     PHAGE_Lactob_A2_NC_004112: putative helicase; LAF_0464; phage(gi22296555)            0.0                 LactobacillusfermentumIFO3956MFKLFGYQQELVDKARQSLAKGNHSVLLVSPAGSGKSVIIAEITRLAIEKGGHVMFMVHRKELVDQIIDTFLKDDIDLSHTTVMTVGKIKRRLGKLPTPTLIITDETHHSLAKTYQDIYNWYDNVPRLGFSATPWRLSGKGLKNVYDDMVEGPSVQWLIDNSYLADYTMYGYKSGDDSQLKKSSTGDYTGRSMDDYAKTIIRGDVIKTWREKANERKTIVYCHAVWFSKQVAQVFNNAGIKAAHVDSKTPSGERSKIMVDFKAGKIMVLCNCDLISEGFNVPDCSCVVLLRPTESLVLYIQQSMRPMRFVPGKHAVIIDQVGNFKKFGTPDTPRTWTLEDRKKKKGNGGGQLGPPVRTCEKCFAVIPAQSRSCPICGAEIEVTKTELDIDRDANLDDVTQFKPFSANYVVTKRPSDLKTRQDLEEYAKAKGYKPGWIYYQLKKRGLAH
545750..546310                     PHAGE_Lactob_A2_NC_004112: putative single stranded binding protein; LAF_0465; phage(gi22296556)     2.28e-58            LactobacillusfermentumIFO3956MLFQTNYKDLQDHSYGPLPEGDYEFIIKSVAENATKSGAESIQFNLVVRNDLDQAMPETNGKYHNRQLWVDEWKRRATNQYEVNNLMYFMQAAGISEGTPINTMEDFFDIMTGKPVRIHITVEDNTYNGKTTQVNRPAPWDWQQTKFPQVNHQWKTNKPVTGAQMPTNGQTFTMPQQPAGNEKLPF
546376..548685                     PHAGE_Lactob_CL2_NC_028835: DNA primase; LAF_0466; phage(gi971748054)                0.0                 LactobacillusfermentumIFO3956MYESLPSELKKLSQWGCYHRIWKEERGKYTKIPVNPWTGGPGKSNDSSTWADFDTAMRALDQYPDADGLAFYFANGYVGLDIDHIAEDLERVQCGDTDPDNLVTKAHELTHGSYMEVSMSGEGIHCIFKGKIPGDRRRKGNYEMYQSGRFFALTGNTLNATPEIKSLDDTAMRRLYDHYLHSDKVAEFPKKQPAITENTLSIDEIINRAERSTNGARFRAFMKGGWEPFYPSQSEADMAFANDLAFWCGRDFKAMDSIFRQSSLYRKKYDEKHGKTTYGIALLNKAINETSNVFHPHQPLNVNYDMSFLNKDRDKPKTPRTWDDMGNALRFIDMYGDNFKYSYIDKMWYLYNGSYWQIDQSGMVEKCADSVIKNMDNEKLNIWPGMDESDATEKWVKFKAKCRSNRSKKSMLDEVKHHVPVLHSEFDNDLMLLNTESGYVDLNSGLLKEHDRDKMFSHQTAAEYTDTIDAPEWDKFLHQIFNNDEEVIHYIQKAVGYSATGSIKEQVMLLLYGNGRNGKSVFINTIADILGSYAETMNVESIMVKHSSGVNSDIARLEGARLVISSEANEGSRLDEGLVKQMTGGDKMVARHLYASEFEFTPQFKLWMATNHKPIIRGTDDGIWRRIMLIPFLVQIPKDKVDKELKYKLQREASGILNWIVQGAMMWQAEGLEPPEIIKKASDEYRQEMDAIEFFISEKCERGDGYMAPAGELYDVYKRWSDESGEHQFNKQKFGSEMKAKFNYKHTKHGRYYEGLKIITDSRINFLKG
548986..549330                     PHAGE_Lactob_LfeSau_NC_029068: DNA nuclease; LAF_0467; phage(gi985757765)            9.20e-54            LactobacillusfermentumIFO3956MAQPEHVIQNQIRLALSANQCTVFRINVGKLRLPDGTLFQTGVPRGYSDLSGFRWSDGKAFFIEVKTQTGRPRKDQIQFHHMLTSHGIVHGIARSPEDAIKIVKEGLIGYGFKQ
550838..551746                     hypothetical protein; LAF_0468                                                       N/A                 LactobacillusfermentumIFO3956MSEMTLNYISSYFYLSLVIITGLLYYMGEVKIMERKEKIKSIIEHPEYMMTAERRSLQKRIENKNLDSEEVKSVVTTTAKDKGKSLVSDLLNKKWFDLVCDIADTGDKLKNNLEYAKKVKLLGEYLQKTDNHEKALKSLVDLITDPYGLALYSKIINILSDSPADGDILEILSDYLKNLTQEESLQNVFSRNKTILTLIDKCSPQALILLRMYNKWTEVPSPQTVISNGGHVQGNNTRLVAQTFVEKKVIENVDVDDVQMAIYDLEKNGLAEFISETLNFAPVFAERTTKIGEMVKDAISNN
552537..552998                     PHAGE_Lactob_Sha1_NC_019489: P27 family phage terminase small subunit; LAF_0469; phage(gi418489801)     1.19e-28            LactobacillusfermentumIFO3956MVEKATEDLQPLQMSPPNYMKGTIAGRAWQRITPILRQSTIIKNADRSTVEALCSAIALYRIGFDDVQENGIQTPIYKSVQNNRGEIIDRDFIGFKKNPAVSTMDAAIRQIRSLSSELGLTPTSRASLLSLTTDSDDDDVPSLADVLSGGDGW
552995..554899                     PHAGE_Lactob_Sha1_NC_019489: phage terminase-like protein large subunit; LAF_0470; phage(gi418489802)     1.81e-160           LactobacillusfermentumIFO3956MMRKWDLTKKGQTVEKSYETEKNAGSYNEIFKKYRDPATRYAFAVLEGRQLAGKKIKLDAFRHLQDLRRQTEDPDFNYHYDLEKCRAIINYSKLVPDVNAGKPLPLMVWEQKILCSVIGWRDDNDQLRYMRAIFSVARTNGKTYLATILMSFYFLVESKGQMNHDYLYTAPVTVQSQKGFQYMQSFFTKLSTLPAFKKLFKQQEIVVLHDVIMSRKLHNRLLRMSYKSGQFDSLHCQFAVGDEVGDDHHIGSIIEGNGKITSGQGQEPNHCFLQVSTAYPDSNSQFYKDQQMMEEVMERDYDRSLDDNLCMVWEQDSLDETNQPETWVKSNPILDLNPENHDQLMKSLLSERDNKMANGSLPEFQNKSLNMWLQVKQNTYLDLDDINRAAVDDAPIDIDGRECYVGFDKSNFSDDTSIAFVFPYLDNDKPRYYVKQHSWVPLARAQNNVVLKEKQDGINYRDAEKRGFCDIAKNDYGYIDDGAVYDWLMAYVEAHKLKIKYFCYDKWGLSKMIGWIEQKTDWNTMPVKNVIQNLNEPTVDLRKQFDTGTIRYDHDPIITYSLKNAVLYGNNNGVKIDKEKATTKIDFVDALIDAWYTAMFHFDDISLEKFDAKNPFSGMSNDDINDYFTNDFSF
554914..555096                     hypothetical protein; LAF_0471                                                       N/A                 LactobacillusfermentumIFO3956MIKTIFKLILAVAVVVLWIAALYAFVKFGFAVNVAVGWLTLSVALYMGSRVISALIGGDD
555096..556316                     PHAGE_Lactob_Sha1_NC_019489: phage portal protein; LAF_0472; phage(gi418489804)      5.70e-51            LactobacillusfermentumIFO3956MFNPFKAVIKRSRMLISNGWSPFFSASNGQVVSVGPVNASAALNNSDVFAVVYRISSDVAACQFEAPMVDYMLNHPMGTLINGYNVWQSVVAQMALNGNAYMLIHREGTDGVVTRLEPIPEERVTVTLNDDGSDVFYTVHFDDSNRSGDYQVPSANMLHFRLFVNGQSESQYMGVSPLMSLAKEIDVQDQSNRLALSTLKHALAPTNILSIPQGTLSADAKANIRDEFEKANSGENAGRAIVLDQGLSLSQLTVSPDIAKLLANTNFSQAQIAKAFCVPADYLSGKQDEQSSIEQVRSLYQNSLTLYIRPIEDELTNKLGAPVHLDVSTAVDIDHQQLISNIVSLTNSKNPVLSGDDARQILVDRGVLPKQTYQTATPGNQDLGGDTSANDNGRTNADNGPDDTKQ
556765..558027                     PHAGE_Lactob_Lv_1_NC_011801: protease-scaffold-major head protein; LAF_0473; phage(gi219563201)     4.26e-115           LactobacillusfermentumIFO3956MKGENEVEIDYDKLADAVADKLEQRSAEQADVETTDETDKQDAETTEEPVEEPQEDEEEQSADDSADSDGKPAEKPAEKPAKKVEKPAEKVEKRSEPHAEIVTTENEELKEGTEMRELHGANESTKDQFAHFLKTGEITRDNTAGGIGLSNGQVLIPQDILPAEHEQHQFPRLGNLVRQIAVKHTTGKLPVFQPGSGKLALHTELQSTANSTSPEIKEILWNLKTYTGRYVFTRELMDDSDYNWEAELQSRLVELRDNTEDDLIVTQLTNGITAVKPTNLIDDLKLILDSKLKPYDSNASSIVLSQSAFAQLDQMKDSEGRPLVQPNVTLGTGNAILGKTVTVVDDTLFPSAQQGDVNIVVAPLQKAVIKFKSNEITGQFVDTNDIWYEALGIYMREDVVQANKDVINWVSSTTTSTPGK
558048..558350                     PHAGE_Lactoc_bIL309_NC_002668: Orf44; LAF_0474; phage(gi13095849)                    5.51e-06            LactobacillusfermentumIFO3956MIDTQSMLDELCLDATDETTQLITDLLSQSESIIRDSVDKTKPIASYEQDPIFIRAAKTLCTQLYYDRTLTGGMSIGLQMMISHLKGEVGADGYEPNSTV
558569..559120                     PHAGE_Strept_DT1_NC_002072: putative tail component protein; LAF_0475; phage(gi9632427)     5.49e-41            LactobacillusfermentumIFO3956MPCKSTARCTASWISQCGTTPICHTTWSPSSATERVVKMADIEMSQFLEQWLEDVKSISVDLTPKDQAEITKAGAKVMAERLTDVTNAKHRSHHNDKTYGHAADHISYMAKDVDGETNGLSTVGWDNHYHAMNMMRLNDGYRGHPGDHFVTNLQQDKATSEAVLRAESDKYQELINDKKGDDD
559503..560126                     PHAGE_Lactob_Sha1_NC_019489: major tail protein; LAF_0476; phage(gi418489811)        3.64e-14            LactobacillusfermentumIFO3956MLLHGIKDAWVFLKSADGKSLLVKTDGLSDNGLLELGHDVLGVASAEIKGLDGSKLEKISGNNTPQYSYADPLNPTVALTINSLKMMTYAKLVGLEKQGTGWQMADTKPVGGCVVKAPHMTDDGFTYFCFPSGNFLGGDKKLDSDSDSKKTPVTDTLNFAAIDDPNINDVYRIYDTGDPDWKDEDTMFKEILPDYNKTATAATGSQA
560193..560522                     PHAGE_Lactob_phiAT3_NC_005893: putative tail component; LAF_0477; phage(gi48697270)     1.28e-10            LactobacillusfermentumIFO3956MKLYIKLFNRRFDVSTSNGNVRRVYEMQLRIAKVQAEKDILKRAESELELIQELPKFLGTMLKLNKQQLKQLDNMDFEATQDAVGYICQRILGRTDDQIADEEKEDPKK
560727..564926                     PHAGE_Lactob_Sha1_NC_019489: minor tail protein; LAF_0478; phage(gi418489814)        8.74e-113           LactobacillusfermentumIFO3956MAKISNVMATKVALDLVDASKSVRNLTTEVNASTKAWQAQEASLRSAGDYAGATKARLDGLGSAIDAQKEKISALQEKQESMNNISQETAEEFLRLKERIEQLKAEQASLDDVTGRNKDKYESLGTEISRLEDQQNKLNTGTVKQAETYLRYGAQVDQAKAKLASMEAQQQRAEQQLELQNSGVLKLNASMRAQSALFMAHTERLQAEGRQYQAMGAQVDGLENKINQLRDIQQREMQMLESTRQRMGESSEEYLKQATRVEELGTQIAQTRSKINELNEAMKVTPHTWLDGMSARLDSLQGKADRVSHSFGSMFLANTAANLFSGALATIQAHFTELIARGQEYDVTQQKMVATWDTLTGSANKAQDMVNTVNNLSVKTGQAVDTVDELEQGFYHLHSSKSQADGLTRSMLNMADAVGLNSQQINDVSQDMVHAMATGKVTQGELNQIGAYFPMIDEALAKHYNTSVAGMRQIASAGKLDADTFQQVFEQLGNGKYKEAADNMMGTFFGMERTIKARMPALVGDIEQPFMQMSNPLLESVSKWVSDKRTDALFTQFGRHLMQAFNQITTAFGGKKINVSDALTGGMEAATRAVDRFANVVSSHHTQIKEFFDSFKTGSAASLKIFANVMLDLSKVMLPVLDELAKYPKTTAAVITSLLLASKAVKGLSVAVKGLQIMRTVGSTIGSFATKIKNIPSRKITRIQVDGAKSTRDLEAYSRRLDRIPNSKTTKAIVNTASAETSLTRLGTKATVAGKVGSSGLSLIGRGAKIASAGLDLIGGPAGAIMLVVQGLTILYQHNKKFRTFVNGLASSAMSAMGKMGKAFESGAKSAISWTSNMWDRVKKSYQQGQAQTQQQTLQHARQQQKAWNDIRSNVTNTAQDMMHKAGNAFSNGYNDVINNTSNWRNNASNLWHDASNKILNTAGNLRSNSTNILSNMHDKLSGIQDTGLGHMLGGWKDHFGKVINTIESNGSPLHNAFRDILNGLLSPFTNLINGIIKGINWVLDKVGGDSHKLGTFSIGKLANGTSGGGLLHDQVALLNDGSGPNYQEMVHFPSGETVMLPPERNLMMYLPAQTEVLDGERSAKLAPMMDINHYANGAVGDFFSGLWDKGKDVLDFAEDILKKPIDFMESVFNRFTSGKLDNGGFFSAQLHTSLPVFFAKSMANWVKKQFQEMANPAGSGVDRWRPYVVRALDMLHLSSSLVDKVLRQIQTESRGNPHAKQPGADPDGDGSGPALGLMQTKRKTFDAYKIPGHGDLWNGFDDLLAGLNYARHRYGDSLSALGQGHGYANGGVATQPSIFGEAGAEMAIPLNSMKSSRAWELMRQVVAYYGGNNASQTTTIDTRNMSRQIQELIEVGKAVLAVNGEQVRAIKGINGYDKARVYHQQRTDMDLANFQSFV
564989..565828                     PHAGE_Lister_vB_LmoS_188_NC_028871: holin-like putative tail component protein; LAF_0479; phage(gi971750814)     1.33e-24            LactobacillusfermentumIFO3956MQRPTMWIKLPGQAEINCESITKGLRFLQDDSDPGVTNSYLTDAGLDGSILSYQSIAKNTINANFWLHFGDWYDFKMKKHSIAKFFAQKGLMRIRTDAEPAIVKYVYAGSYSIKPVQDYSHEALFTVAFDNPTGIKYSLGWSDDEMTYGNGLWQVGMNLPNGKHLDYEYIGQRSFKIYNASDITVDPIQRHPMQIIVKNTTGQVEISNQTTGTSIAYRGHLTASDELTWDGVNCYLNGELANNDTDYTYLTLAPGYNDIHVSSTSDADIRFHFKFLYLD
565835..566875                     hypothetical protein; LAF_0480                                                       N/A                 LactobacillusfermentumIFO3956MTVTPLDAINQHRYTYFGFKDVSTADHPYQYLPALCYSDNLTNWNVVQYYPELGNCGAQSVAKIGSWYYVIATGYLMRTKNFVDFDKLDNPLDKQSEFKHVWAPEIFADINGNYHVAYCANKDDSEVTGFDLYVADMTADGQLSKLQQKITFYDGQLGNVRQIDPSIVLYKGIYYLATSGDYLYSATNYLGPYQRVKVNFTPTPQFYGDQWCGNDGWTEAPELVKDGNFLRLFSDMPAKHGYVYRSANLSDLGTWSARSQTVCVDFDMRHGCFMVNPNVEPALYKAEISYDNKFDPAMTIKALHNDQVVPLTCYERTGFQYQYANNQTNQIRSSSTLTMTARQAGR
566872..568434                     PHAGE_Lactob_LF1_NC_019486: phage-associated protein/endopeptidase; LAF_0481; phage(gi418489399)     3.66e-31            LactobacillusfermentumIFO3956MIQVESIITFNDDWFVVKNIQPTIQGSDIVQVTAIQYVNSQIATIHQYNTQQGTLTMRPDDILKYWLNDSTVNPNNKFTYNVVGSFESHRVENLGNGSGKDMLSKITELWPSAVIYPQKNQINVVSADAFTKPTQKRIDYIRDTSEIQMTQDSTNIVNMVRCIGATKQSDTSTAATDSGGVQLTESEATQTTGVDRTAEFQADAKKYLGVPYKWGGHDKSNPYAGMDCSGFVSQVYYDFGVNVPPQTAQMEPYFYQVSDPKCGDVGFYGPHGSTHHICLMLDANTMIYEPEPGEVCKIAPVSSYPPDWYARNNNIQAKINQQKTTTVDNANITFTDNYQSGTYNSEEQYYFEPFMVIDNDSINAWGPYPATSDLQDDRFTDADAMRTYAKTQLSPDPTISIVVTLNSNAKPIAGEQVRLNIQPRHYSTNVTVVGWTWYPFDPTQGTQITYDNLPATILNNRAAMRTLADVEKMARTALANIPQVFYSSEDPTAKHNVKNGAIWVKPINQETGGDAKHADG
575894..575908                     attR                                                                                 N/A                 ATTACTTGTTGTAGA

#### region 2 ####
complement(757018..758007)         PHAGE_Entero_DE3_NC_042057: hypothetical protein; LAF_0654; phage(gi100002)          3.90e-15            LactobacillusfermentumIFO3956MEKRRQVKLEDVAALAGVSKTTVSRVLNNRGYLSEATKQRVHEAMEQLHYRPNAIARQLFTQKTNLVGLVFPTVNDPFFGQLEAGLDECLYENSYRTLMGNSQNNPQKEEQYLQLLLNHQIDGLIVGAHNQAMPDYLQTNLPIVSIERAVAPQIPVVASDNYRGGQLATQRLLDAGCQHIIHTNYPKDVMTTNQDRRKAYEDLMSQAGYPAITYEVNYDTPMEEKKAIFARLFDEHPEVDGIFADNDTNAGLIIQVAKARGRRVPEDLKVVGFDGADGTRILFPELTTVQQSIDQMAAVAVNLLEQQIAGQTNVESVTLPVTLLEGTTG
complement(758029..758475)         PHAGE_Lactob_Lb338_1_NC_012530: N-deoxyribosyltransferase; LAF_0655; phage(gi226377702)     9.97e-10            LactobacillusfermentumIFO3956MRIYLAGPFFSDEQIDRIARAEQALTQNQTVDSFFSPRLSDENSTPLLKEGTPEWAQMIFKKDVEEIDDADLVVAVADFVHANVDSGTAFEVGYAYHSNKPIVIVQELDEPLNLMLGQALTHYTTSVADLATLDFTNLPNHPYSGQTF
758581..759213                     PHAGE_Bacill_vB_BhaS_171_NC_030904: RNA polymerase sigma factor; LAF_0656; phage(gi100049)     9.00e-05            LactobacillusfermentumIFO3956MNSIMILLVVFGGLIFVLGCFYLVNSWQQYHQWKFATLLVLVSLAVTVYGVINLPYWHKNSSAQTSSQTSAKSSSSGTSSNSISGYSNNPALSSSTANMTQEQKEAAVLKQLQSSYSKFGSVAFDSGSKTFQIDPSSGDEADSLKYLAQNPTQASSMGWSSLTDSLDKTSTQVSKLLGSDYSISLMNPNDTSQVMYTTKNGIKTYDIADQ
759152..759163                     attL                                                                                 N/A                 CCAGCCAAGTAA
759261..759349                     tRNA                                                                                 N/A                 GGAGAGTTGGCAGAGTGGTAATGCACCGGACTCGAAATCCGGCGAACCCATGTTGAATGGGCGCGCAGGTTCAAATCCTGTACTCTCCT
complement(759458..760552)         PHAGE_Lactob_LF1_NC_019486: phage integrase; LAF_0657; phage(gi418489411)            5.00e-101           LactobacillusfermentumIFO3956MCIMAQIIKKGPSWMVRVSIMGDDGKQHKKSKAGFKTKAAAKAYAAKMEFQKTTGGVALVSGTLFPDYFKDWFNLYKRSNVTERTALTYHQVYNALKQYLNVPVEDIDRRRYRQFMVDFGSNRAKSTVSKFNSLIHACVKDAMYDGVVHKDFVASTDLVFDKSKTREVDYLSIDEIQRLVSHLVKTRNVHFTSKYMILTAIYTGARLGEIQALTWSDIKNNTISINKSWNETTQDFQPTKNESSIRTINVGDQLIALLKELNFNKKQIFVSQYHTVPTSAAVNKTLRESLKACHINRRGFHFHSLRHSHVAFLLANGIDLYAISKRLGHSDITTTSRVYSYMIDEYKNLTNNQIIKALGKLSSV
complement(761340..762074)         PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; LAF_0658; phage(gi100027)         3.80e-59            LactobacillusfermentumIFO3956MVDHKNKSVIYIGYEITMAVLSIASIFMIVLDYAKSIDITAYPYNVFDNLILTIFTIDYFSRLIASKNKRKFITSNIWDLLSIIPVNQAFYFFRAARIFRIFILLKLLRLVRLVGLIGKLRKFINTNGLIYYIYVSIAVLIIGASMYSISEKVDFATALWWSITTATTVGYGDISPTTSMGKLAAVMVMIIGIGFIGMLTSSISNFFISNDEVNLKEELAKLHNENVQLNDKLDRLEQIIKKKN
complement(762662..762976)         hypothetical protein; LAF_0659                                                       N/A                 LactobacillusfermentumIFO3956MGLFKSKEEKEQEKQAKMQQWLKDRNLEDLSEDDYTQVDRIKTELWGTGFLGALNNIAASDKDLQRNMQNILLGISEQNWLLIKQNDKLAKQNEEIIKLLKDKN
complement(763466..763780)         PHAGE_Lactob_LF1_NC_019486: xre family toxin-antitoxin system; LAF_0660; phage(gi418489419)     1.64e-31            LactobacillusfermentumIFO3956MNIGERIAQLRKSRSMSQFQLAKTLNIATSTLGMYETNKRKPNMEMLEKLADFFGVSVDFLLGRPEKDDLKTADLADDDTIFTYKGQPLSDDDKEIIRRLMNGK
764188..764973                     PHAGE_Lactob_LF1_NC_019486: phage antirepressor; LAF_0661; phage(gi418489421)        1.70e-126           LactobacillusfermentumIFO3956MMEHFNTDSVIRYVGESKQQVIDSRDVAKMIGKTHAHLMRDIDSYKEVLDQNPKLDSDRFFIESSYQAGTGKNYKCYLLTKQGCEFVANKMTGRKGTIFTATYVSLFNEYEAEHNGKTVAIDSSLEHEKLAYKREWLIEMRKQNVNKAHELRNQDVKLYLELGKVADDYQRPRMATDFRNEAICAMQALPVGARREYSATEIGNIIGVSPIAIGKWANKLGVKRDADMSYRDRDGAWRYFPEALKVFQDNALEIQDDDLGL
764977..765141                     hypothetical protein; LAF_0662                                                       N/A                 LactobacillusfermentumIFO3956MVEMKTMGMNGEKLTVDIKLKGLKDVKETTKAFRKLNQELEKTIQLVERLDDLN
765522..765704                     hypothetical protein; LAF_0663                                                       N/A                 LactobacillusfermentumIFO3956MRTVEEFEKETAKCQKPMSDYSRIIVETDEKSPKTLAVITDDDCETVEGLRVRFMPTYKD
complement(765701..765928)         PHAGE_Gordon_Schwabeltier_NC_031255: membrane-associated initiation of head vertex; LAF_0664; phage(gi100034)     3.26e-07            LactobacillusfermentumIFO3956MPKQIWVSPRSNGWAVKSSGSPRASKIYSTKSEAIKAGRQQAINNHAELVSQKRNGQINLKNSYGNDPMPPKDKD
765987..766241                     hypothetical protein; LAF_0665                                                       N/A                 LactobacillusfermentumIFO3956MSPFRYQLNKSEFKAEWRDSTGRPMSESTYQRRRKQAEDYPDAWRVFLPDGRVDIQEYQRFITWLGKQKHKRKQDPRLAVYQEY
766581..766790                     PHAGE_Lactob_LF1_NC_019486: hypothetical protein; LAF_0666; phage(gi418489427)       7.32e-34            LactobacillusfermentumIFO3956MTPDEIKVGQVANQLLKLSEHILTDANRLVLHEPKTRSEAIAEHDAIVKQAEQLVLYAKDWKHEVTGRF
766760..767788                     PHAGE_Lactob_LF1_NC_019486: RecT protein; LAF_0667; phage(gi418489428)               9.63e-159           LactobacillusfermentumIFO3956METRSNREVLIMYQPTNAKQITSAVAERLDTLKDEGLALPAHYNAQNALKAAYLRLQTVKDRQGRPALTVCTEPSIANALLDMAIQGLSPAKNQCYFIVYGNELQMQRSYFGTIAALKRLDSIEDIDAQVIHQGDEFEIGADETGHIIVTKFKPSFANLDKPIKGAFAFIKLTNGRTAYTVMTKAQIDVSWSQSRNRQNKVQDKFSDEMAKRTVINRAAKIFINTSDDSDLLTGSINAVTKAEYEEPTEPKDITQTAAEEQGSTAQLLADFKEAQQAEEKVKPKSAPVQAPEQPVTDEKSKTKEDPKAPAKTSESEPEAKPASETDEHQMSIDDFLKEGQNA
767781..768629                     PHAGE_Lactob_LF1_NC_019486: hypothetical protein; LAF_0668; phage(gi418489429)       0.0                 LactobacillusfermentumIFO3956MLKLTPENYYSHETDWDYMSFSLYKDFTKCEAAALAKLNEDWQPTSSPTPLLVGNYIHSYFESPEAHQAWLDRSETGAKTNRELMMTKPTKTDPDGHLRAEFKLADQMIQTLKNDKLFNFVYMPGEKEVIVTGKIGDHEWKGKIDSLVLNKGYFCDLKMVDDIHKKHWDAKNHQWTNFIEDRGYIMQAAIYKELIKQSFNKNCQPFIFSVSKQTPPDKGAFDFQGDTKFLMQEAIDEIKENQERYWQIMTGEVAPKHCGKCEFFRLTKELSGFQHVTDIEVD
768629..769150                     PHAGE_Strept_Abc2_NC_013645: single-stranded binding protein; LAF_0669; phage(gi281416420)     5.08e-41            LactobacillusfermentumIFO3956MINRVVLTGRLTKDLELKYTQNGTAVARFTLAVSRQYKNKQTGERETDFISCEVWRQPAENLAKYAGKGSLIGVDGRIQTSHYTDRDGKEVYRTDVRIDSFALLSYRNNDANQSEQTGNYQANVNFNAPQEQPNLPPYGGMYANGTPANDAINGQTIDRMETHQPADITDLPF
771189..772376                     PROPHAGE_Escher_CFT073: transposase; LAF_0670; phage(gi26246249)                     5.07e-61            LactobacillusfermentumIFO3956MNQFNKDIIAALSSDKDITLNEVLRRQIEVAANQFLQNELTAVLGYEPHTRIDRSKDDVNYRNGTYTRTIDTEYGEINLTIPRDRLNKFQNALFPPYVRRTDGLEEMVIKMYSKGVTTREIADMVERMYGHYYSPTTVSNITKRTEHLVEEFHERKFKYSQYVCVFLDATYIPLRRGTVEREAVNVAIGIRSDGGKEVLDYSIAPTENGAAWSELLQGLRARGIKDIQLFIADGLVGLQSAIEANYPQAKFQRCWVHAERNLLGYVRKNDRREIITDFKAIRQAENLQAAKEQLAAFSAKWESSYKRRIKNLVQMEELFTFFSFPTAIRQTIYSTNLIESFNKSLKKMVRRKEQFPNEGALDRFIMTQVMEYNDKFENRAHRGFKDCHDTLDSMF
780910..780921                     attR                                                                                 N/A                 CCAGCCAAGTAA

#### region 3 ####
787295..788515                     PHAGE_Paenib_Vegas_NC_028767: transposase; LAF_0676; phage(gi971741608)              2.12e-114           LactobacillusfermentumIFO3956MPKVELNLEDDELKELLLGDRDKVMQSIMAKILDEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGSLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCNNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSESKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAVERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWAAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
789505..790557                     PROPHAGE_Escher_CFT073: transposase; LAF_0677; phage(gi26246249)                     2.94e-61            LactobacillusfermentumIFO3956MGYERYSYAGINTGNNRNGSYERSFDTKYGQLNLTIPRDRNGRFENHTLPTYGRHSDSLETTVIQLYTKGITTAEIAELIEKMYGAHYSKATVSNMTKAVNEQVQAFQQRRLASQYAAIFLDATYLPLKRDTVQKEAFHIAIGIRPDGTKEVLNYQVAPTESTGIWTELLGTLLKQGVKDVLLFVADGLVGLDEGLNRHFPKAKRQRCLVHVGRNLMNKVRVKDRKAVISDFKQVHRAANREAAELKLNEFANNWHQTYPKLIKDLLKMPNLLTFMDFPPAIRQSLYSTNLIENFNKHLKRTTHHKEQFPTEDSLDRFLVSQFNVYNEKSLKRIHRGFKGLQDTLEASFI
790738..791925                     PROPHAGE_Escher_CFT073: transposase; LAF_0678; phage(gi26246249)                     5.75e-61            LactobacillusfermentumIFO3956MNQFNKDIIAALSSDKDITLNEVLRRQIEVAANQFLQNELTAVLGYEPHTRIDRSKDDVNYRNGTYTRTIDTEYGEINLTIPRDRLNKFQNALFPPYVRRTDGLEEMVIKMYSKGVTTREIADMVERMYGHYYSPTTVSNITKRTEHLVEEFHERRFKYSQYVCVFLDATYIPLRRGTVEREAVNVAIGIRSDGGKEVLDYRIAPTENGAAWSELLQGLRARGIKDIQLFIADGLVGLQSAIEANYPQAKFQRCWVHAERNLLGYVRKNDRREIITDFKAIRQAENLQAAKERLAAFSAKWESSYKRRIKNLVQMEELFTFFSFPTAIRQTIYSTNLIESFNKSLKKMVRRKEQFPNEGALDRFIMTQVMEYNDKFENRAHRGFKDCHDTLDSMF
792069..792932                     PHAGE_Bacill_G_NC_023719: gp245; LAF_0679; phage(gi593777701)                        4.13e-22            LactobacillusfermentumIFO3956MIIQTKGLTKTYQSKVVVDHIDLAIKEGSLTALLGPNGAGKTTTISMLTKILNPTSGMIKMKPDIKISMVFQQSILDNDLTVMENLSIRNKLYKEAKSNHIDALIQKIGLTEFINQKYGRLSGGQRRRVDIARALLNQPDIIFLDEPTTGLDIQTRSAIWKLLHSLQSQNNLTIILTTHYLEEADNADEVYIIDHGKIIASGSADEIKTQNSSSKLVIVSEQADQLMALIPSKIIHTQINHKTICLKANSDEALSLLLKFRSFIKTFTYQEGTMDDAFLSLTGRKMR
792934..793779                     ABC transporter permease component; LAF_0680                                         N/A                 LactobacillusfermentumIFO3956MITLTRRNLLLYFRNRPGVFFSLLGAMISFLLYIVFLKKSMISSWKTVPSSHQLLDFWLIGGTLSVTAITTTLTSLGQLVKDKERKVIKDFYLTDLSHFEITMSYMLSAALIGFIMQIVMFTLMIGYFSITDNLTMPWESLPAVICVALFSSLLAVVINMLFIQFISRFDSLNAIGTIVGTASGFLVGTYIPIGILPNFAQLLIKLTPGAYVAAIYRQILMADKLKTAFHGQQSHFEKTMGIKLEWHHLLTGMQTTVLLTIVFLLGIAVLLIVDLIRSKEN
793858..794109                     PHAGE_Lactob_phiAT3_NC_005893: putative transposase A; LAF_0681; phage(gi48697273)     1.98e-52            LactobacillusfermentumIFO3956MPTRYNKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK
794304..795005                     PHAGE_Lactob_phiAT3_NC_005893: putative transposase OrfB; LAF_0682; phage(gi48697274)     1.58e-172           LactobacillusfermentumIFO3956MKIHHELNLELQPLQRRCSPRRISRLMKELDIHSVTVNKWKAASASQTKVEQRPNLLKQDFSTTGLNQKWTADMTYIQTKRNGWCYFSTIMDLHSRRIIGYSFSKKMDTDLVLKTLESAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFENYETAAAVLFEYVHAFYNTKRIHSSLGYQTPLQVEIATLTSQMAA
795975..796643                     PROPHAGE_Staphy_N315: transposase; LAF_0683; phage(gi15927655)                       6.18e-26            LactobacillusfermentumIFO3956MTDYIKNILQIKDPNLHFTDVVFENNDGWETQVFLGTVSLKLDRCPHCGFANTFIKNGHSYQTIKYLSINESCPTMLRIGKQRLRCKNCQDSFMAKTNVVDKYCSIAKAVKHKALTMLESNVSQKDVSKFTGVSPSTIGRLLDSDQALLRFNSRTLPTNIAIDEFRGPQGKYCFIIVDNDTSQIYQILPDRLKSSITHYFDRFSLKERKRVKSVSTDLNSYY
796989..797261                     PROPHAGE_Staphy_N315: transposase; LAF_0684; phage(gi15927655)                       2.76e-07            LactobacillusfermentumIFO3956MDLLFTKWDVPVPFQTVLKTLRKNSEGVYNATVLPYSNGRVEGINRMIKLIQRTAYGFTNFGHFIARIRLHQMGTEAEKRRRQVQAPAAA
