gi|209916829|ref|NC_011413.1|  Escherichia coli SE11 plasmid pSE11-2, complete sequence. 91158, gc%: 50.24%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
6327..6338                         attL                                                                                 N/A                 TCCCATAAAAAT
7069..7875                         PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; ECSE_P2-0012; phage(gi764159894)     6.77e-07            EscherichiacoliSE11MSGSVIHSQSAAMVPAVYSAGQSPRLPVVIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKMLLATLWNTGARINEALALTRGDFSLAPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFAMPESDAVVMLKQLS
complement(8562..9320)             PHAGE_Burkho_KS14_NC_015273: gp37; ECSE_P2-0013; phage(gi327198306)                  4.28e-20            EscherichiacoliSE11MLDGLLHDNMGELKTTHTIMTMTISTAKKSVNISQSNELTEAAYYLPLQAKRVLWLCLIQCYPLKDDPDSVSPVFTVLVADYQKYFKVSVDTASSDVKKGVTALAESSVVFYPKDGEFDEIKRPWLAEAGLKKGRGKWQIEFNYKVMPYLMGLTSQFTTYSLYDCGKINSVRVIRLYESLCQYRSSGVWVTTQEWLSERFMLPESQRSNFAEMKRTFINPALKKINANTPLKAAMTQNEDGRLVFTIVDSKN
9420..9431                         attR                                                                                 N/A                 TCCCATAAAAAT
9914..11119                        PHAGE_Yersin_PY54_NC_005069: plasmid partition protein SopA; ECSE_P2-0014; phage(gi33770537)     6.06e-19            EscherichiacoliSE11MRRDYGSVGTIALRASALLQAMSRDIEAQRKEFNLTQYHQTYTRNAVAKLPKLSRRIVELAVKEMEDSGYEFNKKQVGNVEQYALTIQNVIDIYAHRQIPKYRDIHKEPYVIFVVNLKGGVSKTVTTVTLAHALRVHPDLLRHDLRILVIDLDPQASSTMFLDHTHSIGTVLETAAQAMLNDLDAETLREAVIRPTIIPGVDIIPASIDDGFVASQWESLVTEHLPGLKPSEVLKKTIIDRIAGDYDFVFIDTGPHLDPFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLERLEEEGVEPRLSASIGFMSKMTGKRDHETSHSLAREVYASNILDASLPRLDGFERCGESFDTIISANPVSYPGSVEALKKARTEAERFTKAVFDRIEYIRGASK
11116..12087                       PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; ECSE_P2-0015; phage(gi33770536)     1.15e-15            EscherichiacoliSE11MRKVLARGRVLGNSNSEFARMLESDGDVKTFTLKSGKQAKFVKTVVLSGEIESKTFVDSSVNGRDQAMLSPESVSDISRTIKLQQFFPAIGREVNGRIEILDGTRRRAACIYNNVKFEILVTKDDIELSDARQLAKDIQTAREHSLRELGKRLEVTYGTSMTKEEIAQAENLSPAKVTRAFQAAAVPDEMVAVFPVINDISLPDYHFLLKLAEEANNKQRSVTELMEKVQHRLKTMPDYPAIDKSKILAVIRAESKSLIVRPTRTVQTEKLREFSDRNQFARKKIDSKKRLVVYEFSRISAEAQSEIDEAIKRILERLPESSE
complement(12224..13345)           PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; ECSE_P2-0016; phage(gi431811050)     6.06e-166           EscherichiacoliSE11MGVPWFQLKSVKFPEPVIAFSSNYALYASMSNRVMSHLEELAPGVEQYSIDEMFLDVRGIDSCIDFEDFGRQLREHVRNGTGLTIGVGMGLTKTLAKSVQWASKEWPQFGGVLALTPGNIRRTEKLLSLQPVEEIWGVGSRISKKLNTMGITTALQLARANPVFIRKNFNVVLERTVRELTGESCISLEEAPPPKQQIVCSRSFGERVTTYEAMRQAVCQYAERAAEKLRGERQFCRHIAVFVKTSPFAVNEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWGDGNRYAKAGCMLNDFAPDGVSLLNLFDDTQLRSNSNQLMKVVDGINHSGLGKVWFAGRGIASEWQMKREMLSPAYTTRWSELPVAKL
13432..14430                       PROPHAGE_Deinoc_R1: integrase/recombinase, putative; ECSE_P2-0017; phage(gi15807824)     4.46e-11            EscherichiacoliSE11MHKKLLDALPFLSADPSACRWVCLQEDLLCAPNTIDAYARGVNDWLAFCHSVALTAAVAGRDTVALYVRSLHTGRQLAAATIRHRLTVVRLYNDWLCEEGIRERNPVRRGVWKNGGKGKAGIVPLQRRLPWIPDDAEWLRFLEVAGQADIRTRFMLALAYDCGLRREELCTVATGDIDPSQRLLTVRAEHTKNRFGRVVPYSPVTGELYTAWLTERRMLSSSRGPLFLSRSPRNRAEPISNWTWSKVVRGLAIKADLPLISTHTFRHLCLTELARVGWDIHEIAAFAGHRRIQSTLLYIHLSARDLSSRFNYTVASLHTCRLTVLQQQDPSP
14388..15338                       hypothetical protein; ECSE_P2-0018                                                   N/A                 EscherichiacoliSE11MPPYCTTTAGSFSMMQSEHTAPCPTTSLSLPALLWDTRSEISESELAALDTLVDHFQQGGKNWSPDIQKRLSRLLLPLRDTLTKMHAAKAPYNSSIHDIVLEMQRIRKTYWAWTQEEWLEVICNSEGEFRRRFGASGNCRQYVIALAWLLCGFERLEHCGIFYQYRLCLKVFGRQSTDFAVSQLDNMMQVLGYVPRDSRNNGIRNAMCMAMLLQRDAQLDHITVTTLQQIAATCPDSLREASATLSRILAASGTIEEGVDYRITQRRRPPREYNATADVPTKWLVWCKRWRATSVLRPSSILSGWYVLLKCGQLVS
15319..16638                       phage integrase; ECSE_P2-0019                                                        N/A                 EscherichiacoliSE11MVSWLAECYPTCLSPSDWTRDTAIVWVTAACRMKVGEWANPGGMYRDRRGKMMMPAARARMLGHIRTFFHDLQEWGWIPVRFSPERVFRAPRSLTSLVGPEPRIVADDMWCKLLHAGQNLQESDLPNCVAYPYFYPLEMVRALSVLWLFGGLRRDEILRMQCGCIRWQQPEENNVSRICLIDVPVSKTYAAFTKLVDPIIGEYIEQWELVRNPHPLQEDSKTGESVRFLFMHRGKRVHSSYINNSLIPLLCRKAGIPEQDARGKITSHRARATIASQLYNAREPLDIFELQKWLGHSSPESTRHYVEITPTRLAGSLDKAGYFECNRRMVSVLIDQDAIAEGLVASGKPWRYYDLGHGFCTYDFFEQCPHRMACAKCSFYMPKSSSEAQYLEGRQNLLKLMQEIPLTDDEQAAVENDIQAVDKLLNKLTGGATPGNKRK

#### region 2 ####
complement(82879..83352)           PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; ECSE_P2-0101; phage(gi327198626)     1.68e-47            EscherichiacoliSE11MKLFHGTYEKTAPIIKLGEFAMSGNNVFDGLFACLDRDIAASHGNSIFIYHVDDDKIAESRDLNARFQEVYAFLRNELDTADVEEIADRVIWDNDSDIENFADILSPRLDSDISGAYSWELQRLRGRVAAYLGFDAIEMNDEHGTSYLIVNPQIKGE
complement(83641..84042)           PROPHAGE_Xantho_33913: Tn5041 transposase; ECSE_P2-0102; phage(gi21231545)           9.94e-07            EscherichiacoliSE11MLDWFRDPGLRRRVQAGLNKGEARNALARAVFLHRLGEIRDRGLENQSYRASGLTLLTAAITLWNTVYIERAIESLKRKGIPINEQLVSHLSPLGWEHINLSGDYVWRNNLKLGSGKYRSLRTVDTALYKKQS
complement(84023..85540)           PROPHAGE_Xantho_33913: Tn5041 transposase; ECSE_P2-0103; phage(gi21231545)           2.04e-10            EscherichiacoliSE11MEETRFLSRKGNFDALHLITEKYSTLRKYAPRMLSALQFMATPAAQALSDALDTITEMYRKQLRKVPPSAPTGFIPESWRKLVLTPSGIDRKYYEFCVLNELKGALRSGDIWVKGSRRYKNFDDYLIPTAEFEKSRHNDQLQLAVQTDSQAYLQARMTLLASRLEEVNAMALAGDLPDVDISDKGVKITPLENSVPSGVSPFADLVYGMLPHPKITEILEEVDSWTGFTRHFAHLKNNNVRPKDGRLLLTTILADGINLGLTKMAESCPGATRSSLEGIQTWYIRDKTYSAALAELVNAQKERPLAAFWGDGTTSSSDGQNFRVGSHGRYAGQVNLKYGQEPGVQIYTHISDQYSPFYAKVISRVRDSTHVLDGLLYHESDLEITEHYTDTAGFTEHVFALMHLLGFAFAPRIRDLHDKRLFIHGKAERYPGLQSVISTTCLNIKDIESHWDEVLRLATSIKQGDSHRITDDEKVSQLPKTEWTCQSAERDWPHRTDTIYAGLVP
complement(85614..85964)           PHAGE_Salmon_SJ46_NC_031129: dihydrofolate reductase; ECSE_P2-0104; phage(gi100060)     5.78e-25            EscherichiacoliSE11MLQHIDRLNSIAALGLPDGIALSVHQNRLLKLAREGRKMSSRDLAKFTDVRRYATLVCIITEARATLTDEVIDLHERILGSLFSRGKTHAGRTAPANGKAYSEQAEAVRYRRAGVT
86251..86655                       hypothetical protein; ECSE_P2-0105                                                   N/A                 EscherichiacoliSE11MTMKNSNEKLVHDFYQALEGYDFLTLKSLCSSDFVFYSQIDNPIHGVDGFIASETATLDGFRGFSMKPEVLISEADKVVAYVVFEGIHNNEMHGYKPTGKKVRISLMMLLTIEGGKIKEKRAHFDYNDIVRQIS
86675..87628                       PHAGE_Vibrio_Aphrodite1_NC_042100: hypothetical protein; ECSE_P2-0106; phage(gi100055)     1.58e-06            EscherichiacoliSE11MKKIAILITDDISAFHLSVPLAIFADIIPDHSLFNVVLCSVQGKTIKTSHGMHITPEYDLSVLRTADMVIVPFWPSPDIVPEPQLTEALREAAQHNATIVGLCLGAYALAYSGLLDARNASTHWLYESDFQSRFPNTHLDMNALYVADDNIITSAGTGAGMDCCLYLVRELYGSNIANQIARRMVIPPHRDGGQAQYIQMPFPSATKDRQIILLVETLRQDLARRWTLDELCEVVSMSRRTFTRRFRQSTGMTLVDWLTTERLREAQVLLESTAHSVQKVSELVGFSSATSLREKFIAKFGVSPSVWRKTFRGSEAI
87699..88475                       hypothetical protein; ECSE_P2-0107                                                   N/A                 EscherichiacoliSE11MKFHQIRNATAIIHYAGKKILIDPMLSAKGSFPGFPLTMNRHLRNPLVDLPLPVSEVIDVDAIIVTHTHDDHWDAAARALIPRDMLIFVQNTEDKNELARDGFINLQVLDNEIEYAGIRLIPTHCQHGSDEAFRNPAAAELLGEAMGVILQSDGEKTIYIVGDTIWINDVEQVMHKYQPDIVILNTGYAQVENLGPIIMGKEDVLRTHNILPKAHIISTHMESVNHFGQTRKEIREYVDLNKITDQVSIPEDGEVVNL
88689..88994                       PHAGE_Salmon_SJ46_NC_031129: dihydrofolate reductase; ECSE_P2-0108; phage(gi100060)     7.56e-33            EscherichiacoliSE11MHRLGEIRDRGLENQSYRASGLTLLTAAISLWNMVYIERAIDSLKRKGIPLNEQLISHLSPLGWEHINLSGDYVWRTNLKLEQGKYRSLRSVDSSLYKKQA
