gi|209921952|ref|NC_011419.1|  Escherichia coli SE11 plasmid pSE11-1, complete sequence. 100021, gc%: 50.46%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
26303..26314                       attL                                                                                 N/A                 ATATCAGCACAG
26473..27252                       PHAGE_Mycoba_Squirty_NC_026588: non-functional integrase; ECSE_P1-0036; phage(gi764159894)     8.21e-07            EscherichiacoliSE11MTGLVTLGQLPGTAAQLPVSIDYPAALALRQMALVQDELPRYLLAPEVSALLHYVPDLHRKMLLATLWNTGARINEALALTRSDFSLTPPYPFVQLATLKQRTEKAARTAGRMPVGQQTHRLVPLSDAWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADGVTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQFSMPESDAVSMLKRIP
27432..28076                       PHAGE_Burkho_phiE12_2_NC_009236: gp12, partition protein; ECSE_P1-0037; phage(gi134288738)     4.13e-07            EscherichiacoliSE11MPVIANTHPKGGVGKTTSSVNIVGEMKSDTVDLDTHTGLSIILGLRPEGKEISVKVPKTVDELIEIMTPYKNSDKTLLIDCGGFDSDLTRTAIAFADCVIVPSKDSLTERIGLMHFDGVLDEISSIMGTDITAHLYLCKVNPNKKKFPKLDAILPSFKHLKLMKSRISARAEFEDVIETGMGITESVHGRYSAGGKEVIALIEEINHLIENNKQ
28163..28471                       hypothetical protein; ECSE_P1-0038                                                   N/A                 EscherichiacoliSE11MSKAKFSAQAEKLKNLVDSARLQTSSSAVTATAPSQPNEGAEEVSGRPVAARTKAKNLKAIPLSYFEAHAELKATSKTSLDFSSYIIEAIREKLERDGAIGQ
28885..29865                       PHAGE_Entero_P88_NC_026014: recombinase; ECSE_P1-0039; phage(gi744692717)            6.62e-106           EscherichiacoliSE11MKIFIDDGSTNIKLAWLEDGDVKTLISPNSFKPEWSFSLLDDAAPANYEIDGEKFSFDPLSADAVVTTETRYQYSDVNVVAIQHALQQTGLKAQPVDVIVTLPISEYLDANNQKNKQNIERKKKNVMREVRVQGSDAFVIRSVSVLPESIPAGFSVLAGLEDDESLLIVDLGGTTLDVSHVRSKMTGITKTWCDPNIGVSLITSGVKEQMAVHANTRVSSFQADNIIVHRNEPDYLSRRIYNAEQRESIINVINERQKLLIKRVNDVISRFTDYTHVMCVGGGAEIVAEAVKNLTKVPDERFYLSSSPQFDLVMGMIKMKGGVTNE
29858..30274                       ParB protein; ECSE_P1-0040                                                           N/A                 EscherichiacoliSE11MSDENKSRRCSFELFPDERTGDKIADELIANEKLKERGRFMRAMLVTGAAFAAIDKRLPLLISELLTENTTLDDINKVISSVIPGAFSVEKKLLELLEKQSGLHTSVDCSTPLTEQSLSRNDGEDQTRRNAENMFGDD
complement(30276..31550)           PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; ECSE_P1-0041; phage(gi431811050)     0.0                 EscherichiacoliSE11MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSPEAKALGIRMGQPWFQVRQMRLEKKIHVFSSNYALYHSMSQRVMAVLESLSPAVEPYSIDEMFIDLRGINHCISPEFFGHQLREQVKSWTGLTMGVGIAPTKTLAKSAQWATKQWPQFSGVVALTAENRNRILKLLGLQPVGEVWGVGRRLTEKLNALGINTALQLAQANTAFIRKNFSVILERTVRELNGESCISLEEAPPAKQQIVCSRSFGERITDKDAMHQAVVQYAERAAEKLRGERQYCRQVTTFVRTSPFAVKEPCYSNAAVEKLPLPTQDSRDIIAAACRALNHVWREGYRYMKAGVMLADFTPSGIAQPGLFDEIQPRKNSEKLMKTLDELNQSGKGKVWFAGRGTAPEWQMKREMLSQCYTTKWRDIPLARLG
complement(31550..31987)           PHAGE_Cronob_ENT39118_NC_019934: protein umuD; ECSE_P1-0042; phage(gi431811072)      1.60e-26            EscherichiacoliSE11MSTVYHRPADPSGDDSYVRPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPRPALEPVSDSPEFRTLYPENICIFGVVTHVIHRTRELR
complement(31984..32232)           PHAGE_Sodali_phiSG1_NC_007902: ImpC protein; ECSE_P1-0043; phage(gi89886014)         1.49e-20            EscherichiacoliSE11MIRIEILFDRQSTKNLKSGTLQALQNEIEQRLKPHYPEIWLRIDQGSAPSVSVTGARNDKDKERILSLLEEIWQDDSWLPAA
32343..32612                       hypothetical protein; ECSE_P1-0044                                                   N/A                 EscherichiacoliSE11MWLYACCGLLCSAYPQHFAHGSVNKIPGYPGRAGTLTGLHPMQVCRCRRPPHPVTFRRSSSTRCGFGAAPAFVCGRPVTGAARPDGGRM
32581..33552                       hypothetical protein; ECSE_P1-0045                                                   N/A                 EscherichiacoliSE11MRHGLMEAACERRIPMPNWCSNRMYFSGEPAQIAEIKRLASGAVTPFYRRATNEGIQLFLAGSAGLLQITENIRSEQCPGVTAAGRGAVSPENIAFTCWLTHLQNGVLLDEQNCLMLHELWLQSGTGRRRWEGLPDDVRETITVHFTAKRGDWCDIWGNEDVSVWWNRLCDNVLPEKTMPFDLLTVLPTRLDIEVNGFNGGVLNGVPSAYHWYTERYGVKWPCGYDLNISSQGENFIQVDFDTPWCQPESDVVAELSRRFGCTLEHWYAEQGCNFCGWQLYERGELVDVLWGELEWSSPTDDDELPEVTGPAWIVDNVAHYGG
33549..33860                       hypothetical protein; ECSE_P1-0046                                                   N/A                 EscherichiacoliSE11MKYDGDGRATARFFSDKGCRRAPLFTAPADAARHKRCLWSVSRVRRARDGRFYRSRLASVTVYASPSPFSDERPSSRFRGIFSPSNRRRLRYSTVGLTRYRTR
33937..34620                       PHAGE_Staphy_Stau2_NC_030933: aerobic ribonucleotide reductase B subunit; ECSE_P1-0047; phage(gi100063)     5.68e-29            EscherichiacoliSE11MSRFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKGRPRLPQNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAANDDWFMPEAA
34621..34842                       PHAGE_Entero_N15_NC_001901: gp50; ECSE_P1-0048; phage(gi9630517)                     1.49e-07            EscherichiacoliSE11MNYAGHEKLRADVAEVANAMCDLRTTMNEMEQRYSFNADTLPERLVRQTLFRANRLLMEAYTEILELDACFKD
34856..35290                       hypothetical protein; ECSE_P1-0049                                                   N/A                 EscherichiacoliSE11MYGTCETLCRELAAKYPGDAPLMLVIWSPEEIQALADGMEISLTDHEIRTVLARLEDIPEDQRTESGISSGVAMEIINNVSENRQVTVPAELLASLIQTAEQALWKREWAARDHGLAVPECVTRRQAVINQARTLLKNNRHEND
35336..36112                       hypothetical protein; ECSE_P1-0050                                                   N/A                 EscherichiacoliSE11MNENTTLNALICRHARNLLLAQGWPEETDVDQRNPKYPGWISIYVLLDAPRLATLLINRHGGVLPPLLASAIQKLTGTGAELVLSGSQWQSLPVLPADGTQVFFPYAGEWLTEDEIRAVLDAVRDAVRSVSCRVAEDAQRIRAALTTTGQTLLTRQTRRFRLVVKESDHPCWLDEDDENLPVVLDAILNRGARFSAVEMYLVSECVEHILSSGLACDVLRIPDEPPRRWFDRGVLREVVREARTEIRSMADALAKIRK
35985..36563                       hypothetical protein; ECSE_P1-0051                                                   N/A                 EscherichiacoliSE11MCCVYRMNRPAAGLTVVFCGRWSGKPGPKSAAWRMPWQKSGNDDTGGVNPRLFPAGPRTEHKGSRRRLRFTRPCRAWPCGFSVMWPQRRVRAVPCLHLSRAGVDARVRFAAAVTRSLLPVCRDFPVVHPLRFRGLTLQLPPAVCVRLRLPLRPCIPACSPGFYGGTAPPGVAEYVNNGGKHHAICETCHSEC
36529..36954                       PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; ECSE_P1-0052; phage(gi162135127)     8.04e-17            EscherichiacoliSE11MQYAKPVTLNVEECDRLFFLPYLFGQDFLYVEASVYALAKKMMPEYEGGFWHFIRLPDGGGYMMPDGDRFHMVNGANWFDRTVSADAAGIILTSLVINRQLWLYHDSGDAGLTQLYRMRDAQLWRHIEFHPECNAIYAALD
37424..37435                       attR                                                                                 N/A                 ATATCAGCACAG

#### region 2 ####
38961..40919                       PHAGE_Gordon_Hedwig_NC_031099: recombination endonuclease subunit; ECSE_P1-0058; phage(gi100054)     7.73e-08            EscherichiacoliSE11MSVVKSEPDTTRKASRKSAKTQETVLSALLAQTEEVSVPLASLIKSPLNVRTVPYSAESVSELADSIKGVGLLQNLVVHALPGDRYGVAAGGRRLAALNMLAERNILTADWPVRVKVIPQELATAASMTENGHRRDMHPAEQIAGFRAMTQEGKTPAQIGDLLGYSPRHVQRMLKLADLAPVILDALAEDRITTEHCQALALENDTARQVQVFEAACQSGWGGKPDVRVIRNLITESEVAVAGNSKFRFVGADAFSPDELRTDLFSDDGDGYVDRVALDAALLEKLQAVAEHLREAEGWEWCAGRMEPVGECREDAGTYRCLPEPEVVLTEAEDERLNELMTRYDALENQCEESDLLEAEMKLMRCMAKVRAWTPEIRAGSGVVVSWRYGNVCVQRGVQLRSEDDATDDADRTEQVQEKASVEEISLPLLTKMSSERTLAVQAALMQQPDKSLALLAWTLCLNVFGSGAYSKPAQISLECEHYSLTSDAPSGKEGAAFMALMAEKSRLAALLPEGWSRDMTTFLSLSQEVLLSLLSFCTACSLNGVQTRECGHTSRSPLDSLESAIGFHMRDWWQPTKANFFGHLKKPQIIAALNEAGLSGAARDAEKMKKGDAAEHAEHHMKDNRWVPGWMCAPHPQTDATERTDNLADAA
40974..41408                       plasmid SOS inhibition protein B; ECSE_P1-0059                                       N/A                 EscherichiacoliSE11MKTELTLNALQSMNAQEYEDIRAAGSDMRRNLTHEVMREVDAPANWMMNGEYGSEFGGFFPVQVRFTPAHERFHLALCSPGDVSQLWMLVLVNCGGQPFSVVQVQHIFTPVAISHTLALAATLDAQGYSVNDIIHILMAEGGQA
41405..42124                       plasmid SOS inhibition protein A; ECSE_P1-0060                                       N/A                 EscherichiacoliSE11MSARSRALIPLSAEQQAAMQAVAVTEQRRRQGRTLSAWPYASAFFRCLNGSRRISLTDLRFFAPALTKEEFHGNRLLWLAAVDKLIESFGEVCVLPLPSDAGHRLFPSVPFREGERRRQKTTLTEQKYSRQREREAERREREYQTCFAQAQIDLAFHTPATVGSWLSRWSGVVEEHDLETIFWGWCGRFPSLSSFDRFFWQEEPLWRLIFEAGEAGRGAPVQVRALEQWMIPNKLENAI
42121..42717                       PHAGE_Entero_N15_NC_001901: gp43; ECSE_P1-0061; phage(gi9630509)                     4.92e-18            EscherichiacoliSE11MMKSDEQYQVPVWMRPLLPLLCNTGGNDPEELLNDTETTASANIVRYVLIVAVRSQIDLLQLLYRKGLLRTEIPGGFSPEEAQELLDNLVRSHISKALSGERMAARDRNADLTWIRQQLVDAAWFVRATLEAHGMGVGNESPSAPPETMPDIQTRELVMLIKRLASSLKAVKPDSSVVREAQDWLCDRKLVDITDILR
43180..43680                       PHAGE_Rhodoc_CosmicSans_NC_028677: ArdA; ECSE_P1-0062; phage(gi966199624)            1.27e-10            EscherichiacoliSE11MSVVAPAVYVGTWHKYNCGSIAGRWFDLTTFDDERDFFAACRALHQDEADPELMFQDYEGFPGNMASECHINWAWVEGFRQARDEGCEEAYRLWVEDTGETDFDTFRDAWWGEADSEEAFAVEFASDTGLLADVPETVALYFDYEAYARDLFLDSFTFIDGHVFRR
complement(43820..44119)           hypothetical protein; ECSE_P1-0063                                                   N/A                 EscherichiacoliSE11MAAEGLTAPSGAVALHTVRCAGSAVSGATGAARPERSLQAWFFRHRTVAAARNRASGFGGDWRVRQQLPVGVGPDDRMPPGSREPKVSPPPEIRTTETT
complement(44101..44304)           hypothetical protein; ECSE_P1-0064                                                   N/A                 EscherichiacoliSE11MDLSDGASVTTSRGSCPGADAKFFAGFMAKNFVDGISSPGLLKRDVVTPAPGKSTAGNRPQGWRRKG
44409..44843                       PHAGE_Yersin_fHe_Yen9_04_NC_042116: hypothetical protein; ECSE_P1-0065; phage(gi100356)     2.96e-16            EscherichiacoliSE11MTVSSTISVFCRDGVFRTVYCHLHGEPTWNGRILHTHYATGQQAEALVEHGDIRCLGPRCDKPAGHTLQNPVDGVTAYYGRDSGFRMDSEAREYRSFMEAIATESTEEVRFHYVFIDGYWKVMYRTPEGWKMKALALALRRCPK
44937..45203                       hypothetical protein; ECSE_P1-0066                                                   N/A                 EscherichiacoliSE11MRPSIIFATAEYVKRLREECLRENKPLHRHTRFRRQELAQDEINPDVLAMSGHIARRCSEQKRVRIPAMKVSEWGHLLRALEIERVCH
45268..46182                       PROPHAGE_Escher_MG1655: predicted transposase; ECSE_P1-0067; phage(gi16131287)       1.33e-100           EscherichiacoliSE11MSKKKTTTTPTPHDAAFRSFLANPDVARDFLELHLPAEYRQLCDLSTLKLEPATFVEPDLHQYASDILWSVKTTGGEDGYVYTLIEHQSTENLYMPFRMLRYSVAAMQRHLEQHKTLPLVIPVLFYHGERSPYPYSMNWLDCFENPALAAKIYTKPFPLVDITVVDDNEIMNHRRMAALTLLMKHIRHRDMMELLDKLPQVMVEISDEQVRVLIHYIVNAGDSVSPEFMRALAERLPQHEDKLMTIAERLEQKGRQEGRMEGRMEGALEKALAIACQLQKMGMTPEQIKQATGLSDDELKKITH
46245..46403                       hypothetical protein; ECSE_P1-0068                                                   N/A                 EscherichiacoliSE11MTIAERLIQKGALEVAREIACRLRDMGWPPERIQEATGLSGEELKKLFPDEQ
complement(46434..46685)           PHAGE_Erwini_PEp14_NC_016767: hypothetical protein; ECSE_P1-0069; phage(gi374531851)     3.25e-06            EscherichiacoliSE11MTGWELRIWRKSMLWSREKASREFGVTQRTWHAWENAEQVDVTVWRTTQALSVRDLLPHMQGMRKADIIRRLENELGETAEDV
complement(46744..47256)           hypothetical protein; ECSE_P1-0070                                                   N/A                 EscherichiacoliSE11MSPHRHDCRVSQVISRRSEAPSAVRVFGDFPAVDLSDGGRSPRHGAVVRGQTQKFLTPAAKTFASGTSLPWTAETGCGRVCSPGKSVCGEQAAERRQAERTAPSGAVALHTVRCAGSAASGATGENRRHNNGMWWSLAHHSRTGENRENRTTFTTKKSEISSLFYTYLSR
47258..48109                       PHAGE_Pseudo_phiPSA1_NC_024365: DNA restriction methylase; ECSE_P1-0071; phage(gi658307732)     1.97e-17            EscherichiacoliSE11MMNQTLPTADLNTAGTTDVIPSVAIDRIIAQRNEGIALFMQAMECLATARRILLDASGDIFLYGFEDCVTDSVRRMDKPEEAKRNITRLADRKIWDRLMTDTGMYTFMSSCQRDEWNNQLMSDTCPEITLDNVLATFRHLNASKMQTFEQGLIDVYRKLSWDYRTNNPCRLGKRIIIENMLYRWSNGRVTLDCSGREALDDLVRPFYLLDGRNVPDFRNSIGAQYGEFLGNGDNVGKLLEGEYFTVRGYQKGTVHIVFKRSDLVEKLNDIIARHYPGVLPPRV
