gi|254778738|ref|NC_012973.1|  Helicobacter pylori B38, complete genome. 1576758, gc%: 39.16%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
820662..820674                     attL                                                                                 N/A                 TTTGGCTTTCTTT
complement(821379..822710)         PROPHAGE_Escher_Sakai: ATP-dependent protease ATP-binding subunit HslU; HELPY_0831; phage(gi15834112)     5.36e-138           HelicobacterpyloriB38MSKLNMTPREIVAYLDEYIIGQKEAKKSIAIAFRNRYRRLQLEKSLQEEITPKNILMIGSTGVGKTEIARRIAKIMELPFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKEKLKDKIEEAVIEKIAKKLLPPLPSGVSEEKKQEYANSLLKMQQRIAQGELDSREIEIEVRKKSIEIDSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDSEAIKMEGLKRAESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRDLLPIVEGSVVNTKYGSIKTEHILFIAAGAFHLSKPSDLIPELQGRFPLRVELENLTEEIMYMILTQTKNSIIKQYQALLQVEGVGIAFEDDAIKELAKLSYNANQKSEDIGARMLHTTIEKVLEDISFEAEDYFGQKVTITKELVQSKLEDLVADENLVKYIL
complement(822710..823252)         PROPHAGE_Escher_Sakai: ATP-dependent protease peptidase subunit; HELPY_0832; phage(gi15834113)     1.98e-51            HelicobacterpyloriB38MFEATTILGYRGEMGGKKFALIGGDGQVTLGNCVVKANATKIRSLYHNQVLSGFAGSTADAFSLFDMFERILESKKGDLFKSVVDFSKEWRKDKYLRRLEAMMIVLNFDHIFILSGTGDVLEAEDNKIAAIGSGGNYALSAARALDHFAHLEPRKLVEESLKIAGDLCIYTNTNIKILEL
complement(823256..823705)         50S ribosomal protein L9; HELPY_0833                                                 N/A                 HelicobacterpyloriB38MKVLLLEDVKNLGKAGEVCEVKDGYGNNFLIANKKAKLATNEVINKYKAEVKKRAEKEALEKAQKLQMVETLQTITLTIHKKVGANGSLFGAITKEEITERLKEQHASLNLDKKDIELKHPIKSTGIYEIEVKLGSGVVGAFKIDVVAE
complement(824052..825281)         PHAGE_Hypert_2_NC_014321: IS element Dka2 orfB; HELPY_0835; phage(gi300116745)       1.61e-12            HelicobacterpyloriB38MTLTERHIIKPTHPIFKRIKDFCHLSKNLYNYANFILREHYFAGFKLPTAYDLINRFVKESQRDYKALPAQSAQQVLMLLSQNWKSYLKALKAYKLKPSSFLARPKIPKFKPKDGVSIGVLTNQQTSFTKGRMTKIKFPKKANLKRLITKINPQTSRLKQVRLIPKTTCFIVEVVYEQTTHKLPQTHGIGIMGIDLGLNNFVTAIDNQSSPFIIKGGGVKSVNQWFNKLKAHYQAKAKTSNKRFWTKRLGKLALWRECKVNDFMHKASAYVVRHCLKKGISTIVIGKNDGWKQELKLGKRTNQNFTNIPYESFIEKLAYKSALVGITLRTTEERFTSKCDHLANEPMQHHEQYLGKRVKRGLFKSSIGKSLNADINGAIGILRKVFPDAVKTLRDSGVVFAPVKISLAF
825095..825107                     attR                                                                                 N/A                 TTTGGCTTTCTTT
complement(825268..825900)         PHAGE_Campyl_CP21_NC_019507: putative transposase, IS607 family; HELPY_0836; phage(gi422935176)     8.87e-35            HelicobacterpyloriB38MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYARVSTQKQKQDLHNQIENCISFINAKGISVDSIYSDIKSGMSLDRKGFIELLNAVMAFKIKAVYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLEQELFEDIMQTIHSFSMKMYSKRRIAKKLLLESKVNPALLKSLNGETDDLD
complement(825897..826082)         PHAGE_Entero_EF62phi_NC_017732: ycfA-like family protein, putative toxin component; HELPY_0837; phage(gi384519802)     4.53e-06            HelicobacterpyloriB38MPRLTAKEAEKLLLQNGFVFSRQKGSHRIYVKDKIRQVLPFHSGEILHPKIVKEIMENILK
complement(826084..826302)         PHAGE_Paenib_Harrison_NC_028746: antitoxin HicB; HELPY_0838; phage(gi971482390)      2.16e-07            HelicobacterpyloriB38MLINAVIEKDENGYFAFVPFLKGCVSQGKSYEEALRNIKEAIELYLEDLEADELAFLSKKNSVIAPIEIAFA

#### region 2 ####
1298972..1298985                   attL                                                                                 N/A                 AAAACCCTAAACAA
complement(1310261..1310962)       PHAGE_Flavob_FpV4_NC_041872: recombination endonuclease subunit; HELPY_1323; phage(gi100054)     1.84e-17            HelicobacterpyloriB38MKLFDCVPLSLAWREFLQSEFKKPYFLEIEKRYLEALKSPKTIFPKSSNLFYALNLTPPSAVKIILLGQDPYHSTYLKNDQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANLGVPVPCCGDLSAWAKRGMLLLNAILSVEKNQAASHQYIGWEAFSDRILERLFETISPLIVVLLGKVAQKKIALIPKNKHIIITAPHPSPLSKGFLGSGVFTSVQKAYREVYRKDFDFSL
complement(1310959..1311660)       putative 1-acyl-glycerol-3-phosphate acyltransferase; HELPY_1324                     N/A                 HelicobacterpyloriB38MKSNSLRAIYRALVIAIGLAVIIVFNYFNRKNNNARSSRRACSCFFPLTGVTLEKIGAFDTDAKLIVLNHQSLLDIIYLEAYHPSNICWIAKKELGEIPFYGHALTDTGMILIDREDKKGIVSLLKACKEKLDQNRPLVIFPEGTRGKGGEKFLPFKQGAKIIAEKFQLKIQPMVLINSIKIFNSKPLEAYKARTRLVMLESYTPDFNSPTWYEELQERMQKEYLKHYHELNA
complement(1311647..1312762)       hypothetical protein; HELPY_1325                                                     N/A                 HelicobacterpyloriB38MKTITIVSLILSFLVSFLVAENTSDPEEIKAKVVYVKIPQLEDLENNPVYIGQIIGVTYDLLLFDAEFLEAKIKDGWDKTQIELLNKMPKWKKVEKELFRATYYYKIKGVKAIIPSLEVSAFSNKDKYIDHSIAPKVALQVTDLSKNPRYANVMAKDLQVLQYKTKDYDDKNNILVMELAFKEATWEDFHIKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTLQNLSFDYFSLSNKQFKTLSFSTIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLVLFFIFGRKLIFLGLGILCLGFVLYHLLFTQKSAVLLAHKKIRILPTQNSTILGLSKNEMPIKILGSHDDYYKILTPHEQIGWVKKDEVK
complement(1312825..1314204)       PROPHAGE_Escher_MG1655: carboxy-terminal protease for penicillin-binding protein 3; putative; phage signal peptide; HELPY_1326(gi16129784)     5.09e-32            HelicobacterpyloriB38MVLLTMTKRLFKGLLAISLAVSLHGGEVKEKKPVKPVKEDPQELAAKRVEAFSRFSNVVSEIEKKYVDKISISEIMTKAIEGLLSNLDAHSAYLNEKKFKEFQAQTEGEFGGLGITVGMRDGVLTVIAPLEGTPAYKAGVKSGDNILKINNESTLSMSIDDAINLMRGKPKTPIQITIVRKNEPKPLVFNIIRDIIKLPSVYVKKIEKTPYLYVRVSGFDKNVTKSVLDGLKANPKAKGIVLDLRGNPGGLLNQAVGLSNLFIKEGVLVSQKGKNKEENLEYKANGRAPYTNLPIAVLVNGGSASASEIVAGALQDHKRAVIIGEKTFGKGSVQMLLPVNKDEAIKITTARYYLPSGRTIQAKGITPDIVIYPGKAPENENKFSLKEADLKHHLEQELKKIDDKTPNSKEADKDKKNEEEKEVTPKMINDDIQLKTAIDSLKTWSIVDEKMDEKAPKKK
1316041..1316298                   PHAGE_Paenib_Harrison_NC_028746: antitoxin HicB; HELPY_1331; phage(gi971482390)      2.47e-07            HelicobacterpyloriB38MCIIIRNSLKGSAMLINAVIEKDENGYFAFVPFLKGCVSQGKSYEEALRNIKEAIELYLEDLEADELAFLSKKNSVIAPIEIAFA
1316300..1316485                   PHAGE_Entero_EF62phi_NC_017732: ycfA-like family protein, putative toxin component; HELPY_1332; phage(gi384519802)     4.53e-06            HelicobacterpyloriB38MPRLTAKEAEKLLLQNGFVFSRQKGSHRIYVKDKIRQVLPFHSGEILHPKIVKEIMENILK
1316482..1317114                   PHAGE_Campyl_CP21_NC_019507: putative transposase, IS607 family; HELPY_1333; phage(gi422935176)     8.87e-35            HelicobacterpyloriB38MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYARVSTQKQKQDLHNQIENCISFINAKGISVDSIYSDIKSGMSLDRKGFIELLNAVMAFKIKAVYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLEQELFEDIMQTIHSFSMKMYSKRRIAKKLLLESKVNPALLKSLNGETDDLD
1317101..1318330                   PHAGE_Hypert_2_NC_014321: IS element Dka2 orfB; HELPY_1334; phage(gi300116745)       1.55e-12            HelicobacterpyloriB38MTLTERHIIKPTHPIFKRIKDFCHLSKNLYNYANFILREHYFAGFKLPTAYDLINRFVKESQRDYKALPAQSAQQVLMLLSQNWKSYLKALKAYKLKPSSFLARPKIPKFKPKDGVSIGVLTNQQTSFTKGRMTKIKFPKKANLKRLITKINPQTSRLKQVRLIPKTTCFIVEVVYEQTTHKLPQTHGIGIMGIDLGLNNFVTAIDNQSSPFIIKGGGVKSVNQWFNKLKAHYQAKAKTSNKRFWTKRLGKLALWRECKVNDFMHKASAYVVRHCLKKGISTIVIGKNDGWKQELKLGKRTNQNFTNIPYESFIEKLAYKSALVGITLRTTEERFTSKCDHLANEPMQHHEQYLGKRVKRGLFKSSIGKSLNADINGAIGILRKVFPDAVKTLRDSGVVFTPVKISLAF
1324252..1324265                   attR                                                                                 N/A                 AAAACCCTAAACAA

#### region 3 ####
1509299..1509311                   attL                                                                                 N/A                 CCCCCTTTTTTAA
1513588..1513599                   attL                                                                                 N/A                 AAGCGTTTGAAA
1513749..1514027                   PHAGE_Helico_phiHP33_NC_016568: hypothetical protein; HELPY_1520; phage(gi371671342)     2.54e-11            HelicobacterpyloriB38MRQRNETKTSFNKLMEITQAIQAIQTQKNSQQTSDNANTSEITSQSTPKPKETARTKNSALKPTKRAFSERQRITRLETTHKQALKEIKRGR
1514027..1515151                   PHAGE_Helico_phiHP33_NC_016568: integrase/recombinase; HELPY_1521; phage(gi371671343)     4.26e-151           HelicobacterpyloriB38MHNYTIYLRGNAIYLSYIKNSKRHRESLSKLIKSLNLDNNQALEYLEGLSLEKILKMQKGVLKSNKEPEQESLKTAKKIKKDTSIKQAKERFFNQKIGLKEESLRFMHLRFSTILKLMNVKESLKVSKITKESVTNYHNNAFKKYKKNTLVSLNSLLKSFLEFCEKEGCIDKTPYFKITMKNAKEGEKIDPFSLNEVKAILKSTPDLRLKAFLTTAFFTGLRTGEQLALLWSDIDFKNKKINIDKSLNLSGVITSPKNKPSIREVDLLEPVEKILKELKATEPDTKKMIFLSVPKRTQDFQRAFKKLLKALNLKDRKLYATRHTFASLMLSQGEEAMWISQTLGHKDLNTTYKTYSHYIPKQDKERAKFLKGIL
1515148..1515288                   PHAGE_Helico_phiHP33_NC_016568: hypothetical protein; HELPY_1522; phage(gi371671344)     1.86e-17            HelicobacterpyloriB38MKENNKENTLGVFHYLAYKRIKESNTDLSFFDFIQKLEKLQKKIHD
1515363..1515683                   PHAGE_Helico_phiHP33_NC_016568: putative transcriptional regulator; HELPY_1523; phage(gi371671345)     7.29e-42            HelicobacterpyloriB38MEQEKLQPIDLEVLKALYKKAYLPKTADKISKDLNIDYYCTLKIFNKLERKGLCDQWVINKKREKDKKNNYYKVCYLNDLGKDLCVYLNALKAINQPKKRVNNDHL
1515670..1515810                   putative Hac prophage II protein; HELPY_1524                                         N/A                 HelicobacterpyloriB38MITYDIDKKQPKKSKKTILEAKSKIFLSALIALIFTLAFLFKMKGE
1515811..1516740                   PHAGE_Helico_phiHP33_NC_016568: putative phage replication protein; HELPY_1525; phage(gi371671346)     5.30e-53            HelicobacterpyloriB38MNYILKNNLNVESNYTKTANSILIDSPLSRDARIVFITLSSLASSFNPRVEFLCKQLDMNAKTLNKYLKELVQKGFLKIIYYKNKLGKFLGKRAYILAPTKEQLEQDDFIIVDESNRTETPKFTMRKIDKKQAEKPLKAEVCTETPIFTTLINKKNNNKHEKMNLNVSENLQNQADQKNKHDNFSCFNGSKIKNFSMFKRFSDFVFSILGNLDTRGLEKRDKKAFERFLHYRNEKIKLTYATKKALLKQALELKEQGQDIVKCVDQSIRKGYNEIYALMEFKSSRTAQKQEEEPFEYKPNPKYNGYCIW
1516951..1517241                   PHAGE_Helico_phiHP33_NC_016568: hypothetical protein; HELPY_1527; phage(gi371671348)     3.44e-17            HelicobacterpyloriB38MRKHGINLNDPIEELLKTTRKKLMLRESNYKKLKMMKRKKRYTFARVVRLVILEGIRKFQKENLFLNLQMQDFEIAISILEQKTKRRQKEGKKCRI
1517410..1517421                   attR                                                                                 N/A                 AAGCGTTTGAAA
complement(1517857..1519086)       PHAGE_Geobac_E3_NC_029073: transposase; HELPY_1529; phage(gi985758489)               1.61e-10            HelicobacterpyloriB38MTLTERHIIKPTHPIFKRIKDFCHLSKNLYNYANFILREHYFAGFKLPTAYDLINRFVKESQRDYKALPAQSAQQVLMLLSQNWKSYLKALKAYKLKPSSFLARPKIPKFKPKDGVSIGVLTNQQTSFTKGRMTKIKFPKKANLKRLITKINPQTSRLKQVRLIPKTTCFIVEVVYEQTTHKLPQTHGIGIMGIDLGLNNFVTAIDNQSSPFIIKGGGVKSVNQWFNKLKAHYQAKAKTSNKRFWTKRLGKLALWRECKVNDFMHKASAYVVRHCLKKGISTIVIGKNDGWKQELKLGKRTNQNFTNIPYESFIEKLAYKSALVGITLRTTEERFTSKCDHLANEPMQHHEQYLGKRVKRGLFKSSIGKSLNADINGAIGILRKVFPDAVKTLRDSGVVFAPVKISLAF
complement(1519073..1519705)       PHAGE_Campyl_CP21_NC_019507: putative transposase, IS607 family; HELPY_1530; phage(gi422935176)     8.87e-35            HelicobacterpyloriB38MKSKEVLKILKISRVTLWKYVKSGKIRVKQEPNGYYIYNDSDVYSLAGIEDGRLNVVYARVSTQKQKQDLHNQIENCISFINAKGISVDSIYSDIKSGMSLDRKGFIELLNAVMAFKIKAVYISYKDRLARLSYELVEKLFSDYGTKIVIINQCESISLEQELFEDIMQTIHSFSMKMYSKRRIAKKLLLESKVNPALLKSLNGETDDLD
complement(1519702..1519887)       PHAGE_Entero_EF62phi_NC_017732: ycfA-like family protein, putative toxin component; HELPY_1531; phage(gi384519802)     4.53e-06            HelicobacterpyloriB38MPRLTAKEAEKLLLQNGFVFSRQKGSHRIYVKDKIRQVLPFHSGEILHPKIVKEIMENILK
complement(1519889..1520146)       PHAGE_Paenib_Harrison_NC_028746: antitoxin HicB; HELPY_1532; phage(gi971482390)      2.47e-07            HelicobacterpyloriB38MCIIIRNSLKGSAMLINAVIEKDENGYFAFVPFLKGCVSQGKSYEEALRNIKEAIELYLEDLEADELAFLSKKNSVIAPIEIAFA
1521000..1521977                   Cysteine-rich protein G; HELPY_1534                                                  N/A                 HelicobacterpyloriB38MLRGVKKAVFRVLCLGALCLGGLMAEQDSKELIFSGITIYTDKDFTRAKEYFEKACRLNDADGCAILREAYSKVILKGSARESIEKALEHTATAKACKSNDAEKCKDLAEFYFNANDLKNALEYYSKSCKLNNVEGCMLSATFYNDMIKGLKKDKKDLEYYSKACELNYGDGCAILGDIYHNGEGVTQNFKKAFKYYSKACELNNGEGCSKLGGDYFLGESVTQDLKKAFGYYSKACELNEALTCTLVGEFYRDGEGVAKDLKKAFEYSAKACELNDAKGCYALAAFYNEGKGVAKDEKQTTENLEKSCKLGLKEACDILKEQKQ
complement(1522016..1522879)       PHAGE_Clostr_phiCDHM11_NC_029001: hypothetical protein; HELPY_1535; phage(gi971764697)     1.18e-16            HelicobacterpyloriB38MSDSLLHKDIQALIARLKHQDLSLSMLEKSLSRLIYDEINLEYLKACGLNFIETSENLITLKNLKTPLKDEVFSFIDLETTGSCPLKHEILEIGAVQVKGGEIINRFETLVKVKSVPDYIAELTGIAYEDTLNAPSAHEALQELRLFLGNSVFVAHNANFDYNFLGRYFVEKLHCPLLNLKLCTLDLSKRAILSMRYSLSFLKELLGFGIEVSHRAYADALASYKLFEICLLNLPSYIKTTMDLIDFSKCANTLIKRPPRAKYQETPSPFSLFERTKGLFNIIKATS
complement(1522857..1523510)       ribulose-phosphate 3-epimerase; HELPY_1536                                           N/A                 HelicobacterpyloriB38MKVAPSLLSADFMHLAKEIESVSNADFLHVDVMDGHYVPNLTMGPVVLENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEKHPHRVLQLIRNSGITPGIVLNPHTHEESVKYLLESVGLVLLMSVNPGFGGQKFLDLVLEKCLKVKELIRRYNPSCLLEVDGGVNDKNIFELQQAGVDVVVSGSYIFKSKDRKLAIEGLQNVRQPLA
1523581..1524453                   fructose-1,6-bisphosphatase; HELPY_1537                                              N/A                 HelicobacterpyloriB38MDYKHFKGKHANIVIEIISLLEKGVKKAQEILEKPDAGSYTKLENSSGDTPIKADLALDKFLEENFLSLENIKSVFSEEKETPVTKENGSYLIAYDPLDGSSVMEANFLVGTIIGVYEKDYKVQNLVASLYVVFGHKIELVVALDKVYRYAFYQNKFHFIETIVLENKGKIVASGGNQKDFSLGLKKALEGFFAENYRLRYSGSMVADVHHVLIKKGGMFSYPQKKLRKLFEVFPLALIIEKAKGEAFYFDKGVKKRLLEQSVENYHEKSECYLASPHEAQILEKYLKGE
1524453..1524656                   hypothetical protein; HELPY_1538                                                     N/A                 HelicobacterpyloriB38MQNSAKKLEYEERFNDALLKLQACQEEKQVTSCLKCEQVLNCKIRNSYVDAAYESMSLGEAGGFDFN
1524669..1525565                   PHAGE_Pseudo_vB_PsyM_KIL4_NC_042054: RI membrane protein; HELPY_1539; phage(gi100135)     2.08e-28            HelicobacterpyloriB38MASNTILQKNLDAFYTHPKIARFCLDLLKDLINQNLGLDLNKFHFLEPSAGSGSFVGALKELGIADWDALDIAPKAQGIQKKDYLLELIEFDKKRVIVGNPPFGHRGKLALDFLNKSLNEAPIVAFILPNLFKRYSIQKRIDKRAKLVLNADLEKNAFIFNERPYDVKCVFQIYMHKNIALNLKDERIIAPPKIRHSDFITYIHNNTPHTLKYFNKEKYQWDFAVVRQGFYDYNEKITNANLLIKNRQYFFIKAHSKEALRIIHKIDFNKLAHKNTQVLGFSTYDFVEEYCKLKEMHA
1526393..1526405                   attR                                                                                 N/A                 CCCCCTTTTTTAA
