gi|260681769|ref|NC_013315.1|  Clostridium difficile CD196 chromosome, complete genome. 4110554, gc%: 28.56%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(273673..273966)         putative spore coat protein; CD196_0225                                              N/A                 ClostridiumdifficileCD196MRNMIENLIKNNTYIDDKVIMLSMLSSAKASANMYLNSALTSSTPELRAIYSASLTQMVEGHTALTELSINKGWVKPYDKPIQQLTCSYKESQNVID
complement(273972..274187)         hypothetical protein; CD196_0226                                                     N/A                 ClostridiumdifficileCD196MRTLSETEKISLAAVIKMESDGLLMQRAINMLISDEDLKRQSESSILATEGRIKAIQQFIVENEILISEEV
complement(274732..275244)         putative nitroreductase; CD196_0227                                                  N/A                 ClostridiumdifficileCD196MLEVIKNRRSIRTYIDKNIEEDKITEILKSAMQAPSSKNAQPWEFIIVDDKELLKELSKSQHRAKHIEFAPLCIVVLGNRDKFLKPGKWIQDLGACTQNLLLEVTNQGLAACWAGVFPKNKVVNKVKQILDLPVKLVPYALISIGYSEEKNEFIDRFDENKIHRNVYKNR
                                   PHAGE_Prochl_Syn1_NC_015288: phosphoribosylaminoimidazole-succinocarboxamide synthase; CD196_0229; phage(gi326784002)     3.85e-61            
                                   PHAGE_Pseudo_UFV_P2_NC_018850: glutamine amidotransferase; CD196_0230; phage(gi410491852)     5.98e-06            
                                   PHAGE_Synech_S_CAM8_NC_021530: phosphoribosylaminoimidazole synthetase; CD196_0231; phage(gi514050953)     2.73e-78            
                                   PHAGE_Synech_S_SKS1_NC_020851: cyanobacterial phosphoribosylglycinamide formyltransferase; CD196_0232; phage(gi472340960)     8.11e-34            
                                   PHAGE_Prochl_P_SSM2_NC_006883: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase; CD196_0233; phage(gi61806062)     2.52e-73            
                                   PHAGE_Microb_Min1_NC_009603: putative phosphoribosyl formylglycinamidine (FGAM) synthase II; CD196_0235; phage(gi149882852)     1.66e-36            
                                   PHAGE_Entero_phi92_NC_023693: Phi92_gp064; CD196_0236; phage(gi726646997)            3.31e-48            
                                   PHAGE_Escher_phAPEC8_NC_020079: putative glucose-1-phosphate thymidylyltransferase; CD196_0237; phage(gi448260372)     1.10e-122           
                                   PHAGE_Entero_phi92_NC_023693: Phi92_gp065; CD196_0238; phage(gi726646998)            1.42e-59            
                                   PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; CD196_0239; phage(gi100279)     1.71e-45            
                                   PHAGE_Bacill_Pony_NC_022770: endolysin; CD196_0240; phage(gi568191551)               7.14e-28            

#### region 2 ####
                                   PHAGE_Lactoc_bIL312_NC_002671: Csp; CD196_1219; phage(gi13095918)                    6.83e-21            
complement(1431575..1432360)       putative peptidyl-prolyl isomerase; CD196_1221                                       N/A                 ClostridiumdifficileCD196MKYTMKELTIMEKKVLATVGEKEITNIDIENALKSLDPYQAMQFKTEEGKKHLLNDLVNQELFFLDAKEEKLDEEEIFKLEMKKIEENVLKQFAINKVLSSVNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEISFEDAALKHSSCPSKDMGGDLGTFGRGQMVPEFEEAVFSMAKGEVSEPVKTQFGYHIIKLEDLQESTESTFDEVKAEVEKSLLYQKQNEVYGNKINALNAKYGNLVKYND
complement(1432451..1432867)       hypothetical protein; CD196_1222                                                     N/A                 ClostridiumdifficileCD196MYKEKLFDNYFKFLALLFWPIMWYKWIVISNGTLENMLFTIYAIVAIIFIILYSVFMIKYKDITQIDFFYRISTLLAFIFTLFSFLIYPKSLFFLYLKIIFTGIYLYYSIVKTLKFKDDEGVVGIMSSLLLIVITLFY
complement(1433031..1433537)       PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; CD196_1223; phage(gi209901280)     1.73e-09            ClostridiumdifficileCD196MNNLDKLFELASQEEIIIHYTTYIAGDLEGLYINKHGIKIISLLSNLKQNSKKLTSILAEELGHHFTSLGYYVSSYNDYYTKIIIDKCENKALKWACEFLITEEDIINIINSGITCVYEMADILNVDITFFQKRLEFLSLKKQSLQLGNNKYLILTNLPYFYIFDPIS
complement(1433619..1433939)       PHAGE_Clostr_CDMH1_NC_024144: putative repressor protein; CD196_1224; phage(gi640884900)     3.19e-17            ClostridiumdifficileCD196MFAKRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYLLGRTLVKENIDTVAAHRKNPHEELPEEAQEQLNDYIEFLLNKYKKK
                                   PHAGE_Brevib_Jimmer1_NC_029104: XRE family transcriptional regulator; CD196_1225; phage(gi985760854)     1.28e-09            
                                   PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; CD196_1226; phage(gi209901307)     3.18e-40            
                                   PHAGE_Clostr_phiCD119_NC_007917: hypothetical protein; CD196_1227; phage(gi90592649)     1.53e-22            
                                   PHAGE_Clostr_phiCDHM19_NC_028996: putative tail sheath protein; CD196_1228; phage(gi971763880)     7.44e-111           
                                   PHAGE_Clostr_phiCDHM19_NC_028996: putative tail core protein; CD196_1229; phage(gi971763881)     6.39e-40            
                                   PHAGE_Clostr_phiCTC2B_NC_030951: hypothetical protein; CD196_1230; phage(gi100045)     5.86e-17            
                                   PHAGE_Clostr_phiCDHM19_NC_028996: hypothetical protein; CD196_1231; phage(gi971763883)     8.14e-05            
                                   PHAGE_Clostr_phiCD481_1_NC_028951: hypothetical protein; CD196_1232; phage(gi971820114)     3.39e-15            
                                   PHAGE_Clostr_phiCD481_1_NC_028951: LysM domain protein; CD196_1233; phage(gi971820115)     1.97e-61            
                                   PHAGE_Clostr_phiCD481_1_NC_028951: NlpC/P60 family protein; CD196_1234; phage(gi971820116)     0.0                 
                                   PHAGE_Clostr_phiCD481_1_NC_028951: hypothetical protein; CD196_1235; phage(gi971820117)     4.81e-65            
                                   PHAGE_Clostr_phiCD481_1_NC_028951: Phage protein XkdS; CD196_1236; phage(gi971820118)     2.71e-83            
                                   PHAGE_Clostr_phiCD481_1_NC_028951: XkdT protein; CD196_1237; phage(gi971820119)      3.97e-180           
                                   PHAGE_Clostr_phiCD481_1_NC_028951: hypothetical protein; CD196_1238; phage(gi971820120)     7.24e-67            
                                   PHAGE_Clostr_phiCD481_1_NC_028951: putative phage tail fiber protein; CD196_1239; phage(gi971820121)     3.37e-58            
                                   PHAGE_Clostr_phiCD211_NC_029048: hypothetical protein; CD196_1240; phage(gi981220878)     0.0                 
                                   PHAGE_Lister_A118_NC_003216: gp22; CD196_1241; phage(gi16798805)                     4.73e-06            
                                   PHAGE_Clostr_phiCD111_NC_028905: putative holin; CD196_1242; phage(gi971820067)      2.15e-48            
complement(1452307..1452762)       hypothetical protein; CD196_1243                                                     N/A                 ClostridiumdifficileCD196MGLRDKFAQSFARSKTMSGPEKKANEIMGKLLLKKAILPIVLMFVIIIAGAMLKINSWVTLGINLVIAVGAFFYIRNSSKKYQNFKPYVGNLISLEKKGKKEYVAIIKQGKLPVKLQIAYGGEDLEHVKKNQMVQISYNPDAKIAILVNRQ
complement(1452990..1453409)       PHAGE_Brevib_Abouo_NC_029029: transcriptional regulator; CD196_1244; phage(gi971767216)     2.80e-10            ClostridiumdifficileCD196MDTLGERIVYLRKAKNLKQYELEEMLGCDNLSKFERNIRKPNYEILKSIAEIFNVSVDWLLNGDNLSHKSDLICDSSSNYPLNSINSNEIKLLNNFRKLNDYDKAKIEGMIELKLHEYEKEKDLGKIEYNKNKDEKIDK
                                   PHAGE_Bacill_BCJA1c_NC_006557: cro; CD196_1245; phage(gi56694875)                    1.21e-10            
complement(1454375..1454782)       PHAGE_Paenib_Vegas_NC_028767: helix-turn-helix family domain XRE family transcriptional regulator; CD196_1247; phage(gi971741618)     2.56e-09            ClostridiumdifficileCD196MYFVDTLGKRIAYLRNSKKLTQRKLMDILKFENLGKYETGDRKPNCDILMSIADYFNVTTDWLLYGKEKVNVNSSVKEDKEDYLHVTNDEMMILNLYRQLNERDKIKIEGILELKISEYKDLKKHSSNNNEDKMV
complement(1455194..1457698)       PHAGE_Mycoba_Enkosi_NC_028936: transporter-like protein; CD196_1248; phage(gi971757643)     5.87e-11            ClostridiumdifficileCD196MVFTLNHNTSIKNKDSNPKIFLVLTLYLLGIFMGAIDTGIVSPARTIIQNSLGVNEKTGIWMITIYTLTYASVIPISGKLADKIGRKYVYLVSIFLFGSGSLICGLSSLFSNFYILLIGRVIQAIGGGGIMPIATAEFGTTFPENKRGMALGLVGATYGIANILGSSIGSTILSIFGTQNWKWLFFVNLPICLIILIGGVFCIKNNKSESKEKIDKLGTLMLICIIVSLLYGLMNIDFFNFKNSIQDISVYPYLLTFIVLIPIFIFIENRAKDPILSFEYFLNPRILIVLILSLIVGIGMMGMVFVPQYAENALKINAGSGGYFVAILGLFAGIAAPLSGRLIDKFGAKKILLLGFSVSMIGSLYLVLIALKTNTVFSVCVSLIFMGLGMGFTMGTPLNYMMLSNTRLEESNSALATLSLIRSIGTSISPAIMIGFIAHAGLSVQDNIMDLVGKPSTPKIVQLEELENMIDDLKSDPEMAKNLKNVSIPNMNDTSNINMDMTGGKLPKSLLNKVQSADTTNITNITKEISTTMFDEKVPSIITKIQKNVQKGIDGTQSGINGIEDGENKLNSGIKGVQTGIDNMVKARAGINQGIDGVKKGIAGVDKGIKGMEQGLEKQDEAIKELTTAYNKIPTTEKTPTDNENNSNEQNQSNTSNSESDDTKNDSTENKNNNSSENKPNVNEQKESLNAQIQQLKKTRDDLNTKLQKNKTQKNELSKKLRSMESQKKELQSKLNNSINQKKDMEKSLDTMQQQKKSLQAVLAKTQEVKTEIPKAFDKSKLDYINSIENNRTKIENTLQSTLNSGFKQMYITVFCVNLLAFIILLFYKENKTR

#### region 3 ####
1673218..1673237                   attL                                                                                 N/A                 TATTACAACTTAAGTAAATA
complement(1673422..1674552)       PHAGE_Clostr_phiMMP01_NC_028883: putative integrase; CD196_1438; phage(gi971820006)     5.60e-165           ClostridiumdifficileCD196MKGGVRKRSNKWYYYFDLGIVEGKRKKVERVGGNTKKEAEKALREALNEYENSGIVFEESNISLSDYLDFWYKEYVLLNCKYNTQESYRINIEKHIKPKLGAYKVKALTPAILQNFINKKYKEDYSQNTLQVLKAILHRSLKSAVHPYKHIRENPMQYVSIPKTKSKTETNKVKTITLEEFNQILNIFPQDSFQRIVLLIGFHTGMRRGEIIALKWDNIDLDNKTITVKHTLIKKPNGMFELGQPKTESSCRTIFTGDTLIKALKEHKLYQKKMKLKYGEFYFDSDWVCTKENGQQVNTHTLDTIVRQIRVALNNDFHFHSLRHAHATLLLENGANIKDIQNRLGHSQLSTTMDTYSHVTDKMKNETVDIFEKITN
complement(1674631..1675338)       PHAGE_Pseudo_PaMx74_NC_028809: putative HIRAN domain-containing protein; CD196_1439; phage(gi971745289)     1.10e-05            ClostridiumdifficileCD196MSIKNGKDFLYVIWKDPKSRRQFIIGKLAKNGLYEFSYEYEIDEAIKAGFNALISFDDISKTYYSEDLFSPFASRLPDKKRKDINKILDKYDMSEYDTYELLKRSGARLPIDTLEFVDPIPLDIDKNIIRYFYIAGVRHYAGCEGHECDNSIELESNEALVLELEPENKFDPHAIKVFDKKENHIGYIPRYYSGELTSIINRGLKYNCIIKFVNKENNCDECIKVKLEILFDEYN
complement(1675351..1676220)       HipA-like protein; CD196_1440                                                        N/A                 ClostridiumdifficileCD196MIKNFDEWKEYDGFSYGSGRSEKIWLINEKTKDIGLFKFPKTKETGEYWAEKLACEIASLLKIPCANVEIGTYNKRIGSMSYLINKNDEKLIEGVWLINKYYPCYNTDKLYDYKNNEYYSLKMIFKSIEEYNIKNDFLKMLIFDYLIGNRDRHQNNWALLESQNKITLSPLYDNGSSLCCYVNIENIDSFFTDHQRFEALINTRSRSRIRIDGKNKKEPTHLEVLKYLNSNYYEQTIDFVEKIINLMNEVNINTLIDNYSENIISPKLKKLLKIYLKEKVLRIKNIYNL
complement(1676840..1677346)       PHAGE_Lister_LP_030_2_NC_021539: DUF955 domain containing protein; CD196_1441; phage(gi514051963)     3.75e-09            ClostridiumdifficileCD196MNKLDALLDLANNEEIEIYYTDKIADDIKGLYINRQGLKIISLLNSLKQNNAKLIEILAEELGHHFTSVGNYVSSKNSYKNKILIDKTENKALKWACEFLITEEEIIHVINSHATSVYEIAEELQVSINFLLKRLEFLSKKKSMLDLGNNRFLVLTNLPNFYIYEDIF
                                   PHAGE_Staphy_StauST398_1_NC_021326: putative prophage antirepressor; CD196_1442; phage(gi509140148)     4.47e-35            
                                   PHAGE_Clostr_CDMH1_NC_024144: putative anti-repressor protein; CD196_1443; phage(gi640884902)     4.28e-114           
                                   PHAGE_Entero_phiFL4A_NC_013644: hypothetical protein; CD196_1445; phage(gi281416448)     1.29e-05            
                                   PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; CD196_1446; phage(gi100016)     1.42e-130           
                                   PHAGE_Bacill_CP_51_NC_025423: hypothetical protein; CD196_1447; phage(gi725949688)     6.35e-06            
                                   PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; CD196_1448; phage(gi100017)     5.09e-68            
                                   PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; CD196_1449; phage(gi100018)     0.0                 
                                   PHAGE_Clostr_phiCT453A_NC_028991: hypothetical protein; CD196_1450; phage(gi100019)     0.0                 
                                   PHAGE_Entero_phiFL4A_NC_013644: DNA helicase; CD196_1451; phage(gi281416462)         0.0                 
                                   PHAGE_Clostr_PhiS63_NC_017978: gp40; CD196_1452; phage(gi388570666)                  6.81e-37            
                                   PHAGE_Clostr_CDMH1_NC_024144: putative regulatory protein; CD196_1453; phage(gi640884940)     2.39e-89            
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative phage-related terminase small subunit; skin element; CD196_1456; phage(gi971819963)     2.06e-162           
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative phage terminase large subunit; CD196_1457; phage(gi971819964)     0.0                 
                                   PHAGE_Clostr_phiMMP01_NC_028883: Phage portal protein, SPP1 family; CD196_1458; phage(gi971819965)     0.0                 
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative head morphogenesis protein; CD196_1459; phage(gi971819966)     0.0                 
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative scaffold protein; CD196_1460; phage(gi971819968)     3.16e-130           
                                   PHAGE_Clostr_phiMMP01_NC_028883: Capsid protein; CD196_1461; phage(gi971819969)      0.0                 
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1462; phage(gi971819971)     4.34e-88            
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1463; phage(gi971819972)     6.13e-70            
                                   PHAGE_Clostr_phiCP39_O_NC_011318: hypothetical protein; CD196_1464; phage(gi208429862)     4.21e-59            
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1465; phage(gi971819974)     1.99e-96            
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative sheath tail protein; CD196_1466; phage(gi971819976)     0.0                 
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative core tail; CD196_1467; phage(gi971819977)     1.56e-94            
                                   PHAGE_Entero_ECP3_NC_027335: hypothetical protein; CD196_1468; phage(gi849119997)     1.37e-49            
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1469; phage(gi971819979)     8.78e-64            
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1470; phage(gi971819980)     7.61e-18            
                                   PHAGE_Clostr_CDMH1_NC_024144: putative anti-repressor protein; CD196_1471; phage(gi640884877)     3.73e-167           
                                   PHAGE_Clostr_phiMMP01_NC_028883: conserved exported protein of unknown function; CD196_1472; phage(gi971819982)     3.13e-120           
                                   PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; CD196_1473; phage(gi640884878)     1.40e-64            
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative tail tape measure protein; CD196_1474; phage(gi971819984)     0.0                 
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative LysM; CD196_1475; phage(gi971819985)       1.16e-140           
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative phage cell wall hydrolase; CD196_1476; phage(gi971819986)     0.0                 
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1477; phage(gi971819987)     9.79e-48            
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1478; phage(gi971819988)     4.90e-89            
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1479; phage(gi971819989)     0.0                 
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1480; phage(gi971819990)     3.57e-146           
                                   PHAGE_Clostr_phiMMP01_NC_028883: putative tail fiber protein; CD196_1481; phage(gi971819991)     1.55e-172           
                                   PHAGE_Clostr_phiCD27_NC_011398: hypothetical protein; CD196_1482; phage(gi209901263)     2.00e-109           
                                   PHAGE_Clostr_phiCD6356_NC_015262: hypothetical protein; CD196_1483; phage(gi326536870)     2.03e-50            
                                   PHAGE_Clostr_phiC2_NC_009231: hypothetical protein; CD196_1484; phage(gi134287367)     1.67e-34            
                                   PHAGE_Clostr_phiMMP01_NC_028883: hypothetical protein; CD196_1485; phage(gi971819995)     1.68e-49            
                                   PHAGE_Clostr_phiMMP01_NC_028883: Holin; CD196_1486; phage(gi971819997)               3.56e-50            
                                   PHAGE_Clostr_phiC2_NC_009231: putative abortive infection bacteriophage resistance protein ORF 37; CD196_1487; phage(gi134287370)     0.0                 
                                   PHAGE_Clostr_phiMMP01_NC_028883: Endolysin; CD196_1488; phage(gi971819998)           0.0                 
                                   PHAGE_Bacill_0305phi8_36_NC_009760: low copy number virion structural protein; CD196_1489; phage(gi156564190)     2.56e-14            
1730955..1730974                   attR                                                                                 N/A                 TATTACAACTTAAGTAAATA
