gi|295691862|ref|NC_014106.1|  Lactobacillus crispatus ST1, complete genome. 2043161, gc%: 36.88%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
542781..543368                     PHAGE_Vibrio_PWH3a_P1_NC_020863: resolvase domain-containing protein; LCRIS_00539; phage(gi472342379)     1.73e-27            LactobacilluscrispatusST1MAKIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGANTNRPELQKMLAYIREGDIVMVTELDRLGRNNHDLTKIMNSIQNKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKQQGKYHGRKPQYAKDDPRLQHAFKLYRAGMSDIDVSRNTGIKRTTFIRYRVKYGIKRK
543441..544157                     PHAGE_Lactob_LfeSau_NC_029068: head morphogenesis protein; LCRIS_00540; phage(gi985757729)     7.56e-08            LactobacilluscrispatusST1MLANASPSDKLSKRLQAIFAQASISRRDMLGAMIGAGMNIATAKSESFAVNELKQQYIDGYNNSSPNKLSTVPDKVANQAEYSQRIWVHGDVMTTRMKETLNKGLSRRMKKSDINKMTRSIPQSGDRIDDNLTTPMNQMLSRIHTLTTNEAIRNSNGGKNRAYDEQNVQYVMWLTEEDDRVCDICEPLDRQTFAYGQAPIPVTDTHPRCRCQLVACDEDGNLLSGELDRVFKEQKKPT
complement(544276..544524)         transglycosylase-associated protein; LCRIS_00541                                     N/A                 LactobacilluscrispatusST1MHWLWVLIIGAIIGAIAGAITSKGKSMGWIANIVAGLVGSSIGEAILGSWGPQLAGMAIIPSIIGAVIVVAVVSFFVGKSKN
complement(544887..545807)         PHAGE_Staphy_phiPV83_NC_002486: transposase; LCRIS_00542; phage(gi9635740)           5.44e-64            LactobacilluscrispatusST1MGTSTLSRFQRGALAQLVNEGNKSYQVMADALGVAKATISYELDRVKPYDPELAQQDADRKRRNCGRRSMLTAALATLITNHLRLTWSPETIAAAYNLSTASIYNWLNRGWLPFKLTDLPNRNVRQHRVSENRGKFTSGTSIEQRPTTVNQRLAFGHWEVDTVLSSRSESRSCLVTFVERKTRLLWAIKAPNRTAKALNTAFGKFMGAFGPQVKSITVDHGKEFANYQALEQDYQIKVYFCHPYSPWERGSNEYFNRRLRWFFPKKTNFSQVTTDEILAALELINQRPLKIHHQQTAIERFRACSD
545952..546236                     hypothetical protein; LCRIS_00543                                                    N/A                 LactobacilluscrispatusST1MKYQLEYDKLALTEPFYYEERGEWLDCLQIWLRFSPIFTVPKGDTPIEVPLNLKDGTKKMLSDLVRVAFDGKNLLLRTFKILWFNMKLLHTVEV
complement(546375..546749)         hypothetical protein; LCRIS_00544                                                    N/A                 LactobacilluscrispatusST1MNKQEFDPNLVTQFLNQYQDRGMMKWQGFYLSDHTASLNKVDREDEIKLNRRHSEQMALNEIESCLSQALEKSQVVRVERSLQDQNGYVAPFIEGKIEGYYQDKLMIGGEFIAINEIYAISLMK
complement(546742..547065)         PHAGE_Bacill_SPbeta_NC_001884: IMPB/MUCB/SAMB family protein; LCRIS_00545; phage(gi9630142)     2.20e-11            LactobacilluscrispatusST1MKINATNDNGLLAAYAITLFRDKWQGEAVRNISISCAGLVDDNVVQLNLFDTKYKTLKNRNLDRTVDDIRKKYGFTSLIKLSSKSVGATAVQRAGLVGGHAGGNSYE
547215..547838                     PHAGE_Clostr_c_st_NC_007581: putative IS transposase (OrfA); LCRIS_00546; phage(gi80159862)     3.80e-32            LactobacilluscrispatusST1MKANQVMEILQISRSTLKRYREKGFINAVQKPTGQFEFDDDSVWLFKNKHTPRQTILYGRVSTYKQKHDLANQMQELRDFAENKGYHVDNSFSDIASGISFKNRKQFFKLLDLVLAGKVERVIITHQDRLSRVGFELFEYLFKNYGTAIETISNELNPKTDEEELFEEIISLLHCFSMREYSHRRVERKLIESTLNQKGGEKDGKKE
547822..549150                     PHAGE_Hypert_2_NC_014321: IS element Dka2 orfB; LCRIS_00547; phage(gi300116745)      2.21e-08            LactobacilluscrispatusST1MAKKNKQVPRNDLQYEQLASEYLIKANPKLDEYSLVAHNLYNRALFDLRQGFFKKRYIKGYSQLDQIFKERYQKRELMLYHSLGYVQSAQQTLREVTTVWQAFFKALKAYKANPSKFSGKPRLPRYLRDKRHTFFVTNQNAKVKDGYLIVPKLDLKLKLAPNIEKIGRVAFKPVANGYKVIVPYKANKEIKYLPDNGKYIGIDPGIDNAFACASNTGNRPLLINGRGIKSVNQYYNKKRAELRQLQARHHQLERIINTKQGKKVVYQDTQAMKKITAWRNDKIRQFAHKASKRIVDYALNCEANTIVIGKNKSWKRSSNMGKRNNQNFIGIPHQVMIDMIKYKANLAGITVIQTNESYTSQTSSLDHEQPCWENGNKSRKRQGKSPVNRRIKRGLFKANDDRLINADINGALQIIRKVFSNFQVNDEIAGVVLRPVKWSPKF

#### region 2 ####
complement(1758141..1759286)       PHAGE_Clostr_phiCT9441A_NC_029022: XRE family transcriptional regulator; LCRIS_01727; phage(gi971821672)     1.22e-66            LactobacilluscrispatusST1MALRINGTRLKEARLFNHLTMSSLADQVGVSKQAISKYEHNKIEISSNVFQKLVQVLNFPLYFFTDVEKVPYQDDGTFYRSRLTATQSDKQPSKTYKKAAAYLRDYFENYIDFPTLDTNIELDGSPENAANELRELWQLDDRPINDIVDLMERHGLIIVNVDFNSNKIDARSGYVEIGEKQYYIVLVNAENTNFFRDQFTLAHELGHYAMHAKLYHPQEDLLGQDYRNIENEANKFASAFLMPKDNFTADLTRDDFIDLDTFINLKSKWNVSIAAMVHRAHDLELIDDREYVKLQKQISYRGWRTKEIMDDEKIMSEPKALNQAFELLEEHQVVHPKDLNDKLREMYGIVFPNKILSQILGIDLDKFRSSIVRLKTSEIKK
complement(1759270..1760001)       hypothetical protein; LCRIS_01728                                                    N/A                 LactobacilluscrispatusST1MEKLKRDDEVLRKIVPGATITKIEVKDDYTEEAGGKYINGLSFNVWDHRFNTISAAIASTPWLVEIPIDRHIWKAIGVFNTKDGTLYLITSYANFIAVQRKIKKGKYSHYMYPLTINNATTAEQLSLDGFENDDAIAEKRLKEAKEILGDDFTRLKRTIIITYDYFEDAAVNGLEILVDNNFSVIDRLVIPEYKSPSPDDDTIKHDNQEKSAEKQKSDRIVKWNANKIRRPITGEENNNGTSN
1760176..1760400                   PHAGE_Gordon_Schwabeltier_NC_031255: hypothetical protein; LCRIS_01729; phage(gi100034)     3.01e-09            LactobacilluscrispatusST1MKKTQHVVHHSTGGWDVKASGSKRATKHFETKASAIEYGRNIAQNQHTEFFTHGKNGRIQSRDSYGNDPFPPKG
1760411..1760632                   hypothetical protein; LCRIS_01730                                                    N/A                 LactobacilluscrispatusST1MTNNTKLVFNLLEKNASSERPTNITCDTNEILQQSGLSVANFNKAVNELREQGIIKTVLGNNIVADIELLRIN
1760711..1760914                   hypothetical protein; LCRIS_01731                                                    N/A                 LactobacilluscrispatusST1MDFKASHKIQPATQLKKDRFVTPEPMNKLFEKDLIMIKLNDLSSETEEGIASKLFTGVIKAFRFLVH
complement(1761259..1762485)       PROPHAGE_Shewan_MR-1: IS110 family transposase; LCRIS_01732; phage(gi24375433)       2.61e-10            LactobacilluscrispatusST1MQVTFGIDVSKSTSTVCELIGESKNELTITNNRPGFIQLLHELTAFSKHPQIIFEATGVYSRTLQSFLEDYGYDYVILNPLKAKKEMDMGLRHNKTDKTDAYHLALIQRLYHHPINQLQSQTYKQLNALSRFYDQLTADLVMAKNRLHQALQSTFPEIENLFSSAKGKNYWQIVVRYPHCDLVRREDKKQLINWLMSLKGIAFKHALRTADKLIELAYQAYPVVSCSSIEVEQVQYYAHRLLNLSDQRENLIARMVKLAKSLPNHDLENIESIPGFAQTTAVRVLAELGDLRRFSNPNKINAFIGIDPGRYQSGEMDSNLSITKHGNAVARKLLYRAIGQIDNAAKTNPCHIADYYESKKLSSQIKGFKKIAIASIHKLIRTIYALIINDQPYDYNVATHNQKDFSCN
complement(1762749..1763735)       PHAGE_Entero_phi92_NC_023693: Phi92_gp064; LCRIS_01733; phage(gi726646997)           2.52e-35            LactobacilluscrispatusST1MKAFVTGVNGQLGHDVMNELAKRGYEGVGSDLAPEYAGVDDNTAVTKAPYVALDITDAEAVDKVISEVNPDVIIHCAAWTAVDMAEDDDKVAAVRKVNVGGTQNIANVAKKLDVPMVYLSTDYVFDGQGTKPWEPDFKGYKPLNVYGETKLGGEKAVANTLDKYFIVRIAWVFGVNGHNFIKTMLKVGANHDEVRVVDDQIGTPTYTFDLARLLVDMIETDKYGYYHATNSELPATESGYDENGTKTGYISWYDFTKEIYRQAGYKTKVTPVTTAEYGLSKAVRPFNSRLDKSKLVENGFKPLPVWPDAVRRYLEILKKQGFFDELGK
complement(1763756..1764364)       PHAGE_Entero_phi92_NC_023693: Phi92_gp065; LCRIS_01734; phage(gi726646998)           4.05e-56            LactobacilluscrispatusST1MGQIKVEKNVGGIEGLAVITPTVHGDDRGYFMETFNQRDMMDAGFSINFVQDNQSSSTKGVLRGLHFQKHYPQIKLVRAVRGSVFDVAVDLRSESKTYGKWYGVELTAENKKQFLIPQGFAHGFLVLSDVAEFCYKVNDFWHPNDEGGMAWNDPEIGIKWPHVKGDYPGSADASGYTLDDGTKLNLVERDQEWKGLKDTFKF
complement(1764390..1765274)       PHAGE_Entero_phi92_NC_023693: Phi92_gp066; LCRIS_01735; phage(gi726646999)           2.02e-119           LactobacilluscrispatusST1MKGIILAGGSGTRLYPLTLVTSKQLLPVYDKPMIYYPLSTLMLAGIKDILVISTPADTPRFKELLGDGSQFGIKLSYKVQPSPDGLAQAFTLGKDFINGEPCAMILGDNIFYGNGFTELLKNATADAQKGKATVFGYYVNDPERFGVVDFDQNGKAISIEEKPAQPKSNYAVTGLYFYPSGVSEKAAQVKPSARGELEITSLNEMYLNEDDLNVQLLGRGYAWLDTGTMHSLVDASNFVKMTEERQGVSISAPEEIAYIHHWIDKDELLAAAKHYGKSPYGQHLKSVAEGKLRY
complement(1765277..1766314)       PHAGE_Synech_ACG_2014f_NC_026927: long tail fiber distal subunit; LCRIS_01736; phage(gi100279)     1.61e-52            LactobacilluscrispatusST1MKVIVTGGAGFIGSNFIFYMMKKHPDYEIICLDKLTYAGNLSTLKSVLDKPNFKFVKLDICDREGVYKLFEEEKPDVVVNFAAESHVDRSIENPEIFLETNIIGTSVLMDACRKYGIKRFHQVSTDEVYGDLPLDRPDLFFHEDTPLHTSSPYSSSKASADLLVGAYGRTYNLPVTISRCSNNYGPYQFPEKLIPLMIQRALNNEKLPVYGDGENVRDWLYVEDHCKAIDLILENGKPGEIYNIGGHNEMHNIEIVKLICDYLDKPYSLIEHVTDRKGHDRRYAIDPDKIHSELGWLPETMFKDGIKKTIQWYLDNKEWWENIISGDYQNYYEEMYGNRKVLDKD
complement(1766402..1767574)       transcriptional regulator; LCRIS_01737                                               N/A                 LactobacilluscrispatusST1MTKYYTSGEFAEKAHVSIRTIRYYDQKNLLKPAARTKSGARRYTDQDFAKLQQILLLKYLGFSLNEIREMTIGAGDAQFLLGSLQIQKRLAEERFEEMKNVIAAIDSTSQALKSNRQVDWSQMLKLIHLTAMDQSLSMQYKNATNISARIRLHRDYSVNQEGWFPWLFSNLHLKPGMKILELGAGNGALWSQNIAKVSKNVTIVLSDISEGILADARKTIGDHPQFQYSVFNAQKIPFADNTFDLVIANHMLFYCDDIPKALQEVQRVLKPGATFTCSTYSQKHMHEITDLVQNYNANIVLSSTKLYERFGLDNGRQILKPYFKDISCHKYQDAIELSDSMPIISYILSCHGNQNSILLDHYQDFKQYVEKQVKDGFHITKDAGFFSCKK
complement(1767674..1767979)       hypothetical protein; LCRIS_01738                                                    N/A                 LactobacilluscrispatusST1MEVIPKKYFLRTAKKYKKKHYDLSKVNKVVSLIEKEDFNQLYTKHKLGVIHGTHPPLYHVHVDRAYNDDWLLFYFGDNNKIYLSALGNHNLIEHISKIFND
complement(1767979..1768248)       hypothetical protein; LCRIS_01739                                                    N/A                 LactobacilluscrispatusST1MSETANFNMKLPKSMKEEAQATFKSMGMDMATATRLFYTAVIQQQKLPFTPQADDGALQVIKEMHDEESNGRVYSSAEDFAKNWLKDLN
complement(1768573..1768968)       PHAGE_Bacill_phi105_NC_004167: hypothetical protein; LCRIS_01740; phage(gi22855041)     2.14e-08            LactobacilluscrispatusST1MKNKVLYPVIAKEYNDDGHYFVVTSPNVQGMIVEGDTLEEAIEEASFDIADWFEVKGKIEKVADPSKWHLEKDEKLVYVPVNLTNFYKKYGKTVRKNISVPEYLANWAKENKINVSRVASDALKALQEQRA
