gi|339327781|ref|NC_015727.1|  Cupriavidus necator N-1 plasmid BB1p, complete sequence. 1499175, gc%: 61.39%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(338500..338850)         PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; CNE_BB1p03340; phage(gi157166006)     2.05e-31            CupriavidusnecatorN1MDIKPIRTELDYDTAMDRIGQLWGAPVGSPEGDELEVLSILVERYEEEHYPIPPSDPVEAIKFRLDQQGLTTRDLEPFIGSSGRVSEVLNRKRKLSLSMVKRLHDGLRIPYESLLS
complement(338850..339152)         PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; CNE_BB1p03350; phage(gi157166007)     3.56e-13            CupriavidusnecatorN1MRIIARRTLREFWESDPAYADAISPLTEWYRHMEKVTYATPQDVKAELRTASILKGGRVVFNIAGNKYRLILAIDYERQIGWVRFVGTHAQYDKVDAESV
complement(339371..339670)         hypothetical protein; CNE_BB1p03360                                                  N/A                 CupriavidusnecatorN1MPALPAKHYAAELQRQLRSLLGHEQIITQAYGRHLLIKRLDDEEPTVVARLTELGRNRYGAAFRTHSGRWEPLPGAGSLDEMAEPVVTLLQPYLQPDNY
complement(339683..340099)         PROPHAGE_Pseudo_KT2440: transposase, putative; CNE_BB1p03370; phage(gi26991145)      3.90e-12            CupriavidusnecatorN1MIAALDVHTGQVLAECRDRRTQDDLVAFMERVATAYPGKQVHVVWDNLNTHCAQAVWQAFNARHDERFHFHFTPLHASWVNQIELWFARYTRRVLRHASHTSIAHLRERTEQFVRAHNQAARPFKWSFRGYPLQTGAS
complement(340096..340974)         PROPHAGE_Pseudo_KT2440: transposase, putative; CNE_BB1p03380; phage(gi26991145)      2.54e-83            CupriavidusnecatorN1MARAADLSQSTVTRIWRAFGLQPHRQETFKLSSDPLFVEKVRDIVGLYLDPPLKAMVLCVDEKSQIQALDRTQPILPMAPGIPERRTYDYMRHGTTTLFAALDIATGKVIGELHRRHRSSEFLQFLRTIEANVPPKLDVHLVMDNYGTHKTASIKAWFARHPRFHVHFTPTSASWINQVERWFATITEQYIRRGSHRSTRQLEQAIRQYLDLNNANPTPFVWTKSADDILASIKRFCLRISDSGQRLGARWCSVSTRRPAFRPSNVSTRDGHPRRGDCVVVNLNIFVTAPRR
complement(341146..342405)         PROPHAGE_Escher_CFT073: transposase; CNE_BB1p03390; phage(gi26246249)                3.44e-133           CupriavidusnecatorN1MPRKTKTSQAADRELPAIPEDLIAHFVKGPMTAEAVQDASMAFKKALIERALGAELGHHLGYQPGAERPAGTANQRNGKSAKTVLTEDGPLRVDIPRDRDGSFDPILIPKHERRFTGFDDKIIAMYARGMTVREIQAFLAEQYGTEVSPEFISSVTDAVMDEVTAWQARPLEVMYPVVFFDALRVKMREDGVVRNKAVYLALGVLPDGTRDILGLWIETTEGAKFWMKVFNDLKTRGTQDILIAVTDGLKGMEQALAAVFPNTTLQTCIVHLIRNSLEYASWKERRAVAAALKPVYTAPTVEAALAELAAFEQGEWGKRYTPIAASWRRAWDQVIPFFTFPPAIRKIIYTTNAIESVNAQLRKIIKTRGHFPSDEAATKLLWLALRNITGKWGSSTHDWKAAMNQFAILYEERFTHPHR
complement(342426..342716)         PROPHAGE_Pseudo_KT2440: transposase, putative; CNE_BB1p03400; phage(gi26991145)      7.29e-05            CupriavidusnecatorN1MRGRPKAELILSEAEREQLKALTMRRKTAQALALRARIVLASAEGLDNKTVAAKQRVDVHTVSKWRSRFVADRLDGLLDAPRPGAPGPVRNFVFRA

#### region 2 ####
744512..744524                     attL                                                                                 N/A                 CAAGCCCGGCATC
complement(749246..750028)         PHAGE_Burkho_KS5_NC_015265: ISBmu23 transposase; CNE_BB1p07160; phage(gi327198044)     6.03e-118           CupriavidusnecatorN1MEDALYDSQALRQFVGVDLSQESAPDATTLLKFRRLLEKHKLTAAMFGEVKAVLSERGLLMREGTMVDATLIGAPSSTKNKSKSRDPEMHQTKKGNEWHFGMKTHVGADADSGLVHSLHTTAANESDIAHTHHLLHGEESQVHLDAGYTGVERRDEIKQAQGQGTIRADISWHVAAKRSKVEKMPEGRWKDLTKAVERKKAQIRARVEHPFHVVKNLFGHKKTRYKGLAKNTAQMFSLFGLANLVIAKKPLLAFQGSYPS
750119..750415                     PHAGE_Shigel_Sf6_NC_005344: gene 56 protein; CNE_BB1p07170; phage(gi41057344)        2.05e-12            CupriavidusnecatorN1MTRRRRQFDASFKLEVVRMVRDQGLSVSEVCRSMELGETAVRRWMAQYDAECAGGPGVGKPLTAEQQRIRQLEAENRQLREDNALLKKASAFFARELK
750412..750999                     PROPHAGE_Escher_CFT073: transposase insF; CNE_BB1p07180; phage(gi26249410)           4.88e-46            CupriavidusnecatorN1MSYRVVAHLQQEAVSVSNACRVLQVSRSGYYAHRRAKPSMKTLQEQTHVKAAFAASGASYGSRRVMHAVREQGVRLGRYRIRRLMREAGLRATWKRKFVSTTDSKHTLPVAENVLDRQFDVAEPNRAWTSDITYIRTAQGWLYLAVVLDLYSRKVVGWSMAPTMPADLVMSALSMALQQRRPAPGLVLHSDRGSQ
complement(751043..752314)         PROPHAGE_Escher_CFT073: transposase; CNE_BB1p07190; phage(gi26246249)                1.02e-147           CupriavidusnecatorN1MTETTSMTKKSKKSSAPKLFPDELIDQLLAQVQNKDAESILGESGLAGLLKKQLAERMLAAELTHHLASEAKQGKSGNHRNGSSAKTVITPNGELELDIPRDRQATFEPQLVAKYQRRLSGFDDHVISMYARGMSVREIQGHLQELYGLQVSPDLISTITDEVLAEVEQWQQRPLEAMYPIVYFDALRLKIRDEGTVRNKAVYLALGIRADGRKEVLGLWIEQTEGAKFWLKVFNELKNRGLEDILVAVVDGLRGFPQAIEAVYPAAQIQTCIVHLIRNSLNLASWKDRKGLATALKPIYQAATADAAATALDAFAGSDWGRKFPTVADMWRRQWEQVIPFFAYPPEVRRIIYTTNAIESMHMQLRKIVKNRGHFPSDEAASKLLYLALRNIEKDWKMPPITWKQAANQFAILFGDRFTNALR
752341..752679                     PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; CNE_BB1p07200; phage(gi41057343)     1.27e-18            CupriavidusnecatorN1MTSTHKKSDRLSQYASAEYQTLLARHQIVCSMSRKGNCWDNAVTERFFLNLKMERVWQRQYANHAEARRDITQYIVGFYNPVRLHSTLGYLSPAAYEAKSIEKEPICLSEIT
753055..753330                     hypothetical protein; CNE_BB1p07210                                                  N/A                 CupriavidusnecatorN1MKECRMAQTTAQRQAAYRARRGTAGKDGNGERRLDMWVSTEADLALARLAHRYAVTKRQMLERLIARADDAIVRRLDPDSEQWDLYFNVPR
complement(753411..755048)         PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf2; CNE_BB1p07220; phage(gi26989833)     1.40e-117           CupriavidusnecatorN1MDVGCTIVFSMNEHDLSQLPPAAQAYIRELEARAAANAQHIAELNERIGLLEEQFRLAQSKRFAPSSEKLKDRVFDEAEQMAAAEPADDDEDEVLALPDTGLPEPDKPAGRKRGRKPLPAELPRQRIEYDLTEDQKICPCCRGALHRMGEEVSEQLHIEVKASVLQHVRFKYACRHCERNAERTPVVTAPMPAQPLPGSNASPAMLATVTTGKYVDGTPLYRMEDALGRAGIEVGRGTLANWIIRPAQLHYSRLYEALRRSLLSQPLIHGDETTVQVLKEEGKAAQSKSYMWVYRSAEDSEQPVVLFDYQPGRGQEYPQAFLAGYHGMLMTDGYKAWRTLEGVTHFGCVAHARRMFVDAQKGQKKPSARVLKALESFQALYQVETLAKAELPEGETRVDYTYRMRQQHSVPLLEALKAWLDQQAPQVLPESLLGKAIAYARNQWEYLSRYVTDGRAPVDNNAIERDIRPFCTARKAWLFADTVAGAKASAMIYSLMLTCRACDVEPYAYLLHVLTELPQRAPDADISDLLPFNFARRQTAPPHPA
complement(755074..755427)         PROPHAGE_Pseudo_KT2440: ISPpu13, transposase Orf1; CNE_BB1p07230; phage(gi26989832)     5.62e-24            CupriavidusnecatorN1MFRLDADLQVYLHRNAVDFRLGINGLVALVEQSMQHDPFARAVYAFHNRRRNRIKLLLWDRNGFWLLLKRLEEDRFVWPRRQQAVIELTTEQLHWLLDGIDVDAVQRHPSRKYQHTG
complement(755408..755896)         transposase IS3/IS911; CNE_BB1p07240                                                 N/A                 CupriavidusnecatorN1MDQSDLDCLPLRAINVGANGKRSFDKGDKRRLVEACLQPGVSVAGMAIKAGVNANQLRRWIEQHKAEQKDADGTMDAIESAPAAFVPVVEVHAAGPKAGAELPTVPEPLPVRTLQPPQPLPARLVARLPNGVSVELECSGQDATLVMATIEALGRCHVPARR
756443..756694                     hypothetical protein; CNE_BB1p07250                                                  N/A                 CupriavidusnecatorN1MARHLHFLARAFCVGAIIVIVAIVSRQVYLRSAAEADVADADAEPATMMLIRCETMHERLQNEQRSLAVEAADARPRARCRES
757162..757392                     transposase; CNE_BB1p07260                                                           N/A                 CupriavidusnecatorN1MKTPSNPTFMRGADTFTESLFTIRRLDDFVPKSHPLRSIRAMANQALVKMDRLFAHGDHRRQPGQPGRLARHQRRT
757331..757621                     PROPHAGE_Brucel_1330: transposase, putative; CNE_BB1p07270; phage(gi23502708)        1.27e-14            CupriavidusnecatorN1MTIDGSPANLAALHDINAEREAPTVIRRSKYLNNIVEQEHRAIKRLTRPMLGFKDFRCARILLGGIELMHMIAKGQMKCPDGSATSAAEQFYSLAA
760125..760137                     attR                                                                                 N/A                 CAAGCCCGGCATC

#### region 3 ####
773616..773679                     attL                                                                                 N/A                 TGGCCGGCTACTGACGTTGCCGTTTCGCTATCTCTGGATCGATAAGGCACGATAACCGGGCCTT
784938..786470                     PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; CNE_BB1p07570; phage(gi557307612)     2.57e-13            CupriavidusnecatorN1MKPHLQTTVLTLLAAGKSQREIERVTGVDRKTIRRLAQRQAEVNSPTPATGIGAQIPPPRPPANRPSSCEPYREWIEAQLRLRRNYTAIYQDLVDQFGFTGAYNSVKRFAGRLVQREPEQFDRLEFAPGEEAQVDYGEGALTRVPGSDRYRRPRLFVMTLRYSRRSFRRVVWNSSQQTWAQLHEQAWRYLGGATRYVVLDNLKEGVIKPDLYEPELNALYRAVLAHYGVVADPARVRDPNRKGSVESAIQHTQSTALKGRRFESIEQQNDFLEHWETRWAAQRIHGSACRQVQAMFEEERAHLLPLPLTGFAYFTEYERTVDDATCVRIDHSSYAARPAPIGSRVLVRLFEHHLELRDRATLALLRTHPRAQRRGSVLLPPEERPYNPSRETRSILAQAQQIGPATLALCQQWFEHDGRVGHRRLRGVVGLARRYPRRIVEQACERALRDGVRHYPSIQALAEQLLQQALAALEAPVQGELDLTQHHHLIRDGDAYADLFALGAQASADL
786491..787288                     PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; CNE_BB1p07580; phage(gi557307613)     1.43e-34            CupriavidusnecatorN1MSMSMTEIERALRALRLSGISATLQTRVVQAQACQQPFLETFSLILQDELDRRRSRLLERRYQQSGLDERAALADFDWRFNPKLPRAACFELHTLKFIAEGHNALIVGKPGTGKSHIAKAVAYQATLAGHAVRYLEADSAFVQYALGSPAEQRQHLRALLEADLLVLDDLFLARRIGEGAGELLQALVHQRYKLKRSIMVTSNRVVQDWGKYLGDATMAATILDRLMHRAHLLEFEGRSYRLKEAANRLALSPLGTPAPAADQPS
complement(787368..788252)         PROPHAGE_Xantho_33913: ISxac3 transposase; CNE_BB1p07590; phage(gi21231086)          1.34e-72            CupriavidusnecatorN1MSYRVVAHLQQEAVSVSNACRVLQVSRSGYYAHRRAKPSMKTLQEQTHVKAAFAASGASYGSRRVMHAVREQGVRLGRYRIRRLMREAGLRATWKRKFVSTTDSKHTLPVAENVLNRQFDVAEPNRAWTSDITYVRTAQGWLYLAVVLDLYSRKVVGWSMAPTMPADLVMSALSMALQQRRPAPGLVLHSDRGSQYASAEYQALLARHQIVCSMSRKGNCWDNAVTERFFLNLKMERVWQRQYANHAEARRDITQYIVGFYNPVRLHSTLGYLSPAAYEAKSTEKEPICLSEIT
complement(788249..788545)         PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; CNE_BB1p07600; phage(gi24373865)     4.16e-11            CupriavidusnecatorN1MTRRRRQFDASFKLEVVRMVRDQGLSVSEVCRSMELGETAVRRWMAQYDAECAGGPGVGKPLTAEQQRIRQLEAENRQLREDNALLKKASAFFARELK
788659..788886                     hypothetical protein; CNE_BB1p07610                                                  N/A                 CupriavidusnecatorN1MDILKELRVVFPGAQAWKAGYEALLARLLAEESHAPDEARKSGQTDPGLTGCPYADEVLLPALRTLGRFVDQESL
788977..789288                     PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; CNE_BB1p07620; phage(gi100019)     1.51e-08            CupriavidusnecatorN1MKDRHHDDSMAEMFREDPAFALETLNAILEDGDQAELMITLRQLTKAFGGVQAVAEQAHLNPTQLYRTLSPTGNPVLSNLSAILKAMGMRLAVRPAHGESAHT
complement(789418..789660)         hypothetical protein; CNE_BB1p07630                                                  N/A                 CupriavidusnecatorN1MPKTIAPLPRGHYWATPHAPFPLDGPNGHAEVFPGAHCVSDGKWVAFYKHGEEVWACNAMYAAAHFDFAPAFSVHAPTED
complement(790696..791349)         hypothetical protein; CNE_BB1p07640                                                  N/A                 CupriavidusnecatorN1MRETPDLIESLVADAKPVRRLHRPLVRVVCWLLLAALLLALVMLVNGVRPDLALKLQQPVFVTSVAAAIGTGILAAAAAFIASVPGRSRRWLWMPLPSLAVWMGTIGYGCLTNWVEIGPEGMSPGETARCFATLVVVSTPLAIALTAMLRYVARLSPAPVAMCAGLAVAAIAATSLLLIHPLDASAMVLLWNLGVALLFVGAGSLFGHRPFARMAQH
complement(791346..792041)         PHAGE_Sinorh_phiM9_NC_028676: DNA-directed RNA polymerase specialized sigma subunit; CNE_BB1p07650; phage(gi966199376)     2.50e-07            CupriavidusnecatorN1MKQNLGMSSQADRSQRPGHHAGGKPGLVDATHDAAGPSPLSEPACRPDGKPDWSAMMARAQAGDRAAYRRLLEGITPYIRALAVRQVHNHGDIEDTVQDVLLTIHAVRHTYDPARPFGPWLVAIARRRIIDSLRRRARTSARETPLDTEPETISDPGANLQEMALDARAVRDAVDCLPAGQREALRMLKLEEMSLKEAAVASGMSVGALKVATHRALKTLRKLFESQGSKP
799828..799891                     attR                                                                                 N/A                 TGGCCGGCTACTGACGTTGCCGTTTCGCTATCTCTGGATCGATAAGGCACGATAACCGGGCCTT
