gi|340780744|ref|NC_015850.1|  Acidithiobacillus caldus SM-1 chromosome, complete genome. 2932225, gc%: 61.32%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(208459..209622)         PHAGE_Pseudo_PAJU2_NC_011373: putative integrase; Atc_0202; phage(gi209552450)       9.29e-42            AcidithiobacilluscaldusSM1MASVFQSGKFWRAQVRRRGYPSLSATFDTKREALQWAAQVEARLETQTPAQVYKKVEVRELTLKAAFERYTREILPSKAPRTSRREHSLIQWWSRSLWQAVPLPNLDGPQVAQAIRAMEKENRSANTIRLMLAVLSHLYTIARKEWGYVDLINPVELVRKPRLPEGRDRRFVGNEEERLLEACASKNPELADFVIVALETAMRQGEVFTLTWDRISFTDHTIKLPPELTKTRKGRMVPLSERAEEALKRQNARCNGHGNRVWTYATQDGVRASFFKAVKVAGLEDFHFHDLRHEATSRFFERGLNAAVVQGITGHKTAQMLARYTHLSGKSLVEAVRGADPAVGVFSVRRPSPSTAQPQRFCTRCGAALAPEHRFCGGCGQPISVHK
209893..211416                     PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; Atc_0203; phage(gi557307612)     1.68e-23            AcidithiobacilluscaldusSM1MFTIRQILVRMRQGDTDRSIARAGLMGRKKLGVLRRQATRLGWLDSHTPLPEDGELATVFQRRSESQPAQCQSSLRDHEQRIAEWVAQGIQATTIHAALVRQYGFPGSYSAVKRLVRRIRQAVPPKVTSRLVFAPGEAAQVDFGAGPLLADPRTGELRKTWFFVMTLCWSRHQYAEFVWDQSVTTWLACHRHAFSWFGGVPTRIIIDNAKCAITKACINDPAVQRAYGEYAEGYGFRIDPCPPRDPQKKGIVEAGVKYIKRSFLPLREFRDRDDAQQQLREWVLGEAGNRVHGTTRQVPLTQFAQVERALLQPLPTNPPEICTWARPKVGQDGHVQFARCHYSVPFRFVGQSLWLRATDTTVRIYAEHELVATHPRLFQAGSFATVLDHLPPEAEAWQRQDLQWCLEMARGIGPHCHGVVHQLFADRQLANLRPVQNLLRLRLKYSPERLEAACARALHFGNARYQSVASILKHGTDQEPLPQQDLASDSTYTRGGRFLRDSKTLFH
211425..212210                     PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; Atc_0204; phage(gi557307613)     3.34e-39            AcidithiobacilluscaldusSM1MQTHELQSSLRALRLSGILESLEARNRQAIDGQLAYTEFLALLLQDEIARRDQKRFDTLLRQAQFRNHKTLEDFAFDRLPSLNRSLVHDLATGRYLREKAPVLIVGPCGTGKSHLAQALGHCAIRQGVDVRFMSQSALAGALHAARATGTYDRVFRQLAKVSLLIIDDFGLKPLRPPHDEDIHDLIGARYEQATTMVTSNLDFSEWGDVFPANRMLGVATIDRLRHGAYRLILEGESYRAPRPLPEVPKKPVAKGAKIAQS
complement(212841..214916)         O-antigen polymerase; Atc_0205                                                       N/A                 AcidithiobacilluscaldusSM1MKTKPKISATRALWLSLLPLLGYISSWYYNGQTIPLLALSSVLMLAWGGTVLWPRLQAGLPWSRGFLPVFMLLWLFWYWLTLFWSHVPYSSWFYFWTLGAVPLGFLFWVLQSEGDISAVWPWFWRGIVVTTWVLVGIAFWEYFDGVATGQALGNLRVQGPLLDTNSFAAWMNLLWFVLLGRFFYLDGQRDGARQALRRIDGTVLFYLVTLTLTTFAFWMTYSRGGALAWLCTFLVALIAFRKTPGFGRKLALVLAIEVAAYAIFGYLHHYDMLGHLAPGYISSSIETVSRGLMWIATWHIFLSHPYLGTGLGSYFLFYPAYRLPGELASAGTYAHNDYIEFLAEGGLINLGFLLAFAGTLFYALYRLIVRPARLGISEENRYWALGLVLGVFAITGHALGNFIFYNLPLSILGGIFLAQAWRLYQQPKDTAPLLPRLGIRHPGVIQLSMALLFVLAGWFLALDAAVYGLFSANAWLDGLIPNANARAVFLMKAARFLEAARPQATQPWVYTGNAYLNLVAQEPSMPTAQKKVLLEAALHQYRQSLVGIPRQAGVYNAIGSLYLNYGSSVLGLNPAAARDDAMLAWRKGLALTPESVNLRSEIATQAFFNRGDVAGGIAFLQAGLKRPLFPEPRALLEWVIARSQWLLAHDPKAAEKTLIASLEANPDFGPTLELLREIVHAEKTTATPAKS
complement(215025..216470)         Mannose-1-phosphate guanylyltransferase (GDP); Atc_0206                              N/A                 AcidithiobacilluscaldusSM1MNTFIPVILSGGAGTRLWPLSRQSHPKPFLTLPDGENLLQKSLRRAAAIPDVQEILTVTNRDYYFQTRDAYDAVDSREGHRQLRYLLEPTGRNTAPAIAAAAWELQESFGPDTILLVLPADQLVQDLPAFLAAVEKARELAQAGYLVTFGITPGWPETGYGYIEAGEVLMAEGSVLGHRVRRFVEKPDLARAQSFLDAGGYSWNSGMFCLRAGIFLEELANHQPALSRALGQVLSHGRRQDDYLELPQSFAQLPDISVDYAVMEPTQRAAVVAGDFGWSDIGSWSAFGGLLEADAQGNQVVGEVVLEDAQGCIVHSSERLAALLGVEDLVIIDTPDALLVARKDRDQEVKKIVAELKRRGHESHALHRTVHRPWGTYTVLEEGPRFKIKRILVKPGAALSLQMHHHRSEHWIVVSGTAKIVNGDEERLIRTNESTYIPAGTPHRLINPGVIDLVMIEVQSGEYLGEDDIVRFEDRYGRTPA
complement(216467..217498)         PHAGE_Synech_ACG_2014f_NC_026927: hypothetical protein; Atc_0207; phage(gi100223)     3.12e-125           AcidithiobacilluscaldusSM1MTKHALITGITGQDGAYLAQLLLGKGYTVYGLIARRGTDTTGRLHELGIADQVRLLDGDLIDLSSMIRAMEKSQATEVYNLGAQSFVATSWDQPILTAEVTGTSVVKMLEAIRIVNPKARFYQASTSEMFGQIQEPLQSERTPFHPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGTEFVTRKITLALARIRHGLQEVLELGNLDAKRDWGFAGDYVRAMWLMLQQEQPEDYVIATGETWTVRTFVQKAAICAGFDLEWQGKDEKTQGIDRKSGKVVVRVNPAFYRPAEVDILIGNPAKAREKLGWEREVGFDALVQMMMEADLRRVAGGLAQ
complement(217495..218403)         PHAGE_Entero_phi92_NC_023693: Phi92_gp067; Atc_0208; phage(gi726647000)              6.02e-25            AcidithiobacilluscaldusSM1MGGISGGRMKLLLTGANGFVGRYVQAALPCVPLPDGLDLRDRAALTTAVAAMRPDAVLHLAAQSFVPAAFENPRETFDINFTGTLNLLEALQAAEFRGRMLFVGSGDAYGQVSEATLPVCEDHPLRPRNPYAMSKVAAEALCYQWSQTSGFEIVMVRPFNHIGPDQSPRFAIADFARQVMEIRLGRRAPVLQVGDIDITRDFTDVRDVVRAYGLLLERGRNGEIYNVCSGREYCIRDLLRRLLTLAGVEATIEQDPARLRRAEQRRMVASFAALQRDTGWQPAIPMEQSLQDLLNDWEKPLQ
complement(218376..219527)         PHAGE_Synech_S_CAM7_NC_031927: hypothetical protein; Atc_0209; phage(gi100016)       3.77e-06            AcidithiobacilluscaldusSM1MRIAIVHDWLVVYAGAERVLEQMLVCYPDADLFSLVNFLPSDQRDFICNKPVTTSFIQRLPRARKKYRGYLPLMPLAIEQLDLSTYDLVLSSSHAVAKGVLTGPDQLHLCMCYSPIRYAWDLQHQYLREAGLERGVKGWVAKLILHYVRLWDVRTANGVDGFIAISRYIARRIRKVYRRDSTVIYPPVDVADFPLCRDKEDFYVTASRMVPYKKVDLIVEAFSAMPDKRLVVIGDGPDFAKVQAKAGPNVQLLGFAGAEVLRDHLQRARAFVFAAEEDFGIAPLEAQACGTPVIAFGRGGALETIIPQPDAERAGSSPAPTGVFFREQSIAAIIAAVERFEAAGAAITPEACRENALRFAPERFRAEFTAFVEREWAAFRGGA
complement(219527..220123)         glycosyl transferase family protein; Atc_0210                                        N/A                 AcidithiobacilluscaldusSM1MASAGAEADLVQWLGTDPPPYFLFLATLEPRKNIGRLLAAYAALPDRLRKEHPLYLAGSFGWREAEFSDVLKRLVEIGEARILGFVPDPILPALFRRALALIYPSLYEGFGLPPVEAMAAGCSVLVSNVTAMPEVCGDAALYCDPVDVSSIRDGMLRLAEDTDLRNRLSQAGRARASLYSWDRTGAEILALMREVAKG
complement(220231..221445)         PHAGE_Ralsto_RSA1_NC_009382: transposase IRSO15-like; Atc_0211; phage(gi145708108)     5.89e-31            AcidithiobacilluscaldusSM1MVPEELFSLALGLVPPWLVDHVTFTVEEKRLDLHINFPKGSRFACSVCGEECPVHDTRDHTWRHMDFFQHEAYLHARVPRVKCQEHGVHQISVPWAREGSRFTLLFEALIMTLVREMPVLTAARMVGETDKLLWRVIDHYVPEARAAVDMANVHAVGVDETSSRHGHDYITLFVDLNARRLLFATPGKDAKTFEKFSADLQAHGGSAEAITDVSMDLSPAFQKGAAEHLPNAEITFDRFHLMKLVNEAVDDVRKGEVLTQPNLKKTRWLWLKNDCNLKMKQKEKLQELLKDQNLKTAQAYQFRLTFQDIFTIKNRHQGATLLKAWLENARTSDLPPIVRVAYTIMNHWDGVLRWFESQITNGILEGFNSLIQSAKAKARGYRTHKNFINMAYLILGKLDLRLPT
complement(221449..221982)         hypothetical protein; Atc_0212                                                       N/A                 AcidithiobacilluscaldusSM1MLKIAIESNSMRPPRSGIGRYTWEITHRWEQDQGVGLFYFYGTAWVTRWPDIMPPAIRSSSQGVMRWLKEHTPKGRELRHLLDNAVFHMHLRKNPVDVVFGPNYGAPKSRVPTVIAFHDLSHIRYPDTHPPARVAYLNRQLPESVRQAAIILTDSALRQIEWVGGRMLWSGRALNRS
complement(222149..223144)         PHAGE_Burkho_KS5_NC_015265: ISBmu23 transposase; Atc_0213; phage(gi327198044)        8.21e-07            AcidithiobacilluscaldusSM1MPQDHPLRAIRAIVDRSLAEMDSHFSTMYSTFGRPSIPPEFLLRALLLQVFYSIRSERQLIEQLHYNLLFRWFVGLGMDEGVWVPTVFTKNRDRLLDHGTVQEFFRSVLEQAHSQELLSEEHFSVDGPLLEAWASQKSFQPKDPEDREGDGSDFRGQTRSNETHASITDPDARLYKKAPGEASRLAYLGHVLMDNRHGRIAAEQVTTADGTAKVEAAVQLVDDLDGNQRITLGADKGYDRHGFVQDLRYRNGAPHVARKRKGSAIDGRTTRHAGYAMSIHVRRRIESIFGWMKTGGGMRKTRLRGLDRVRLHFSLAATAYNLVRMARLGVV
223957..224253                     hypothetical protein; Atc_0214                                                       N/A                 AcidithiobacilluscaldusSM1MEQRYSRADWQRLIDEQGVSGLTQRAFCAQAGVAVATFGYWKRKLRADSAGLAEDPASARGGSLNDWLELAPEVSEPARGWHIELDLGNGVCLRLRQG
224256..224636                     PROPHAGE_Pseudo_KT2440: ISPpu15, transposase Orf1; Atc_0215; phage(gi26990788)       2.19e-22            AcidithiobacilluscaldusSM1MLVPGSAVLRVWLYTPPADLRKSFDGLSALVRQKLAEDPASGQLFVFINRRRTQLKVLYFEPGGYCLWSKRLEAGRFHVDGLGGDRRVLSWTELKLIIEGIDLSSLRRFKRFKKGGNRSLGRPEKV

#### region 2 ####
1303147..1304031                   PHAGE_Ralsto_RSK1_NC_022915: putative phage recombination protein; Atc_1291; phage(gi560186064)     1.42e-113           AcidithiobacilluscaldusSM1MNAVVQSKKSQSITTIPALEMSEQELISVLENSIYPGASRESIKMAISYCAAAKLDPLQKPVHIVPMWDTKAKRMRDVILPGIGLYRTQAARSGEYAGVSEPEFGEDVTETIGGVKVTYPKWCKATVKRRLPSGEIVEFSAKEFWKENYAVKGGQEKSIAPNAMWAKRPYGQLAKCAEAQALRKAFPELGAQPTAEEMQGSTIETSEVIDGQTGEIIQVQKSPARPALEPYPEEYFRQNLPKWKDLVESGKRSADDILAMIRSKATLTSEQEAAIRSLSHPDGSTEDFAEVGEE
1304035..1305552                   PHAGE_Ralsto_RSK1_NC_022915: putative phage-type endonuclease; Atc_1292; phage(gi560186063)     2.11e-51            AcidithiobacilluscaldusSM1MLRYHDVEQGSPDWLSLRLRHFTGSEAPAMMGVSPYLGRNELLRQKATGMVPEVDAATQVIFDAGHAAEAAIRPAAEQIVGEELFPGTCSRDVDGLPLLASLDGLTMDGSVVWENKLKNAETIAYIAEHGEPPLHHVWQLEHQLLVTGAEKALFTCGTDGEDFVRCWYESRPERREAILAGWKRFAEDLASYTPRPDEYEFIGVAPDRLPALHVAVSGRILASNIAEWRDRTLEILAGIPRDLHTDQDFANAEETIRWAKEALDRIAVVKDAVLAQMPDVEQMFRSLDDIGEALGRTVKDLDGLVKVRKDNIRLEMVQKAAESVRAHYDALALELGAYAPTMPSALLAELGASIKGTRTAKAAAAKLDSAVAQAKIAADKEANRLRTAQRLFADAAARVGVDLWPDGPTLAKTMDEDALLGVIARRVNAHRSQGSRPTAKASKTLTLDAICARIAPLGITKAGLAQLGFAPLPDGGYLEADFPKICAALVATLQSAAKDEVADAA
1305542..1305745                   PHAGE_Pseudo_Lu11_NC_017972: hypothetical protein; Atc_1293; phage(gi388684821)      1.17e-05            AcidithiobacilluscaldusSM1MPLEAKDSPCRGFCTTALGDDVCRSCGRTFEEVTGWIGFSEEQKQACWERLIREGWVDPDRNPIRGR
1305963..1306280                   PHAGE_Salmon_SPN9CC_NC_017985: integrase; Atc_1294; phage(gi389060492)               5.85e-25            AcidithiobacilluscaldusSM1MLYKRGKTWWVDFVDASGQRVRRSAGTTDKAAAQELHDQLKAEAWRQSRLKESPARTWDEAALRWLDEKAYKASLKDDMQQLEWLHSFLSGMKLPDQDCRASPCL
1306337..1307980                   PHAGE_Geobac_E3_NC_029073: transposase; Atc_1295; phage(gi985758491)                 5.25e-82            AcidithiobacilluscaldusSM1MSSKYAGSRITKASKAPKAKQPTFVLELPLLVNPHEDRVLAVRFEAGRQLYNAVLGEALRRLDLMKQSRAWQTARKLPKGNPGSREQKARAAEFSLISKTIGFTDYDLQAYATRCKNACWIGDHLDAHTTQKIGTRAFKAAQRYQFRTGGRPRFKPKWKTLASMEAKSNAAGLRWRDDHLEWNGLKLKAIYDQKDPHGVQAFALQNPVKYCRLVRRTLNGKARWFVQLVIAGYPKWKNKNPIRQGKVAIDIGPSTIAAVSETDAFLEQFCANVPDLQKTIRRIQRAMDRSKRGSNPGNYHEDGTLKKPAPGQRLQWVFTNGYLRLRARLKEMHRRLAAYRRTEHGKLANRVVALGSTVMAEKLSYKAFQRRFGKSVRDRAPGEFVGHLRRKAASAGGGVIEFPTRTTKLSQSCQCGAVVKKPLCQRWHDCPCGIRAQRDLYSAYLGLHVREDAGLWILDTESARVGWCAAESLLEKAVSGVVQAANGRRLPASFGISAPRSGARDRAALSRNGAESGEDSGCCNHIASAIVARAGKTPELSTGTPRL
1308012..1308785                   PHAGE_Burkho_phiE202_NC_009234: gp10, site-specific recombinase, phage integrase family; Atc_1296; phage(gi134288747)     4.26e-81            AcidithiobacilluscaldusSM1MCGILERKRKETSASTANHYLALIRAILRRAHKWGWLDSVPSFEPYPVKSERLRWLTQEEAARLLQELPQHLADMAEFSLLTGLRQSNVTGLEWAQVDMQRRCAWIHPDQAKARKPIPVSLNDQAIQVLRRQLGKHHRVVFTYKGQPVTQTNTKAWRKALKRAGIEDFTWHGLRHTWASWHVQAGTPLLVLQQMGGWASLDMVQRYAHLSADHVAQYAANVGVNGTKKTQAPLRLVSGTSQHIENMVGCEGIEPTTR
