gi|378715556|ref|NC_016906.1|  Gordonia polyisoprenivorans VH2 chromosome, complete genome. [asmbl_id: NC_016906].5669805, gc%: 67.02%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1456870..1456882                   attL                                                                                 N/A                 TCGCATCGAGTAG
complement(1459033..1459203)       PHAGE_Mycoba_Che9c: gp42; GPOL_c12630; phage(gi29566150)                             4e-06               MTDDDRALLDFADKQWRYAGNQADAIMAQFGISVTRYWQRVNRLLDTEEAPAYNPV
complement(1459693..1460544)       PROPHAGE_Escher_EDL933: putative transposase; GPOL_c12640; phage(gi15801124)         1e-58               MQIAPSTYYAHKQRGRISAAALAEAYAAHEVFRQFTKNRSVYGVRKMHHQMWRAGHPMGRDQVGRLMGICGISGAVRGSHRTVTTRRDDKAPRFPDHVARQWNIADRPDRWWVADFTYVWTLAGFVYVSFLVDVFSRRILGWRVMTSKHTPLVTSVVEQALFTRRRTVFNFTATGLVHHSDAGSQYTSLAFTAALREADITGSIGSVGDALDNALMESTIGLYKTELINTGRTWTDRAEVERETAAYVFWFNTDRLHSSLGYCSPIEYETRYRESVTSETEVA
1460683..1460889                   hypothetical protein; GPOL_c12650                                                    N/A                 MALRNSAFSRRNSRNSAPGSSAGDELAVETAGMSFSIQFRNVAGLMSSISPTCRRAASLAPPTSASRS
complement(1460995..1461147)       putative transposase; GPOL_c12660                                                    N/A                 MGAARKFDLETRERAVRMYHDRLAEVGGAKLAARRHVGEMLDINPATLRN
1461135..1461392                   PHAGE_Nocard_NBR1: putative lysin; GPOL_c12670; phage(gi372217620)                   4e-08               MLLPYQHSPGEITVSTRPRTVQIDAAAAAASSWLGKRLNPAKLSVENTCPDGVGKWVEYENAHVYWSPSTGAHAILGFPRKNGHG
complement(1461389..1462114)       PHAGE_Burkho_phiE125: ISBt3 transposase subunit protein; GPOL_c12680; phage(gi17975200)     7e-33               MARWKRSQRTYGSPRITADLHDEGVSVSENTVAKIMAEMGIEGISPRTFKVKTTVVDPTASFPPDRVGRVFDQGRLDAVWTSDITYLTCGEGDAYLCAIRDEHSRRVLGWSLADHMRTELVEAAVDAAVAARGGSVTGTILHSDRGSQFTSHAMAQACTRHELRRSMGETGICWDNAGAESLWSTVKHEYYKRHAFTTRANLTAGLDNYILFYNHDRRHSSLGMISPIDFEISSHASQQSS
1462721..1463005                   PHAGE_Nocard_NBR1: putative lysin; GPOL_c12690; phage(gi372217620)                   2e-09               MGYPVRDFTKLDGGGVQAFQHAVLYHKDGSDHGFYVGGQILNSYAQRGYEKSALGYPTSLEYPEDTGRAQDFEHRSLLWDPTGAIQVLDNHNKE
1463008..1463289                   hypothetical protein; GPOL_c12700                                                    N/A                 MATVKIAASQATWGDKVSQYSKAIVTGVGFASATVTDIVSAVGTHIPATELAWINGAIGAATLIATYLSRNTEILKELADDTEEVVHQIDPKP
1463286..1463582                   PHAGE_Mycoba_Che9d: gp38; GPOL_c12710; phage(gi29566445)                             3e-12               MSLLNPAAWNGVGIVSFLIVFVAFFVMALFRGWIVLRVHHREIMAQNTRELDAMKQRSDKDAESIAKFADAAAVSTAAAEVTQKMMQSMRQLAEERTE
1463579..1463785                   PHAGE_Rhodoc_REQ2: hypothetical protein; GPOL_c12720; phage(gi372449846)             5e-09               MKWWWQRDIEEARARADRAEREREAAERRNLEADRLREHAKEVEDDLHKELVRNGFAEALKDAFGGVS
1463785..1463943                   PHAGE_Rhodoc_REQ2: putative holin; GPOL_c12730; phage(gi372449847)                   3e-07               MWMKDAADIAPCVLAAEQLIFTALYTTRSPWWTTDPGRVYVAKSVVWTLVVL
1464141..1464389                   hypothetical protein; GPOL_c12740                                                    N/A                 MGEAMITWITVCGTGEHPGNPANMLNQAASLINVEHVDVEYPAAIAVFNPTGNVTGVSEATSRARGVQALVAAIRSTPTWWC
1464386..1464928                   PHAGE_Nocard_NBR1: hypothetical protein; GPOL_c12750; phage(gi372217646)             1e-12               MSGYSLGALVVGDFLAAQARGQCRDCEVLAVVNIANPARRAGQSYGLPSHGFGIDGQHAPWPTGVDVFEIANLVDGITSLPASSPWRQVADQIRTFSLGNPQVWFEHMVAQLDGMEVTQASANWWDPSFWQGYAEAPAWLRGYLFDGQHQAAYLQPRWYDQRGNRVPAVELVADVVASYA
1465573..1465917                   PHAGE_Mycoba_LeBron: gp33; GPOL_c12760; phage(gi304360982)                           3e-07               MAKVQTVQFIDDLDGSPVEAELVETVRWQWQGVDYEFDTAARNLAEIEQGRVPVSKLLNASRRIRRTASSVSRRRGGRKRAAAVREWARRQGYDVPDRGRLSNEIVAAFDEANR
complement(1466229..1467080)       PROPHAGE_Escher_EDL933: putative transposase; GPOL_c12770; phage(gi15801124)         1e-58               MQIAPSTYYAHKQRGRISAAALAEAYAAHEVFRQFTKNRSVYGVRKMHHQMWRAGHPMGRDQVGRLMGICGISGAVRGSHRTVTTRRDDKAPRFPDHVARQWNIADRPDRWWVADFTYVWTLAGFVYVSFLVDVFSRRILGWRVMTSKHTPLVTSVVEQALFTRRRTVFNFTATGLVHHSDAGSQYTSLAFTAALREADITGSIGSVGDALDNALMESTIGLYKTELINTGRTWTDRAEVERETAAYVFWFNTDRLHSSLGYCSPIEYETRYRESVTSETEVA
1467048..1467425                   hypothetical protein; GPOL_c12780                                                    N/A                 MGVVGGRGDLHSVLGEYPADRIDPEPVSVIVDVIDDQCSRRSISAAAKKADAVFKISLALRNSAFSRRNSRNSAPGSSAGDELAVETAGMSFSIQFRNVAGLMSSISPTCRRAASLAPPTSASRS
1467670..1468035                   PROPHAGE_Escher_CFT073: transposase; GPOL_c12790; phage(gi26246249)                  1e-13               MRHWLSIRAWDRFIPFLAFPPELRKVIYTTNSIESLNYQLRKVIKNRGHFPNDVAVRKLLWLAICDIEDKRAMQREKERGKPAGQRKAPGRLVEGQVVTNWKQALGQLALAYPDRIEPHLT
complement(1468204..1469703)       putative transposase; GPOL_c12800                                                    N/A                 MAFVRTVKTKSGATAVQIVHSNRGGSREIEHIGSAHTDAEVAALKAAAADRLAAGQQQLDLGLVSASGSGPLPITSSRMAVLLDAITSVYDELGFASIPNSDSVFRDLVVARIIEPTSKLDSLRVLAEAGVTPASYATVKRRLPIYAGASWRGELAKACAAQANLGPTTLCLYDVTTLYFETDKADGFREPGFSKERRLEPQITVGLLTDATGFPLMMEAFQGNKAETLTMMPTLTAFMTAHKLTDVTVVADAGMISAANMKAIEDAGLSFILGEKIPNVPYQIQKWHRNNPNSTPADGLTLTQPLPANSKTSYRRHRVVYYRYSADRARRSIRGINEQIAKAEKAVDGKIPVKRNRFVKLKGGDRTVNRDLETKARTLAGWKAYATNIDSPTPEFVIDSYHQLWRIEKSFRMSKSDLAARPIFHHLEDSIRAHLAVVFAALAITRVIETRTSWSIRKFVTTARRYRTITIQAGEQTITAAHPLPDDLRDAIIAIRSGH
complement(1469807..1470394)       PROPHAGE_Pseudo_KT2440: transposase, putative; GPOL_c12810; phage(gi26991145)        1e-31               MMLGDNDREVLESWTRSGSVQASAAKRARMLLLAADGVANRRIAELVDASPTTVIAWRERYLERGLAGLTDRARSGRPRRLDRDAIIVATLTPPPKSLGVTHWSTRLLAKKLKISDASVARAWRAYGIKPFKAESFRFSTDPELVGKVTDICGLYLNPPENAIVLCVDEKSQIQALDRTVPILPMQPGKGRTPLL
1472745..1472757                   attR                                                                                 N/A                 TCGCATCGAGTAG

#### region 2 ####
1564965..1565387                   PHAGE_Mycoba_Che9c: gp39; GPOL_c13680; phage(gi29566148)                             1e-11               MSYQQPPAYGFGQPAGGTFYVNVLGQEHGPLGITDLQHMALSGQLKSSTYIRAAEAPNPFPAGQIPGLFSDKSKLTAGLLQIFLGSFGVGRFYTGHVGIAIAQIAVTWLTCGIGAIWPLIDGIMMLVGKVTDSDGRPLAD
1565427..1565837                   hypothetical protein; GPOL_c13690                                                    N/A                 MTAHTDTRTPRLAASEIAAVVGVAGVGVACALSPAGIEHGPILCPFRLVTGLPCPGCGLTRSWVYGVHGDWAQSFAAHPFGLPMIAAILALAITAVICRVTRRRPPRLERLLWNPVAKVVVAAWLVFAVVRILLVI
complement(1565868..1567709)       PHAGE_Microm_12T: asparagine synthetase; GPOL_c13700; phage(gi472342589)             3e-18               MCGITGWVGFDHDLRREGHVIEAMTSTMALRGPDDVGTYLEPHVGLGHRRLAIIDLPLGHQPMTVQTPAGTLAIVYSGETYNFRELRTELRSLGHEFATDSDTEVVLRGYVQWGAEVADRLNGMYAFAIWDGRTEELTMVRDRLGIKPFYFSPTADGVVFGSEPKAILANPLIPHTVDLDGLRELFAMTKAPGWSLWRNISEVEPGTIVTVGRDGLRTRTYWSLPAHGHDDDLETSVATVRELLTDIVDRQLVADVPRCVLLSGGLDSSALTGLAAARLGSEGQRVHSYSVDFAEQEENFTPDEMRDTPDSPFVRDVAAHVGSMHRDVVLNPADLTDPEVRRAVIGARDIPAGLGDMDTSLYLLFRAIRSESTVALSGESADEVFGGYRWFFDENARAADTFPWLAFSSAMTRDRHAMLSGDLQRRLDVENYIADQYASALATIPVVDGESDDERRMRRFSHLHLTRFVRMLLDRKDRASMAVGLEVRVPFCDHRLVEYVYNTPWSMKTFDGREKSLLRHATSHVLPQSVIDRTKSPYPSTQDTKYTQTLQDQLTDMVGERDHEVFALVDRDAVSAMIAADAATCDTGLRNQMDRVLDLYHWIDMYSPELVLD
complement(1567833..1568174)       arsenate reductase ArsC; GPOL_c13710                                                 N/A                 MNATIYHNPRCTTSRKALDKLREAGIEPTVVKYLDEPYTRAQLETLFADAGLTAHQAARKRESLYKDLDLASASESEVLDAMAEHPILVERPFVVTDKGTRLARPLDTIDEIL
complement(1568185..1569360)       PHAGE_Lactob_Lj771: minor tail protein gp26-like protein; GPOL_c13720; phage(gi163932195)     9e-06               MTDRVSARTWAAVGALGLGVFTVTTTEIMPIGLLQPMAADLGVSDGSVGLVVTAVAFVAAIAAPTLSTTTRRVDRRLLLIAVMTVFTLGNALTAMAPGFATLIVVRVLIGGALGLLWTIVAPTTLLLVPPRYAVRATTITFSGVSIASVLGVPLGTLAGQQLGWRAAFWALAGLSALSLVALAVLLGPTRPAGGVALRRLPSMLRNRDLRLTVVITAVVITGAYAAYTYVTPLIVDGIGIDDDLVSAVLLVMGAAGVAGNFAAGALLTRLTSARAGLAAVIGVLAVALWLVAVTTTITPLALVALMVWAVGYAAIPIGLQTTVLRTAPAHREAATTVYSTAFNLAIGVGALVGAQAIDRAGVLAPIVVGALCATVALALTARLPGRARALE
complement(1569479..1570456)       PHAGE_Cronob_vB_CsaP_GAP52: putative ribose-phosphate pyrophosphokinase; GPOL_c13730; phage(gi414087562)     2e-21               MTWTTDNQKNLMLFAGRAHPELAQAVADELGIKLTPQTARNFANGELFVRFEESVRGSDAFVLQSCPAPLNEWVMEALIMIDALKRGSAKRISVILPFYPYARQDKKHRGREPISARLIADLMKTAGADRIITVDLHTDQIQGFFDGPVDHMHALGQLSEYVREKYGTDNIAIVSPDSGRVRVAEKWADALGGAPVAFIHKTRDPMVANQVVAHRVVGEVEGRTCVLIDDMIDTGGTIAGAVSKLKDAGAGDVVIATTHAVFSDPAAERLANCGATEVIATDTLPIPPEKHFEQLTVLSIAPLLAQTIREVFENGSVTSLFDGIA
complement(1570539..1572041)       PHAGE_Acanth_mimivirus: probable UDP-N-acetylglucosamine pyrophosphorylase; GPOL_c13740; phage(gi311978096)     2e-27               MTQTSPTTTAVIVLAAGAGTRMRSKTPKILHTIAGRSLLGHALHAAADLGAAHVIAVVGHERERVTAAVESTSQSLGIPVSVAVQDQPLGTGDAARAGLQALPDDFTGTVVVTAADVPLLNGPTLRALVETHSANGGAAVTVTGFHAADPTGYGRIVRDDDGGVHAIVEHKDASPEQLAITEVNAGVYAFDATALRTALGGLSTHNAQGEYYLTDVVEIARESGKSVHGFTVDDPMLVAGCNDRAQLAELAAELNRRIVRRHQLAGVSILDPATTWIDLDVTIAEDVRIEPGTQLHGATTIGEDAVIGPDCTLTDVAVGRGAQIIRTHGSSAAIGDNALVGPFAYLRPGTVLGVGGKIGTFVETKNAVIGAGSKIPHLTYVGDARIGDDSNIGASSVFVNYDGVNKHQTVIGSNCRTGSDNMFVAPVQIGDGAYTGAGTVVRDDVPPGALAVSAGAQRNIEDWVVRKRPDTAAAQAARAAAETPSAPTIDETTIDETRRP
1572253..1573008                   PHAGE_Tricho_2c: hypothetical protein TNAV2c_gp071; GPOL_c13750; phage(gi116326757)     3e-12               MSTQKTAIVTGSARGIGAAVAKRLAADGLAVAVLDLDEANCADTVNAITEAGGKAIAVGANVADEASVAAAVDKVVAELGAPTVVVNNAGVLRDNLLFKMSVDDWDTVLAVHLRGAFNVTKAAQKYMVDAGWGRIVNLSSTSALGNRGQANYSAAKAGMQGFTKTLAIELGKFGVTANAIAPGFIETDMTAATAARVGMDFEEFKKLSASQIPVNRTGLPEDIAHTASFFVSEGAGFVSGQVIYVAGGPKD
1573135..1573209                   tRNA                                                                                 N/A                 TCCCCCATGGTGTAATCGGCAACACTTCTGATTTTGGTTCAGGCATTCCAGGTTCGAGTCCTGGTGGGGGAGCCT
1573668..1573895                   PROPHAGE_Xantho_33913: IS1477 transposase; GPOL_c13770; phage(gi21230912)            6e-10               MPAATVYNWRRQYGGMDGDSAKELKELREQNSRLKRLLADAELEKDALREMPRENSALPNSECIQAFCELAGVDE
complement(1573848..1574399)       putative transposase; GPOL_c13780                                                    N/A                 MDPFNVVHLAAEKLILCRQRVQQDTCGHRGRRGDPLYGIRRTLLTRIGLLTDKQKTCRRTGLDAREEHVAVAITYAIYQDLIDAYDQSNKRDRKIAMFKLLKRIHTGLPAGLAEVAQLGRSLWARRAEILAYFDTGDSNGPVEAINGRLEHLRGIALGFRNLKHYILRSLIHSGQLAESLNAL
1574505..1574630                   putative transposase; GPOL_c13790                                                    N/A                 MWLAIIDQQAVRRGILTSVADLNAKIRQFITGWNNRKHPFV
complement(1575349..1578231)       PHAGE_Halovi_HF1: putative methyltransferase-endonuclease; GPOL_c13800; phage(gi32453891)     3e-07               MTAQSMLDNLISKLDYRDSAGYVDETIDPGARGAVWDDLREKCGVAAAYFKSAVPVVAFATADTRNDAVIAHRRLWNYGRVPILIATTPDEILAFSCSTAQTPQRPDAALLAEAKHGEEIDTILADFSRFSVESGRLARHRSKDLSTHNRVDNLLLRNLRTIRSRLIAAGVREDEIEPLLGRSIFVRYLEDRGILRSEDLRELGRPESLDLALAQGWNSLSSLFQTMSEHFNGDVFRQDILTRRLPHAAMSVLSDFFQGADPETGQAPLWRYDFAIIPPELISSIYEQLLAPKQKSHAAYYTPRRVVDLILDELAPSFTEPTPPTVLDPACGSGIFLTETFRRIVHHRKRQSSQAPTYSELSEVLVQSIFGIDKNSDAIGVTAFGLYLALLEHVDPRTIWREVRLPRLVGKNLIVSDAFESNSLDKRKFDIILGNPPWQSSLSSAARTFLKERKRLAPDKQIAVCFIWKASEMVRQGGFIGFILPAKTVLHNRSGPADRFRLQLFREMDVRTLIDLSPLRKELFGANSPAVAIVLGNDIERSRSHLLHVSPRRTPLAGIIDGIVIPQQNIQTIAMSWTRTDPSIWKPLLWGGLDDLNLVSHLRRTYEALSSLADSYGWHTGAGYQVMENGDQNDATHLHDLPILHTDALSTIEAPPETSLGVPPSVRVMHRPRERGIYLAPHVLMRKGFRSTPIAAFVPYDASFTDGLFALAGPRDHDRLLRAVAAVLNSSVAQYWYLMTASSWGVEREQLHLREWLSLPLPELRPSVVDSLTRTVEGMDEGSRREAINKVVEEQVYRLTPDERQLISDTLTMNLSELQTGPGALAYTAPDDESFAKYTAELNRRVNDLGIGSWIVQLTERTDGFAVVTCTNLEVAPSSQMTSAPVLRNLIRANGSLLDRVTSSAAIIEPQAIVLDNNSAHIIKPDRRVNWTLSASKVDTSELFDAILRSDGMITRDPRA
