gi|384422536|ref|NC_017269.1|  Vibrio cholerae LMA3984-4 chromosome chromosome II, complete 946986, gc%: 47.55%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
285779..285790                     attL                                                                                 N/A                 TGGATGTTCAAC
286623..288551                     PHAGE_Agroba_Atu_ph07_NC_042013: threonyl-tRNA synthetase; VCLMA_B0250; phage(gi100705)     1.63e-13            VibriocholeraeLMA39844MPIITLPDGSQRHFDNPVSTLEVAQSIGPGLAKATIAGRVNGVRVDACDLIEHDASLEIITTKDEVDGLEIVRHSCAHLLGHALKQLYPNAKMAIGPTIDSGFYYDIDLEQSLSQEDLEKIEARMVELAKTKYAVVKKKVSWQEARDTFESRGESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVPHMGFCQNFKLLNIAGAYWRGNSDNKMLQRIYGTAFHDKKALQAHLTRLEEAAKRDHRKIGKQLDLFHMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSENREYAIKPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNITDKQADYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGKDLGKFKLDDFIAHIQAEIASRKLNLEE
288876..289106                     PHAGE_Agroba_Atu_ph07_NC_042013: protector from prophage-induced early lysis; VCLMA_B0251; phage(gi100001)     4.79e-08            VibriocholeraeLMA39844MGDYQVKLRNLIRFLEEGNKVKVTIRFRGREMAHQDIGVDVLNRLKEDTDEFAVVESFPTKIEARQMIMVLAPKKK
289210..289404                     50S ribosomal protein L35; VCLMA_B0252                                               N/A                 VibriocholeraeLMA39844MPKMKNNKGAAKRFKKTAGGIKYKHATKRHILTKRTTKNKRQLRPNAILPKCELAAVARMLPYA
289446..289799                     50S ribosomal protein L20; VCLMA_B0253                                               N/A                 VibriocholeraeLMA39844MPRVKRGVQARARHKKVLKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRAKKRQFRQLWIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAVLVEKAKGAL
complement(289881..290843)         PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; VCLMA_B0254; phage(gi31415821)     6.26e-12            VibriocholeraeLMA39844MKSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLSPLSRL
291046..291076                     attL                                                                                 N/A                 GGTAAGAAGCTGTCTAGAAAGCGTTATGCAG
291170..293098                     PHAGE_Agroba_Atu_ph07_NC_042013: threonyl-tRNA synthetase; VCLMA_B0255; phage(gi100705)     1.63e-13            VibriocholeraeLMA39844MPIITLPDGSQRHFDNPVSTLEVAQSIGPGLAKATIAGRVNGVRVDACDLIEHDASLEIITTKDEVDGLEIVRHSCAHLLGHALKQLYPNAKMAIGPTIDSGFYYDIDLEQSLSQEDLEKIEARMVELAKTKYAVVKKKVSWQEARDTFESRGESYKMEILDENVARDDRPGLYHHEEYIDMCRGPHVPHMGFCQNFKLLNIAGAYWRGNSDNKMLQRIYGTAFHDKKALQAHLTRLEEAAKRDHRKIGKQLDLFHMQQEAPGMVFWHHNGWSIFRDLEIFIRQKLNEYGYQEVKGPLMMDRVLWERSGHWDKYADAMFTTSSENREYAIKPMNCPGHIQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGIMRVRGFTQDDAHIFCTEDQIQQEVTSCIKMVYDTYTTFGFQNIVVKLSTRPEKRVGSDEIWDKSEQALIDSLKAMDIPFEIQEGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFNLPTRLGATYVGESNERLIPVMIHRAILGSLERFIGILIEEYAGFFPTWLAPEQAVVVNITDKQADYAHEVAQKLQKCGIRAKADLRNEKIGFKIREHTLKRVPYMLVCGDQEMEAGEIAVRTRKGKDLGKFKLDDFIAHIQAEIASRKLNLEE
293423..293653                     PHAGE_Agroba_Atu_ph07_NC_042013: protector from prophage-induced early lysis; VCLMA_B0256; phage(gi100001)     4.79e-08            VibriocholeraeLMA39844MGDYQVKLRNLIRFLEEGNKVKVTIRFRGREMAHQDIGVDVLNRLKEDTDEFAVVESFPTKIEARQMIMVLAPKKK
293757..293951                     50S ribosomal protein L35; VCLMA_B0257                                               N/A                 VibriocholeraeLMA39844MPKMKNNKGAAKRFKKTAGGIKYKHATKRHILTKRTTKNKRQLRPNAILPKCELAAVARMLPYA
293993..294346                     50S ribosomal protein L20; VCLMA_B0258                                               N/A                 VibriocholeraeLMA39844MPRVKRGVQARARHKKVLKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRAKKRQFRQLWIARINAAARQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAVLVEKAKGAL
complement(294428..295390)         PHAGE_Bacill_phBC6A52_NC_004821: DNA integration/recombination/invertion protein; VCLMA_B0259; phage(gi31415821)     6.26e-12            VibriocholeraeLMA39844MKSQFLLSVREFMQTRYYAKKTIEAYLHWITRYIHFHNKKHPSLMGDKEVEEFLTYLAVQGKVATKTQSLALNSLSFLYKEILKTPLSLEIRFQRSQLERKLPVVLTRDEIRRLLEIVDPKHQLPIKLLYGSGLRLMECMRLRVQDIDFDYGAIRIWQGKGGKNRTVTLAKELYPHLKEQIALAKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKTVTCHTLRHSFATHLLEVGADIRTVQEQLGHTDVKTTQIYTHVLDRGASGVLSPLSRL
295593..295623                     attR                                                                                 N/A                 GGTAAGAAGCTGTCTAGAAAGCGTTATGCAG
310152..310163                     attR                                                                                 N/A                 TGGATGTTCAAC

#### region 2 ####
774983..776104                     PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; VCLMA_B0705; phage(gi371496158)      8.89e-33            VibriocholeraeLMA39844MASVTLKNVCKAYGDVLISKNVDLEIQEGEFVVFVGPSGCGKSTLLRCIAGLEDITSGDLYIGEQRMNDVEPSKRGVGMVFQSYALYPHLNLYDNMSFGLKLSKANKSEIKKRVDHAAEILQLSHLLDRQPKALSGGQRQRVAIGRTLVSQPNVFLLDEPLSNLDAALRVQMRSEITKLQRKLGCTMIYVTHDQVEAMTMADKIVVLDAGFVSQVGKPLELYHYPQNRFVAGFIGSPKMNFMSVFIEGVEKDRVQVQLSNGTTFWIPVDGTTVTRGERMSLGIRPEHLVEAEHGDAKIEGKVMIVEKLGNETQVYMNLKGSDSDVIYRQPDTLDVETGDTLTIGIPAHRCHLFHSDGRACRRLHQEKGVDLPA
776327..776848                     PHAGE_Bacill_SPbeta_NC_001884: hypothetical protein; VCLMA_B0706; phage(gi9630137)     2.45e-11            VibriocholeraeLMA39844MNSQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVEDAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKYLNRSE
776853..777098                     Rho-specific inhibitor of transcription termination (YaeO); VCLMA_B0707              N/A                 VibriocholeraeLMA39844MVSCSQYDYIELACLFHLPVKLTMKSGEVYYGVAADTQRNSQKQECIALRGEEETWLLETDQLSSMEALSEQPHFSVIHFK
complement(777236..777844)         PHAGE_Cyanop_P_TIM40_NC_028663: hypothetical protein; VCLMA_B0708; phage(gi966198291)     1.39e-05            VibriocholeraeLMA39844MALDGLMDAIADRGWYVWDDFLNPQEVQALRECIPERWKRAKIGRNEEIQRAADIRSDKIQWLDLSMGQPVQDYLERMEQIRCEVNRHFFLGLFEYEAHFAKYEAGDFYLKHLDSFRGNENRKLTTVFYLNENWTPADGGELKIYDLQDNWIETLAPVAGRLVVFLSERFPHEVLEAHADRVSIAGWFRTNGVSGNKLDIAN
778060..778380                     PHAGE_Rhodov_RS1_NC_020866: hypothetical protein; VCLMA_B0709; phage(gi472342875)     4.42e-19            VibriocholeraeLMA39844MIVTTTPNIEGKRIVRYCGVIAGEAILGANIFKDLFAGIRDIVGGRSGTYERELEKARAIALEELQQHAVALGANAVVGIDLDYETFGKANGMLMVSVSGTAVVVE
complement(778547..779221)         PHAGE_Altero_vB_AmaP_AD45_P1_NC_021532: hypothetical protein; VCLMA_B0710; phage(gi514051613)     5.31e-06            VibriocholeraeLMA39844MKDENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSDLWLEENKPESRNIQMLMIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWAKNNIGIEEVNS
complement(779799..780077)         Peptidyl-prolyl cis-trans isomerase ppiC; VCLMA_B0711                                N/A                 VibriocholeraeLMA39844MARTAAALHILVKHKEQADDILAQLKKGAKFHVLAKKYSTCPSGKKGGDLGEFRQGQMVPAFDKACFQGEVLTPQLVKTKFGWHVVKVLYRT
780252..781172                     Chemotaxis protein CheV; VCLMA_B0712                                                 N/A                 VibriocholeraeLMA39844MAKVVSKANQSQGMLMFTLSAQQQLFAIGTLKVREIVTYQPMTQIPYSHHHVIGTVTIRNLTVPVIDMAAAIGFRPIQPSEYQKCYLIVTDCLRTVVAFMVRTIEKIIECDWRQIESSPETAGHDVFVTGITRFQNKIVQLLDVELLLSKIYPQYESTKVPMLTDIERERLKPLNILLVDDSSIARKQLSDALDSINIPYHICKNGSEALDLMRDMARDHRAIDILVSDIEMPGLDGYELAFEMQNDPQLNHAYCILHTSLSSEICVDRAHQVGAHEALEKFNATELVEAMLRGAKKLETQRLQKS
complement(781246..781770)         MarR family transcriptional regulator; VCLMA_B0713                                   N/A                 VibriocholeraeLMA39844MDSVQKSVIEWANELPELNTLPMSVLHRLQRLARRIELKMEAFYQQAGLTAGEFEVLMTLRGVGHPYCLNPSDLQVRLLLSSGAMTNRLTRLERKGLVERNLSRYDRRNVEVTLTEAERQRIELWLPEYCDLQSSLLAKFSEVEQETLSTQLQEWLSHHEQLWCIPDLLNSRQR
781942..782958                     PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; VCLMA_B0714; phage(gi100150)     2.17e-18            VibriocholeraeLMA39844MTTEDFKKSTANLKKVVPLMMKHHVAATPVNYALWYTYVDQAIPQLNAEMDSVLKNFGLCPPASGEHLYQQYIATKAETNINQLRANVEVLLGEISSSMSDTLSDTSSFANVIDKSFKDLERVEQDNLSIEEVMTVIRRLVSDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQKDALFDSLSGLYNRRAFDGDMFTLIHAGQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEEFALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITASFGVVEKIEGDSLESLIGRADGLLYEAKNLGRNRVMPL
