gi|384541581|ref|NC_017328.1|  Shigella flexneri 2002017 chromosome, complete genome. 4650856, gc%: 50.85%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
237463..237822                     PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; SFxv_0227; phage(gi41057343)     1.57e-84            Shigellaflexneri2002017MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
237816..238871                     PHAGE_Entero_IME10_NC_019501: terminase large subunit; SFxv_0228; phage(gi422934280)     0.0                 Shigellaflexneri2002017MLTTSPFFPNLVDHLLVKHHTADGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKEADTIYVSRVWKAKEKTAVQAWGAVKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELRDMMLDGRFKVFNTCEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRDIKKPKEKKIPAPIRPIARRT
238872..241037                     PHAGE_Entero_IME10_NC_019501: portal protein; SFxv_0229; phage(gi422934281)          0.0                 Shigellaflexneri2002017MADENRLNSILCKFDADWMASDEARTEATNDLYFSRVSQWDDWLSNYTTLQYRGQFDVVRPEVRKLVAEMRRNPVDVLFRPKDGANPDAADVLMGMYRTDMRHNTAKIAVNVGVREQIESGVGAWRLVTQYEDNDPTSNNQVIRRLPIHEACSHVIWDANSKQMDKSDAKHCTVINALSRNGWKEFAEDYGIDPDTLPSFQNPNDTWLFPWVSNDVVYVAEYYEVEEEKEKVFIYRDPLTGEPVSYYQQDIKDVIDDLANRGFIKVAERKVKRRRVYKSIITCTQILKDREKIAGEHIPIVPVYGEWSFAGDKECYEGVVRLTKDGQRLRNMIMSFNADIVARSPKKKPTFFPEQIEGYEYMYGGNDDYPYYLQNRTDENGNDLPIGPISYMENPEVPQANAYMLEAATNAVKEVASLGVDAQAANGQVAFDTVNQLNMRADLETYVFQDNLATAMRRDGEIYASMVNDIYDVPRHVTLTLEDGSEKDVQLYAQVVDYQSGNVVTLNDIRGRYECYTDVGPSFQSMKEQNRAEIQELLTKVPQGTPEFQMLMLQYFTLLDGKGVEMMREYANKQLVMMGLKKPETPEEMEMVQQAQQQPQQPSAEQIQAQGILLQGQAELLKAENQQAQIQVEAAKVEAQNQLNAAKIAEIFNNMDLDKQAELREYLRLVGQFQQQRSKDARANAELLLKDADQTHSQRMDFANLMRQVQIPSGGVAETPQ
241051..241962                     PHAGE_Entero_IME10_NC_019501: scaffolding protein; SFxv_0230; phage(gi422934282)     0.0                 Shigellaflexneri2002017MDQTTDIQASEELTLPGNHAAASADGLVVDNANDSAGQEEGFEIVRKDDEKPKQDPATNAEFARRRIERKRQRELEQQMEAVKRGELPEHLRVNPELPKQPDPNDYLSEDALAKYDYDQSRALAAFQQANSEWQIKAMDARSQAVAEQGRKTQEFTQQSAQYVEAARKHYEAAEKLNIPDYQEKEDAFMQLVPPAVGADIMRLFPEKSAALMYHLGANPEKTRQLLAMDGQSALIELTRLSERLTLKPRAKPVSEAPLPDEPIQGHAVAANISAIEKQMEAAANKGDVETYRKLKAQLNKGIR
241962..243257                     PHAGE_Entero_IME10_NC_019501: coat protein; SFxv_0231; phage(gi422934283)            0.0                 Shigellaflexneri2002017MALNEGQLVTYALDEIIGTVQNLTPMASKVTKYPPPAESMQRSSNTVWMPVEQEAPTQTGWDLTGNATGILELSVKCNMGDPDNDFFELRADDLRDERSYRRRIQASAKKLANNIESAIAKQATEMGSLVVHDTRAIGPSTGLPGWDFVSDAERLMFSRELNRDMGISYFLNPDDYRKAGRNLVDGDIFGRVPEEAYRNGTIQRQIAGFDEILRSPKLPAVTKSTATGVTVSGAQKFKPQAYTLDTDGNKENVDNRVATVTVSSTTGFKRGDKISFIGVKFLSQMAKNVLTDDATFSITRVIDGTHIEITPKPIALDDASLTKEEKAYANVNTSLADTTPVNVLNVATTTANVFWADDSIRLLSQPIPVTHELFAGMKTSSFSIPGIGVNGIFATQGDINTLSGKCRIAVWYSACAVRPEAIGVGLPNQTA
243254..243532                     PHAGE_Salmon_SPN9CC_NC_017985: hypothetical protein; SFxv_0232; phage(gi389060541)     8.01e-06            Shigellaflexneri2002017MITRGSFGSRFYLETSMTHMIFRHGDMKKWKGVGYDFEIVKAEELQEYLDAGWFSHPDDLLKDVAEPEPEEKQRKKPGRKPKAAADEPDNEG
243510..244010                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; SFxv_0233; phage(gi422934284)     3.28e-122           Shigellaflexneri2002017MNLTTKGDLVLAALRKLGVASNATLTDVEPQSMEDGVNDLEMMMAEWLGGDASPGINVGYIFADADVAPDPGDEHGLSNNAINAVIFNLACRIAPDYALEASAKLITTARYGKERLVKLSAMDRAKAAKCKSGYPNRMPVGSGNQLAKWNGWNYFHRKEPCDNGSE
244010..245428                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; SFxv_0234; phage(gi422934285)     0.0                 Shigellaflexneri2002017MPIQQLPLMKGVGKDFRNADYIDYLPVNMLATPKEILNSSGYLRSFPGIAKRSDVNGVSRGVEYNMAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPTDSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISNPATGAPSVYIIDSGQVSPIASASIEKILRSYTADELADGVMESLRFDAHELLIIHLPRHVLVYDASSIANGPQWCVLKTGLYDDVYRAIDFVYEGNQITCGDKLESVTGKLQFDISSQYDKQQEHLLFTPLFKADNARVFDLEVESSTGVAQYADRLFLSATTDCINYGREQMIEQNEPFVYDKRVLWKRVGRIRKNVGFKLRVITKSPVTLSGAQIRIE
245428..246276                     PHAGE_Entero_UAB_Phi20_NC_031019: membrane-associated initiation of head vertex; SFxv_0235; phage(gi100034)     2.48e-46            Shigellaflexneri2002017MADSNLNVPVIIQATRLDTSVLPRNIFSQSYLLYVIAQGTDVGNVANKANEAGQGAYDAQVRNDEQDVILADHEQRISAAEATLVNHEERIRQAESTLQDHETRIAQNESDISSLDTRVQSLESQVSDHETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGSLAPFFDTVNNKMVVFNENKTLLFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNAATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGAAFTATTIKIIAEQ
246276..246731                     PHAGE_Entero_IME10_NC_019501: head assembly protein; SFxv_0236; phage(gi422934287)     2.95e-110           Shigellaflexneri2002017MITFKPTRNIDLIEAVGNHPDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYQEIQPLTLDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
247437..248768                     PHAGE_Entero_IME10_NC_019501: gp20; SFxv_0237; phage(gi422934289)                    0.0                 Shigellaflexneri2002017MATWQGTNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEEQRNSIGTLAAGARLASSSPEAMQSWLQNNAGELARVGVNPHDVAQMYQQNPRQFGEFVDHLGMNSLGPEKYFDLQDKMQGRQVTMRGQDLDSQTAARNQAITMRGQDIQANLGQQRINLDAETNRINNENKRLDRMLSAETNDLKRQEIQSRIAANNQQLQQKQQALNDGYKDGINTLTTSMFTLNDIVSSPSLKSITGLRGVIPNVPGSQAADTQARLDTFKSQAYLTAVQAMRGMGALSDAEGKKLDQAVGSLQNSQSEESFRRNAGVILNTLNQKRNEAVGKYVQQNGIKRVEAPQASIDYLKQHPELSIDFINRYGYLPSLGQ
248769..250499                     PHAGE_Entero_Sf101_NC_027398: transglycosylase; SFxv_0238; phage(gi849122275)        0.0                 Shigellaflexneri2002017MANYRDLLEQAGARYGVPEGLMTALGAKESSYNPAAVSSAGAVGLTQVMPGTWRDMGYTDEQMQNPEYQADAGARYLAKMYQQFGNWRDSLQAYHDGPGNVMKAKRGEYTPGPEGRGYVDDRFAQWAGDPVTDSTVEQRATSAKVHPQQDPNNPFAQLEVQSSEQVSASGVQSDPNNPFAQIEQQAASQQPPQPVSSVAPKPVQQQTVNQANNAPTREEPSLMQQAGDWLTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLDDVYRPVDRPTDPYAQAGESIGGYLVPGAGVAGNMVIGSLADAANQRGDFAENAAINAGLSIATHGLINGVTRGVRGASNIISGNKTSAQRATTAPTETSPFSGDAAAATNPAVHAAEARVAQGVPMTPATKNPEEVVRTVAAQKRPNLASSLDELDINPQAEVLESAERLNVDSLLPSHFSGNEQYKAVEQAIKSRAGSALQVQENEAIRQLAQGAGEIIDRVSGAKDALGMSDKFIDTVNGRMSALMKRSDQLYRNVEKAMPAGAKIDAPSTRSMLKQVAEDLGGMKNLDPIEKRVEVA
250625..250951                     PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; SFxv_0239; phage(gi157166066)     1.80e-72            Shigellaflexneri2002017MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
251166..251834                     PROPHAGE_Escher_CFT073: transposase IS629; SFxv_0241; phage(gi26250986)              3.15e-158           Shigellaflexneri2002017MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPEQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLQERLGHIPPAEAEKAYYASIGNDDLAA

#### region 2 ####
305713..305724                     attL                                                                                 N/A                 CATCCGGCAATA
307154..307657                     PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_0307; phage(gi557307573)        2.41e-110           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
307848..308951                     glutamate 5-kinase; SFxv_0308                                                        N/A                 Shigellaflexneri2002017MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRRNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR
308963..310216                     gamma-glutamyl phosphate reductase; SFxv_0309                                        N/A                 Shigellaflexneri2002017MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESAEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALTQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA
310331..310403                     tRNA                                                                                 N/A                 GCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCA
310361..310424                     attL                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAGTTAC
complement(310421..311581)         PHAGE_Entero_HK446_NC_019714: integrase; SFxv_0310; phage(gi428782218)               0.0                 Shigellaflexneri2002017MSIKLRGGTWHCDFVAPDGSRVRRSLETSDKRQAQELHDRLKAEAWRVKNLGESPKKLFKEACIRWLREKSDKKSIDDDKSIISFWMLHFREAILSDITTEKIMEAVDGMENRRHRLNWEMSRDRCLRLGNPVPEYKPKLASKGTKTRHLAILRAILNMAVEWGWLDRAPKISTPRVKNGRIRWLTEEESKRLFAEIAPHFFPVVMFAITTGLRRSNVTDLEWSQVDLDKKMAWMHPDETKAGNAIGVPLNETACQILRKQQGLHKRWVFVHTKPAYRSDGTKTAAVRKMRTDSNKAWKGALKRAGISNFRFHDLRHTWASWLVQSGVSLLALKEMGGWETLEMVQRYAHLSAGHLTEHASKIDAIISRNGTNTAQEENVVYLNAR
complement(311458..311805)         PHAGE_Entero_HK446_NC_019714: excisionase; SFxv_0310a; phage(gi428782219)            1.22e-81            Shigellaflexneri2002017MEEEIFTREEAASYLKVDKGTITQWIRSGRLQAAKINPDKPKSPYRICKSDCIAALKSVRHNSAVNAVDVQEVKACQSNYAVARGTAISSRQMDQELDALLKHRTKGKRKNFTIV
complement(311896..312267)         PHAGE_Entero_HK022_NC_002166: hypothetical protein; SFxv_0310b; phage(gi19343379)     9.54e-87            Shigellaflexneri2002017MAVFYWRQEMSDLAMKVLKWQSTGDVGISSATLASIACGLKKNIYGHHFGAPHDAADFRRCVALVEQIPEIRDSFDKVAKRVPAFKGILNEWDSLVDLLKSEMKIHGNKAPETYRRISELRKD
complement(312341..312520)         PHAGE_Entero_HK629_NC_019711: hypothetical protein; SFxv_0311; phage(gi428782043)     1.88e-36            Shigellaflexneri2002017MSCPKCGSGNIAKEKTMRGWSGDYVCCDCGYNDSKDAFGERGKNEFVKINKEREGNEKS
complement(312617..313291)         PHAGE_Entero_HK629_NC_019711: hypothetical protein; SFxv_0312; phage(gi428782044)     7.30e-47            Shigellaflexneri2002017MSTITREWLQQAINDYESVRDELPFGLDDYQGNILAALRIALASLEAEPIGAFHIAEQQVDGTSDYIKDGEWPIDNGIIEVYAAPPVPVVPAALPENDDEDGHDIDYLEPSEVYALGRTAGWNACRAAMLQGKSEQPQNAQQNIPENIPGGNSPVTPDGWISCSDRMPEDTKMLLAFSQGEIVAAYWNWVANPIDYKKYRAFTYLSGYILDDVTHWMPLPEPPL
complement(313288..313737)         PHAGE_Escher_RCS47_NC_042128: baseplate hub assembly protein; SFxv_0313; phage(gi100106)     3.63e-26            Shigellaflexneri2002017MVFSENESRDAAFIAAANPATVLALLDELERNQQYIKSRDQENEEIALTVGKLRVELEAAEALNKHLELAIRKADGCSEALRRKTEAAEKRIAELEAREVVLPQCYSMLHRVDFDEPYHTEMVYRQHQVLEALHNAGINVTEACKGEAS
complement(313857..314024)         PHAGE_Shigel_Sf6_NC_005344: gene 23 protein; SFxv_0314; phage(gi41057301)            8.97e-33            Shigellaflexneri2002017MRGLAYNPGILPAEMIIRQRVKPMPSREELLKRNSFPSVNQNKYLNAMWRKGGNQ
complement(314041..314355)         PHAGE_Entero_mEpX1_NC_019709: hypothetical protein; SFxv_0315; phage(gi428781904)     1.22e-68            Shigellaflexneri2002017MKKTPWEKWEVDFLREVAATMPVEVIAEKLERTEKAVMAKATRIGADIVSRLRGRRWTRAEVSLFGKFSAEEIAIATCRSIYSVRAMRYKLKKLDEERAGIRIN
complement(314367..314807)         PHAGE_Entero_HK140_NC_019710: hypothetical protein; SFxv_0316; phage(gi428781979)     9.37e-98            Shigellaflexneri2002017MDSDLEPEMIADTIEGMEGEFTDKIEQLLAIIKNEYGYAERLKDEAKSLNERAAVIQNKIDSIMAYIASSLEMVGKKKIRAGIHQVTIRKPSETVEIIDSSALPPEYVEFETTIKADKLAIKHQLKAGINIPGAQLKVGKPSLLIK
complement(314833..315735)         PHAGE_Entero_mEpX1_NC_019709: RecT family recombination protein; SFxv_0317; phage(gi428781906)     0.0                 Shigellaflexneri2002017MSNIVEFVKQQEQLFCGALTEQTVTWAKESQFAIQYFQKNDYLAKTALANPTSAQNAIINVAAIGITLNPASKLAYLVPRDGMVCLDISYMGLLHLAQSTGSIKWGQCKLVYSNDTYESNGLDSAPTHKYNAFGERGSIVGGYCTVKTADGDYLTEEMSLAEIKAVEATSKAKNGPWKTFWEEMARKTIVKRASKYWPKAQRLDNAIHLLNEDEGMHQEPVMPHKSEEDIREDERKRQQEIMDKAQLLCDEMAQAENMDDLKRYFAEAYRLTSGMKLQQNVQAIYIECKAKLEVASEQTV
complement(315732..316043)         PHAGE_Entero_mEpX1_NC_019709: hypothetical protein; SFxv_0318; phage(gi428781907)     4.27e-70            Shigellaflexneri2002017MMILTLNDKREISQIIASFTDDDYERINSEVDRLCKRCDPISEMLRSYKPDEHTKDAIDWLEDDDCNYQEKAAEWFWDAITERVKAEYAFAIFKRRHIFGEAA
complement(316021..316128)         PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; SFxv_0319; phage(gi100013)     8.71e-12            Shigellaflexneri2002017MSFTDNWSDEEFIRQMNKMLNQHKEQEKDDDSDSE
complement(316125..316400)         PHAGE_Entero_mEpX1_NC_019709: putative cIII protein; SFxv_0321; phage(gi428781908)     8.30e-62            Shigellaflexneri2002017MEIFFALQCEGFFICIPITLHSRRFRYAIKQKEHPMQQFAIAGAASVRPFNPILSVQHSRKNILTGADFKQPRMKSLLEKLWDILKQQGRP
complement(316980..317288)         PHAGE_Entero_UAB_Phi20_NC_031019: DCMP deaminase; SFxv_0322; phage(gi100074)         9.76e-42            Shigellaflexneri2002017MTVIVYGKSTFAGNAKTRRHERRRKLAIERDAICNIIDSIFGTDSEEPVQEAPRKRLILSEKAISLGNIRNQNTDECSGSICLPNVALYAAGYRKSKQLTAR
complement(317642..318337)         PHAGE_Stx2_II_NC_004914: CI protein; SFxv_0323; phage(gi32171122)                    2.11e-167           Shigellaflexneri2002017MDGFSTERNNKDMKMKWYELARSRMKELGITQEKLAEELGMTQGGIGHWLRGSRHPSLDEIGVVFKYLGIDNVSFNHDGTFSPVGEYSSAPVKKQYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDCAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNDSCSVVGKVIASQWPEETFS
318413..318628                     PHAGE_Entero_VT2_Sakai_NC_000902: similar to C2 of bacteriophage L; SFxv_0323a; phage(gi9633420)     1.00e-47            Shigellaflexneri2002017MSNLRKYRESLNISQTTLAKAVGCTQGAIGHWESGRRFPDLKTCRALVACLNKLGAKVSLDDVFPPEHKAA
318738..319034                     PHAGE_Entero_HK629_NC_019711: CII protein; SFxv_0324; phage(gi428782059)             4.03e-65            Shigellaflexneri2002017MEQTSYSKLSQRDVDRAETDLLINLSTLTQRGLAKMIGCHESKISRTDWRFIASVLCAFGMASDISPISRAFKYALDGLTNKKRPEATERSEQIQMEF
319067..319228                     PHAGE_Entero_HK446_NC_019714: hypothetical protein; SFxv_0325; phage(gi428782236)     1.92e-31            Shigellaflexneri2002017MTKRRKKYQEKEEIRHPDSPEGLVVAAANNRAFAERLVGVYRLAKAGVKHGRR
319215..320105                     PHAGE_Entero_IME10_NC_019501: gene O protein; SFxv_0326; phage(gi422934271)          0.0                 Shigellaflexneri2002017MGVVKLADYRHNPVQHQEASSMGYVSIHRQFMDSRLYKDSQAVHLWLHLILKANHESTVVNTDIGPITVDRGQMITGRPSLVRETFIPDNKVRSLLRTFESKGMLNICSMGKKFSLFTIVKYDDFQAKNCPTVVQRLSNANTSNGASLSGDCPTVVQRLSINNNINNISNTDVLESATADKKSDKKKPSVSCQDVVDAYHEILPEAPRIRALNDKRKNQIRTFWRKAGVITRQLDGHGFTMQDWRNYLSYVGENCRWMFEERPNHQRGTVWHKKGFDFLLNDNTYLKVREGEHDDR
320080..321531                     PHAGE_Entero_VT2_Sakai_NC_000902: similar to P protein of bacteriophage HK022; SFxv_0327; phage(gi9633423)     0.0                 Shigellaflexneri2002017MRVNTMTDNFYAPPHSIEAEQAVIGGLLLDDDSSERVQKVLAMLKPDSFYSRPHKILFEEITRMHREQKPVDGLTLFDELERKSLTVSVGGFAYIAEIAKNTPSAANIVAYAMQVRETAMERYAINRMTEATELLYSRNGMTATQKYEAIQAIFTQLTDHAKTGSRRGLRSFGEVMEDWVSDLEKRFDPSGEQRGMSTGIPSLDRMLSPKGLVKGSLFVIGARPKMGKTTLYSQMAINCAVHEKKPALMFSLEMPGDQILEKLVGQKSGVNPNIFYLPATNDADDGYQGDYDGDFNRAIETANRLSEIDLLYIDDTPGLSLAQIVSESRRIKREKGCVGMILVDYLTLMTAEKADRNDLAYGMITKGLKNLAKELDCVVVLLTQLNRALESRTNKRPLPSDSRDTGQIEQDCDYWVGIHREGAFDDSVPPGETELILRLNRHGNTGTVYCIQANGAIYDTDQQSAEMRRREREEPQSKKKGGF
321531..321629                     PHAGE_Entero_HK97_NC_002167: Gp56; SFxv_0327a; phage(gi9634202)                      7.57e-17            Shigellaflexneri2002017MTIYITELITGAIYTVALFYWIKNEGDPDGHR
321616..321828                     PHAGE_Entero_HK446_NC_019714: hypothetical protein; SFxv_0327b; phage(gi428782240)     4.74e-47            Shigellaflexneri2002017MDTVNGMCSDAPRAKKCKCGKSPTIFDMENGCQIYCANHAAVAAANYRSAVTEWNNLKSVREGSHEKTNL
321809..322249                     PHAGE_Entero_Sf101_NC_027398: NinB; SFxv_0328; phage(gi849122309)                    2.41e-104           Shigellaflexneri2002017MKKLTFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAALKQQDVVPNLAGNGFVVIGQSTSRMRVSEFAELLELIQAFGTERGVKWSDEARLALEWKARWGDRAA
322246..322419                     PHAGE_Entero_mEpX2_NC_019705: NinD protein; SFxv_0328a; phage(gi428765664)           3.11e-35            Shigellaflexneri2002017MMRCYRCGECKEDNRFRPNQPYWNRWCLRCERTPTGVLPLPQEKEDVWRDSDEVLLK
322386..322562                     PHAGE_Salmon_vB_SemP_Emek_NC_018275: NinE; SFxv_0328b; phage(gi399498848)            1.63e-26            Shigellaflexneri2002017MARQRRSITQIALDNLIFTPTKRTKSRKKPIPTESQVKTFDYVYGLLQAKWNRMRKTR
322559..322729                     PHAGE_Entero_mEp235_NC_019708: NinF protein; SFxv_0328c; phage(gi428781860)          1.76e-34            Shigellaflexneri2002017MIDPNRSYEQESVERALTCANCGQKLHVLEVHVCSDCCAELMSDPNSSMYEEEDDE
322722..323444                     PHAGE_Entero_HK633_NC_019719: DNA-binding protein; SFxv_0329; phage(gi428782577)     2.91e-175           Shigellaflexneri2002017MNELINGNAIKMTSIEIAELVGKRHDNVKRTIETLAKNGVIRLPQIEVSERINNLGFSVQYEHYVFEGEQGKRDSIVVVAQLSPEFTARLVDRWRELEETAVNIPKTLPEALRLAADLAEQKMQLENQLAIAAPKVEFADRVGEASGILIGNFAKVVGIGPNKLFAWMRDHKILIASGSRRNVPMQEYMDRGYFTVKETAVNTNHGIQISFTTKITGRGQQWLTRKLLDNGMLKVTGEAA
323444..323734                     PHAGE_Entero_mEpX1_NC_019709: hypothetical protein; SFxv_0330; phage(gi428781926)     8.13e-67            Shigellaflexneri2002017MANLRKEARGRECQVRIYGVCNGNPETTVLAHYRMAGICGTGMKPDDLIGAWACSDCHAEIDRRTHNLDNKDARLYHLEGVIRTQAILLKEGKIKP
323731..324093                     PHAGE_Entero_HK542_NC_019769: Holliday-junction resolvase; SFxv_0331; phage(gi428783393)     1.57e-81            Shigellaflexneri2002017MNEYQFALPYPPSVNTYWRRRGSQYYISDKGQKYRKDVQQIIRQLKLDIFTKSRLRIKVIADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELENV
324090..324278                     PHAGE_Entero_HK629_NC_019711: NinH protein; SFxv_0331a; phage(gi428782071)           2.32e-38            Shigellaflexneri2002017MNSTIQTIPELLIQTRGNQTEVARMLSCARGTVLKYNRDSKGERHVIVNGVLMVKQGKRGRR
324275..324793                     PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; SFxv_0332; phage(gi100037)     3.10e-126           Shigellaflexneri2002017MSIRELNLTKEQHDWLNGWLELWGAWVYSGRLEKRMSSVIAKFMESVEPGRVMTRPMCNDDDGMLISQVVDSVMYIDKKAFGILLSYYAHGSSKRAIASYYHATAKPRKMCGRGGEGWRKPSLATCRNEIDDILKASLFVLYQPMQNAFKMRKRVEKVKHIAVKSLDMQLSI
325292..325615                     PHAGE_Entero_IME10_NC_019501: holin; SFxv_0333; phage(gi422934276)                   3.76e-72            Shigellaflexneri2002017MKMPEKHDLLAAILAAKEQGIGAILAFAMAYLRGRYNGGAFTKTVIDATMCAIIAWFIRDLLDFAGLSSNLAYITSVFIGYIGTDSIGSLIKRFAAKKAGVEDGGNQ
325599..326075                     PHAGE_Entero_c_1_NC_019706: lysozyme; SFxv_0334; phage(gi428781798)                  1.30e-115           Shigellaflexneri2002017MVEINNQRKAFLDMLAWSEGTDNGRQKTRNHGYDVIVGGELFTDYSDHPRKLVTLNPKLKSTAAGRYQLLSRWWDAYRKQLGLKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSNIWASLPGAGYGQFEHKADSLIAKFKEAGGTVREIEV
326072..326509                     PHAGE_Entero_Sf101_NC_027398: Rz (i-spanin); SFxv_0335; phage(gi849122322)           3.37e-99            Shigellaflexneri2002017MSKVTAIISALVICIIVCLSWAVNHYRDNAIAYKEQRDKAASTIADMQKRQRDVAELDARYTKELADANATIESLRADVSAGRKRLQVAATCAKSTTGASSMGDGESPRLTADAELNYYRLRSGIDRITAQVNYLQEYIRTQCLR
326497..326649                     PHAGE_Entero_Sf101_NC_027398: hypothetical protein; SFxv_0335a; phage(gi849122324)     1.26e-28            Shigellaflexneri2002017MPSMIAIILLIILHIWLCRQGDDHFWSESRLNISLLMLDIEHLARGKGLR
326854..327339                     PHAGE_Salmon_g341c_NC_013059: hypothetical protein; SFxv_0335b; phage(gi255252747)     4.70e-117           Shigellaflexneri2002017MNNFVEITSRIGRMYQDFLISGKGSGDIIEEIDKLSAELRRNGCVNSIFFETLLKQGFMFDMINYNKVAPSASQKSYVYVLHAEDSGLTKIGFSRRVNKRISEISRMSGGKLNLIAKIPADRELETKLHQKYYNYRSHGEWFSLNRCHLKELKEMPGNELK
327473..327547                     PHAGE_Entero_UAB_Phi20_NC_031019: hypothetical protein; SFxv_0335c; phage(gi100023)     4.23e-12            Shigellaflexneri2002017MERHRLLQRPFNEWSRQWLIPYTG
327588..327830                     PHAGE_Entero_Sf101_NC_027398: hypothetical protein; SFxv_0336; phage(gi849122327)     3.65e-52            Shigellaflexneri2002017MAEIIPMTEEQKFQLEIYKLVMNQNAAAEEAFQFIGTDELKLELFKIHFQSGGANSDITTRTIEAVRKSKEALDLFTTGA
327832..328011                     PHAGE_Salmon_HK620_NC_002730: hypothetical protein; SFxv_0337; phage(gi13559864)     1.32e-34            Shigellaflexneri2002017MSRVINLGKEKKFPITQELYERLESVIHDYDGEISLCEAIGTLELLKQSLIEGAKESLT
328233..328523                     PHAGE_Entero_IME10_NC_019501: terminase small subunit; SFxv_0338; phage(gi422934279)     4.60e-64            Shigellaflexneri2002017MTISGLCTFLDITRQTWGTFRSMEGFSDVTSRAEDIIYDQKFSGAAADLLNANIIARDLGLKEQSQVEDVTPDKGDRDKRRSRIKELFNRGTGRDS
328675..330000                     PHAGE_Entero_IME10_NC_019501: terminase large subunit; SFxv_0339; phage(gi422934280)     0.0                 Shigellaflexneri2002017MAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGKYGGEWKGKRFYEPVVFWIGGETNETVTKTTQRILCGRIEENDEPGYGSIPKEDIISWKKSPFFPNLVDHLLVKHHTADGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKDADTIYVSRVWKAKEKTAVQAWGAVKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGITELRDMMLDGRFKVFNTCEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAKMMRDIKKPKEKKIPAPIRPIARRT
330001..332166                     PHAGE_Entero_IME10_NC_019501: portal protein; SFxv_0340; phage(gi422934281)          0.0                 Shigellaflexneri2002017MADENRLNSILCKFDADWMASDEARTEATNDLYFSRVSQWDDWLSNYTTLQYRGQFDVVRPVVRKLVAEMRRNPIDVLFRPKDGANPDAADVLMGMYRTDMRHNTAKIAVNVGVREQIESGVGAWRLVTQYEDNDPTSNNQVIRRLPIHEACSHVIWDANSKQMDKSDAKHCTVINALSRNGWKEFAEDYGIDPDTLPSFQNPNDTWLFPWVSNDVVYVAEYYEVEEKKEKVFIYRDPLTGEPVSYYQQDIKDVIDDLANRGFIKVAERKVKRRRVYKSIITCTQILKDREKIAGEHIPIVPVYGEWSFAGDKECYEGVVRLTKDGQRLRNMIMSFNADIVARSPKKKPTFFPEQIEGYEYMYGGNDDYPYYLQNKTDENGNDLPIGPISYMENPEVPQANAYMLEAATNAVKEVASLGVDAQAANSQVAFDTVNQLNMRADLETYVFQDNLATAMRRDGEIYASMVNDIYDVPRHVTLTLEDGSEKDVQLYAQVVDYQSGNVVTLNDIRGRYECYIGVGPSFQSMKEQNRAEIQELLTKVPQGTPEFQMLMLQYFTLLDGKGVEMMREYANKQLVMMGLKKPETPEEMEMVQQAQQQPQQPSAEQIQAQGILLQGQAELLKAENQQAQIQVEAAKVEAQNQLNAAKIAEIFNNMDLDKQAELREYLKLVGQFQQQRSKDARANAELLLKDADQTHSQRMDFANLMRQVQIPSGGVAETPQ
332180..333091                     PHAGE_Entero_IME10_NC_019501: scaffolding protein; SFxv_0341; phage(gi422934282)     0.0                 Shigellaflexneri2002017MDQTTDIQASEELTLPGNHAVASADGLVVDNANDNAGQEEGFEIVLKDDEKPKQDPATNAEFARRRIERKRQRELEQQMEAVKRGELPEHLRVNPELPKQPDPNDYLSEDALAKYDYDQSRALAAFQQANSEWQIKAMDARSQAVAEQGRKTQEFTQQSAQYVEAARKHYDAAEKLNIPDYQEKEDAFMQLVPPAVGADIMRLFPEKSAALMYHLGANPEKTRQLLAMDGQSALIELTRLSERLTLKPRAKPVSEAPLPDEPIQGHAVAANISAIEKQMEAAANKGDVETYRKLKAQLNKGIR
333091..334389                     PHAGE_Entero_IME10_NC_019501: coat protein; SFxv_0342; phage(gi422934283)            0.0                 Shigellaflexneri2002017MALKEGQLVTYAIDEIIETVQNLTPMASKVTKYTPPAESMQRSSNTVWMPVEQEAPTQTGWDLTGKASGILELSVKCNMGDPDNDFFELRADDLRDERSYRRRIQASARKLANNIESAIAKQATEMGSLVVHDTRSIGPSSTDLSGWDFVSDAERLMFSRELNRDMGISYFMNPDDYRKSGRNLVDGDIFGRVPEEAYRNGTIQRQIAGFDEILRSPKLPAVTKSTATGVTVTGAQKFKPQAYTLDTDGNKENVDNRVATVTVSSTAGFNRGDKISFTGVKFLSQMAKNVLTDDATFSITRVIDGTHIEITPKPIALDDESLTKEEKAYANVNTSLAASTTVNVLNVATTTANVFWADDSIRLLSQPIPVTHELFAGMKTSSFSIPGIGVNGIFATQGDINTLSGKCRIAVWYSACAVRPEAIGVGLPNQTA
334660..335160                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; SFxv_0344; phage(gi422934284)     3.28e-122           Shigellaflexneri2002017MNLTTKGDLVLAALRKLGVASNATLTDVEPQSMEDGVNDLEMMMAEWLGGDASPGINVGYIFADADVAPDPGDEHGLSNNAINAVIFNLACRIAPDYALEASAKLITTARYGKERLVKLSAMDRAKAAKCKSGYPNRMPVGSGNQLAKWNGWNYFHRKEPCDNGSE
335160..336578                     PHAGE_Entero_IME10_NC_019501: DNA stabilization protein; SFxv_0345; phage(gi422934285)     0.0                 Shigellaflexneri2002017MPIQQLPLMKGVGKDFRNADYIDYLPVNMLATPKEILNSSGYLRSFPGIAKRSDVNGVSRGVEHNMAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPTDSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISNPATGAPSVYIIGSGQVSPIASASIEKILRSYTADELADGVMESLRFDAHELLIIHLPRHVLVYDASSSANGPQWCVLKTGLYDDVYRAIDFIYEGNQITCGDKLESVTGKLQFDISSQYDKQQEHLLFTPLFKADNARVFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVLWKRVGRIRKNVGFKLRVITKSPVTLSGCQIRIE
336578..337426                     PHAGE_Entero_UAB_Phi20_NC_031019: membrane-associated initiation of head vertex; SFxv_0346; phage(gi100034)     5.71e-48            Shigellaflexneri2002017MADSNLNTPVIVQATRLDTSILPRNIFSQSYLLYVIAQSTDVGNVASKANEAGQGAYDAQVRNDEQDVILVDHEIRLASAEAKIQDHETRITNAEAAIVGLDSRLTTAENDIDYLTDEVVSIQNTLSDHETRIDALEYATTRKKSEVVYSGVSVTIPTAPTNLVSLLKTLTPSSGTLAPFFDTVNNKMVVFNENKTLFFKLSIVGTWPSGTANRSMQLTFSGSVPDTLVSSRNAATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGAAFTATIIKIIAEQ
337426..337881                     PHAGE_Entero_IME10_NC_019501: head assembly protein; SFxv_0347; phage(gi422934287)     2.35e-109           Shigellaflexneri2002017MIQFKPTRNIDLIEAVGNHPDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYQEIQPLTFDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLNRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
337884..338576                     PHAGE_Entero_IME10_NC_019501: DNA transfer protein; SFxv_0347a; phage(gi422934288)     6.65e-159           Shigellaflexneri2002017MLYAFKLGRKLRGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAADLQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSQQYKDLAGQARYQSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAGQTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAGIGAGIGLLGSLF
338586..340013                     PHAGE_Entero_ST104_NC_005841: gp20; SFxv_0348; phage(gi46358708)                     0.0                 Shigellaflexneri2002017MATWQGTNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERSGANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQIESVRKGMGFIDEEQRNSIGTLAAGARLASSSPEAMQSWLQNNAKELTRVGVDPNSVAQMYQQNPSGFGEFVDHLGMAALGPIDYFNVQDKMAGRDIERGELAETIRSNKAGEGLQAQSIAVSRENSLRTAGGAVPASVKEYQYFNSLSPEQQKTYLRVRGRPDAGGENVVQLADGRTVTVGGKLHGAGANAFYEGIDNEGNMVRVPASSIAAPATSSASAQNYAMKKDIDAIANADASALDFMTGMTGGAGNPAIGADVRSRLTGKEQRQLYNSAQRIQGRMQNQGVAAARDMGASGINTVAEAKMYFQGMPQVDYSSPEAMQQSIREIQEYTNNYNQQYNVNVGKSQRQQSQPAQVSQPAASSNFSSLWGD
340013..342010                     PHAGE_Shigel_Sf6_NC_005344: gene 13 protein; SFxv_0349; phage(gi41057291)            0.0                 Shigellaflexneri2002017MAKAWKDVIASPQYQALAPEQKAQAQEQYFNEVVAPQAGENAEQAKQAFYAAYPLPSVQPVETQQPVAQQQPQQSGFMSDLGEAVKETGRGLVQAGVNVANIPASVADAVTSAAAWAGGKLGIGDGTYQPAPRVTTQGLEQDFGLQQGALTPQTTEGRVFAEALPYLTPAGVERAAAQAPTLAGRIAQGATRLLAENAVGSLAANSAKDDAEALATDLGVGVLAGGAINAAGRGLGAAYRGVRGAIAPEAQQAIRFAEREGVPLHTTDLLQPTSRVGKMAQTTAENIPLAGTSGMRATQQEARSQLVQRFADKFGEYDPAVVIDSLKAKTSGIRRAAGNRLEQVQNAMAGINIQPARAIQQIDTEISNLQKLGKVADNETISKLQSYRDELIRNAGPDGPVNLDLKQLSDLRSQFRMDVKGERPVLPNRSDAAIQRVYKAMTDDINGAIGQNLGNDTLRKYQQANAVYADEAAKLKNTRLKNVLMKGDLTPEVVNNMLFSKNKSEIKTLYNSVGRVGRVQMRNGIIGKAMEKSGGSPDQFLRQLNILQNQTGITFKGQDAAYLKGLKNYLQSTQQAAKAAVTTPTGQQTIPFIIGYGTAMNPATTGAAVSYGLLTRAYESEPFRNAMLRMANTPRGSTAFEKAMQQAQKAINALTQGAKSDALSE
complement(342100..342393)         PHAGE_Entero_Sf101_NC_027398: putative chromosome segregation ATPase; SFxv_0350; phage(gi849122276)     1.95e-63            Shigellaflexneri2002017MPFHPTGEASRMYSKYDEAQFHLRLPHELHAKIKQRAKMNNRSLNSEIIAAIEESLDKQNSASVYIDDAERMAEQQSDMVKKIVFDTLKELYKKDSS
complement(342492..343031)         PHAGE_Klebsi_KLPN1_NC_028760: HNH endonuclease; SFxv_0351; phage(gi971740839)        2.81e-40            Shigellaflexneri2002017MSELYLKVVNMNWNEVFVLKDDGLLYWSDQYLSRPKMFNISKEKPAGHIFKDKNRKTSYIIIRYQDKIYAAHRIIWEMFYGEIPSGMQIDHKDGNGLNNSIDNLRLVSLGENLKNKSKYTNNTSGCAGVSWHKTHKKWVAYISDAGKRINLGYFKSLDDAIAVRREAEKTYGYHENHGR
343089..344243                     PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; SFxv_0352; phage(gi849122277)     0.0                 Shigellaflexneri2002017MTDSINANVVVSMPSQLFTMARSFKAVANGKIYIGKIDTDPVNPENQIQVYVENEDGYHVPVSQPIIINAAGYPVYNGQIAKFVTEQGHSMAVYDAYGSQQFYFPNLLKYDPEQLLQLLQSDEGATYIGTNSGKNLQDELFAIKNEIYQDPLTSWPFGGTLKIKQGVYDVTTPLVLNYDDYPADFVGAPGVRCFYSGENMAETILECRATDFNVKMLGDAAFNSQRLAAYDYIGNMTLKGNPGSYGMLVQNKAHTRLENIVICRHPDGEGLRTDSMLTSDMTNVYLQSNRIGWRATNSVNHSELNAITANRLTCSQNSEWGILGDRWGAGTTINSLTCEGNGTQGDSSTGGAQLAINGLNGSCALVLNNPYFEANAGGGRPCYR
344212..344805                     PHAGE_Entero_Sf101_NC_027398: bifunctional tail protein; SFxv_0353; phage(gi849122277)     1.94e-93            Shigellaflexneri2002017MPGGADLAIDNTGTRPVTVVINGGNFHRVSSARYTHTNIQVTSSGGGKVTVILNGTTFQSAGDYQPSADRPYWITGANCEVVDIGCVFTETTSKATSASALSVTRSGKINANGSIDVATGVSSVNVVATGVYEVSFSHPLAAVASGYIVQITPISAPDSVSCDVTYIGVDTFRVTLRNTLSGAGISSSFAFSITRLL
complement(344872..346122)         PHAGE_Entero_SfV_NC_003444: serotype-specific glucosyl transferase; SFxv_0354; phage(gi19549011)     1.07e-66            Shigellaflexneri2002017MRNWHKISIFILAFTLIWLRRIDILTNAQFWAEDAVFWYKDAYEQGFFSSLITPRNGYFQTVSTLIVGATTFINPIYAPLLSNFFGIIIRAIIIWFLFTDRFKFLSTTSKIFISVYLICMPGLDEVQANITNAHWYLSLYVAMIIISEESKSKLWKAHDLFFIVLSGLSGPFIIFIIASSVFKYLHLSKGVISIRGLYLFYTRLPYLAMILCGLIQATSIILTFNGTRSHAPLGFSFDVMSSIISSNVFLFSFVPWNIANAGWDNHLLSYTLSTLVITLCVFIYIKGNWQMKVFATLPILIVAFSMAKPQLADSVPQLPTLATGNGSRYFVNIHIAIFSLICVCLFQCIKNKTLKIFFKIYVSVILIAMIKLNFFITPLPDMNWSQGAELINKAKHGEAVSFTVLPPWLTLDLIKK
complement(346150..347067)         PHAGE_Entero_SfI_NC_027339: bactoprenol glucosyl transferase; SFxv_0355; phage(gi849250309)     0.0                 Shigellaflexneri2002017MKISLVVPVFNEEEAIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHTTGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMSREVVENIKLLPERNLFMKGILSWVGGQTDVVEYVRTERVAGISKFNGWKLWNLALEGITSFSTFPLRVWTYIGLFVASISFLYGAWMIIDTIVFGNPVRGYPSMLVSILFLGGVQLIGIGVLGEYIGRIYLETKSRPRYLIKSRK
complement(347064..347426)         PHAGE_Entero_SfV_NC_003444: putative flippase; SFxv_0356; phage(gi19549013)          1.43e-74            Shigellaflexneri2002017MLKLFAKYTSIGVLNTLIHWVVFGVCIYAAHTNQAMANFAGFVVAVSFSFFANAKFTFKASTTTMRYMLYVGFMGTLSATVGWVADRCSLPPIVTLVTFSAISLVCGFVYSKFIVFRDAK
347716..347779                     attR                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAATCAATAAGTTAC
complement(347776..348240)         PHAGE_Shigel_SfII_NC_021857: integrase; SFxv_0357; phage(gi526244664)                1.01e-104           Shigellaflexneri2002017MPVHLKESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDLILNPSVPNLSQSRNKEGTNDV
complement(348267..349085)         PROPHAGE_Escher_CFT073: transposase insF; SFxv_0358; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYSMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(349449..350117)         PROPHAGE_Escher_CFT073: transposase IS629; SFxv_0359; phage(gi26250986)              1.22e-157           Shigellaflexneri2002017MLRECIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLQERLGHIPPAEAEKAYYASIGNDDLAA
complement(350414..350659)         PHAGE_Stx2_c_1717_NC_011357: putative transposase; SFxv_0360; phage(gi209447180)     3.48e-44            Shigellaflexneri2002017MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPEREKS
350810..351925                     PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; SFxv_0361; phage(gi100150)       8.67e-25            Shigellaflexneri2002017MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMILCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA
358639..358650                     attR                                                                                 N/A                 CATCCGGCAATA

#### region 3 ####
complement(710943..711452)         PHAGE_Pseudo_MP22_NC_009818: transposase A; SFxv_0728; phage(gi157834977)            8.13e-06            Shigellaflexneri2002017MKSANEINQWMTPKQITELDGMPGTIQGVHKRAKKEGWPKRSQEGRRGPGVEYIPAIPAMQKIAIEEMNADTLKMFSLLINKLGENEVREIELNMAKYGLSGLMQERPSISVDTLLATLGIDRQTLQTALALHKLPPETRQEILSMYGVHKQEEPVAPLLEPQDAKKAV
711624..711860                     PHAGE_Entero_Mu_NC_000929: DNA binding protein ner; SFxv_0729; phage(gi9633495)      5.78e-24            Shigellaflexneri2002017MSNDWHRADVIAALKKTGTPLAKLSRRSGYSTGTLANALVRPWPKGERIIADALNMKPEEIWPSRYLRDHNERVDISN
711835..713469                     PHAGE_Entero_SfMu_NC_027382: transposase; SFxv_0730; phage(gi849255233)              0.0                 Shigellaflexneri2002017MREWISAIECMGLSGLPGSLMGVHKRAQREGWLKRRREGIRGVAYEYHISSLPNIARAEVLLQQGKFKTSQGCFEIARPTLEAHDYDREALWSKWDKASDSQRSLAEKWLPSIQATDEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAALVDGRGASRRNVHKSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSRATAFRRIQQLDEAMVVACREGEHALMHLIPAQQRTVEHLDAMQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYSIPEDFHITIDNTRGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTSVVAGKGWGQAKPVERAFGVGGLEEYVDKHPALAGAYTGPNPQAKPDNYGDHAVDAELFLKTFAEGVAMFNARTGRETEMCGGKLSFDDVFEREYARTIVRKPTEEQKRMLLLPAEAVNVSRKGEFTLKVGGSLKGAKNVYYNMALMNAGVKKVVVRFDPQQLHSTVY
713869..714687                     PROPHAGE_Escher_CFT073: transposase insF; SFxv_0731; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(714684..714929)         PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; SFxv_0733; phage(gi966201425)     8.46e-17            Shigellaflexneri2002017MAKNDAVIHVHTPFVLTLPDGSRREFVKGRHVVEEDVATHWFTRAHAEVSVGKATDARNEVKNAKELRCTGNSGHYHLFFF
complement(714971..715912)         PHAGE_Vibrio_CP_T1_NC_019457: putative major capsid protein; SFxv_0734; phage(gi418489228)     1.60e-14            Shigellaflexneri2002017MITFDQATVDSSGAFLIGELERLDQTLNLPLVGYTWSRDIQLREDASIADDISSWTNTSFAAAGTGANPNGKNWVGKDSTAIAGVNVDIGKSGNPLNLWGMELGWTVIELQAAQQVGRPIDTQKYDGMQLKWQMDNDEQVYVGDSALNLKGLVTLDGVPVNNAAKTWATSTPDEIRASINQVLSDAWAASGYSVVPRDLLIPPEQFALLSSIIVSSAGNQSLLTNLQTNTISYHQNGVPLNIRAVKWLKGRGVGNKDRIVAYTNDKKYVRYPLVPLQSVPVQYRGLYQIVTYYGKLGAVEPVYKETISYVDGI
complement(716057..716413)         PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; SFxv_0735; phage(gi966201423)     4.58e-65            Shigellaflexneri2002017MNNVFLYRMPVGIAGAVSRPQDLTVEPVVLKSDNAFAAYGLAGKYDDDGFFVPLADGDTADKVKGIYVRPYPTTSQPDMVRQVGTGKNFPGDAMKRGYVTVNLGSDFDASTIKKGDLH
complement(716417..717637)         PHAGE_Iodoba_phiPLPE_NC_011142: gp27 putative head protein; SFxv_0736; phage(gi197085641)     5.77e-20            Shigellaflexneri2002017MKYFFETRLGETRYRLADGSLLCKDVPIGRTGKQLYGADDLPKLKPDKFVEIVVTRSPEQVFHPATLASFEGMSITILHPEDENGNVRLVNPENWKVLAVGHLQNVRRGTGEQSDLMLADLIVKDESAIQLIEDGLREVSCGYDAEYEQTEPGKAEQVDITGNHVALVPKGRAGNRCAIGDRDTMANQKKNWWNRMRAAIKTGDADTMNELVESAPASVTGDEGDLPQGVNLNINLSPQQPLPDKAPEMGGDPTGDSDDDLKTLLKALLAKLERNATGDNDNKPDDNPTGDGEDDEEETTITGDSAWRAEVIVPGIDLSRKMKPTAFKREVLASADKTLVRQIVGDADIRKLPKQSVDMAFNAVSEVAKGRNTRATTGDAQRLNMGMTSIASLNKQNAEFWANRKG
complement(717641..718099)         PHAGE_Salmon_SEN34_NC_028699: putative head morphogenesis protein; SFxv_0737; phage(gi966201421)     8.32e-86            Shigellaflexneri2002017MGQVMQSIIAEQVKYIKSLPLEAADRVYDIQNKAIEAVVTGGRAEQFAKEIASTGDVAKSRADLIARTELGRATGALDMARAIAIGSDGYIWRTADDGDVRDSHDHMKGKFVRWDSPPTLDGMTGHAGELPNCRCYKEIVFVRVPFAMKRAA
complement(718275..719741)         PHAGE_Salmon_SEN34_NC_028699: putative portal protein; SFxv_0738; phage(gi966201420)     0.0                 Shigellaflexneri2002017MARNKQALRRTVQATADGYENFIARVGMQTPNQHSASTYRANFTSRNRMLVEWSYRSSWIIGEAVDAIPDDMTRKGIRITSEIDAKDRGILESQLDELQIWDALNDVLKWSRLYGGAVGFIMIEGQAPMTPLRPETIGKGKFKGILPLDRWMVDPALTRRIKDMGPDLGKPEFYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVERIWDRLTAFDSATVGAAQLVYKAHLRTYSVEKLRELIALGGPAYEALLKNIDLIRQFQSNEGMTLMDSRDKFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGFSTGDADLANYYDRISSLQERRLRLPVRRILDIMHRSELGKPLPDDFTFEFNPLWQMSDVDRSTVALNTTNAISTAMGDGLMTLKAAMTDLRENSDVTGIGASITNEDIENAEDEAPPGIGEPDDEPQEPSGGNPVSNQPTQDSEGGRRHRKWSLRWFK
complement(719962..720501)         PHAGE_Edward_GF_2_NC_026611: putative terminase large subunit; SFxv_0739; phage(gi764162249)     1.64e-58            Shigellaflexneri2002017MSGNIGANPAIIKLSWIEAAVDAHKTLNFEPSGRKRIGFDVADSGTDKCANVYRHGSVVFWADEWKAKEDELLKSCQRTYQAALEREADIVYDSIGVGASAGAKFSEINADRKSENAYARRVNYQRFNAGAGVHEPDDEYNGIPNKDFFANLKAQAWWLTVSEIRLTPLTTENSILWMS
complement(720486..721391)         PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SFxv_0742; phage(gi24114950)     0.0                 Shigellaflexneri2002017MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
720915..721346                     putative IS2 ORF; SFxv_0740                                                          N/A                 Shigellaflexneri2002017MQCLTITAVQRERDTQSLSVITAELEPVRAPSLIAFFHGHSACMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
complement(721349..721714)         PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; SFxv_0743; phage(gi17546153)     9.81e-59            Shigellaflexneri2002017MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
complement(721790..722491)         PHAGE_Acinet_IME_AB2_NC_041857: hypothetical protein; SFxv_0744; phage(gi100027)     4.24e-122           Shigellaflexneri2002017MESVTSMTSTLTSKPTLNPALRSFWTMRARNKVLYGGRSSSKSWDAAGIAIFLSNKYTLRFCCARQIQNKIEESVYTLLKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGIDMLWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPPEGTLIRKINYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIRLAP
complement(722424..723188)         PHAGE_Escher_PA28_NC_041935: hypothetical protein; SFxv_0745; phage(gi100067)        1.06e-17            Shigellaflexneri2002017MAKPDWEAIESAYRAGVLSLRDIGEKYGVTEGAIRKRAKKLDWARSGGTQVCKNGTQKRKVRTSRKPAITGLTQKSTQLKTESTPDTKPIRGMRTDPPTNPFQPGNQQALKHGGYARRLLLKDEVIEDAKALTLEDELFRLRANNLVAAENIGRWLVSLEDANGDQERKMLIENISAAEKAMMRNTVRIESIVGTLATVGKIFADTAYRKAATDKVSLEADRLRRDAGIDDGNGERDLNDFYSDIQTDAESGFT
723383..723895                     hypothetical protein; SFxv_0746                                                      N/A                 Shigellaflexneri2002017MMEWINALMNYFVLHPYRLWGLLFIIAFTKSTLLISAILPPASIMMATVITVSKTTLSPWEAGITVMSGAWCGTIVNYHLGIIIGHIPQLACIISSRSNTIERVRLQLQNNSVSILFTSRFIAVLRYIAPLVAGMLQLHPVKVYTVSLISAASWSALYVGSFSFVLPFFS
complement(724028..724255)         PHAGE_Salmon_SPN3UB_NC_019545: Rz1; SFxv_0747; phage(gi423262446)                    2.25e-28            Shigellaflexneri2002017MAKFSVPLQKLKMMLFGASLIMVVGCSSKENALCHPQPKPPAPPAWAMMPPSNSLQLLDETFSVSGTESSATRQH
725111..725470                     PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; SFxv_0748; phage(gi41057343)     1.57e-84            Shigellaflexneri2002017MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
725400..725921                     putative bacteriophage protein; SFxv_0749                                            N/A                 Shigellaflexneri2002017MGYPQTNRKIDTGKTLTRWPVFVDHFSGGKTGNMFNLMLTSKKLTKTAINEALRRMKKAGLNKSELEAFLRDMINGKQKSWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKCKMAELLNDAHPKWSLRTCERRIEHWLKVAEFILYKPMVMAFGIEKKVIAF
726111..726184                     tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCA
726189..726262                     tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGG
726268..726339                     tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGCA
726346..726417                     tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCT
727025..727192                     PHAGE_Entero_SfI_NC_027339: putative lysozyme; SFxv_0750; phage(gi849250281)         3.50e-12            Shigellaflexneri2002017MIQAIRVLLMAFFLSDSTGLSGGRDMYQMEKISTGIAYGTSAGSAGYWFLQWLDQ
complement(727233..728024)         PROPHAGE_Escher_CFT073: transposase insF; SFxv_0751; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
728638..730497                     PHAGE_Entero_Min27_NC_010237: putative replication protein P; SFxv_0753; phage(gi170783639)     0.0                 Shigellaflexneri2002017MRPSELSDLLWAQVDRVAPHLLPNGKIEGHEWVAGNVNGDKGNSLKVNLIGKKKWADFAEGDGGDMLDLWMACRGINLHQAMQEAKAFLGIKDDDHHFDARREKKFSRPDRKKIARYVTRTESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELDALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEIDCMSYAQYGISALSVPFGGGKGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSRLGEHRCRLVTLPYKDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYQDTINAFYGKQQYLFNPPWESLADKFQFREAELTLVNGVHGHGKACPLNEPILLADGTWTTHGNVKIGDQVASVDGNPSTVTGIFPQGVRDVYRVTFEDGRYVDCAGDHLWEVTSRGFTKGEKRRVIDTFGLKRLSETKRHKNGVRIPEITGDFGDHSEPLAWVIGSLLGDGSLSNGSVKFSNVEPYMIERMKAELPDYNFSGDGKDWLISTARGQVNPLMETLRGYGLMGCTAKNKFIPRVFFSANKSTRIGMLCGLLETDGYVEKDGTLVFSSASEELRNEVVNKNWPPS
complement(730472..731311)         PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; SFxv_0754; phage(gi41057343)     0.0                 Shigellaflexneri2002017MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
732608..733999                     PHAGE_Entero_phiP27_NC_003356: putative helicase; SFxv_0755; phage(gi18249883)       0.0                 Shigellaflexneri2002017MTTPVWRNDDLEGAVIGAFFLRGADPEVMDILATLPADVFSVRAYQDIYTGICRQARVSGVIDPVLLCNEMPELAPVITDTGRKTWVKSSLEHYVAALRRNAALRDAEKTLNEALQKLRDAHTCEAAEDALKDAQNMMVTLSTGKGVIQPVHIDDVLPEVVERVECRNQGLEKSRTLMTGIDELDAKTGGMEPGDLVFIAARPSMGKTELALDIIDKVTEQGHGVLLFTMEMANIQIGERMVSAAGGMPVSRLKSVAHFEDEDWTRFSQGVGRMTGRNIWMVDQANLAIDEICATTKHHLIKYPETALVVVDYLGLIKTRTTGRHDLAVGEISKGLKGLAKSGGFPLIALSQLSRGVESRPNKRPMNSDLKNSGEIEADADIILMLYRDEVYNPDTQARGIAEINITKQRNGSLGTIYRRFYNGHFLPVDQESARVLSTPMKPGNPRRYSNKRTDSSKMERFF
733996..734253                     PHAGE_Entero_phiP27_NC_003356: hypothetical protein; SFxv_0756; phage(gi18249884)     3.70e-48            Shigellaflexneri2002017MNNQTMTFTPEQLRKHAQEMLRHAEQLEKTGITKDAIRKDMVPALRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEALR
734348..734548                     PHAGE_Shigel_Stx_NC_029120: NinH; SFxv_0757; phage(gi985761277)                      1.64e-29            Shigellaflexneri2002017MSVKIQTIPELLIQTRGNMTEVSRMLNCNRATVRKYAEDKEGKGHAIVDGVLIVHRGWDRGKDSDA
734541..734921                     PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; SFxv_0758; phage(gi985761278)     1.63e-79            Shigellaflexneri2002017MRDIQQVLERWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMVICGCMARLNRNNNDLHDLLVDYYVFGMTFMTLARKHGCSDGYIGKKLQKAEGVVEGMLMMLGVRLEMDKYIEHP
735121..735194                     tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCA
735199..735272                     tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGG
735278..735350                     tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCA
735357..735428                     tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCT
735724..735939                     PHAGE_Entero_VT2phi_272_NC_028656: holin; SFxv_0760; phage(gi966197762)              4.87e-35            Shigellaflexneri2002017MKSMDKISTGIAYGTSAGSAGYWFLQWLDQVRPSQWAAIGVLGSLLLGLLTYLTNLYFKIREDKRKAARGE
735943..736572                     PHAGE_Stx2_c_86_NC_008464: hypothetical protein; SFxv_0761; phage(gi116221997)       1.96e-40            Shigellaflexneri2002017MKHEEMNQRFNHLENEITELNKKLSALVSSEDENKRRDEHYAAIYDYCHKVAHETFMKFLQEKFLPAALSEKEAAYLRPEYVITVNSAGEEEHKSDFIASAPDKDQEPHRPFRVSCEEGEFVVYENGKPVRASHHHCLKIINLAIRCLKDENTRVMKRIGRCMGYLQVAAEIEALASGADMDAAVREALLRDFNTPPLRKSLMTGSSRG
736638..737171                     PHAGE_Entero_mEp460_NC_019716: endolysin; SFxv_0762; phage(gi428782372)              5.35e-127           Shigellaflexneri2002017MSAKIKYGLSAAVLALIAAGASAPQILDQFLNEKEGNHTTAYRDGSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQKAGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDVGRDCRIRSNNCYGQVIRRDQESALACWGIDQ
737168..737572                     PHAGE_Salmon_HK620_NC_002730: endopeptidase; SFxv_0763; phage(gi13559860)            7.88e-90            Shigellaflexneri2002017MSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNAGELKLANATITDMQQRQRDADALDAKYTKELADAKAENDALRRKLDNGGRVLVKGKCPVPSSAETSSASGMGNDATVELSPVAGRNVLGIRDG
737972..738790                     PROPHAGE_Escher_CFT073: transposase insF; SFxv_0764; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
738818..739141                     PHAGE_Entero_N15_NC_001901: gp1; terminase; phage small subunit; SFxv_0765(gi9630465)     2.82e-23            Shigellaflexneri2002017MPVHLKLLIARWELTAEQAVAQQLKNQVSKGNLIDTGFCIFALSKLAMALSSTLDSIPLSMQRQFPDLTPRHIDHLKILIAKGANQCARAGDKLPDLLDEYIRTTTE
739113..741023                     PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; large terminase subunit; Lambda gpA homolog; terminase; phage large subunit; SFxv_0766(gi169257235)     0.0                 Shigellaflexneri2002017MNISEQQLSNMMVAVTIALQPLVRVLPVTAVEWADQNYYLPKESSYGEGEWKTLQFQVAIMNCMGNDEIRTVNLIKSARVGYTKMVLGVIGYFIEHKSRNTLLFQPTDSAAEDFMKSHVEATIRDVPCLKKLSPWLGRKHRDNTLTLKRFSSGVGFWCLGGAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKIKGSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDDATSFGLKWEKGKPETVYYLCEHNGCVIRQSELDQTGGRWICDNTGMWTCDGLTFFSASGNEIPPPRSITFHIWTAYSPFTTRVQIVCDWLDALKDPNGVKTFVNTTLGETWEEAVGEKLDHQVLMDKVVPYTATVPVRVVYLTAGIDSQRNRFEMYVWGWAPGEEAFLVDKIIIMGRPDEEETLLRVDAAINKKYRHADGTEMTISRVCWDIGGIDGEIVYQRSKKHGIFRVLPVKGASVYGKPVITMPKTRNQRGVYLCEVGTDTAKEILYARMKADPTPVNEATSYAIRFPDNPEIFSQTEAQQLVAEELVEKWEKGKMRLLWDNKKRRNEALDCLVYAYAALRVSVQRWQLDLAVQLHPARMQLHNRPLKNWQRSCPEE
741024..741227                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-to-tail joining protein; adapter between portal and gpFII; Lambda gpW homolog; SFxv_0767; phage(gi169257234)     6.48e-18            Shigellaflexneri2002017MVTVAELQALRQARLDLLTGKRVVSVQKDGRRIEYTAASLNELNRAINDAESVLGTTRRRRPLGVRL
741224..742279                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage portal protein; Lambda gpB homolog; SFxv_0768; phage(gi169257233)     0.0                 Shigellaflexneri2002017MKRTPVLIDVNGVPLRESLSYNGGGAGFGGQMAEWLPPAQSADAALLPALRLGNARADDLVRNNGIAANAVALHKDHIVGHMFLISYRLNWRWLGMRETTAKSFVGEVEAAWSEYAEGMFGEIDVEGKRTFTEFIREGVGVHAFNGEIFVQPVWDTETTQLFRTRFKAVSPKRVDTPGHGMGNHFLRAGVEVDRYGRAIAYHICEDDFPFSGAGRWERIPRELPTGRPAMLHIFEPVEDGQTRGANQFYSVMERMKMLDSLQATQLQSAIVKAMYAATIESELDTEKAFEYIAGAPQGQQDNPLINILEKFTRWYDTNNVTLGGVKIPHLFSWRCAEPADSAGFRQWIFGA
742807..744312                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage prohead protease; Lambda gpC homolog; SFxv_0769; phage(gi169257232)     0.0                 Shigellaflexneri2002017MRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQQQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTGYDGIVACLQQAMADTQVRGVLLDIDSSGGQATGAFDCADMIYRLRQLKPVWALCNDTACSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGHLAQAGVDITLIYAGSHKVDGNQFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVDAVMGTEAAVFEGQSGIEAELADELINASDAISVMAATLNTHDTGGTMPQLTATEAAAQENQRVMGILTCQEAKGREQLATMLAGQQGMSVEQARAILAVAAPQQSGVSAQSEADRIMACEEAKGREQLAATLAAMPEMTVEKARPILAASPQANAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLAAASGRAEPVSASTTAMFEHFMANHSPAAVQGGVPQTSADGDADVKMLMAMP
744349..744696                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head decoration protein; Lambda gpD homolog; SFxv_0770; phage(gi169257231)     2.82e-54            Shigellaflexneri2002017MVTKTITEQRAEVRIFAGNDPAHTATGCSGISSATPALTPLMLDEDTGKLVVWDGQKAGHVVGILVLPLEGTETVLTYYKSGTFATEAIHWPERVDTHKKANAFAGSALSHAALP
744754..745782                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major capsid protein; Lambda gpE homolog; SFxv_0771; phage(gi169257230)     0.0                 Shigellaflexneri2002017MGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDKITGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLNGPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGEQFETVEVDFGRSVGNNITQAGGTEWSAQDRDTFDPTHDLDAYCDFASGTINIAIMDGKVWRLLNGFKLFREKLDTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPDGTLVLGNTAAEGIRCYGAIQDAQALSEGVVASSRYPKHWLTVGDPAREFTMTQSAPLMVLPDPDEFVVVQVK
745834..746220                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; SFxv_0772; phage(gi169257229)     3.65e-12            Shigellaflexneri2002017MATKEENLKRLCELAERLGREPDVSGSAADIAQRVAELEEELGDAGEVAEPDTYSPSKDDPTAHKGESVPEQPGIVTGDETGQVTVVALATLHTKCNGSVIFVSPGTSFRVSAEVAASMAAGGLAKRQ
746232..746609                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage minor capsid protein; forms tail attachment site on head; Lambda FII homolog; SFxv_0773; phage(gi169257228)     5.10e-34            Shigellaflexneri2002017MDGFDNLFDAALAGVNEVILRDMGISAVITSGELEGTHLTGVFDDPESISFVAGGIRLEDSSPCLFVKTADISQLRRQDTLTIGDDSFFVDRITPDDGGCCYIRLRRGSPAPQNNARMRRYDEGT
746596..747180                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head-tail assembly protein; Lambda gpZ homolog; SFxv_0774; phage(gi169257227)     3.92e-100           Shigellaflexneri2002017MKGLENAIRNLNSLDTRMVPQTSAWAVNRVAAKIVSVATRQVAQNTVAGDNQVKGIPLKTVRERVRLLKASPSGKMYARMRVNRGNLPAIKLGTAQVRLARSRHGSNSRHRGSVLKVGKYLFRDAFIQQLANGRWHVMRRIDGKNRYPIDVVKIPMSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
747177..747578                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail shaft stabilization protein; Lambda gpU homolog; SFxv_0775; phage(gi169257225)     9.60e-65            Shigellaflexneri2002017MNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFVRAQAPDSELDTWMENTIFPAMKDIPVLSGLIDTMIPLGFNYQRDNEMATWAMAEITYQITYTN
747583..748329                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major tail subunit; Lambda gpV homolog; SFxv_0776; phage(gi169257224)     5.51e-105           Shigellaflexneri2002017MVMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGRKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAVTVSAP
748370..748774                     PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage tail assembly chaperone; Lambda gpG homolog; SFxv_0777; phage(gi169257223)     5.55e-43            Shigellaflexneri2002017MHPENMMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
748783..749112                     PHAGE_Phage_Gifsy_1_NC_010392: part of bacteriophage tail assembly chaperone gpG by translational frameshifting; Lambda gpT homolog; SFxv_0778; phage(gi169257222)     3.13e-42            Shigellaflexneri2002017MQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH

#### region 4 ####
752453..753151                     PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; SFxv_0780; phage(gi148609397)     2.42e-155           Shigellaflexneri2002017MQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
753087..753899                     PHAGE_Entero_cdtI_NC_009514: putative tail protein; SFxv_0781; phage(gi148609398)     2.24e-167           Shigellaflexneri2002017MSCATIPVISAVSFPSINFLSKSMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
753836..754438                     PHAGE_Entero_cdtI_NC_009514: putative tail component; SFxv_0782; phage(gi148609399)     2.45e-119           Shigellaflexneri2002017MARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
754499..757978                     PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; SFxv_0783; phage(gi148609400)     0.0                 Shigellaflexneri2002017MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLVVVMKKSTAGISIS
758046..758645                     PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; SFxv_0784; phage(gi148609401)     4.21e-132           Shigellaflexneri2002017MRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
758667..759770                     PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; SFxv_0785; phage(gi18249920)     2.36e-69            Shigellaflexneri2002017MTARWFRRAFCGVNMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYRYWPISRLTG
complement(760874..762637)         PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; SFxv_0786; phage(gi169257209)     3.16e-09            Shigellaflexneri2002017MKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGAATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPPSLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPDLPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRLPELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
762747..762926                     PROPHAGE_Escher_CFT073: transposase; SFxv_0787; phage(gi26246249)                    5.41e-07            Shigellaflexneri2002017MWLAENEGVKFWLNVLTELKKRGWSPYLFIKPVVCPPQHHFSALIEILSMVVNSANPVR
complement(763220..763696)         protein ybhB; SFxv_0788                                                              N/A                 Shigellaflexneri2002017MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDVERIDVDEGASGAMVGFNVHFHSLASASITAMFS
complement(763755..765155)         PHAGE_Mycoba_Lukilu_NC_041901: chaperone for tail fiber formation; SFxv_0790; phage(gi100190)     8.54e-06            Shigellaflexneri2002017MSSVGGEPWGFSKTCFLLLIRCRLVNLNLFNLVYKSIMTTDDLAFDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKTQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ

#### region 5 ####
896064..896075                     attL                                                                                 N/A                 AAAAAAACAGTA
907798..908589                     PHAGE_Escher_RCS47_NC_042128: hypothetical protein; SFxv_0925; phage(gi100134)       4.60e-16            Shigellaflexneri2002017MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLVVTMVLGVVFVWMMVRVYNSIDTVPTWYSIWTPMGWAMRLLPAISVLALVVSGVMSVMQGTELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS
complement(908625..909251)         Protein ycaC; SFxv_0926                                                              N/A                 Shigellaflexneri2002017MTKPYVRLDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNNVLALGDLAKYFNLPTILTTSFETGPNGPLVLELKAQFPDAPYIARPGNINAWDNEDFVKAVKATGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGAQLMTWFGVACELHRDWRNDIEGLATLFSNHIPDYRNLMTSYDTLTKQK
complement(909407..909535)         hypothetical protein; SFxv_0927                                                      N/A                 Shigellaflexneri2002017MRIMPPPKTLSMGENTRISQRRYYRFILLIHNANAEEMINLI
909566..910714                     putative MFS-type transporter; SFxv_0928                                             N/A                 Shigellaflexneri2002017MSTYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVGVVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLSSFIFAAGCAGLGLMIGFWSWLAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSVLPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITAMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGSLLGPSFSAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV
911027..911704                     PHAGE_Stx2_c_1717_NC_011357: truncated transposase; SFxv_0929; phage(gi209447151)     1.59e-09            Shigellaflexneri2002017MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALIDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLSDPLTPELLRALIREMKGGIRW
911698..912048                     PHAGE_Stx2_c_1717_NC_011357: transposase; SFxv_0930; phage(gi209447152)              2.45e-34            Shigellaflexneri2002017MVTLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMVKILWADRDGLCLFTKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
913682..913948                     PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SFxv_0932; phage(gi24114950)     4.50e-59            Shigellaflexneri2002017MLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
913933..914181                     PHAGE_Salmon_HK620_NC_002730: endopeptidase; SFxv_0933; phage(gi13559860)            1.18e-41            Shigellaflexneri2002017MSGNIGANPVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNARELKLANATITDMQQRQRAADALDAKYTTELANAK
complement(914187..915026)         PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; SFxv_0934; phage(gi41057343)     0.0                 Shigellaflexneri2002017MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(915638..915793)         PHAGE_Entero_933W_NC_000924: host killer protein; SFxv_0935; phage(gi9632541)        6.33e-28            Shigellaflexneri2002017MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESRK
complement(916021..916707)         hypothetical protein; SFxv_0936                                                      N/A                 Shigellaflexneri2002017MTSINIFMTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASEIDYTIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWDYNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKEEKE
complement(916855..917268)         PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; SFxv_0938; phage(gi100050)      8.08e-12            Shigellaflexneri2002017MKLAIRLQLPLAFASKERSMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
complement(917269..917691)         PHAGE_Shigel_Stx_NC_029120: LygF; SFxv_0939; phage(gi985761265)                      1.15e-65            Shigellaflexneri2002017MAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDREIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
complement(918598..919236)         PHAGE_Escher_TL_2011b_NC_019445: hypothetical protein; SFxv_0941; phage(gi418487646)     2.54e-53            Shigellaflexneri2002017MASNWIKLEVITPDKPEIFRLAEILNIDPDAALGKVIRFWAWADQQMIDGNADCNARGVTKSAIDRITFMSGFADALIQVGWLVENDGGLSLPNFERHNGKSSKKRAVTNERVTKIRELKRKGNAASVTQTDQKALPVEEEEEDLNTDLPLNPPRQKRASKKFEPEAIELPDWLPETLWHEWVRFRQALRKPIRTEQGDTGTGKIPSAGFYT
complement(919314..919736)         PHAGE_Entero_mEp237_NC_019704: CII protein; SFxv_0942; phage(gi435439306)            1.03e-09            Shigellaflexneri2002017MKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELSLVPGKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKAHFSGGGSPGDSVVVH
complement(919720..919947)         PHAGE_Pectob_ZF40_NC_019522: putative cro anti-repressor; SFxv_0943; phage(gi422936651)     9.89e-13            Shigellaflexneri2002017MLKIDAIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQEASGGELQYDPKVYDEYRKAKRPGKVIHENQA
920024..920431                     PHAGE_Cronob_phiES15_NC_018454: putative transcriptional repressor DicA; SFxv_0944; phage(gi401817574)     5.09e-39            Shigellaflexneri2002017MKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPESEQKALLSEMRARVENFNKLFEELLKARKRSANK
920580..920789                     PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; SFxv_0945; phage(gi472340166)     4.23e-11            Shigellaflexneri2002017MFSANSSATPALRGNGVNMNTIDLGNNESPVYGVFPNQDGTFTAITYTKSKTFKTEAGARRWLGRHSGE
920791..920994                     PHAGE_Shigel_Stx_NC_029120: hypothetical protein; SFxv_0946; phage(gi985761256)      6.85e-11            Shigellaflexneri2002017MNETELKHVIALLLEDAKRLQQLEPNAGTGARIWLAKEALESGDYDSEEAFYKAEGRAGYSPGLGGV
complement(921236..922141)         PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SFxv_0949; phage(gi24114950)     0.0                 Shigellaflexneri2002017MDSARALIARGWGVSLVSRCLRASRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGPEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
921665..922096                     Insertion element IS2 protein; SFxv_0947                                             N/A                 Shigellaflexneri2002017MQCLTITAVQRERDTQSLSVITAELEPVRAPSLIAFFHGHSACMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRCPETTAD
complement(922099..922464)         PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; SFxv_0950; phage(gi17546153)     9.81e-59            Shigellaflexneri2002017MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
922904..923860                     PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; SFxv_0951; phage(gi428782357)     1.14e-67            Shigellaflexneri2002017MVWVGKPTVIVNWLTSPGGTRHRINKVHFGDERKEKMLNVAIENQNGWNYSAPAPHKTGAGIATPTMTTAHNRAQAVFLCVKHSHIQIMVGRAGQPQGWPVSVVTGCSNPVRLTTHEIATSGGESFKLTIEAAIMATILTLSHPDATIENGRAVTTSVAVAEFFRKMHKNVIQKIETLECSPEFNRLNFKPVTYTDAKGEKRPMYQITKNGFVFLVMGFTGKKAAAFKEAYIAEFDRMEAELRQNNTPPADKMIPGDGRTLVVHFDKFGNVEFTETVPDGALVCTLETFRFYLEKQGWTLVNRGAIKNMTVEQLLSLK
924185..924322                     hypothetical protein; SFxv_0953                                                      N/A                 Shigellaflexneri2002017MPAMAGIRSTLIKEKNMNTNYEATVATTDNIVHEVYLEGKHIEVA
924712..925503                     PROPHAGE_Escher_CFT073: transposase insF; SFxv_0954; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQIAA
complement(925528..926172)         PHAGE_Shigel_Stx_NC_029120: exodeoxyribonuclease VIII; SFxv_0955; phage(gi985761253)     8.27e-27            Shigellaflexneri2002017MSTKPLFLLRKAKKSSGEPDVVLWASDDFESTSTTLDYLLVKSGKKLSNYFKAVATNFPVVNDLPPEGEIDFTWSERYQLSKDSMTWELKPGAAPDDVHHQDNAQETKELAGGQEENAQADAHEDCQDCEVSVATLRFTQRLLHIFTYAAGDLKYLHHATREQRKHITALEMDQENSYVQNLLLAIRGMAEPTTLDNAALLRLTDAIKAEVYWQ
complement(926301..926504)         putative bacteriophage protein; SFxv_0956                                            N/A                 Shigellaflexneri2002017MVVSAIASTPHIGYVIKTENKETPFTVVDIDGLSGNFKTLVEGATKMCLVYIGNNLPAEKKPNFWQI
complement(926516..926995)         PROPHAGE_Escher_CFT073: transposase insF; SFxv_0957; phage(gi26249410)               5.18e-115           Shigellaflexneri2002017MADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(927371..927673)         PROPHAGE_Xantho_33913: ISxac3 transposase; SFxv_0958; phage(gi21231087)              6.86e-12            Shigellaflexneri2002017MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLCKALNEARLERDILKKATAYFAQESLKNTR
927712..928356                     PHAGE_Escher_Av_05_NC_025830: tail fiber protein; SFxv_0959; phage(gi730985066)      1.45e-43            Shigellaflexneri2002017MSVKLRLPHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQRIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPNSLGRLYPVVMAAKSDIVRDVMTWGDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
complement(928536..930362)         PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; SFxv_0961; phage(gi169257209)     4.04e-05            Shigellaflexneri2002017MREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQENIIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQFRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSDDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS
930742..930753                     attR                                                                                 N/A                 AAAAAAACAGTA
930853..930984                     PHAGE_Entero_P88_NC_026014: DNA invertase; SFxv_0962; phage(gi744692743)             3.20e-12            Shigellaflexneri2002017MLIGYVRVSTNDQNTDLQRNAFICAGSELIVARMGSWPEVVMA

#### region 6 ####
1138006..1138017                   attL                                                                                 N/A                 TGGTAGTGTCCG
1150136..1151470                   PHAGE_Escher_HY02_NC_028872: putative tail length tape-measure protein; SFxv_1191; phage(gi971750937)     2.00e-51            Shigellaflexneri2002017MPVFITVIADHDKPQPSGCLLDNLSSAAVKTAGVLISFQAVLSAYQRVMEVGLQRASAERSIDFVFSKDANQVKDFTKSLAQTTGLDIAELQSQFAGFGASARESLGIQGSEELFRNMIGYSRLMGRSEEEIKRALTALSQMAGKGQIMAEELKGQLAEAVPGMVQVFAKATGKTEQELFDAMKKGALKSADTLQKVTQELNKQITAKGGWKAISESTQAQLGNLKNSWNTTLDSIFRGSENGLQDFTRSLTNLLNALGGSGKSLGESLGSLMTSMSHGVDSLTDISYRVRAFFDEVTLAYRPLNDTQRKIVDGLSDGLIDGLKMLAVAVTAQKAANVAGGLLNLANAVTSFGDAVNKAKAGKAGSSGGALNKVGRVVLYAELVNFALDNLNPEAAKNPNLHQSGIGTETNFNPEYKGDSSKPIVLSLTGLMVQLIKLLTSKNR
complement(1151843..1152511)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; SFxv_1193; phage(gi157166067)     6.98e-159           Shigellaflexneri2002017MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPEQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(1152726..1153052)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; SFxv_1195; phage(gi157166066)     1.53e-72            Shigellaflexneri2002017MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKK
1154293..1154652                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; SFxv_1196; phage(gi41057343)     1.57e-84            Shigellaflexneri2002017MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
complement(1154658..1155161)       PHAGE_Staphy_SA1_NC_027991: phage conserved protein; SFxv_1197; phage(gi937456837)     9.58e-73            Shigellaflexneri2002017MSGDSGGQSSESGSTLISRDNKLVENFIDTLENWRDQKQIISVICKDGIKIDDSIITSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDVSAATGRTSTTNDGGATSKKNTGNTTTSLGSPMLTCKELFSYSASELSDEALKARVTCSKSVSVKNGESTFTASANE
1155225..1155590                   PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; SFxv_1198; phage(gi17546153)     9.81e-59            Shigellaflexneri2002017MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
1155548..1156453                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SFxv_1199; phage(gi24114950)     0.0                 Shigellaflexneri2002017MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(1155593..1156024)       putative IS2 ORF; SFxv_1201                                                          N/A                 Shigellaflexneri2002017MQCLTITAVQRERDTQSLSVITAELEPVRAPSLIAFFHGHSACMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
1156849..1157175                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; SFxv_1202; phage(gi157166066)     1.53e-72            Shigellaflexneri2002017MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKK
1157390..1158058                   PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; SFxv_1204; phage(gi157166067)     1.28e-159           Shigellaflexneri2002017MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPEQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
1158684..1159502                   PROPHAGE_Escher_CFT073: transposase insF; SFxv_1205; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1159515..1159526                   attR                                                                                 N/A                 TGGTAGTGTCCG
complement(1159527..1160465)       PHAGE_Bacill_WBeta_NC_007734: putative site-specific recombinase; SFxv_1206; phage(gi85701406)     1.19e-11            Shigellaflexneri2002017MNMRRAISYIRFSSERQLKGDSVRRQSKLVTDWLDKNPEFYLDSSLSFKDLGKSAFSGKHLKGGLGDFLTAIEKGLVKAGDTLLIESLDRLSRQDIDIASELLRRILRAGVDVVTLSDGEHYTRESLKDPLALIKSILIMQRAHEESLRKSERVQAAWNRKKELISEGIKVSRRCPAWLRLNDDRRTFTIIPDKVEVVKRAFDLRLQGLSFWAITRTLNDEGHLSLNQYTPKQKGWSDTAVKKLLRNRAVIGCFTPAGREEVQGYYPAIISESLFYRVQQLNTGQYGRASVSSNPLSVNLFRGIIKCEVYWQ

#### region 7 ####
1232248..1232268                   attL                                                                                 N/A                 CGGTGTAGTTAATGGTGTAGT
1232274..1233524                   PHAGE_Salmon_vB_SosS_Oslo_NC_018279: integrase; SFxv_1284; phage(gi399528791)        1.29e-68            Shigellaflexneri2002017MMTGIKIMSRALNKLSDTQLRKINGTPAQKTAFLNDGGNLSVRHSTSGLLTWYFTYRAGTGRGAPPERIKLGNYPDLSLKSAREKAAQCRAWLAEGKNPRHELNYTVQEALKPVTVGDALTYWLESYAKENRVDYAALKKRLNNHVIQHIGAMPLDKCELRHWLACFDQVAKRTPVTAGFLLQTCKQALKFCRRRRYAISNVLDDMSVADVGKKPDISERVLSTKELGELLQALDKKIFSPYYIALIRLLIVFGCRTVELRLSEISEWDFTEMLWTVPKEHSKTKVAIFRPIPEAILPFVTQLVEQNRHTGLLLGEVKQETSVSQYGRLAHRRLNHPHWSLHDIRRTFTTMLNDLGVDPHVVEQLTGHQMPGMQRVYNHSRYLDAKRNALDMWTERLGILAGTHENVTTLPVARRK
1234145..1234891                   hypothetical protein; SFxv_1286                                                      N/A                 Shigellaflexneri2002017MKIEYTPERGRGFVRPGETGKPQNWGFSGIKKAAPKWSRLSEQITRCAVCVCDPKHKHGDDSRYQAGGQCNQSGSVRCHNCEVLSFDEYSLRYFSRAKEHGANRSDSCSFFLRRLFRAGDVFSVDSSLVIVCACKAMRRSTSHHGADSFYPLGSMPRCCNSLRIIRFIQAARESSPSCCCAFSIFSRKSGSKRNWNGGLPRLSFLCVDTLITPQVMYLCVVTHYTQSTQKAKPRTVGAVTGLLTNNVN
1234798..1235100                   hypothetical protein; SFxv_1287                                                      N/A                 Shigellaflexneri2002017MCSDTLHTINTKSKAPHCRSSNGASNQQRKLGAVMVAVNHIPHLVHTQTAFVWRFLALSAGESQIIHVTAWTEREARSRCPSGCVAVFAARIRQGETYAQ
1235256..1235456                   hypothetical protein; SFxv_1288                                                      N/A                 Shigellaflexneri2002017MTLKIFLLPIVKMGGVMRDDRFNSLKQEFSGVPDDAADALSSMPELIRAAFFLLSTREYKSTGLMY
1235526..1235759                   hypothetical protein; SFxv_1289                                                      N/A                 Shigellaflexneri2002017MRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSRIATALITLLEPVIMELQEIDLLHDRYKEQHTGE
1235765..1236064                   hypothetical protein; SFxv_1290                                                      N/A                 Shigellaflexneri2002017MKLKYSGLTASGNTHPKFTRGDIYRDQYGGMVTIKGVAERRITYRREGYEYDCVMPVYQFRRDFTLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK
1236310..1237809                   PHAGE_Entero_P4_NC_001609: DNA primase; SFxv_1292; phage(gi9627512)                  1.12e-104           Shigellaflexneri2002017MVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQMADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVVIYSEHRATFSKRVINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGRAQVVGSRLIVLADQPKYTGEGTGIKKITGGDPVEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRSKPLNVNDFGKAMKPAAKVYGHEYITRKVKGVTQTNAITTDECDAFL
1238098..1238376                   hypothetical protein; SFxv_1293                                                      N/A                 Shigellaflexneri2002017MHTSGKFNKSFKKRRDRTEPKYRALDMTEHALKVAIRTIDRHAGEGYAKAHPELISAFMTTTAANFATLTEREIAEAEQVTTINVKTGEVES
1238373..1238678                   hypothetical protein; SFxv_1295                                                      N/A                 Shigellaflexneri2002017MSEPKFGEKFYKHNGRITILQISAATPGWWVETDEGSSPVASWELCVLSYPDRDVYQDILPVISTDKGMKPVDIKNMGFQCVMLTEKMMEEMKKNNAGSLH
1238688..1238849                   hypothetical protein; SFxv_1296                                                      N/A                 Shigellaflexneri2002017MTAQIAAYGQLVGDPLVKQSSKGTPEPPTENYADLRNAVNRTYADMGLSKLAE
1240350..1240922                   PHAGE_Entero_IME_EF4_NC_023551: prohead protease; SFxv_1299; phage(gi589893040)      5.33e-36            Shigellaflexneri2002017MGEKIMKSMEIRSSEITTSGAGTLTGYVVRWDKLSELLWGEFYEKFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTGRDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGVELARRSLYEQHPEKMPRADNRRWWADLAGV
1240924..1242135                   PHAGE_Shigel_SfIV_NC_022749: portal protein; SFxv_1300; phage(gi557307529)           2.45e-47            Shigellaflexneri2002017MWPFRRKKEQRSMTLDEFMALAGTSNTGAGEYVSSGTAESLPAVMNAVTVISDAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRMMIRYCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNIRNYLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGEWLDGVKGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDIARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGIRYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAREREGLSPRDGGDEFSQAWKQEVKISEGEKPE
1242132..1242470                   PHAGE_Entero_HK97_NC_002167: putative head-tail adaptor; SFxv_1301; phage(gi9634168)     1.49e-34            Shigellaflexneri2002017MNIGRLRDRITIQTLKQTRDITGEILETWEDGHTLWASVNMVSSKEAISSGAELAIGTVRIWIRYRKDINATSRIKVSTGPLAGRVLNIIGQPLPDAARTRLEILCREGAEK
1242467..1242763                   PHAGE_Shigel_SfII_NC_021857: head-tail connector protein; SFxv_1302; phage(gi526244642)     9.40e-10            Shigellaflexneri2002017MTEELITLEEVKLHCRIDGDDEDQLISGYIAASLEACQIHIGRRFDDGLAFTPAIKIGCMMFIAHLYENRQIVADNAKTRVPMTIGALWTAYRDVGGY
1242991..1243203                   PHAGE_Xantho_Xop411_NC_009543: HNH endonuclease; SFxv_1303; phage(gi157325492)       6.64e-06            Shigellaflexneri2002017MVVDHIIPINGGDDVLFWPEWNHQPLCQACHNQKTKWLDPATKSKRAAGGFREEEERAANRNNWMYDADE
1243187..1243369                   hypothetical protein; SFxv_1304                                                      N/A                 Shigellaflexneri2002017MTLMNEREQNRLIRGLIRQRDAWKTQETGHKDKASGRAERITAKRLTDRDREVMECFRNR
1243440..1243751                   PHAGE_Salmon_ST64B_NC_004313: terminase small subunit; SFxv_1305; phage(gi23505446)     1.18e-14            Shigellaflexneri2002017MKQWREKSRQLAERGDLTPADWSNLELYCVNYSIYRKAVADLAARGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPPETEEEDELDRLE
1243735..1245396                   PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; SFxv_1306; phage(gi100002)      3.57e-100           Shigellaflexneri2002017MTAWNKYAEDVKTGKIPACKRLKQAVKRYFSDLKSPLYTFDREVVERFIAFSRVCPHVKGPMRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNAKSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDNARQMCLLSRPLRRRVNIQAHKVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLLFAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANPNIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTEEDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYRQWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEVEPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNKKKSPNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV
1245410..1245691                   hypothetical protein; SFxv_1307                                                      N/A                 Shigellaflexneri2002017MTEAEILRLIRRVSGISQQADEQTTQPDSVTAENYARVVAEVMRRDGIQLNDADMRDIRIRVLEMLAYNRRVELYREKEKITYHWKKPERLRR
1246387..1246407                   attR                                                                                 N/A                 CGGTGTAGTTAATGGTGTAGT
complement(1246488..1247948)       Virulence sensor protein phoQ; SFxv_1309                                             N/A                 Shigellaflexneri2002017MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFYTLAQWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE
complement(1247948..1248619)       Virulence transcriptional regulatory protein phoP; SFxv_1310                         N/A                 Shigellaflexneri2002017MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR

#### region 8 ####
1405422..1405434                   attL                                                                                 N/A                 GCCGGATGCGGCG
1409974..1410531                   PHAGE_Thermo_THSA_485A_NC_018264: transcriptional regulator, XRE family; SFxv_1477; phage(gi397912660)     6.34e-08            Shigellaflexneri2002017MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPTTF
1410681..1412153                   Aldehyde dehydrogenase; SFxv_1478                                                    N/A                 Shigellaflexneri2002017MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELALLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGVIAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLNVVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIVFADCPDLQKAASATAAGIFYNQGQVRIAGTRLLLEESIADEFLALLKQQAQNWQPGHPLDPATTMGTLIDSAHADSVHTFIREGEGKGQLLLDGRNAGLAAAIGPTIFVDVDPNASLSREEIFGPVLVVTRFTSEDQALQLANDSQYGLGAAVWTRDLSRAHRMSRRLKAGSVFVNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTSG
1412169..1413449                   putative Glycine/D-amino acid oxidases (deaminating); SFxv_1479                      N/A                 Shigellaflexneri2002017MTEHTSSYYAASANKYAPFDTLNESITCDVCVVGGGYTGLSSALHLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYSRDIDVIEKSYGMDTARMLGSMMFEGGEIIRERIKRYQIDCDYRPGGLFVAMNDKQLATLEEQKENWVRYGNKQLELLDVNAIRREVASDRYTGALLDHSGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVVRTANGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQVITTERLSEDLARSLIPKNYCVEDCNYLLDYYRLTADNRLLYGGGVVYGARNPDDVERLVVPKLLKTFPQLKGVKIDYRWTGNFLLTLSHMPQFGRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAFANLPHYPFPGGRTLRVPFTAMGAAYYSLRDRLGV
1413487..1414752                   PHAGE_Mycoba_Lukilu_NC_041901: chaperone for tail fiber formation; SFxv_1480; phage(gi100190)     2.10e-09            Shigellaflexneri2002017MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINTLAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGECGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALSD
complement(1414872..1415849)       Psp operon transcriptional activator; SFxv_1481                                      N/A                 Shigellaflexneri2002017MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEEAIAVSENTSLPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI
1416016..1416684                   phage shock protein A; SFxv_1482                                                     N/A                 Shigellaflexneri2002017MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMKQDNQ
1416738..1416962                   Phage shock protein; SFxv_1483                                                       N/A                 Shigellaflexneri2002017MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLAQLVDEAKRMRERIQALESILDAEHPNWRDR
1416962..1417321                   Phage shock protein C; SFxv_1484                                                     N/A                 Shigellaflexneri2002017MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREMERYVTSDTFTLRSRFRQL
1417318..1417551                   Phage shock protein; SFxv_1485                                                       N/A                 Shigellaflexneri2002017MRKVMNTRWQQAGQKVKLGFKLAGKLVLLTALRYGPAGVAGWAIKSVARRPLKMLLAVALEPLLSRAANKLAQRYKR
1417594..1417941                   Phage shock protein; SFxv_1486                                                       N/A                 Shigellaflexneri2002017MAIFIHRRTLTCLKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKELLSEMGYTHVENAGGLKDIAMPKVKG
1418153..1419283                   putative glycosidase; SFxv_1487                                                      N/A                 Shigellaflexneri2002017MKQKITDYMDEIYGGTFTATHLQKLVTRLESAKRLITQRRKKHWDESDVVLITYADQFHSNDLKPLPIFNQFYHQWLQSIFSHVHLLPFYPWSSDDGFSVIDYHQVASEAGEWQDIQQLGECSHLMFDFVCNHMSAKSEWFKNYLQQLPGFEDFFIAVDPKTDLSAVTLPRALPLLTPFQMDDNSTRHLWTTFSDDQIDLNYRSPEVLLAMVDVLLCYLEKGAEYVRLDAVGFMWKEPGTSCIHLEKTHLIIKLLRSIIDDVAPGTVIITETNVPHKDNIAYFGNGDDEAHMVYQFSLPPLVLHAVQKQNVEALCQWAQSLSLPSSKTTWFNFLASHDGIGLNPLRGLLPESEILALVEALQQEGALVGNAANLLI
complement(1419144..1419431)       putative integrase; SFxv_1488                                                        N/A                 Shigellaflexneri2002017MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYLLMHLPAVMPRPALIFRFLEASHAVGSTRCHRERRGS
1419506..1420009                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_1489; phage(gi557307573)        5.62e-108           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
1431551..1431563                   attR                                                                                 N/A                 GCCGGATGCGGCG

#### region 9 ####
1441039..1442235                   PROPHAGE_Escher_CFT073: transposase; SFxv_1511; phage(gi26248352)                    0.0                 Shigellaflexneri2002017MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIAALHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTFYTPQGS
1443669..1444151                   PHAGE_Burkho_phi1026b_NC_005284: gp58; SFxv_1514; phage(gi38707948)                  2.09e-08            Shigellaflexneri2002017MKREEIADLMAFVVVAEERSFTRAAARLSMVQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLLSVLGPILHDIDSALTSLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVLRCTGNSGYYHLFFF
complement(1444148..1444966)       PROPHAGE_Escher_CFT073: transposase insF; SFxv_1515; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1445819..1445831                   attL                                                                                 N/A                 GCTGGATTTGCCC
complement(1446010..1446738)       PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SFxv_1518; phage(gi24114950)     6.27e-175           Shigellaflexneri2002017MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDYTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKNDKA
1446262..1446693                   IS2 ORF; SFxv_1516                                                                   N/A                 Shigellaflexneri2002017MQCLTITAVQRERDTQSLSVITAELEPVRAPSLIAFFHGHSACMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
complement(1446696..1447061)       PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; SFxv_1519; phage(gi17546153)     9.81e-59            Shigellaflexneri2002017MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
1447255..1447893                   PHAGE_Salmon_SPN3UB_NC_019545: PrpO; SFxv_1520; phage(gi423262427)                   1.30e-24            Shigellaflexneri2002017MAGVLEGRLSGGTAAEFCNSAVVALQAAGLDVCREYPVPERGDGCGGRIDIVVTDRNGVRCGIELDRNSPRQKSLLKIGAVETGICVLRRSDIARHTEQGILVIGGAVRQKKFDPLSVDLPDWLSETLWHEWVQFRQALRKPIRTELGANGAIRELEKFRQQGFTPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPDSAIPPGFRG
1447900..1448646                   PHAGE_Salmon_SPN3UB_NC_019545: DNA replication protein DnaC; SFxv_1521; phage(gi423262428)     1.28e-100           Shigellaflexneri2002017MKNIATGGVLERIRRLTPPHVTAPFRTVAEWREWQLAEGQKRCEEINRLNRQLRVEKILNRSGIQPLHRKCSFANYRAQNDGQRHALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLMAKGRSVIIVTVSDVMSVLHESYDNGKSGEKFLQELCGVDLLVLDEIGMQRDTKNEQVVLNQIVDRRTASLRGVGMLTNINHAAMNTLLGERVMDRMVMNGGRWVNFNWESWRPNVSHSRVVK
1448661..1449083                   PHAGE_Shigel_Stx_NC_029120: LygF; SFxv_1522; phage(gi985761265)                      1.15e-65            Shigellaflexneri2002017MAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVGRLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDREIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL
1449084..1449497                   PHAGE_Entero_Tyrion_NC_031077: hypothetical protein; SFxv_1523; phage(gi100050)      8.08e-12            Shigellaflexneri2002017MKLAIRLQLPLAFASKERSMEIKPEDELSNIVLFPIKEDDPRNQVNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRLLRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE
complement(1449217..1449816)       PHAGE_Stx2_II_NC_004914: hypothetical protein; SFxv_1526; phage(gi32171093)          2.45e-28            Shigellaflexneri2002017MPYQLSLYGLILLCSVLNDAHTTSLYNSITGSIIFPIIQTKICGDIGVINTINRMRNRNSVVLLFRGYFFLNNVTIHYRPFGRSPDDLRVQKSLRLRIKFLTVLNLIIQFWILSPCVSALSRYAQSVSAFLYFSAFPVPPGAIALHHLPVWFLFLPQRASSQTAPQPHRRFYSGPDALFRQPVQRRDGNMVFPMAYKEN
1449810..1450175                   PHAGE_Entero_HK225_NC_019717: HNH endonuclease; SFxv_1525; phage(gi428782431)        3.06e-43            Shigellaflexneri2002017MALTKKQRAELRMKFGGRCAYCGCELGEKWHADHVKPVIRFDGNMLHQERDDISNMVPECHPCNLHKHCSSLEDYRRIISDGRREFLASGKGKALVRMGLVEMKSDPVVFWFEIYQEGATA
1450172..1450837                   PHAGE_Salmon_SPN3UB_NC_019545: putative Eaa protein; SFxv_1527; phage(gi423262432)     5.93e-07            Shigellaflexneri2002017MTTITKERLQWLANISGRDDIDDIDGGEIRELALIALASLEAEPVAECIVEDGGMCIDGFGEYVGHSLPDGMHELYAAPRMRQPDGWKAVAVAWKVTFTQVDQESNTFTAIYFYKAEVERWVRLHKACDFRADITPLYAAPAVPVAVNDDMAYAFHHALSDSSLGSDEIEEIKTGLRAAFANVTIQPEPIVPDEIGPNDSNTFDYVDGWNACRAAMLKGDK
1450837..1451202                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; SFxv_1528; phage(gi116222036)       2.20e-39            Shigellaflexneri2002017MINRTKLEHILEYARQQKCIGQLCKIPPGDMVEIVEMAMRKAGNSPVTLAGWISCSDAVPAEYCDVILLDDLGNVFPGSWDKVFCPTRGGNKMAFVDKDGVEVESSTHWMPLPEPPQEVNQ
1451600..1451812                   PHAGE_Entero_933W_NC_000924: protein MokW; SFxv_1529; phage(gi9632542)               2.22e-38            Shigellaflexneri2002017MSHKCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(1452318..1452821)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_1530; phage(gi557307573)        2.41e-110           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
1452935..1453246                   IS600 ORF2; SFxv_1531                                                                N/A                 Shigellaflexneri2002017MSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPVSIGINSGILHNGLNTHSTAPAENYDGAYTTGQTNLFRITSPGDAGELRFFASNQNR
1453149..1453748                   PHAGE_Salmon_SPN3UB_NC_019545: hypothetical protein; SFxv_1532; phage(gi423262437)     6.11e-69            Shigellaflexneri2002017MAHIQLVKQTSSGLLLPATPESCDFLHQIKIGEWIHADFKRVRNYAFHKRFFKLLQLGFDYWTPVGGAITPRERKLVSGFVDYLCESVGREHTPALSDAAEQYLNTVATCRTRDTALLKSFDAFREWVTIQAGFYTEHIYPDGSRGRRAKSIAFANMDETEFQQVYKSVLNVLWNWILFRKFSSPEEVENVAAQLLEFA
1453748..1454038                   PHAGE_Erwini_phiEt88_NC_015295: hypothetical protein; SFxv_1533; phage(gi327198620)     1.20e-41            Shigellaflexneri2002017MVDLRKAARGQMCTVRIPGYCNHNPETSVLAHYRLAGTCGTATKPHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL
1454035..1454589                   putative bacteriophage protein; SFxv_1534                                            N/A                 Shigellaflexneri2002017MIYPTNTGKSGEHLRLTTLESVWIQGKLRMWGRWSYIGGGKTGNMFNQLLASKKLTKTAVNEALRRMKKAGIEKPELEAFLREMINGKQKTWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKRKMAELLNDAHPEWCFRTCCSRVDVWLNLAEYMLYLPMRDAFSSGDLKTVC
1454742..1454915                   PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; SFxv_1535; phage(gi100057)     1.27e-05            Shigellaflexneri2002017MGEPKGSPVSVPGYANPAQFATSSIGVVGGDNFQMYGVIVMTTQISVETLSPITHNQ
1454977..1456116                   PROPHAGE_Escher_CFT073: transposase insF; SFxv_1536; phage(gi26249410)               0.0                 Shigellaflexneri2002017MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILNCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSCKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1456022..1456669                   PHAGE_Entero_VT2_Sakai_NC_000902: similar to antirepressor of bacteriophage P22; SFxv_1537; phage(gi9633431)     3.73e-62            Shigellaflexneri2002017MRFSTIVSVVTLVWGISPRQPSGKNIIRWLLKKRTNGSVRYCQYTSQIPVITTELLAQLYGTEPVRIRQNHHENKVRFVEGKHFFKVVGNDLKELRVALNYSQNPVSPKARSLILWTERGAARHGKMLETDQAWDVFEKLEDCYFSQRDPSTPVSCQKSYDTRVLCYQRGGVTVSTIQLRDDDIVISLESWLELARANGWFVVRRDKLVERLMQL
1456878..1456951                   tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTTGGTCAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCA
1456956..1457029                   tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTGCGAGGTTCGAGTCCTCGGTGGTGGG
1457035..1457107                   tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCA
1457114..1457185                   tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCT
1457303..1458907                   PROPHAGE_Escher_Sakai: putative integrase; SFxv_1538; phage(gi15834496)              8.97e-22            Shigellaflexneri2002017MIQLSSSHKLPAVYYLYQRNGVYYFRLRVRQSNNDRMTSISLRTKDRRTAMAYSRHIKAALKAIHADRPNATYEEMREHLKDIAECELSMGRSDLFEPDMRDIYRDQYGELGESLTDALASEPLSIDQHRYINEALKVLKACMRRIEAGDSQPLIDYVDLFNDIDRQDNQADSVSLSVNAPEVKPEVTPSITIASLFEQYEAENYQNWKPATLRENKASHAALIEIFDHLGLNADANRADMLRVRDVLQQLPRNRKQRFKDVPLADLLSREDKTDCLDVVTINNKYLIKMAAVFRWAVRNDLIKKNMTEGLELKVPQRKASGARNAFSTEQVGQLLVAAKAYSQKTSGKPYHYYVTALAAITGARLNEIAQLQVKDVRTTEAGTVYIHINEDDSSLPGKSIKNAHSDRCVPLVDGAYGFILADFMALVETRRGADGDDAMVFDGLRLMKNGYGEQVSKWFNRTLLPKVLVDRSGLAFHSFRHTVAAQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVDRLVNVMADVYKET
1460538..1460897                   PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; SFxv_1539; phage(gi41057343)     1.57e-84            Shigellaflexneri2002017MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
1461275..1461457                   PHAGE_Escher_C119_NC_042046: hypothetical protein; SFxv_1540; phage(gi100023)        1.76e-09            Shigellaflexneri2002017MSQQPQQPQQEISIINLDQLVSMTSVEIAELTGKEHRNVLRDIRKMLEELNAGNAANLLI
1461680..1462183                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_1541; phage(gi557307573)        2.10e-109           Shigellaflexneri2002017MSCQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
1462286..1463104                   PROPHAGE_Escher_CFT073: transposase insF; SFxv_1542; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA
1463132..1463500                   PHAGE_Entero_SfMu_NC_027382: tail fiber protein; SFxv_1543; phage(gi849255282)       5.52e-24            Shigellaflexneri2002017MPVHLSNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGT
1463697..1464068                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber assembly protein; SFxv_1544; phage(gi18249919)     3.95e-68            Shigellaflexneri2002017MVWVGKDVTGIEPRNASVIEVPDITANRRITAPAYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
1464092..1465360                   PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; SFxv_1545; phage(gi18249920)     7.68e-109           Shigellaflexneri2002017MSVVISGALTDGAGIPMSGYHIILKSRVNPPEVVMNTVADVMTGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYRYWPISRLTDWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
complement(1466135..1466992)       Inner membrane permease; SFxv_1546                                                   N/A                 Shigellaflexneri2002017MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMGDAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGMFAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFSFDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRFHIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNAHTQDLLSPN
complement(1466989..1467846)       Inner membrane permease; SFxv_1547                                                   N/A                 Shigellaflexneri2002017MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFFGLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFFDENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRRAHKALEDRS
complement(1467843..1468670)       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; SFxv_1548; phage(gi371496158)        9.85e-14            Shigellaflexneri2002017MMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGSGKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQGDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGTVLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR
1478091..1478103                   attR                                                                                 N/A                 GCTGGATTTGCCC

#### region 10 ####
1456970..1456982                   attL                                                                                 N/A                 TCCGGATAGAGCA
complement(1470016..1470669)       PHAGE_Entero_BP_4795_NC_004813: putative integrase; SFxv_1550; phage(gi157165986)     6.07e-74            Shigellaflexneri2002017MAALPDPLSKTEFNALMESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVALLQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVSSLGTRWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNARLS
1470905..1471408                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_1551; phage(gi557307573)        4.55e-109           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(1471597..1471764)       putative excisionase; SFxv_1552                                                      N/A                 Shigellaflexneri2002017MLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYNYPKINQFIKDS
complement(1471812..1472480)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; SFxv_1553; phage(gi157166067)     1.90e-159           Shigellaflexneri2002017MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(1472695..1473021)       PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; SFxv_1555; phage(gi157166066)     1.33e-73            Shigellaflexneri2002017MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
complement(1473096..1474193)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; SFxv_1556; phage(gi401817570)     0.0                 Shigellaflexneri2002017MALFQRAINTQAYLKAGIMGFAGDGKTYTASELAIGLVMLMRQRGIEAGNRPVMFLDTETGSDWVKPRFDAENIELFTAKTRSFVDLLEAINEAESSGSVMIIDSISHFWTGLCDEYARRRNRKRGLEFSDWAWLKQEWRRFTDRFVNSQAHIIMCGRAGYEYDFFEGDDGKRQLAKTGIKMKAETETGYEPSIRIQMEKQMNIETGQVWRTARILKDRSTRIDGQVFSNPTFKNFLPHIESLNLGGEHPGIDTSRDNSELFANDGTPTWLKEKRAKEIALDEIIELLNKHHGGTSNDAKRAKADLLEKTFTSRSWERIKGMDWPTIKAGRNALWIELEGVEYAFPDPQTQNETQQAGYDENIPV
complement(1474199..1474519)       PHAGE_Entero_Min27_NC_010237: host-nuclease inhibitor protein Gam; SFxv_1557; phage(gi170783625)     2.18e-53            Shigellaflexneri2002017MSVKLRLPQSAYPIFDRIEEMAWARHYQQIVREEKETELADDLEKGLPQHLFESLCIDHLQRHGANKQAISHAFDDDVEFQERMAEHIRYMAETIAHHQVDIDLED
1474896..1475714                   PROPHAGE_Escher_CFT073: transposase insF; SFxv_1558; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSCKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1475762..1477186)       PHAGE_Shigel_POCJ13_NC_025434: exodeoxyribonuclease VIII; SFxv_1559; phage(gi725949707)     0.0                 Shigellaflexneri2002017MNTDKQVYPLYYEAKNDKVRKRLGIKGGFYWAEAKKLSIAISRGAVAIDDAGYDEDDFKKPVRVNLPVVDDLPPEGVFDTEFCNRYEKGGEDGITMVFIASSPSVQDKPASTDNTNVNGEDMTEIEENMLLPVSGQELPIRWLAQHGSEKPVTHVSRDELQALHIARDEELPAVTALAVSHKTSLLDPLEIRDLHKLVRDTDRVFPNPGNSSLGLMTAFFEAYMDADYTDRGLLTKEWMKGNRVSRITRTASGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARSMDVDIYNLHPAHAKRVEEIIAENKPPFSVFRDKFITMPGGMDYSRAIVVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKTQPSGAMADEQATAETMEPDATEHHQNTQPLDAQSQVNSVDEKYQELRAELHEARKNIPPKNPVDADKLLAALR
complement(1477286..1477561)       putative bacteriophage protein; SFxv_1560                                            N/A                 Shigellaflexneri2002017MITSYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDIDGPSGNVKTLNDGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI
complement(1477636..1477806)       PHAGE_Phage_Gifsy_1_NC_010392: hypothetical protein; SFxv_1561; phage(gi169257260)     1.01e-06            Shigellaflexneri2002017MTKKIKCAYHLCNKEIEESKIITRPLHFMRGVIPTTEMKKYCSEICAEKDQMAHEL
complement(1477806..1478027)       PHAGE_Shigel_Stx_NC_029120: Kil protein; SFxv_1562; phage(gi985761255)               2.10e-46            Shigellaflexneri2002017MIAHHFGTDEIPRQCVTPGDYILHEGRTYIASANNIKKRKLYIRSLTTKTCISDCMIKVFLGRDGLPVKAESW
complement(1478104..1479009)       PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SFxv_1565; phage(gi24114950)     0.0                 Shigellaflexneri2002017MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDYTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
1478533..1478964                   putative IS2 ORF; SFxv_1563                                                          N/A                 Shigellaflexneri2002017MQCLTITAVQRERDTQSLSVITAELEPVRAPSLIAFFHGHSACMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
complement(1478967..1479377)       PROPHAGE_Escher_CFT073: transposase insC; SFxv_1566; phage(gi26249447)               6.34e-67            Shigellaflexneri2002017MIVLIPVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
complement(1479630..1480262)       PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; SFxv_1567; phage(gi428782357)     7.86e-73            Shigellaflexneri2002017MLNVAIENQNGWNYSASAPHKTGAGRGNPNVTRAHSRAEAVFLCVMHSSIQIMVGCAGQSQDWPGSRVTGISTPVRLTTLMVVENLGGELINLSLEDAIMATIPALSHPDVTIENGRAVTTSVAVAEFFHKRHDNVLRAIANTECSPEFNALNFEDVTYTDTKGEKRPMYQITKNGFVFLVMGFTGKKAAAFKEAYIADVRPHGGRTAPE
1481986..1482609                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; SFxv_1568; phage(gi730985066)      1.44e-41            Shigellaflexneri2002017MLMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKPLTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
1490699..1490711                   attR                                                                                 N/A                 TCCGGATAGAGCA

#### region 11 ####
1623559..1623571                   attL                                                                                 N/A                 GCACTGCCGGACA
complement(1629354..1629569)       putative integrase; SFxv_1725                                                        N/A                 Shigellaflexneri2002017MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPGCRLVSAYKLLE
1629644..1630201                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_1726; phage(gi557307573)        4.86e-105           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKTLSVSWSHYQKKQQRILHRSR
1630251..1631069                   PROPHAGE_Escher_CFT073: transposase insF; SFxv_1727; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(1631094..1631273)       PHAGE_Entero_933W_NC_000924: protein S; SFxv_1728; phage(gi9632510)                  1.14e-31            Shigellaflexneri2002017MDQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGSLLFGLLTYLTEVYWQ
complement(1631423..1631584)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; SFxv_1729; phage(gi116221995)       5.74e-20            Shigellaflexneri2002017MILRHRTGPAFQAIKDSLAVGLNALTLTDITKNATYGVEIESLVLEINAPASS
1632029..1632364                   PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; SFxv_1730; phage(gi209447168)     2.66e-54            Shigellaflexneri2002017MKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFTLTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQICPYGLKQQSP
complement(1633279..1633352)       tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGAATCCAGTACAGCGCG
complement(1633457..1633529)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCA
complement(1633674..1634495)       PHAGE_Entero_HK225_NC_019717: late gene regulator Q; SFxv_1731; phage(gi428782441)     1.86e-111           Shigellaflexneri2002017MKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNRAEMGFSAFLGKMGISMNDRARATELLADYALSRCDRVAALRKLPAEIKPVVMRIMASYAFEDYARSAASKKQCPCCYGEKFIESIVFTNKIQYPDGKPPVWAKCTKGVYPFYWEEWKKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGYERLPSTEAFNAICEVTNQITRASWEKTVKKFYDALVTRFDIEEAWAERQLKKVTR
complement(1634510..1634866)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; SFxv_1732; phage(gi985761276)     2.96e-46            Shigellaflexneri2002017MLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQRLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQPVSGGRLGVKIYPIMH
complement(1634879..1635928)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; SFxv_1733; phage(gi428782365)     2.41e-135           Shigellaflexneri2002017MRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPQQEKTVVSIAVDPESPESFMKRPKRRRWVNEKYKRWVKTQPCACCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLIFRFLDHAFATGVLG
complement(1636275..1636526)       hypothetical protein; SFxv_1734                                                      N/A                 Shigellaflexneri2002017MMNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKNGAALINFVDARVTDGFILRDGEFVTSLQALKEIGIKAGFSAFSEE
complement(1636589..1636705)       hypothetical protein; SFxv_1735                                                      N/A                 Shigellaflexneri2002017MAGILNAPALNPLRRFFVFIFNAFEVLDGAGIESKILK
complement(1636744..1636899)       PHAGE_Entero_933W_NC_000924: host killer protein; SFxv_1736; phage(gi9632541)        1.17e-25            Shigellaflexneri2002017MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(1636971..1637258)       Toxin relE; SFxv_1737                                                                N/A                 Shigellaflexneri2002017MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL
complement(1637258..1637497)       Antitoxin RelB; SFxv_1738                                                            N/A                 Shigellaflexneri2002017MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
1637549..1637827                   hypothetical protein; SFxv_1738a                                                     N/A                 Shigellaflexneri2002017MLRASHEGSQKVVVRTVITVRFVPGAAIAKSILYCAGQLFFKESGHHLTGTDTIYFVTVRLHMHNSTYSSIFCFSMSVRCTGNSGHYHLFFF
complement(1637824..1638642)       PROPHAGE_Escher_CFT073: transposase insF; SFxv_1739; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA
1639051..1640061                   PHAGE_Burkho_phi1026b_NC_005284: gp59; SFxv_1740; phage(gi38707949)                  1.54e-11            Shigellaflexneri2002017MLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL
1649643..1649655                   attR                                                                                 N/A                 GCACTGCCGGACA

#### region 12 ####
1974339..1976090                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; SFxv_2106; phage(gi169257209)     6.92e-09            Shigellaflexneri2002017MLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEEQRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLTQLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPELLETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLPENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQSLQRLTSSPDYHGPQIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(1977195..1978298)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; SFxv_2107; phage(gi18249920)     2.36e-69            Shigellaflexneri2002017MTARWFRRAFCGVNMAVKISGVLKDGAGKPVVNCAIELRARRTSPTVVAHVVATCVTDNNGAYVIEAEPGYYEVALHCNGWQPTRVGDIDVAPTDAPGTLNAFLNAPKDGDLRPEVMKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYRYWPISRLTG
complement(1978320..1978919)       PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; SFxv_2108; phage(gi148609401)     4.21e-132           Shigellaflexneri2002017MRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPGSDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGLSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAWGAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF
complement(1978987..1982466)       PHAGE_Entero_cdtI_NC_009514: putative tail tip assembly protein; SFxv_2109; phage(gi148609400)     0.0                 Shigellaflexneri2002017MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKSVLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITRTITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTTSQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALVGVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCLWDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRKAWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSALKDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLDREITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTLRQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHLTAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQLALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDPTVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKSAFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNPPAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVGKPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLIVKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLVVVMKKSTAGISIS
complement(1982527..1983129)       PHAGE_Entero_cdtI_NC_009514: putative tail component; SFxv_2110; phage(gi148609399)     2.45e-119           Shigellaflexneri2002017MARICLYGDLQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVVSQEISTADEGDGGQVVVIGR
complement(1983066..1983878)       PHAGE_Entero_cdtI_NC_009514: putative tail protein; SFxv_2111; phage(gi148609398)     2.24e-167           Shigellaflexneri2002017MSCATIPVISAVSFPSINFLSKSMTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPEERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV
complement(1983814..1984512)       PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; SFxv_2112; phage(gi148609397)     2.42e-155           Shigellaflexneri2002017MQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNEKGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGTVVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDGAVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNTGNFGGFLSINKLSQ
complement(1984841..1987882)       PHAGE_Entero_cdtI_NC_009514: putative tail protein; SFxv_2113; phage(gi148609395)     0.0                 Shigellaflexneri2002017MDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQRFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQKMREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQDYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGVSSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRAGWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVGQLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDTINQFKRLKDDPVNAAKALDNALHFLNATQLEQIRVLGEQGRSSDAARIAMSALAEETGKRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYPWTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNETEAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYSQQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKNELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGDKQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKRYWQELEVAQGDWKNGAMRAFQNFTADADNAAGTAEQMFTVAFSSAGNALATFCTTGKLNFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGSGMVMFAPQYNIEINNDGTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR
complement(1987854..1988183)       PHAGE_Entero_cdtI_NC_009514: putative minor tail protein; SFxv_2114; phage(gi148609394)     2.23e-74            Shigellaflexneri2002017MQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH
complement(1988192..1988596)       PHAGE_Entero_cdtI_NC_009514: putative tail component; SFxv_2115; phage(gi148609393)     4.57e-85            Shigellaflexneri2002017MHPENMMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAERVLSLSGMGTIENAGDDDHEALTPEKS
complement(1988637..1989383)       PHAGE_Entero_cdtI_NC_009514: putative major tail subunit; SFxv_2116; phage(gi148609392)     2.88e-170           Shigellaflexneri2002017MVMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKDLQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKGVKQGSVSIVGMTSDGEFVAVAAVTVSAP
complement(1989388..1989789)       PHAGE_Entero_cdtI_NC_009514: putative tail component; SFxv_2117; phage(gi148609391)     9.34e-93            Shigellaflexneri2002017MNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVWLSDAQYTGKMTDEDDWQAVLHIAVFIRAQAPDSELDMWMESTIFPALNDVPALSGLIDTLNPLGFNYQRDNEMATWAMAEITYQITYTN
complement(1989786..1990376)       PHAGE_Entero_cdtI_NC_009514: putative tail component; SFxv_2118; phage(gi148609390)     1.02e-103           Shigellaflexneri2002017MKGLENAIRNLNSLDTRMVPQASAWAINRVAQKAVSVATRQVAGNTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNPPAIKLNTTRRRAGEGLRVGKYFFRGAFVQQLANGRWHVLRCLPEARFATGHDHQGRLRKNRLPVEVVKIPLSGPLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK
complement(1990363..1990734)       PHAGE_Entero_lambda_NC_001416: head-tail joining protein; SFxv_2119; phage(gi9626253)     1.28e-35            Shigellaflexneri2002017MADFDNLFDVALDLADKAIIRNMGIRAVITSGRLKGIMISGVFDDPENISLVAGGVRIEDSLPSLFVKTADILRLCRNDSLMIGRESFCVDRITPDDGGCSYIRLRREGLPGNVRAGRYYEGA
complement(1990746..1991147)       PHAGE_Entero_DE3_NC_042057: sliding clamp DNA polymerase; SFxv_2120; phage(gi100042)     1.78e-48            Shigellaflexneri2002017MAKKDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELANMDDTDIRDKSAHPENALTGHENEVISAQPETVIQNMDDLVTVVALVTLHTDALHATRDEPLAFVPPGMAFRVFAGVAAGMTERGLARMQ
1991411..1992607                   PROPHAGE_Escher_CFT073: transposase; SFxv_2121; phage(gi26248352)                    0.0                 Shigellaflexneri2002017MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTFYTPQGS
complement(1993310..1993381)       tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCT
complement(1993388..1993460)       tRNA                                                                                 N/A                 GCCGACTTAGCTCAGCAGGCAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCA
complement(1993466..1993539)       tRNA                                                                                 N/A                 CCACCACTAGCTCATCCGGATAGAGCATCAACCTTCTAAGTTGACGGTCCGAGGTTCGAGTCCTCGGTGGTGGG
complement(1993544..1993616)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAGTCCAGCAAGGGCCA
complement(1993793..1994482)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; SFxv_2122; phage(gi169257244)     1.55e-97            Shigellaflexneri2002017MNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGASIPLVSQVAFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQITITHWAWEEFKAHSGTRKIAEKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTGHWVVMKHIFHRLDSEALLFVMRTRSEQKAAFSKQSIAKVD
complement(1994479..1994838)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; SFxv_2123; phage(gi985761276)     2.25e-52            Shigellaflexneri2002017MRHEFILPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQRLKLSLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDETNIVRGLPVPGGRLGIKITELECA
complement(1994838..1995026)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; SFxv_2124; phage(gi18249884)     8.29e-25            Shigellaflexneri2002017MPFYFRKECPLNSGYLNMVPALRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEVLR
1995219..1996181                   PROPHAGE_Escher_CFT073: transposase insF; SFxv_2125; phage(gi26249410)               0.0                 Shigellaflexneri2002017MAELESEILQLRKALNEARLERDILNCTGVAEKYALIEQWRQQFPIEAMCQVFGVSRSGYYNWVQHEPSDREQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIAGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
1996679..1997506                   PHAGE_Entero_phiP27_NC_003356: putative serine protease; SFxv_2127; phage(gi18249869)     0.0                 Shigellaflexneri2002017MKKVIPALALVLLTTGLVGCDRVEPGNVGIKVNKLGDDKGVGEVVGVGRYWTGWNTEVYIFPTFKQMKTYDEPFSFQMSDGTTIGYHIGVAYKVDPSKVTTVFQTYRKGVDDITDTDLRQKIADALNRLASKMTTDKFIDGGKSELLDAALKDIQEEMTPIGIQVMSLSYVGKPEYPPTVIDSINAKVTANQKTLQCEQEVKQREAEANMLRAEAAGQADAIRTKAQAEADAIRLRGEALRQNPNVMELEAINKWNGTLPQYMTSGANTPFIQVK
1997550..1998299                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; SFxv_2128; phage(gi18249878)     9.74e-70            Shigellaflexneri2002017MNTVTINNKQFPVIEYRGQRVVTLAMIDEVHQRPEGTARAAFNRNREHFISGVDYAELGADVIRTDLPEGTFSKFAPSGIVLFESGYLMLTKPFNDALAWQVQRELVNSYFRTRTPLTEIEMIAAIAADAVRQQKRLNHVEEQLETVTEAVETIKRGNMRAGYVGYRQVVAKSGMSDTKCRNLVNAYQIPTDTHEFMTPDGLLSRRAIVELEPFMAAFHQMMSEADPRGTRWYHPKMGLFQVIGWEDKA
1998296..1998865                   PHAGE_Shewan_1/41_NC_025458: DNA polymerase III beta subunit; SFxv_2129; phage(gi712915574)     4.63e-34            Shigellaflexneri2002017MIIQSKLIRAALVCAAKNDVRYYLNGLHITPKHIEATNGSVALRMAHGIRTKKNIIVQFEGGVPAKAETTELIFSKEPIAVHRDQFQRRLSITGIKLVDGCFPDLDRIIPKKFDRCTHPVLQAGYLSYPEKMFGRERKFIPVQLRPSGDGQAVRIQFDSIINSMYGNPEFVVMPCRDHGDFNVAQEHPE
1998989..1999231                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; SFxv_2130; phage(gi157165989)     9.82e-44            Shigellaflexneri2002017MFALIQRGQIYTDRAGYPVEITRSTEHSVFFRRMDGRTGRVRIGEFSSLFEHIDHLEYHKILAETEQEKHLKKLRAMQRK
1999235..1999381                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; SFxv_2131; phage(gi157165988)     2.46e-25            Shigellaflexneri2002017MNKAFELWVHQRYGNHYDLTRDVDGFYCREIVKRMFEVWCHCRGLSVV
complement(1999562..2000401)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; SFxv_2132; phage(gi41057343)     0.0                 Shigellaflexneri2002017MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
2000960..2001310                   hypothetical protein; SFxv_2133                                                      N/A                 Shigellaflexneri2002017MLILDSRPVHASRPHSEAIRDAQRKKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQAPELVHTLWEDLRKTLPEIGAVPAIPQQSSLF
2001405..2001758                   Inner membrane protein yecN; SFxv_2134                                               N/A                 Shigellaflexneri2002017MKFSFDVVRLRMQYRVAYGDGGFSELQSAICIHGNAVEYIPIAIVLMLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLWYMPWELVFSLR
2001799..2002542                   PHAGE_Staphy_SPbeta_like_NC_029119: tRNA (cmo5U34)-methyltransferase; SFxv_2135; phage(gi985761180)     1.17e-36            Shigellaflexneri2002017MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAEDAA
2002539..2003510                   tRNA (mo5U34)-methyltransferase; SFxv_2136                                           N/A                 Shigellaflexneri2002017MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSNTVEFLPEIKPYRLDLLHSVTAESEEPLSTGQIKRIETLMRNLMPWRKGPFSLYGVNIDTEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVNEGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRIVDVCVTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPKRAVLIARKP
complement(2003675..2006122)       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; SFxv_2137; phage(gi100132)       2.02e-65            Shigellaflexneri2002017MIREEVMALTRREFIKHSGIAAGALVVTSAAPLPAWAEEKGGKILTAGRWGAMSVEVKDGKIVSSTGALAKTIPNSLQSTAADQVHTTARIQHPMVRKSYLDNPLQPAKGRGEDTYVQVSWEQALKLIHEQHERIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQRYMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQASWPLILENSQVVVLWGMNPLNTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEFFGDNATWIAPNMGTDVALMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPKSAVWTAEITGVPEAQIVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYSNGGNPTRVGGVLPEMSAAIAGQASEAADDGGMTAIPVARIVDALENPGGKYQHNGKEQTYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKHADIVLPITTSFERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDEMAWLKFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRRSEKNEQYVRYGDFRADPVKNALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTAHPAHRLHSQLNYAELRKKYAVADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIKKGVVCVHEGAWPDLENGLCKNGSANVLTADIPSSQRANACAGNSALVYIEKYTGNAPKLTAFDKPAVQA

#### region 13 ####
2088371..2088382                   attL                                                                                 N/A                 ATGCCTGCCAGT
2097187..2097199                   attL                                                                                 N/A                 ATGGCTTATGAAA
complement(2100820..2101089)       PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; SFxv_2254; phage(gi428782810)     2.00e-25            Shigellaflexneri2002017MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
2101146..2101814                   hypothetical protein; SFxv_2255                                                      N/A                 Shigellaflexneri2002017MVKLMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEHLLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHKISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATILGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSASGKK
2102130..2103773                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; SFxv_2256; phage(gi169257209)     3.38e-05            Shigellaflexneri2002017MLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(2103953..2104330)       PHAGE_Escher_Av_05_NC_025830: tail fiber protein; SFxv_2257; phage(gi730985066)      1.30e-17            Shigellaflexneri2002017MTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE
complement(2104473..2105291)       PROPHAGE_Escher_CFT073: transposase insF; SFxv_2258; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDKRLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQLPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLGHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQIAA
2105582..2106085                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_2259; phage(gi557307573)        2.41e-110           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
complement(2106178..2106660)       hypothetical protein; SFxv_2260                                                      N/A                 Shigellaflexneri2002017MIKPFLMTVAILTSCCAQAKILTNEEIVSRFISNVKTSADNDVDLDTDGFRQLRISCPSPSASGAIILRKASYEFGKSIGVFDFANNASPATMTFLIPIYKDDDFDSDTVGFTFAFKMPRGQFFVDVKENGNIRAGVNVNGESGVTYENCKLNMKDINDD
complement(2106728..2108677)       PHAGE_Shigel_SfIV_NC_022749: tail tape measure protein; SFxv_2261; phage(gi557307539)     0.0                 Shigellaflexneri2002017MADSFQLKAIITAVDKVSAPLKGMQRQLKGFKKEFASLSLGAAGAGTAVLGALALPVKSAIALESKMADVRKVVDGLDTPEAFKAMTEQVRDLSTELPMSAEGIAEIVAAGGQAGIARDELMQFTDDAEKMGVAFDTTAEESGQMMAQWRTAFKLTQGEVAGLADKINYLGNTGPASAKKISDVVTRIGPLGSVAGVASGEIAAMGATIAGMGVESEIAATGIKNFMLSLTARDSATKSQKKVLRSLRISPKKLAADMQKDARGAMLHVLDSLAKVPKEKQAAVLKALFGKESLGAIAPLLTNLDLLRTNFNRVADAQQYGGSMQKEYAARAATTENQLLLLQNQINAISSTLGETFLPSLNEGIKEMKPFLEEVRTFVRENPEVVKTIAKTGAALLTMGVAIGTLTRITKIMGSVMNMTPAKGLIALLVGGAYLIIDNWETVGPVVKKVWQEVDQVVRAMGGWEQAVKTIATVSALYIGVKAVASIRAATVAQNQWTTAAGKTGLKLKGLGKISLIGGLLELGMMAQEFEKEHPWLVKNFVADALNSGFGLNDKFDEWGKQFHDFVYDMTGWQMPRGDGYLSPDKRYTPNVSLERNQLLSLASSPATRSELKVTFDNAPPGMRVIDLPKTGDPFMKITHDVGYSPFKR
complement(2108762..2109097)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SFxv_2262; phage(gi557307538)     1.35e-50            Shigellaflexneri2002017MAMNVTEIVLKKPVTAHNEMLHVLELREPTYDEIEALGFPFIISGEGSIKLDSQVALKYIPLLAGIPCSSAAQMAKLDIFKTSMQILRFFTQSETGSTSGNDSTMLPGSGN
complement(2109097..2109453)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SFxv_2263; phage(gi557307537)     8.30e-70            Shigellaflexneri2002017MAKIAGTCFFKVDGQQLSLTGGIEVPMNTNVRDDIVGMAGDVDYKETWRSPYVKGTFKVPKNFPVDKITTSDQMTITAELANGMVYVLSAAWLHGEANHNAEEGTADLEFHGEEGGYQ
complement(2109453..2110949)       PHAGE_Shigel_SfIV_NC_022749: tail sheath protein; SFxv_2264; phage(gi557307536)      0.0                 Shigellaflexneri2002017MTISFNTVPSNTLVPLFYAEMNNSAANTAVTSAPALLIGHASNDAAIEVNSLVLMPSADYARQICGAGSQLARMVEVYRQTDPFGELYVIAVPEARGAAATVRVTVAGEAEESGTLSLYVGRSRVQVPVVNGDDATAVATAIKEAVNGVITLPFTASSDAGVVTLTARHKGLYGNELPVCLNYYGSGGGEILPAGLRVVTEVGAAGSGAPDLTAAVAAMGDEAFDFIGLPFNDAASINMMMTEMNDSSGRWSYARQLYGHVYTAKLGTLSELVGAGDMHNQQHITLAGYEKETQSPVDELVASRLAREAVFIRNDPARPTQTGELVGMLPAPKGKRFIMTEQQTLLSHGVATAYVEGGTLQIQRSVTTYKKNAYGVADNSYLDSETLHTSAYVLRKLKSVITSKYGRHKLANDGTRFGPGQAIVTPAVIKGELLATYRQMERAGIVEKYDLFKQYLIVERDADNPNRLNTLFPPDYVNQLRVFAVVNQFRLQYSEESA
complement(2111117..2111473)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SFxv_2265; phage(gi557307535)     2.25e-45            Shigellaflexneri2002017MPVHLNERDEKGQWAAYDAVHDVRRELWKALLGWMPDPQGGEIVYVGGTLLDLNRYELYYQFDFTAKYEITEEDTRQAEDVNALPDLSLLSIDVDYIDPGTGPDGDIEHHLEMRFPQN
complement(2111501..2112319)       PROPHAGE_Escher_CFT073: transposase insF; SFxv_2266; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA
complement(2112714..2113535)       PHAGE_Stx2_c_1717_NC_011357: transposase; SFxv_2267; phage(gi209447153)              1.60e-68            Shigellaflexneri2002017MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQLDRLRRMLFGQSSEKERHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSPPSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQLDIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIPLYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTLR
complement(2113532..2113882)       PHAGE_Stx2_c_1717_NC_011357: transposase; SFxv_2268; phage(gi209447152)              2.77e-33            Shigellaflexneri2002017MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIFVFRGRSGKMMKILWADRDGLCLFAKRLAGDPGRESAPDASSVIHATGGDRVATSQTDRTAWHPDITRDKTRE
complement(2113879..2114553)       PHAGE_Stx2_c_1717_NC_011357: truncated transposase; SFxv_2269; phage(gi209447151)     2.29e-09            Shigellaflexneri2002017MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTIHTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSREFKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALTDTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIREMKGGIR
complement(2114652..2114867)       PHAGE_Entero_VT2phi_272_NC_028656: holin; SFxv_2270; phage(gi966197762)              5.66e-35            Shigellaflexneri2002017MKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGSLVLGFLTYLTNLYFKIREDKRKAARGE
complement(2115163..2115234)       tRNA                                                                                 N/A                 GCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATTCCCGCTGCCCGCT
complement(2115241..2115313)       tRNA                                                                                 N/A                 GCCGACTTGGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCA
complement(2115316..2115392)       tRNA                                                                                 N/A                 CCGCCACTAGCTCATCAGGAAAGAGCGTCAACCCTTTAAGTTGAGTGTGCGAGGTTCGAGTCCCCGGTGGCGGTCCA
complement(2115397..2115469)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCA
complement(2115668..2116351)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage antiterminator protein Q; SFxv_2271; phage(gi169257244)     5.29e-102           Shigellaflexneri2002017MNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRRKKIRYRDEVTGKMITRDNPPIPGKQSLAKGTSIPLVSPVEFSTSSWRRAVLSLEEHYKAWLLWCYSGSICWEYQIAITQWAWNEFNAQSGTRKIAGKTQERLKKLIWLAAQAVKAELFGGEGYEYQELALLAGVTTKNWSKTFTRHWVAMKHIFHRLDSEALLFVMRTRSKKRRHFQSKVLQK
complement(2116715..2117773)       PHAGE_Shigel_SfIV_NC_022749: hypothetical protein; SFxv_2274; phage(gi557307571)     4.25e-110           Shigellaflexneri2002017MRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPPQEETVVSIAVDPESPAQYLQRQKPQREEMPVYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTKADDLFVIPLCRKCHNELHAGVKDFEEKHGSQLLLLIRFLMHARNSGVLKWKA
complement(2117775..2118053)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; SFxv_2275; phage(gi401817580)     3.96e-12            Shigellaflexneri2002017MAHDTKFYNSDNSAAPASRHGRRSHAFKSDGYQHDPCTEEQAEWLIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR
complement(2118221..2118433)       PHAGE_Entero_933W_NC_000924: protein MokW; SFxv_2276; phage(gi9632542)               5.94e-41            Shigellaflexneri2002017MLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPEE
complement(2118636..2118854)       hypothetical protein; SFxv_2277                                                      N/A                 Shigellaflexneri2002017MFKCYCTLIVGGIMKNALQFLFVAFWLFASCMPIIFTARYMEKIDVLILMFGHINALFLGVFMAVMCIEYWR
complement(2119028..2119450)       PHAGE_Escher_Av_05_NC_025830: hypothetical protein; SFxv_2278; phage(gi730985110)     4.66e-32            Shigellaflexneri2002017MKMTELTKEQLIEEAKLKIAITKCHPNSGMARVEGELFKIARASLEAEPIAWRYRYVKKGVMDSQGELWVGDWKYVPKKEDCNDRPNYEIQALFTAPPVPVTSEELVKAVHFYEQLKRENPPASGNQINGLTMSVKRPAN
2119489..2119611                   hypothetical protein; SFxv_2279                                                      N/A                 Shigellaflexneri2002017MENGLPFYTNRSGKPIVSRDLFTCNKTLPPREVEPNFGAI
2119611..2120636                   PHAGE_Salmon_118970_sal3_NC_031940: baseplate subunit; SFxv_2280; phage(gi100105)     8.31e-130           Shigellaflexneri2002017MGRRRKNPEHEKLPPNVYPNKYSYVWKPTSRESVTLTAIKDGLAALWKKYEETVNNRDRAMTFGRLWEKFLASAYYSDLSPRTQKDYLQHQKKLLAVFGKVPADSIKPEHIRRYMDKRGEQSKTQANHEKSSMSRVYSWGYERGYVKANPCAGVSKFKAKNRERYVTDKEYQAVLSVAPLPVFIAMEIAYLCAARVSDVLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLPTSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSRDKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPRKYSK
complement(2120692..2120778)       tRNA                                                                                 N/A                 GGAGAGATGCCGGAGCGGCTGAACGGACCGGTCTCGAAAACCGGAGTGGGGGCAACTCCACCGGGGGTTCAAATCCCCCTCTCTCCG
2120833..2121669                   putative YeeI protein; SFxv_2281                                                     N/A                 Shigellaflexneri2002017MQFCSSDEFASKTMIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVALAERFLQQKRLVPLQGFELNSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGDRASGVPFISLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH
2121703..2121715                   attR                                                                                 N/A                 ATGGCTTATGAAA
2121770..2121842                   tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAG
2122520..2123269                   PROPHAGE_Escher_CFT073: prophage P4 integrase; SFxv_2282; phage(gi26248270)          0.0                 Shigellaflexneri2002017MRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGKNKFIP
complement(2123376..2124215)       PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; SFxv_2284; phage(gi41057343)     0.0                 Shigellaflexneri2002017MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERLFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVASFC
2133068..2133079                   attR                                                                                 N/A                 ATGCCTGCCAGT

#### region 14 ####
complement(2260757..2261260)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_2418; phage(gi557307573)        2.41e-110           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
2261270..2261281                   attL                                                                                 N/A                 TTCATGGCCATA
2261374..2261523                   putative integrase encoded by prophage CP-933K; SFxv_2419                            N/A                 Shigellaflexneri2002017MSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYPPVS
2261533..2262006                   lipoprotein; SFxv_2420                                                               N/A                 Shigellaflexneri2002017MEFYMKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAITYVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKSTYTDTYAQENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK
2262844..2263017                   IS600 ORF2; SFxv_2423                                                                N/A                 Shigellaflexneri2002017MSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYQNVIGFQRKRDA
complement(2263340..2264074)       putative response regulatory protein yehT; SFxv_2425                                 N/A                 Shigellaflexneri2002017MEGRGMIKVLIVDDEPLARENLRIFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
complement(2264056..2265741)       PHAGE_Entero_YYZ_2008_NC_011356: putative 2-component sensor protein YehU; SFxv_2426; phage(gi209427798)     0.0                 Shigellaflexneri2002017MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKFLCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSMGGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILAIARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAASTEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSTYTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIKAVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQVNIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNAGLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA
2266284..2267468                   PROPHAGE_Escher_MG1655: IS4 transposase; SFxv_2427; phage(gi16132099)                0.0                 Shigellaflexneri2002017MFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGYYSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSRLTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSPVSCLTDWHYPIDAQKTGKTTWFAKLRLKLNWDLASKGETMALYTIGEVALLCDINPVTLRA
2267693..2267941                   PHAGE_Entero_YYZ_2008_NC_011356: putative DNA damage-inducible protein; SFxv_2428; phage(gi209427797)     3.10e-53            Shigellaflexneri2002017MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH
complement(2268057..2268326)       PHAGE_Entero_HK630_NC_019723: tail fiber assembly protein; SFxv_2429; phage(gi428782810)     2.00e-25            Shigellaflexneri2002017MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQDAVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM
2273936..2273947                   attR                                                                                 N/A                 TTCATGGCCATA

#### region 15 ####
2269367..2271010                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; SFxv_2431; phage(gi169257209)     3.38e-05            Shigellaflexneri2002017MLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGENRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALKELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMSLELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQLSPRIMQTLLQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(2271766..2273133)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; SFxv_2432; phage(gi18249920)     3.56e-104           Shigellaflexneri2002017MSGYHIILKSRVNTPEVVMNTVADVMAGNDGEYCFHARTGKYGVYVKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAATARDDAQRFAEKARQDATVTAEDRKATAEDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKTANHLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPGTPTGTYIVSPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
complement(2273205..2273750)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; SFxv_2433; phage(gi849255280)     2.06e-53            Shigellaflexneri2002017MLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
complement(2273753..2274166)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; SFxv_2434; phage(gi849255282)       2.37e-28            Shigellaflexneri2002017MAALPKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
2274402..2274905                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_2435; phage(gi557307573)        1.78e-108           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKAIGHYLNIKHYQ
2275351..2275578                   HTH-type transcriptional regulator mlrA; SFxv_2436                                   N/A                 Shigellaflexneri2002017MLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKILLSNENVDVQNVWRDQQETLLTYLQSVNRPGNPGD
2275604..2275930                   PHAGE_Stx2_c_1717_NC_011357: putative transposase; SFxv_2437; phage(gi209447180)     2.94e-65            Shigellaflexneri2002017MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEFDRLWKK
2276145..2276813                   PROPHAGE_Escher_CFT073: transposase IS629; SFxv_2439; phage(gi26250986)              1.51e-158           Shigellaflexneri2002017MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTIGRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKSEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA
complement(2276864..2277178)       hypothetical protein; SFxv_2442                                                      N/A                 Shigellaflexneri2002017MSEWASEDINAPSLLTGNPALQPQTGGILNIPANHQRIFTLFFTCRSQTNGDVVDQYAVEDRQQRLESRLLALKPSAQRNKQMCGECLGGVILTALFDPRSQAM
2277153..2277311                   putative transcriptional regulator; SFxv_2441                                        N/A                 Shigellaflexneri2002017MSSLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDIFPLGI
complement(2277459..2278190)       Binding-protein-dependent transport systems inner membrane component precursor; SFxv_2444     N/A                 Shigellaflexneri2002017MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQESFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAVLAIAVPVIGFGLQPAIIALILYGVLPILQVTLAGLGAIDPSVTEVAKGMGMSRGQRLRKVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGALLVALAAIIADRLFERLVQALSQHAK
complement(2278195..2279121)       PHAGE_Bacill_G_NC_023719: gp245; SFxv_2445; phage(gi593777701)                       1.76e-29            Shigellaflexneri2002017MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTRPANDFVRQFFGRSELGVHLLSLRSVADYVRREERAEGEALAEEMTLRDALSLFVARGCEVLPVVNTQGQPCGTLHFQDLLVEA

#### region 16 ####
2398564..2398842                   PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; SFxv_2552; phage(gi100010)         1.06e-42            Shigellaflexneri2002017MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
2398800..2399705                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SFxv_2553; phage(gi24111655)     0.0                 Shigellaflexneri2002017MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(2398845..2399276)       putative IS2 ORF; SFxv_2555                                                          N/A                 Shigellaflexneri2002017MQCLTITAVQRERDTQSLSVITAELEPVRAPSLIAFFHGHSACMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
complement(2400305..2400448)       PHAGE_Entero_P1_NC_005856: UpfO; SFxv_2556; phage(gi46401720)                        7.51e-11            Shigellaflexneri2002017MTLLQVHNFVDNSGRKKWLSRTLGQTRCPGKSMGREKFVKNNCSAIS
2400576..2402861                   PHAGE_Colwel_9A_NC_018088: ribonucleotide-diphosphate reductase subunit alpha; SFxv_2557; phage(gi392973311)     0.0                 Shigellaflexneri2002017MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
2402864..2404225                   PHAGE_Pseudo_OBP_NC_016571: putative NrdB; SFxv_2558; phage(gi371671580)             0.0                 Shigellaflexneri2002017MRCRMRRKRLIRPTARFVGLIRRASVASGSGCRMQRERLIRPTARICRPDKTRQRRIRHRMRRKMPYPALNSQQDTLMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
2404225..2404479                   PHAGE_Cyanop_S_RIM50_NC_031242: baseplate wedge subunit and tail pin; SFxv_2559; phage(gi100204)     9.29e-06            Shigellaflexneri2002017MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
complement(2404533..2405183)       PH-inducible stress response protein; SFxv_2560                                      N/A                 Shigellaflexneri2002017MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
2405398..2405604                   hypothetical protein; SFxv_2561                                                      N/A                 Shigellaflexneri2002017MNFIRQGLGIALQPELTLKSIAGELCSVPHEPTFYRQISLLTKEKPVEGSPLFLLQMCMEQLVAIGKI
complement(2405646..2406722)       PHAGE_Staphy_MCE_2014_NC_025416: glycerophosphoryl diester phosphodiesterase; SFxv_2562; phage(gi725948760)     5.36e-11            Shigellaflexneri2002017MKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE

#### region 17 ####
complement(2722628..2723068)       PHAGE_Entero_SfMu_NC_027382: DNA invertase; SFxv_2866; phage(gi849255283)            8.64e-84            Shigellaflexneri2002017MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLKTLSAGDTLVVWKLDRLGRSMRHLVVLVEALRERGINFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTKAGLEAARAQGRIGGRRPKLSPE
2723559..2725385                   PHAGE_Phage_Gifsy_1_NC_010392: leucine-rich repeat protein; SFxv_2867; phage(gi169257209)     4.41e-05            Shigellaflexneri2002017MREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQRTEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKELIARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLKKLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQENIIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQFRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVSTQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFTVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS
complement(2726140..2727360)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; SFxv_2869; phage(gi18249920)     5.54e-97            Shigellaflexneri2002017MSGYHIILKSRVNTPEVVMNTVADVMAGNDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDVVKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTANHLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPGTPTGTYIVSPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
complement(2727432..2727977)       PHAGE_Entero_SfMu_NC_027382: tail fiber assembly protein; SFxv_2870; phage(gi849255280)     2.06e-53            Shigellaflexneri2002017MLHLKNITAGNPKTAEQYQMTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEGSS
complement(2727980..2728498)       PHAGE_Entero_SfMu_NC_027382: tail fiber protein; SFxv_2871; phage(gi849255282)       3.48e-28            Shigellaflexneri2002017MSGDSGGQSIRFQNGVAIAFKNIQAGTARKFTLSSANNSTKNAAFYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTEGVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQKLINGTWYNVASI
2728562..2728927                   PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; SFxv_2872; phage(gi17546153)     9.81e-59            Shigellaflexneri2002017MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
2728885..2729790                   PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SFxv_2873; phage(gi24113121)     0.0                 Shigellaflexneri2002017MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREVLHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
complement(2728930..2729361)       Insertion element IS2 protein; SFxv_2875                                             N/A                 Shigellaflexneri2002017MQYLTITAVQRERDTQSLSVITAELEPVRAPSLIAFFHGHSACMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
complement(2729715..2730701)       PHAGE_Entero_phiP27_NC_003356: putative tail fiber protein; SFxv_2876; phage(gi18249918)     5.03e-82            Shigellaflexneri2002017MKASDKPRQLAVPFASTGDKNRIPDKATQQTRESGNAAYDSGFPPVTMTAVSAGGIPPHGKDFNGLMYDITAAIRFAQAGGLYTYNAGFAGAIGGYAKGAILAGVATTAVWLNTTDDNLTDPEGSDSAGWVNLLEDPKRIFLRQKNNLSDLQNKGTARDNLQVYSKEQSDQRYVHREGDKITGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEGQGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGNSIVLGDNDTGFKQNGDGILDVYANSQRVFRWICPYISRHLLSLNPLQARCRRYSRGER
complement(2730688..2731293)       PHAGE_Aeromo_vB_AsaM_56_NC_019527: hypothetical protein; SFxv_2877; phage(gi422937564)     6.46e-40            Shigellaflexneri2002017MQNVAATVLAQYAASPRLNALINSFNAALSPDSFISDFYGLIWNIDTAEKYGLDVWGKIVGVSRWLTVKDDFNYLGFSESRMDTPVMDDPCPFNQAPFYNGKSDTRTVDLSDAVYRRLILMKAMSNITDCSVPDINLMLRFMFGKKRRAYVLNNGGLRMSYVFESALSLAELAIIQSSGALPSPPGVYVSVVLKESRNEGQ
complement(2731295..2731762)       PHAGE_Acinet_phiAC_1_NC_028995: putative baseplate J-like protein; SFxv_2878; phage(gi971763836)     4.20e-10            Shigellaflexneri2002017MYGGSPADIAAAIWRKAPPGIDMNGNTTFTVADKEYDPPYPEYVISWQTLKPVSLHVSVTLKKSDYLPSDITRQVQQSVLDAFNGTDGGLRARVASVVSAGRYYAGIYKTDPEHIDILGLTVSRDGSSWTTAVTFGIDEIPVLDVSDISVKLQEA
2732395..2733213                   PROPHAGE_Escher_CFT073: transposase insF; SFxv_2879; phage(gi26249410)               0.0                 Shigellaflexneri2002017MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKHHQMAA
complement(2733254..2733910)       putative Integrase; SFxv_2880                                                        N/A                 Shigellaflexneri2002017MRIDRIKVTFGEREVFSDVTYNRLVEVLDEWIATRSNNNALELFAELRRFWKFCAPTLCNGRNVAASLPDDYVSSRVQKPTPTRLFTDIESIARLWLNVAACTSVHQKNAVRFMIITGVRPINVHNLRWDYVYEEAGEIVYPEGVIGMRGAMKTQKAFRLPITPEIRRIIDEQKAWRDSVPECNRDYVFLQPRDPMQPFSKRSLDKLVKTYSPDGAVK

#### region 18 ####
2995089..2995100                   attL                                                                                 N/A                 ATATGCTTTGCC
complement(2995599..2997218)       PROPHAGE_Escher_Sakai: putative integrase; SFxv_3139; phage(gi15834496)              3.24e-24            Shigellaflexneri2002017MLKSRTYLYQRNGVFYIRLRMKTTSRLTASLPSHNRYKLASVSLRTKDRRTAMAHSRHIKSALKAIHADNPNASYEELREHLKTIVEWELSVSRDDLNDPESYQLYVDQYDDIKSNLREAVATERLTVDQHRYINDVIGVLKACQDRLNGDSSGLLSYLEPETGSLRPSVSLSVLAEPEVPEPKALTLASLIEQYEQENAQNWKPATLSENRASHSTLIEIFDYLDIQDVGKATRADMLRVREVLQQLPKNRKQRFKSMPLSDLLNRESKTDCLDVVTINNKYLIKMAAVFKWAVRNDLIAKNLTEGLELKVPQRKASDARDAFSPEQVGQLLVAAKAYSQKTSGKPYHYYVTALAAITGARLNEVAQLQVKDVRTTEAGTVFIHINEDDSSLPGKSIKNAHSDRCVPLVDGAYGFVLADFMSLVEDRRKTEGDNAMVFNGLKLMKNGYGEQVSKWFNRTLLPKVLADRSGLAFHSFRHTVATQLKQHGVELAYAQAIMGHSSGSITYDRYAKEVEVETLKEKLAESLSSKKNRRKVIA
complement(2997356..2997426)       tRNA                                                                                 N/A                 GCGGGCGTAGTTCAATGGTAGAACGAGAGCTTCCCAAGCTCTATACGAGGGTTCGATTCCCTTCGCCCGCT
complement(2997505..2998284)       PHAGE_Clostr_phi24R_NC_019523: lysozyme-peptidase; SFxv_3140; phage(gi422936721)     7.78e-16            Shigellaflexneri2002017MFFKRGKILSAGRLNKKSLGIVMFLSVGLLLAGCSGSKSSDTGTYSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGSTDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC
3000983..3001861                   Xanthine dehydrogenase FAD-binding subunit; SFxv_3142                                N/A                 Shigellaflexneri2002017MFDFASYHRAATLADAINLLADNPQAKLLAGGTDVLIQLHHHNDRYRHIVDIHNLAELRGITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAATFIAGPQIRNVATYGGNICNGATSADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSLEHDEILVAFHFPPQPKEHAGSAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFGVAAPTPIRCQHAEQTAQNAPLNLQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMTKKVISEAVAAAGGKLQ
3001858..3002337                   Xanthine dehydrogenase iron-sulfur-binding subunit; SFxv_3143                        N/A                 Shigellaflexneri2002017MNHSETITTECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGTVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK
complement(3002357..3002569)       putative integrase encoded by prophage CP-933K; SFxv_3145                            N/A                 Shigellaflexneri2002017MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYRVVKHITSVNPA
3002450..3002725                   PHAGE_Entero_P1_NC_005856: InsA; SFxv_3144; phage(gi46401643)                        4.01e-59            Shigellaflexneri2002017MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR
3002644..3003126                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_3146; phage(gi557307573)        7.00e-58            Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRGTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGGFAPIFPDICYHLTHYKPAAADIPVASDNPAHYADAIRYNARTPLQGSLLPLTRLVWA
complement(3002960..3003865)       PROPHAGE_Shigel_301: insertion element IS2 transposase InsD; SFxv_3149; phage(gi24113121)     0.0                 Shigellaflexneri2002017MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREVLHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
3003389..3003820                   Insertion element IS2 protein; SFxv_3147                                             N/A                 Shigellaflexneri2002017MQYLTITAVQRERDTQSLSVITAELEPVRAPSLIAFFHGHSACMCPFRWRYSRFSLKQQRILAHEPVNTFGIDRRHTIKFCLSAKQRPYPTITIRGQLSDNMVYTEKHIRIISVTTAAAIHPVIGSSENDVQLRTRHPETTAD
complement(3003823..3004188)       PROPHAGE_Ralsto_GMI1000: ISRSO10-transposase ORFA protein; SFxv_3150; phage(gi17546153)     9.81e-59            Shigellaflexneri2002017MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE
3004915..3006432                   PHAGE_Clostr_c_st_NC_007581: putative uracil permease; SFxv_3152; phage(gi80159777)     8.41e-07            Shigellaflexneri2002017MCLDSFINVNGCFLFWRAKGETLMSAIDSQLPSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAGAVAVPLMIGDRLGLSKDAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSIGLSIIQVGIDWAAGGKGNPQYGNPVYLGISFAVLIFILLITRYAKGFMSNVAVLLGIVFGFLLSWMMNEVNLSGLHDASWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFLALGEIVGRKLSSHDIICGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVMRVHSRWVCISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHADLVKESVSDKDLEVRTVRMWLLMRKLKKNEHGE
3006682..3007230                   Isopentenyl-diphosphate Delta-isomerase; SFxv_3153                                   N/A                 Shigellaflexneri2002017MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESSEDAVIRRCRYELGVEITPPESIYPDFRYRATDPRGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLRGIDATPWAFSPWMVMQATNREARIRLSAFTQLK
complement(3007273..3008790)       lysyl-tRNA synthetase; SFxv_3154                                                     N/A                 Shigellaflexneri2002017MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGLQDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK
complement(3008800..3009681)       PHAGE_Mycoba_Tonenili_NC_031080: baseplate wedge subunit; SFxv_3155; phage(gi100201)     2.54e-08            Shigellaflexneri2002017MKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKAGL
3014013..3014024                   attR                                                                                 N/A                 ATATGCTTTGCC

#### region 19 ####
3719858..3720508                   PHAGE_Bacill_G_NC_023719: gp249; SFxv_3910; phage(gi593777705)                       1.45e-09            Shigellaflexneri2002017MFILLAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNNVTFDSSSAPLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL
3720612..3721586                   putative dehydrogenase; SFxv_3911                                                    N/A                 Shigellaflexneri2002017MKPSVILYKALPDDLLQRLQAHFTVHQVANLSPQTVVQNAAIFAEAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRVHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD
complement(3721636..3722466)       putative lipoprotein; SFxv_3912                                                      N/A                 Shigellaflexneri2002017MILPGRLRRKGILQACPGLSLSRQTRVCRCALFLGERSKKMATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ
3723351..3723563                   PHAGE_Lactoc_bIL312_NC_002671: Csp; SFxv_3913; phage(gi13095918)                     3.01e-24            Shigellaflexneri2002017MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQKVSFTIESGAKGPAAGNVTSL
complement(3723750..3723902)       PHAGE_Entero_933W_NC_000924: host killer protein; SFxv_3914; phage(gi9632541)        5.68e-06            Shigellaflexneri2002017MPQKYRLLSLIVICFTLLFFTWMIRDSLCELHIKQESYELAAFLAYKLKE
complement(3724004..3724855)       PROPHAGE_Escher_MG1655: IS150 transposase B; SFxv_3915; phage(gi16131429)            0.0                 Shigellaflexneri2002017MKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRIGEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCLDNAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV
complement(3724852..3725520)       PROPHAGE_Escher_MG1655: IS150 transposase A; SFxv_3916; phage(gi16131428)            6.60e-115           Shigellaflexneri2002017MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYLRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAGLRALKISTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMYLKKLKALAHPTKK
3725595..3726098                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_3917; phage(gi557307573)        4.55e-109           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ

#### region 20 ####
4538976..4538987                   attL                                                                                 N/A                 CAATCACATCAC
4551792..4552796                   PROPHAGE_Escher_Sakai: FtsH protease regulator HflC; SFxv_4719; phage(gi15834405)     0.0                 Shigellaflexneri2002017MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSAGTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
4552878..4553075                   putative membrane protein YjeT; SFxv_4720                                            N/A                 Shigellaflexneri2002017MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRRFGGGLVVAGVVVYYMLRKTIG
4553179..4554477                   PHAGE_Mycoba_Sebata_NC_041993: hinge connector of long tail fiber proximal connector; SFxv_4721; phage(gi100264)     4.52e-23            Shigellaflexneri2002017MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTLVINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSEACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAEKLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGAGPFPAELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLDVLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGLPQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA
4554682..4555107                   HTH-type transcriptional repressor nsrR; SFxv_4722                                   N/A                 Shigellaflexneri2002017MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE
4555146..4557587                   PHAGE_Lactoc_Q54_NC_008364: putative ribonuclease; SFxv_4723; phage(gi115304286)     1.01e-78            Shigellaflexneri2002017MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRCQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
4557767..4558498                   23S rRNA (guanosine-2'-O-)-methyltransferase rlmB; SFxv_4724                         N/A                 Shigellaflexneri2002017MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS
complement(4558509..4558718)       IS600 ORF2; SFxv_4725                                                                N/A                 Shigellaflexneri2002017MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYQKNHPNLDGFS
4558793..4559296                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_4726; phage(gi557307573)        4.55e-109           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHYLNIKHYQ
4559298..4559552                   Inner membrane protein yjfL; SFxv_4727                                               N/A                 Shigellaflexneri2002017MESLPTLLGYVIPLSSAAINAVSIPDYFAWGGIALVIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAALAGGIFNAACMTW
4559562..4560200                   PHAGE_Citrob_Moon_NC_027331: putative lipoprotein; SFxv_4728; phage(gi849248649)     2.19e-09            Shigellaflexneri2002017MARKRKSRNNSKIGHGAISRIGRPNNPFEPRRNRYAQKYLTLALMGGAAFFVLKGCSDSSDVDNDGDGTFYATVQDCIDDGNNADICARGWNNAKAAFYADVPKNMTQQNCQSKYENCYYDNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASRPVWRNTSGDYSWRFGSGKKESYSSGGFTTRKASTVSRGGYGRSSSARGHWGG
4560203..4561366                   PHAGE_Ralsto_RSL1_NC_010811: glutathionylspermidine synthase; SFxv_4729; phage(gi189426829)     4.85e-94            Shigellaflexneri2002017MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESRAYRFTLRQIEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRMDFAWCGNAPVKLLEYNADTPTSLYESAYFQWLWLEDARRSGIIPRDADQYNAIQERLISRFSELYSRELFYFCCCQDTDEDRSTVLYLQDCAQQAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRDDNGPLLRKRREQWVEPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKSQIAAGESYVRKPIYSREGGNVTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIREDNTLITKDTSRFVPHYIAG
complement(4562749..4563252)       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; SFxv_4731; phage(gi557307573)        2.41e-110           Shigellaflexneri2002017MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
4563138..4563149                   attR                                                                                 N/A                 CAATCACATCAC
4563366..4563548                   putative integrase encoded by prophage CP-933K; SFxv_4732                            N/A                 Shigellaflexneri2002017MSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQHYRFRQYYVPGCVARSQ
complement(4563969..4564271)       hypothetical protein; SFxv_4734                                                      N/A                 Shigellaflexneri2002017MGKRKMELTMKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVSNISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA
complement(4564393..4564821)       hypothetical protein; SFxv_4735                                                      N/A                 Shigellaflexneri2002017MWVTLSSRFHSKIAYQVTIREHSPKVKLIRHYTMVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTDHPQEIRRDQTQGLQRIGSVSTMVRGSPDDALAEIRAKAVAAKADYYVVVMVDETIVTGQWYSQAILYRK
4564904..4565653                   PHAGE_Mycoba_40AC_NC_023607: esterase/lipase protein; SFxv_4736; phage(gi589893660)     7.27e-06            Shigellaflexneri2002017MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYSYFAVALAQAGLRVIMPDAPDHGSRFSGDEARRLNQFWQILLQSMQEFTTLRAAIAEENWLLDDRLAVGGASMGAMTALGITARHPTVKCTASMMGSGYFTSLARSLFPPLIPETAAQQNEFNKIVAPLAEWEATNHLEQLGDRPLLLWHGLDDDVVPADESLRLQQALSETGRDKLLTCSWQPGVRHRITPEALDAAVTFFRQHL
complement(4565650..4566405)       PHAGE_Escher_RCS47_NC_042128: DNA helicase; SFxv_4737; phage(gi100021)               2.52e-17            Shigellaflexneri2002017MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLGESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQLEAQGVSILRV
