gi|387504844|ref|NC_017657.1|  Escherichia coli O55:H7 str. RM12579 plasmid p12579_2, complete 66078, gc%: 48.91%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
10538..11284                       PHAGE_Xantho_Cf1c_NC_001396: hypothetical protein; ECO55CA74_25989; phage(gi17975752)     2.07e-06            EscherichiacoliO55H7strRM12579MTTDNTNTTRNDSLAARTDTWLQSLLVWSPGQRDIIKTVALVLMVLDHANRILHLDQTWMFLAGRGAFPLFALVWGLNLSRHAHIRQSAINRLWGWAVFSQFWYYFAGFTWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILMMALWGPLSGTSYGIAGLLMLAVSHRLYRAEDRTERLALVACLLAVIPALNLASCDVAAVAGLVMTVLTVGLVSCTGKSLPRFWPGDFFPTFYACHLAVLGVLAL
11339..11899                       PHAGE_Sinorh_phiM9_NC_028676: putative ProQ/FINO family protein; ECO55CA74_25994; phage(gi966199408)     2.48e-05            EscherichiacoliO55H7strRM12579MTEQKRPVLTLKRKTEGTGPVRSRKTIINVTTPQKWKVKKQKLAEKAAREAELAAKKAQARQALSIYLTLPSLDEAVNTLKPWWPGLFDGDTPRLLACGIRDVLLEDVVQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEAYAAERLDKIRRQNRIKAELQAVLDEK
12034..12294                       hypothetical protein; ECO55CA74_25999                                                N/A                 EscherichiacoliO55H7strRM12579MNGFRNSSRNSQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAALPGQTGSSLPGKGLNTATGAAGEGCNEKSSFHYTRSQKAERSL
12523..12879                       PHAGE_Staphy_Ipla5_NC_018281: nuclease; ECO55CA74_26004; phage(gi399528953)          4.05e-11            EscherichiacoliO55H7strRM12579MAGIVCRYSWTGLRVLDGDTIEVMDSLKAVRIRLVNIDAPEKKQDYGRWSTDMMKSLIAGKTVTVTYFQRDRYGRILGQVYAPDGMNVNQFMVRVGAAWVYEQYKGEGLMERKRTLRT
complement(13385..13531)           PHAGE_Shigel_Sf6_NC_005344: gene 56 protein; ECO55CA74_26009; phage(gi41057344)      3.82e-25            EscherichiacoliO55H7strRM12579MKRRNFSPEFKRESAQLVVDQNYTVADATKAMDVGLSTMTRWVKHLRD
13636..13887                       PROPHAGE_Escher_MG1655: IS3 transposase B; ECO55CA74_26014; phage(gi16128284)        3.00e-13            EscherichiacoliO55H7strRM12579MVVSLFCQGLKAKASRKFNLVCYRAHGLPVSENLLELDFYASDRTRNGRKTSRTYVQMKVGCIRQWSLTCGHVSLFAGRCRHV
13880..14158                       PROPHAGE_Escher_MG1655: IS3 transposase B; ECO55CA74_26019; phage(gi16128284)        2.50e-41            EscherichiacoliO55H7strRM12579MYDSVACDSLQMALWLRKIARNVIVYTDRGGQYCFADYQVLLKRHNLHGSMSAKGYCNDNACVESFFLSLKVKCIHGEHFIYREIIWTTDRM

#### region 2 ####
38916..38929                       attL                                                                                 N/A                 GGATGTGCAATGTG
complement(39805..40446)           PHAGE_Staphy_StB27_NC_019914: integrase; ECO55CA74_26149; phage(gi431809677)         4.45e-05            EscherichiacoliO55H7strRM12579MFIRAYLRASTEDQFADRAKEMLEQFVQGRGHKIASYYRENISGTKLDRPELGRLLMDSHRNDILLVEQIDRLTRLSNSDWITLKKQIEQHELRIVSLDVPTSWQALSDKAPSQSDPITRAVITAINNMLIDLMAAMSHKDWLSRRQRQKQGIERAHTLGKYRGKQADQERHQKVLYYRQVKKLSIRETADATGYSTSQVCRIQALYREPTTD
40501..40512                       attL                                                                                 N/A                 TTATGTCATTAA
40601..43579                       PROPHAGE_Xantho_33913: Tn5041 transposase; ECO55CA74_26154; phage(gi21231545)        1.56e-36            EscherichiacoliO55H7strRM12579MARRQILSQSERESLLALPDDELTLTRMAYFSEHDLALINAHRKPASRFGFAVLLCYLKNVGFAPDKKTPPSDALLKPIANRLKLADGLWSSYINGRETTRREHLTELYRYLGVKAFTNKIQQSCITHLLPMATRTDKGILLAEEMLAYLRQNKVMFPAIDVVERTCAEAMAGGDKIVFQTLNAPLTSAHREALDRLLESSDNQPSRLTWLLQPPGKINGKNVLQHIDRLNSIESLALPEGIDRTIHQNRLLKLAREGRKMSSRDLTRFSAARRHAILVCVLEDARATLTDEIIELHERILNSLFNKAKKTQAERLQQTGRLIQLKLKQYIDIGQALSEAHDSGEDPWLAIEKILPWPEFIASLEETRHLARKNNFDPLHIITEKYSTLRKYAPRMLSTLQLVATPAAQALADALLVIKDMYKKQLRKVPATAPLEFVPESWRKVVITPTGIDRQYYEFCALSELKGALRSGDIWVKGSRRYKNFDDYLIPEKDFDKLSPALPLPVSADYHEYITNRMILLQSKLEEVNKMAAHGELPDVEISDKGVKISPLDNCVPLQVSPLSELIYSMLPRPKITEILDEVNSWTAFTRHFSHIKNDMTRPDTRLLLTTILADGINLGLTKMAEACPGCTKSSLEDIQAWYIRDETYSAALAELVNAQGKRPLAAFWGDGTTSSSDGQNFRTGNSGRYAGQINPKYGQEPGCQFYTHISDQYSPFYTCIISRVRDSTHVLDGLLYHESDLDIREHYTDTAGFTDHVFALMHLLGFAFCPRIRDLHDKKLFIKGKADQYPALHSLISPTRINLKEIEIHWREVLRLATSIKQGTVTASLMLRKLASYPKQNGLAKALREIGRIERTLFMLDWFRDPALRRRVQAGLNKGEARNALARAVFMHRLGEIRDRKPENQSYRASGLTLLTAAISLWNTVYMERAVDALKRKGMKINAQLLSHLSPLGWEHINLTGDYIWKNNRIPTSGKFRRLRSVKIDKVKKQP
43657..44061                       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; ECO55CA74_26159; phage(gi157166064)     5.87e-15            EscherichiacoliO55H7strRM12579MKSLTAVRKKSPNYPVEFKIKMVELSHRPEISVAQLAREHGINDNLLFKWRQYWREGKLRPPSTTENNVPELLPITLDAEDVVPTTSPRSQPVAAATPESLNISCEVTFRHGSLRLNGAISENILNLLIRELKR
44058..44405                       PHAGE_Stx2_c_1717_NC_011357: transposase; ECO55CA74_26164; phage(gi209447152)        6.83e-75            EscherichiacoliO55H7strRM12579MIPLPSGTKIWLVAGITDMRNGFNGLAAKMQTTLKDDPMSGHVFIFRGRNGSQVKLLWSTGDGLCLLTKRLERGRFAWPSARDGKVFLTPAQLAMLLEDIDWRQPKRLLTSLTML
44454..45992                       PHAGE_Stx2_c_1717_NC_011357: transposase; ECO55CA74_26169; phage(gi209447153)        0.0                 EscherichiacoliO55H7strRM12579MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQLDKLRRMNFGSRSEKVSRRIAQMEADLKALQKESDTLTGRVDDPTVQRPLRQTRTRKPFPESLPRDEKRLLPAASCCPECGGSLSYLGEDAAEQLELIRSAFRVIRTVREKHACTQCDAIVQAPAPSRPIERGIAGPGLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSGWVDACCRLLSPLEEALQDYVLTDGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNAGSTLVPAVWFAYSPDRKGIHPQPHLAGFSGVLQADAYAGFNELYRDGRITEAACWAHARRKIHDVHVRTPSALTEEALKRIGELYAIEAEIRGMTAEQRLAERQLKTKPLLKSLESWLREKMKTLSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRKNYLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRVALPTE
46495..47247                       PHAGE_Salmon_SJ46_NC_031129: dihydrofolate reductase; ECO55CA74_26174; phage(gi100060)     1.18e-29            EscherichiacoliO55H7strRM12579MSFLDAKSYDTLFGLPELYEDALPRFSLSCEDIAFARTHRRSHNRLGFAIQLALVRDLGRTLRTGEIPPEAVISVVAEQLDIYPAVFTLYAQREETRREHAREIVSALELRSVQSSDYRMLIIAATREAATTEKGLPITRAVINKLKDQKLLAPAPAQLIRLAMAGRADARRLSYRELIRDLKPSSISALEQLLTERVGEKSILGWIAEAPEGVKLKNLKGLIARLEVLRTAAISDVTNGAIVIHTQHLK
47288..48118                       PROPHAGE_Escher_CFT073: transposase; ECO55CA74_26179; phage(gi26248360)              6.98e-178           EscherichiacoliO55H7strRM12579MVTFETVMEIKILHKQGMSSRAFARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQESAVRFETDPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRILYIEFTDNMRYDTLETCHRNAFRFFGSGPREVLYDNMKTVVLQRDAYQTSQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNCFYIPLTAATTVEEQRQSRRYAPCPAHIKKSGNE
48545..48832                       PHAGE_Entero_HK022_NC_002166: integrase; ECO55CA74_26184; phage(gi9634144)           2.72e-52            EscherichiacoliO55H7strRM12579MQEASSSETIIASTYHEPLSLATVSRYLTKARNASGISFDGDPPTFHELRSLSARLYRNQIGDKFAQRLLGHKFDSMAARYRDSRGREWDKIEIG
49555..50880                       PHAGE_Entero_BP_4795_NC_004813: NleA4795 protein; ECO55CA74_26189; phage(gi157166068)     0.0                 EscherichiacoliO55H7strRM12579MNIQPIVQSGITTQNNQHNQAEQAPPAQIPQSELPNGCEAGFVVHIPDDIQQHAPECGERTALLSLIQDEGLLSGLDKYLAPHLEEGSAGKKALDMFGLFNVTQMALEIPSTVRGISGKYGVQMNIVKPDIHPTSGNYFLQIFPLHDEIGLNFKDLPGPLKNALSNINISTTAVSAITSAATSATTSTVTTEPKDPIPWFGLTAQVVRNHGVELPIVKTENGWKLVGETPLTPDGPKANYTEEWVIRPGEADFKYGTSPLQATLGLEFGAHFKWDLDNPNTKYAVLTNAAANALGAAGGFAVSKIPGVDPMLAPHIGAMVGQAAGHAIQCNTPGLKPDTILWWAGTTLGLADLNKAETGEARFTDYPRIWWHAREGAIFPNKEDIARATGADIRAMEEGVPVGQSHPRPEDVVINIESNDLPHHNPLNHVDIVDIIQETRV
complement(51007..51249)           hypothetical protein; ECO55CA74_26194                                                N/A                 EscherichiacoliO55H7strRM12579MNAAAGIDSRFSVQGHKSRIFLVSALHASMVRRDLLCQGYGDDATSIICFSLVKRDAENAQQAPHVMHGLGLFINSLRKY
51455..51610                       PHAGE_Entero_BP_4795_NC_004813: putative avirulence protein; ECO55CA74_26199; phage(gi157166069)     8.79e-19            EscherichiacoliO55H7strRM12579MFAAKPEPSQRCISGFLTTGPNDENANNKPSSDMANRIKPVVSDLQIDIYN
51658..51670                       attL                                                                                 N/A                 CTCAACCTTATCG
complement(51867..52757)           PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; ECO55CA74_26204; phage(gi157166067)     0.0                 EscherichiacoliO55H7strRM12579MMPLLDKLREQYGVGPLCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKKEIQRVYDENHKVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQVLWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHTPPAEAEKAYYASIGNDDLAA
complement(52754..53080)           PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfA protein of IS629; ECO55CA74_26209; phage(gi157166066)     5.79e-73            EscherichiacoliO55H7strRM12579MTKNTRFSPEVRQRAARMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKK
57207..57219                       attR                                                                                 N/A                 CTCAACCTTATCG
57580..57591                       attR                                                                                 N/A                 TTATGTCATTAA
58000..58013                       attR                                                                                 N/A                 GGATGTGCAATGTG

#### region 3 ####
55412..56152                       PHAGE_Brevib_Jenst_NC_028805: putative recombinase XerD; ECO55CA74_26234; phage(gi971744895)     2.40e-05            EscherichiacoliO55H7strRM12579MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGARPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRTLPPLR
complement(58059..58196)           hypothetical protein; ECO55CA74_26239                                                N/A                 EscherichiacoliO55H7strRM12579MVIAMQYANKSVDKCLLQRLSTSYKQWWFIALPYEEKWKQVIPVS
complement(58168..58413)           PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; ECO55CA74_26244; phage(gi41057343)     2.30e-22            EscherichiacoliO55H7strRM12579MCRALRNALETRPRDGRLLFHSDQGVQYKSNKYRKLLYGVMQSMSRRGNCLDNSSMERVFRSLKSEWLPKGGYGDCHAVRE
complement(58466..58753)           PHAGE_Mycoba_Spartacus_NC_041986: RNA polymerase binding protein; ECO55CA74_26249; phage(gi100043)     1.52e-05            EscherichiacoliO55H7strRM12579MRYQVKFREDALKEWQKLDKTIQQQFAKKLKKCCDNPHIPSAKLRGIKDCYKIKLRASGFRLVYQVIDEQLIIAVVAVGKRERSDVYNLASERMR
complement(58750..59001)           antitoxin of toxin-antitoxin stability system; ECO55CA74_26254                       N/A                 EscherichiacoliO55H7strRM12579MPNIILSDTSASVSELKKNPMATVSAGDGFPIAILNRNQPAFYCVPAELYEKMLDALDDQELVKLVAERSNQPLHDVDLDKYL
59390..60595                       PHAGE_Yersin_PY54_NC_005069: plasmid partition protein SopA; ECO55CA74_26259; phage(gi33770537)     9.37e-19            EscherichiacoliO55H7strRM12579MKRDYGSVGTIALRASALLQAMSRDIEEQRKEFNLTEYHQTYTRNAVAKLPKLSRRIVELAIKEMEESGYEFNKKRVGNVEQYALTIQNVIDIYAHRQIPKYRDVHKEPYVIFVVNLKGGVSKTVSTVTLAHALRVHPDLLRHDLRILVIDLDPQASSTMFLDHTHSIGTVLETAAQAMLNNLDAETLREAVIRPTMIPGVDVIPASIDDGFVASQWESLVAEHLPGFKPSEVLRKTIIDRIADDYDFVFIDTGPHLDPFLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLERLEEEGVEPRLSASIGFMSKMTSKRDHETSHSLAREVYASNILDSSLPRLDGFERCGESFDTIISANPVSYPGSAEALKKARTEAERFTKAVFDRIEYIRGASK
60592..61554                       PHAGE_Yersin_PY54_NC_005069: partitioning protein SpyB; ECO55CA74_26264; phage(gi33770536)     1.29e-15            EscherichiacoliO55H7strRM12579MKKVLARGRVLGNSNSEFARMLEGDGEIKTFTLKSGKQAKFIKTVVLSGDIESKTFVDVSVNGRDQTMLSRESVSDITRTIKLQQFFPAIGREVDGRIEVLDGTRRRAACIYNNVKFEILVTKDSIDIADARQLAKDIQTAREHSLRELGKRLEVTYGASMTKEEIAQAESISPAKVTRAFQAASVPDEMISVFPIINDISLSDYQFLLKLSEKATNKKMSVEEFMDRVRQKLMALPDYPTIEKSKILAVFRSEGKLLTDRPVKTVETEKLKEFSDRNQFARKKTDPRKRLVVYEFSRISNEVQLEIDEAIKNILRKLPE
complement(61695..62090)           PHAGE_Salmon_vB_SosS_Oslo_NC_018279: error-prone lesion bypass DNA polymerase V; ECO55CA74_26269; phage(gi399528790)     1.50e-48            EscherichiacoliO55H7strRM12579MKTSPFAVNEPYYGNVASEKLLIPTQDTRDIIAAAVRILDRIWVDGHRYAKAGCILNDFTPTGVSHLNLFDDTQPRSNSNQPLKVVDSINHSGLGKVWFAGRGIAPEWQIKREMSSPAYTTRWNELPVARL
complement(62203..62634)           PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; ECO55CA74_26274; phage(gi431811050)     1.97e-22            EscherichiacoliO55H7strRM12579MVHLEALAPRVEQYSIDEMFLDVRGIDSCIDFEDFDQQLREHVRNGTGLTIGVGMGPTKTLAKSTQWASKEWPQFGGVLALTPDNIRRAEKLLSLQLAHEPYIYQEELQCGSGEKGPGTQWRKLYFTGGRTAPQTADSLQPVL
62740..63153                       YfdA; ECO55CA74_26279                                                                N/A                 EscherichiacoliO55H7strRM12579MPSRLDVEVNGFNGGVLNGVPSAYHWYTEQYGVKWPVGYEVNISSQRDNFIQVDFDTPWCQPESDVIAELSRRFSCTLEHWYAEQGCDFCGWQLYERGELVDVLWGELEWSSPTDDDELPEVTGPAWIVDNVAHYGG
63539..64222                       PHAGE_Staphy_Stau2_NC_030933: aerobic ribonucleotide reductase B subunit; ECO55CA74_26284; phage(gi100063)     3.40e-27            EscherichiacoliO55H7strRM12579MSRFIQGDCVRVMATFPGNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDTLMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKTYTSKAAYVGYRHECAYILAKGRPALPQKPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAANDNWFEPEAA
64223..64444                       PHAGE_Entero_N15_NC_001901: gp50; ECO55CA74_26289; phage(gi9630517)                  6.44e-07            EscherichiacoliO55H7strRM12579MNYAGHEKLRAEVAEVANAMCDLRTTMNEMEQRYSFNADTLPERLVRQTLFRANRLLMEAYTEILELDSCFKD
