gi|00000000|ref|NC_018658.1|  Escherichia coli O104:H4 str. 2011C-3493 chromosome, complete 5273097, gc%: 50.71%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
62632..62644                       attL                                                                                 N/A                 CCGCTTTGTGATT
71018..71029                       attL                                                                                 N/A                 AATAACAAAAAT
77429..78133                       PROPHAGE_Brucel_1330: transposase, putative; O3K_00455; phage(gi23502708)            1.98e-53            [EscherichiacoliO104:H4str.2011C-3493]
complement(78194..79030)           streptomycin phosphotransferase; O3K_00460                                           N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(79030..79833)           hypothetical protein; O3K_00465                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(79894..80709)           dihydropteroate synthase; O3K_00470                                                  N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(81017..81868)           replication protein C; O3K_00475                                                     N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(81855..82562)           PHAGE_Rhodof_P26218_NC_029061: RepA; O3K_00480; phage(gi985757636)                   8.27e-12            [EscherichiacoliO104:H4str.2011C-3493]
complement(82624..83328)           PROPHAGE_Brucel_1330: transposase, putative; O3K_00485; phage(gi23502708)            1.98e-53            [EscherichiacoliO104:H4str.2011C-3493]
83453..84157                       PROPHAGE_Brucel_1330: transposase, putative; O3K_00490; phage(gi23502708)            1.98e-53            [EscherichiacoliO104:H4str.2011C-3493]
complement(84191..84970)           dihydropteroate synthase; O3K_00495                                                  N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(84964..85311)           PHAGE_Acinet_Acj61_NC_014661: putative quaternary ammonium compound-resistance protein qacE; O3K_00500; phage(gi311992758)     9.11e-09            [EscherichiacoliO104:H4str.2011C-3493]
complement(85541..86014)           PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126: hypothetical protein; O3K_00505; phage(gi100062)     1.75e-20            [EscherichiacoliO104:H4str.2011C-3493]
86172..87185                       PHAGE_Mycoba_Butters_NC_021061: integrase; O3K_00510; phage(gi479336499)             2.05e-12            [EscherichiacoliO104:H4str.2011C-3493]
complement(87144..87323)           transcriptional regulator; O3K_00515                                                 N/A                 [EscherichiacoliO104:H4str.2011C-3493]
87538..87738                       modulator protein; O3K_00520                                                         N/A                 [EscherichiacoliO104:H4str.2011C-3493]
87864..88424                       PHAGE_Salmon_SJ46_NC_031129: prohead core protein protease; O3K_00525; phage(gi100061)     7.62e-69            [EscherichiacoliO104:H4str.2011C-3493]
88427..91393                       PROPHAGE_Xantho_33913: Tn5041 transposase; O3K_00530; phage(gi21231545)              8.67e-46            [EscherichiacoliO104:H4str.2011C-3493]
91460..91549                       acetyltransferase; O3K_00535                                                         N/A                 [EscherichiacoliO104:H4str.2011C-3493]
91583..91858                       PHAGE_Entero_P1_NC_005856: InsA; O3K_00540; phage(gi46401643)                        7.08e-63            [EscherichiacoliO104:H4str.2011C-3493]
91777..92280                       PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; O3K_00545; phage(gi557307573)        1.67e-117           [EscherichiacoliO104:H4str.2011C-3493]
92318..92329                       attR                                                                                 N/A                 AATAACAAAAAT
complement(92399..93583)           PROPHAGE_Escher_CFT073: putative prophage integrase; O3K_00550; phage(gi26250313)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
107804..107816                     attR                                                                                 N/A                 CCGCTTTGTGATT

#### region 2 ####
complement(914853..915038)         PHAGE_Stx2_c_1717_NC_011357: transposase; O3K_04480; phage(gi209447153)              1.85e-27            [EscherichiacoliO104:H4str.2011C-3493]
915654..915665                     attL                                                                                 N/A                 CTCAACAGATTG
916373..916636                     PHAGE_Shigel_SfIV_NC_022749: ISEhe3 orfB; O3K_04495; phage(gi557307549)              4.08e-17            [EscherichiacoliO104:H4str.2011C-3493]
complement(916969..917367)         PHAGE_Stx2_c_1717_NC_011357: transposase; O3K_04500; phage(gi209447153)              1.45e-48            [EscherichiacoliO104:H4str.2011C-3493]
complement(917432..918556)         PROPHAGE_Escher_CFT073: transposase; O3K_04505; phage(gi26248360)                    0.0                 [EscherichiacoliO104:H4str.2011C-3493]
918777..919286                     PHAGE_Stx2_c_1717_NC_011357: transposase; O3K_04510; phage(gi209447153)              3.38e-115           [EscherichiacoliO104:H4str.2011C-3493]
919349..919567                     PROPHAGE_Escher_CFT073: transposase; O3K_04515; phage(gi26246249)                    9.05e-36            [EscherichiacoliO104:H4str.2011C-3493]
complement(919718..923836)         PROPHAGE_Escher_CFT073: Pic serine protease precursor; O3K_04520; phage(gi26246250)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(924001..924387)         PHAGE_Entero_BP_4795_NC_004813: putative transposase OrfB; O3K_04525; phage(gi157166063)     3.75e-83            [EscherichiacoliO104:H4str.2011C-3493]
complement(926678..926917)         PHAGE_Shigel_Sf6_NC_005344: putative transposase OrfB; O3K_04540; phage(gi41057343)     3.43e-35            [EscherichiacoliO104:H4str.2011C-3493]
927234..928385                     PROPHAGE_Escher_MG1655: IS30 transposase; O3K_04545; phage(gi16132105)               0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(928305..928691)         PROPHAGE_Shewan_MR-1: ISSod1, transposase OrfA; O3K_04550; phage(gi24373865)         6.85e-10            [EscherichiacoliO104:H4str.2011C-3493]
complement(928725..929018)         hypothetical protein; O3K_04555                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(929107..931977)         PHAGE_Salmon_BP63_NC_031250: prohead core protein protease; O3K_04560; phage(gi100061)     5.26e-05            [EscherichiacoliO104:H4str.2011C-3493]
complement(931980..933608)         PHAGE_Escher_slur16_NC_028248: putative adenine methyltransferase; O3K_04565; phage(gi947835025)     4.00e-55            [EscherichiacoliO104:H4str.2011C-3493]
complement(933618..936005)         PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; O3K_04570; phage(gi564292591)     4.87e-08            [EscherichiacoliO104:H4str.2011C-3493]
complement(936015..936995)         PHAGE_Acidia_virus_NC_029316: AAA+ ATPase; O3K_04575; phage(gi1002166819)            4.90e-18            [EscherichiacoliO104:H4str.2011C-3493]
complement(937021..939870)         PHAGE_Gordon_Orchid_NC_030915: hypothetical protein; O3K_04580; phage(gi100057)      1.06e-16            [EscherichiacoliO104:H4str.2011C-3493]
940171..940353                     hypothetical protein; O3K_04585                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
940281..940874                     hypothetical protein; O3K_04590                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(941340..941603)         hypothetical protein; O3K_04595                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
941639..941650                     attR                                                                                 N/A                 CTCAACAGATTG
complement(941744..942247)         PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; O3K_04600; phage(gi557307573)        8.26e-119           [EscherichiacoliO104:H4str.2011C-3493]
complement(942166..942441)         PHAGE_Entero_P1_NC_005856: InsA; O3K_04605; phage(gi46401643)                        4.10e-62            [EscherichiacoliO104:H4str.2011C-3493]
complement(942854..944116)         PROPHAGE_Shigel_301: putative P4-type integrase; O3K_04610; phage(gi24114228)        0.0                 [EscherichiacoliO104:H4str.2011C-3493]

#### region 3 ####
1558077..1558088                   attL                                                                                 N/A                 AACCGTTGCGTG
complement(1572518..1573951)       PHAGE_Bacill_SP_10_NC_019487: levanase; O3K_07555; phage(gi418489513)                9.73e-31            [EscherichiacoliO104:H4str.2011C-3493]
1574167..1575081                   aminoimidazole riboside kinase; O3K_07560                                            N/A                 [EscherichiacoliO104:H4str.2011C-3493]
1575153..1576400                   galactoside permease; O3K_07565                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(1576930..1577130)       PHAGE_Shigel_Sf6_NC_005344: gene 18 protein; O3K_07570; phage(gi41057296)            4.73e-44            [EscherichiacoliO104:H4str.2011C-3493]
complement(1577262..1577441)       PHAGE_Entero_HK629_NC_019711: hypothetical protein; O3K_07575; phage(gi428782043)     1.62e-36            [EscherichiacoliO104:H4str.2011C-3493]
complement(1578164..1578373)       PHAGE_Escher_phiV10_NC_007804: hypothetical protein; O3K_07585; phage(gi89152466)     4.53e-42            [EscherichiacoliO104:H4str.2011C-3493]
complement(1578736..1579407)       PHAGE_Escher_phiV10_NC_007804: hypothetical protein; O3K_07590; phage(gi89152464)     1.22e-109           [EscherichiacoliO104:H4str.2011C-3493]
complement(1579404..1579571)       PHAGE_Shigel_Sf6_NC_005344: gene 23 protein; O3K_07595; phage(gi41057301)            7.72e-33            [EscherichiacoliO104:H4str.2011C-3493]
complement(1579568..1579858)       PHAGE_Shigel_Sf6_NC_005344: gene 24 protein; O3K_07600; phage(gi41057302)            2.56e-61            [EscherichiacoliO104:H4str.2011C-3493]
complement(1579869..1580165)       PHAGE_Entero_mEp235_NC_019708: Abc2 protein; O3K_07605; phage(gi428781839)           1.26e-67            [EscherichiacoliO104:H4str.2011C-3493]
complement(1580189..1580572)       PHAGE_Entero_HK542_NC_019769: hypothetical protein; O3K_07610; phage(gi428783374)     8.17e-88            [EscherichiacoliO104:H4str.2011C-3493]
complement(1580572..1581177)       PHAGE_Entero_HK542_NC_019769: essential recombination function protein; O3K_07615; phage(gi428783375)     3.06e-149           [EscherichiacoliO104:H4str.2011C-3493]
complement(1581188..1581358)       PHAGE_Entero_c_1_NC_019706: hypothetical protein; O3K_07620; phage(gi428781773)      2.01e-35            [EscherichiacoliO104:H4str.2011C-3493]
complement(1581267..1581437)       PHAGE_Entero_HK022_NC_002166: hypothetical protein; O3K_07625; phage(gi19343385)     4.90e-34            [EscherichiacoliO104:H4str.2011C-3493]
complement(1581434..1581586)       PHAGE_Shigel_Sf6_NC_005344: gene 31 protein; O3K_07630; phage(gi41057309)            1.43e-29            [EscherichiacoliO104:H4str.2011C-3493]
complement(1581571..1581702)       PHAGE_Entero_c_1_NC_019706: CIII protein; O3K_07635; phage(gi428781775)              3.33e-24            [EscherichiacoliO104:H4str.2011C-3493]
1581932..1582207                   PHAGE_Entero_P1_NC_005856: InsA; O3K_07640; phage(gi46401643)                        7.08e-63            [EscherichiacoliO104:H4str.2011C-3493]
1582126..1582629                   PHAGE_Shigel_SfIV_NC_022749: IS1 transposase B; O3K_07645; phage(gi557307573)        1.15e-118           [EscherichiacoliO104:H4str.2011C-3493]
1582749..1582991                   PHAGE_Shigel_Sf6_NC_005344: hypothetical protein; O3K_07650; phage(gi41057340)       3.14e-52            [EscherichiacoliO104:H4str.2011C-3493]
1582994..1583434                   PHAGE_Acinet_LZ35_NC_031117: glutaredoxin; O3K_07655; phage(gi100075)                4.07e-57            [EscherichiacoliO104:H4str.2011C-3493]
1583431..1584843                   PHAGE_Shigel_Sf6_NC_005344: gene 2 protein; O3K_07660; phage(gi41057280)             0.0                 [EscherichiacoliO104:H4str.2011C-3493]
1584882..1586972                   PHAGE_Shigel_Sf6_NC_005344: gene 3 protein; O3K_07665; phage(gi41057281)             0.0                 [EscherichiacoliO104:H4str.2011C-3493]
1586986..1587870                   PHAGE_Shigel_Sf6_NC_005344: gene 4 protein; O3K_07670; phage(gi41057282)             0.0                 [EscherichiacoliO104:H4str.2011C-3493]
1587882..1589153                   PHAGE_Shigel_Sf6_NC_005344: gene 5 protein; O3K_07675; phage(gi41057283)             0.0                 [EscherichiacoliO104:H4str.2011C-3493]
1589196..1589381                   PHAGE_Shigel_Sf6_NC_005344: gene 6 protein; O3K_07680; phage(gi41057284)             4.48e-38            [EscherichiacoliO104:H4str.2011C-3493]
1589356..1589838                   PHAGE_Shigel_Sf6_NC_005344: gene 7 protein; O3K_07685; phage(gi41057285)             4.57e-114           [EscherichiacoliO104:H4str.2011C-3493]
1589847..1591265                   PHAGE_Shigel_Sf6_NC_005344: gene 8 protein; O3K_07690; phage(gi41057286)             0.0                 [EscherichiacoliO104:H4str.2011C-3493]
1591265..1592113                   PHAGE_Shigel_Sf6_NC_005344: gene 9 protein; O3K_07695; phage(gi41057287)             0.0                 [EscherichiacoliO104:H4str.2011C-3493]
1592113..1592568                   PHAGE_Shigel_Sf6_NC_005344: head assembly protein; O3K_07700; phage(gi41057288)      5.75e-110           [EscherichiacoliO104:H4str.2011C-3493]
1592571..1593263                   PHAGE_Shigel_Sf6_NC_005344: gene 11 protein; O3K_07705; phage(gi41057289)            3.58e-157           [EscherichiacoliO104:H4str.2011C-3493]
1593273..1594739                   PHAGE_Shigel_Sf6_NC_005344: gene 12 protein; O3K_07710; phage(gi41057290)            4.38e-149           [EscherichiacoliO104:H4str.2011C-3493]
1594739..1596583                   PHAGE_Salmon_ST160_NC_014900: Gp16; O3K_07715; phage(gi318065961)                    0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(1596598..1597083)       lipoprotein; O3K_07720                                                               N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(1597109..1597423)       hypothetical protein; O3K_07725                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(1597420..1597671)       PHAGE_Salmon_SEN22_NC_028696: regulatory protein; O3K_07730; phage(gi966201333)      2.99e-46            [EscherichiacoliO104:H4str.2011C-3493]
1597777..1597917                   PHAGE_Salmon_SEN22_NC_028696: hypothetical protein; O3K_07735; phage(gi966201334)     3.16e-10            [EscherichiacoliO104:H4str.2011C-3493]
1598150..1599028                   PHAGE_Salmon_vB_SemP_Emek_NC_018275: antirepressor; O3K_07740; phage(gi399498814)     1.11e-123           [EscherichiacoliO104:H4str.2011C-3493]
1599129..1601108                   PHAGE_Shigel_Sf6_NC_005344: gene 14 protein; O3K_07745; phage(gi41057292)            1.48e-63            [EscherichiacoliO104:H4str.2011C-3493]
complement(1601179..1603089)       PHAGE_Salmon_g341c_NC_013059: O-polysaccharide acetyltransferase protein; O3K_07750; phage(gi255252697)     3.72e-66            [EscherichiacoliO104:H4str.2011C-3493]
1603234..1603245                   attR                                                                                 N/A                 AACCGTTGCGTG
complement(1603318..1604475)       PHAGE_Shigel_Sf6_NC_005344: gene 16 protein; O3K_07755; phage(gi41057294)            0.0                 [EscherichiacoliO104:H4str.2011C-3493]

#### region 4 ####
2133761..2133774                   attL                                                                                 N/A                 CGCCGCATCCGACA
complement(2146651..2147394)       PHAGE_Staphy_SPbeta_like_NC_029119: tRNA (cmo5U34)-methyltransferase; O3K_10255; phage(gi985761180)     1.00e-36            [EscherichiacoliO104:H4str.2011C-3493]
complement(2147435..2147830)       inner membrane protein; O3K_10260                                                    N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2147883..2148608)       hypothetical protein; O3K_10265                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2148635..2149945)       PHAGE_Entero_phiP27_NC_003356: putative integrase; O3K_10270; phage(gi18249865)      0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2150001..2150237)       PHAGE_Entero_phiP27_NC_003356: putative excisionase; O3K_10275; phage(gi18249866)     5.10e-52            [EscherichiacoliO104:H4str.2011C-3493]
complement(2150246..2150392)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; O3K_10280; phage(gi157165988)     2.64e-23            [EscherichiacoliO104:H4str.2011C-3493]
complement(2150396..2150638)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; O3K_10285; phage(gi157165989)     1.31e-45            [EscherichiacoliO104:H4str.2011C-3493]
complement(2150723..2151481)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_10290; phage(gi410491607)     7.50e-142           [EscherichiacoliO104:H4str.2011C-3493]
complement(2151478..2151993)       PHAGE_Shigel_Ss_VASD_NC_028685: hypothetical protein; O3K_10295; phage(gi966200434)     3.52e-124           [EscherichiacoliO104:H4str.2011C-3493]
complement(2151995..2152543)       PHAGE_Escher_phiV10_NC_007804: hypothetical protein; O3K_10300; phage(gi89152464)     4.22e-79            [EscherichiacoliO104:H4str.2011C-3493]
complement(2152540..2152779)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10305; phage(gi428782346)     2.58e-47            [EscherichiacoliO104:H4str.2011C-3493]
complement(2152772..2152975)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10310; phage(gi428782347)     1.85e-42            [EscherichiacoliO104:H4str.2011C-3493]
complement(2152972..2153334)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10315; phage(gi428782348)     5.95e-83            [EscherichiacoliO104:H4str.2011C-3493]
complement(2153325..2153861)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10320; phage(gi428782349)     7.23e-131           [EscherichiacoliO104:H4str.2011C-3493]
complement(2153989..2154813)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10325; phage(gi428782350)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2155944..2156636)       PHAGE_Entero_mEp460_NC_019716: prophage repressor; O3K_10330; phage(gi428782354)     4.73e-156           [EscherichiacoliO104:H4str.2011C-3493]
2156734..2156994                   PHAGE_Entero_mEp460_NC_019716: putative antirepressor Cro; O3K_10335; phage(gi428782355)     2.22e-57            [EscherichiacoliO104:H4str.2011C-3493]
2156987..2157544                   PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10340; phage(gi428782356)     3.48e-124           [EscherichiacoliO104:H4str.2011C-3493]
2157541..2158686                   PHAGE_Entero_mEp460_NC_019716: regulatory protein Rha; O3K_10345; phage(gi428782357)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2158683..2158907                   PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10350; phage(gi428782358)     2.89e-48            [EscherichiacoliO104:H4str.2011C-3493]
2158904..2159722                   PHAGE_Entero_mEp460_NC_019716: replication protein; O3K_10355; phage(gi428782359)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2159719..2160213                   PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10360; phage(gi428782360)     3.19e-110           [EscherichiacoliO104:H4str.2011C-3493]
2160213..2160866                   PHAGE_Entero_mEp460_NC_019716: DNA N-6-adenine-methyltransferase; O3K_10365; phage(gi428782361)     4.46e-160           [EscherichiacoliO104:H4str.2011C-3493]
2160863..2161189                   PHAGE_Entero_mEp460_NC_019716: LexA DNA binding domain protein; O3K_10370; phage(gi428782362)     1.11e-73            [EscherichiacoliO104:H4str.2011C-3493]
2161186..2161581                   PHAGE_Entero_mEp460_NC_019716: holliday junction resolvase; O3K_10375; phage(gi428782363)     3.48e-87            [EscherichiacoliO104:H4str.2011C-3493]
2161744..2162559                   PHAGE_Entero_mEp460_NC_019716: KilA-N domain protein; O3K_10380; phage(gi428782364)     1.19e-126           [EscherichiacoliO104:H4str.2011C-3493]
2162561..2163556                   PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10385; phage(gi428782365)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2163574..2163915                   PHAGE_Shigel_SfII_NC_021857: antiterminator protein Q; O3K_10390; phage(gi526244682)     1.31e-57            [EscherichiacoliO104:H4str.2011C-3493]
complement(2163928..2164476)       hypothetical protein; O3K_10395                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2164463..2165389)       hypothetical protein; O3K_10400                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2165654..2165857                   PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10405; phage(gi428782368)     1.78e-44            [EscherichiacoliO104:H4str.2011C-3493]
2166009..2167058                   PHAGE_Entero_mEp460_NC_019716: DNA methylase; O3K_10410; phage(gi428782369)          0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2167108..2167183                   tRNA                                                                                 N/A                 GGCACTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
2167193..2167269                   tRNA                                                                                 N/A                 CCGCCATTAGCTCATCGGGATAGAGCGCCAGCCTTCGAAGCTGGTTGCGCGGGGTTCGAGTCCTCGATGGCGGTCCA
2167283..2167359                   tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGAATCCAGTACAACGCGCCA
2167850..2169703                   PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; O3K_10415; phage(gi209427766)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2169854..2170069                   PHAGE_Shigel_Ss_VASD_NC_028685: holin lysis protein S; O3K_10420; phage(gi966200466)     1.05e-45            [EscherichiacoliO104:H4str.2011C-3493]
2170074..2170880                   PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_10425; phage(gi428782371)     7.37e-25            [EscherichiacoliO104:H4str.2011C-3493]
complement(2170890..2171204)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; O3K_10430; phage(gi116221998)       9.26e-74            [EscherichiacoliO104:H4str.2011C-3493]
2171333..2171866                   PHAGE_Entero_mEp460_NC_019716: endolysin; O3K_10435; phage(gi428782372)              7.49e-123           [EscherichiacoliO104:H4str.2011C-3493]
2172023..2172205                   hypothetical protein; O3K_10440                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2172220..2172351                   PHAGE_Escher_phi191_NC_028660: hypothetical protein; O3K_10445; phage(gi966198023)     1.05e-14            [EscherichiacoliO104:H4str.2011C-3493]
2172363..2172821                   PHAGE_Entero_BP_4795_NC_004813: putative endopeptidase Rz; O3K_10450; phage(gi157166036)     4.19e-89            [EscherichiacoliO104:H4str.2011C-3493]
2173172..2173312                   hypothetical protein; O3K_10455                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2173445..2173630)       PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; O3K_10460; phage(gi157166037)     1.24e-25            [EscherichiacoliO104:H4str.2011C-3493]
complement(2173646..2173801)       hypothetical protein; O3K_10465                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2174025..2174573                   PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; small terminase subunit; Lambda Nu1 homolog; O3K_10470; phage(gi169257236)     5.26e-86            [EscherichiacoliO104:H4str.2011C-3493]
2174545..2176473                   PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; large terminase subunit; Lambda gpA homolog; O3K_10475; phage(gi169257235)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2176457..2176663                   PHAGE_Entero_HK225_NC_019717: head-tail connector gpW; O3K_10480; phage(gi428782379)     9.36e-18            [EscherichiacoliO104:H4str.2011C-3493]
2176660..2178252                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage portal protein; Lambda gpB homolog; O3K_10485; phage(gi169257233)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2178242..2179747                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage prohead protease; Lambda gpC homolog; O3K_10490; phage(gi169257232)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2179784..2180131                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage head decoration protein; Lambda gpD homolog; O3K_10495; phage(gi169257231)     7.10e-55            [EscherichiacoliO104:H4str.2011C-3493]
2180189..2181217                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage major capsid protein; Lambda gpE homolog; O3K_10500; phage(gi169257230)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2181269..2181652                   PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; O3K_10505; phage(gi169257229)     2.82e-08            [EscherichiacoliO104:H4str.2011C-3493]
2181645..2181998                   PHAGE_Entero_lambda_NC_001416: head-tail joining protein; O3K_10510; phage(gi9626253)     1.80e-53            [EscherichiacoliO104:H4str.2011C-3493]
2182013..2182588                   PHAGE_Entero_lambda_NC_001416: tail component; O3K_10515; phage(gi9626254)           1.00e-66            [EscherichiacoliO104:H4str.2011C-3493]
2182585..2182980                   PHAGE_Entero_lambda_NC_001416: tail component; O3K_10520; phage(gi9626255)           1.91e-73            [EscherichiacoliO104:H4str.2011C-3493]
2182988..2183740                   PHAGE_Entero_HK630_NC_019723: major tail protein V; O3K_10525; phage(gi428782800)     1.39e-139           [EscherichiacoliO104:H4str.2011C-3493]
2183754..2184176                   PROPHAGE_Escher_Sakai: putative minor tail protein; O3K_10530; phage(gi15832205)     9.05e-99            [EscherichiacoliO104:H4str.2011C-3493]
2184203..2184616                   PHAGE_Entero_lambda_NC_001416: tail component; O3K_10535; phage(gi9626258)           1.24e-55            [EscherichiacoliO104:H4str.2011C-3493]
2184597..2187209                   PROPHAGE_Escher_Sakai: putative tail length tape measure protein precursor; O3K_10540; phage(gi15832203)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2187206..2187535                   PHAGE_Entero_lambda_NC_001416: tail component; O3K_10545; phage(gi9626260)           4.40e-76            [EscherichiacoliO104:H4str.2011C-3493]
2187535..2188233                   PHAGE_Entero_mEp460_NC_019716: minor tail protein; O3K_10550; phage(gi428782331)     7.44e-163           [EscherichiacoliO104:H4str.2011C-3493]
2188238..2188981                   PHAGE_Entero_mEp460_NC_019716: tail fiber component; O3K_10555; phage(gi428782332)     3.87e-177           [EscherichiacoliO104:H4str.2011C-3493]
2188879..2189550                   PHAGE_Entero_lambda_NC_001416: tail component; O3K_10560; phage(gi9626263)           1.28e-158           [EscherichiacoliO104:H4str.2011C-3493]
2189611..2193006                   PHAGE_Entero_mEp460_NC_019716: host specificity protein; O3K_10565; phage(gi428782334)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2193074..2193673                   PHAGE_Entero_mEp460_NC_019716: Lom protein; O3K_10570; phage(gi428782335)            7.70e-125           [EscherichiacoliO104:H4str.2011C-3493]
2193825..2195363                   PHAGE_Entero_BP_4795_NC_004813: putative tail fiber protein; O3K_10575; phage(gi157166060)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2195372..2195980                   PHAGE_Escher_Av_05_NC_025830: tail fiber protein; O3K_10580; phage(gi730985066)      8.93e-24            [EscherichiacoliO104:H4str.2011C-3493]
complement(2196519..2196767)       PHAGE_Entero_mEp460_NC_019716: DinI-like protein; O3K_10585; phage(gi428782337)      6.55e-54            [EscherichiacoliO104:H4str.2011C-3493]
2196864..2197040                   PHAGE_Entero_phiP27_NC_003356: hypothetical protein; O3K_10590; phage(gi18249922)     2.59e-17            [EscherichiacoliO104:H4str.2011C-3493]
2204067..2204080                   attR                                                                                 N/A                 CGCCGCATCCGACA

#### region 5 ####
2349653..2349664                   attL                                                                                 N/A                 AAACTGAAAGAG
2355821..2356120                   PHAGE_Geobac_E3_NC_029073: hypothetical protein; O3K_11420; phage(gi985758341)       1.32e-18            [EscherichiacoliO104:H4str.2011C-3493]
complement(2356422..2356562)       PHAGE_Entero_P88_NC_026014: hypothetical protein; O3K_11425; phage(gi744692752)      5.48e-26            [EscherichiacoliO104:H4str.2011C-3493]
complement(2356753..2357013)       PHAGE_Salmon_SP_004_NC_021774: Ogr; O3K_11430; phage(gi526003639)                    3.52e-08            [EscherichiacoliO104:H4str.2011C-3493]
complement(2357207..2358187)       PROPHAGE_Escher_MG1655: IS5 transposase and trans-activator; O3K_11435; phage(gi16129935)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2358445..2359614                   hypothetical protein; O3K_11440                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2359706..2360815)       PHAGE_Entero_P88_NC_026014: gene D protein; O3K_11445; phage(gi744692751)            0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2360973..2362157                   PHAGE_Entero_P88_NC_026014: tail sheath monomer; O3K_11450; phage(gi744692749)       0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2362157..2362669                   PHAGE_Entero_P88_NC_026014: major tail tube protein; O3K_11455; phage(gi744692748)     7.34e-120           [EscherichiacoliO104:H4str.2011C-3493]
2362724..2363089                   PHAGE_Entero_P88_NC_026014: tail protein; O3K_11460; phage(gi744692747)              5.74e-80            [EscherichiacoliO104:H4str.2011C-3493]
2363017..2363253                   PHAGE_Entero_P88_NC_026014: tail fiber protein; O3K_11465; phage(gi744692746)        2.39e-29            [EscherichiacoliO104:H4str.2011C-3493]
2363240..2366047                   PHAGE_Entero_P88_NC_026014: tail tape measure protein; O3K_11470; phage(gi744692745)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2366060..2366548                   PHAGE_Entero_P88_NC_026014: tail protein; O3K_11475; phage(gi744692744)              1.70e-116           [EscherichiacoliO104:H4str.2011C-3493]
2366705..2367277                   PHAGE_Strept_9874_NC_031023: hypothetical protein; O3K_11480; phage(gi100020)        5.52e-10            [EscherichiacoliO104:H4str.2011C-3493]
complement(2367321..2367899)       PROPHAGE_Escher_MG1655: Qin prophage; predicted tail fibre assembly protein; O3K_11485; phage(gi16129505)     3.04e-126           [EscherichiacoliO104:H4str.2011C-3493]
complement(2367899..2370031)       PHAGE_Entero_P88_NC_026014: tail fiber protein; O3K_11490; phage(gi744692739)        4.30e-155           [EscherichiacoliO104:H4str.2011C-3493]
complement(2370034..2370564)       PHAGE_Entero_P88_NC_026014: tail protein; O3K_11495; phage(gi744692738)              1.59e-116           [EscherichiacoliO104:H4str.2011C-3493]
complement(2370557..2371453)       PHAGE_Entero_P88_NC_026014: baseplate assembly protein J; O3K_11500; phage(gi744692737)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2371457..2371807)       PHAGE_Entero_P88_NC_026014: lysozyme family baseplate assembly protein; O3K_11505; phage(gi744692736)     1.42e-80            [EscherichiacoliO104:H4str.2011C-3493]
complement(2371804..2372385)       PHAGE_Entero_P88_NC_026014: baseplate assembly protein V; O3K_11510; phage(gi744692735)     7.11e-135           [EscherichiacoliO104:H4str.2011C-3493]
complement(2372382..2373026)       PHAGE_Entero_P88_NC_026014: tail protein; O3K_11515; phage(gi744692734)              3.83e-151           [EscherichiacoliO104:H4str.2011C-3493]
complement(2373010..2373477)       PHAGE_Entero_P88_NC_026014: tail completion protein; O3K_11520; phage(gi744692733)     5.54e-109           [EscherichiacoliO104:H4str.2011C-3493]
complement(2373501..2375381)       PHAGE_Entero_YYZ_2008_NC_011356: hypothetical protein; O3K_11525; phage(gi209427766)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2375520..2375927)       PHAGE_Entero_P88_NC_026014: hypothetical protein; O3K_11530; phage(gi744692732)      2.87e-90            [EscherichiacoliO104:H4str.2011C-3493]
complement(2375924..2376316)       PHAGE_Entero_P88_NC_026014: endolysin; O3K_11535; phage(gi744692731)                 2.37e-92            [EscherichiacoliO104:H4str.2011C-3493]
complement(2376313..2376636)       PHAGE_Entero_P88_NC_026014: holin; O3K_11540; phage(gi744692730)                     2.81e-72            [EscherichiacoliO104:H4str.2011C-3493]
complement(2376639..2376839)       PHAGE_Entero_P88_NC_026014: tail component protein; O3K_11545; phage(gi744692729)     1.73e-42            [EscherichiacoliO104:H4str.2011C-3493]
complement(2376839..2377333)       PHAGE_Entero_P88_NC_026014: head completion-stabilization protein; O3K_11550; phage(gi744692728)     6.48e-115           [EscherichiacoliO104:H4str.2011C-3493]
complement(2377435..2378235)       PHAGE_Entero_P88_NC_026014: terminase endonuclease subunit; O3K_11555; phage(gi744692727)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2378281..2379333)       PHAGE_Entero_P88_NC_026014: major capsid protein; O3K_11560; phage(gi744692726)      0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2379357..2380193)       PHAGE_Entero_P88_NC_026014: capsid scaffolding protein; O3K_11565; phage(gi744692725)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2380348..2382099                   PHAGE_Entero_P88_NC_026014: terminase ATPase subunit; O3K_11570; phage(gi744692724)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2382099..2383145                   PHAGE_Entero_P88_NC_026014: PBSX family portal protein; O3K_11575; phage(gi744692723)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2383657..2383920)       PHAGE_Salmon_FSLSP030_NC_021779: hypothetical protein; O3K_11580; phage(gi525972396)     1.44e-41            [EscherichiacoliO104:H4str.2011C-3493]
complement(2383922..2384353)       PHAGE_Entero_P88_NC_026014: hypothetical protein; O3K_11585; phage(gi744692720)      2.02e-27            [EscherichiacoliO104:H4str.2011C-3493]
complement(2384373..2384687)       PHAGE_Entero_P88_NC_026014: chromosome partitioning protein; O3K_11590; phage(gi744692718)     1.57e-26            [EscherichiacoliO104:H4str.2011C-3493]
complement(2384692..2385651)       PHAGE_Entero_P88_NC_026014: recombinase; O3K_11595; phage(gi744692717)               0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2385728..2388568)       PHAGE_Entero_P88_NC_026014: replication protein; O3K_11600; phage(gi744692716)       0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2388565..2388954)       hypothetical protein; O3K_11605                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2389027..2389257)       PHAGE_Entero_P88_NC_026014: derepression protein; O3K_11610; phage(gi744692714)      4.76e-44            [EscherichiacoliO104:H4str.2011C-3493]
complement(2389580..2389879)       PHAGE_Entero_P88_NC_026014: hypothetical protein; O3K_11615; phage(gi744692710)      1.37e-57            [EscherichiacoliO104:H4str.2011C-3493]
complement(2389876..2390121)       PHAGE_Entero_P88_NC_026014: MarR family transcriptional regulator; O3K_11620; phage(gi744692709)     6.38e-48            [EscherichiacoliO104:H4str.2011C-3493]
complement(2390118..2390321)       PHAGE_Entero_P88_NC_026014: hypothetical protein; O3K_11625; phage(gi744692708)      2.99e-42            [EscherichiacoliO104:H4str.2011C-3493]
complement(2390311..2390631)       hypothetical protein; O3K_11630                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2390720..2390833)       PHAGE_Entero_P88_NC_026014: membrane protein; O3K_11635; phage(gi744692707)          2.01e-16            [EscherichiacoliO104:H4str.2011C-3493]
complement(2390830..2391072)       PHAGE_Entero_P88_NC_026014: DNA modification methyltransferase; O3K_11640; phage(gi744692706)     3.66e-52            [EscherichiacoliO104:H4str.2011C-3493]
complement(2391084..2391371)       PHAGE_Entero_P88_NC_026014: hypothetical protein; O3K_11645; phage(gi744692705)      1.56e-46            [EscherichiacoliO104:H4str.2011C-3493]
complement(2391382..2391720)       PHAGE_Entero_P88_NC_026014: hypothetical protein; O3K_11650; phage(gi744692704)      1.73e-68            [EscherichiacoliO104:H4str.2011C-3493]
complement(2391735..2392013)       DNA-binding protein; O3K_11655                                                       N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2392105..2392416                   PHAGE_Entero_WPhi_NC_005056: C; O3K_11660; phage(gi33438928)                         5.89e-32            [EscherichiacoliO104:H4str.2011C-3493]
2392126..2392137                   attR                                                                                 N/A                 AAACTGAAAGAG
2392505..2393440                   PHAGE_Entero_P2_NC_001895: integrase; O3K_11665; phage(gi9630357)                    2.85e-100           [EscherichiacoliO104:H4str.2011C-3493]
2393451..2393846                   hypothetical protein; O3K_11670                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2394036..2395016                   vtamin B12-transporter permease; O3K_11675                                           N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2395079..2395630                   glutathione peroxidase; O3K_11680                                                    N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2395630..2396379                   PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; O3K_11685; phage(gi371496158)        2.83e-09            [EscherichiacoliO104:H4str.2011C-3493]

#### region 6 ####
2525541..2525552                   attL                                                                                 N/A                 CCACCACAAAGC
complement(2525795..2526958)       PHAGE_Shigel_POCJ13_NC_025434: integrase; O3K_12300; phage(gi725949702)              0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2526814..2527185)       PHAGE_Salmon_epsilon34_NC_011976: Excisionase; O3K_12305; phage(gi221328641)         1.85e-57            [EscherichiacoliO104:H4str.2011C-3493]
complement(2527220..2527471)       PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12310; phage(gi725949703)     2.41e-56            [EscherichiacoliO104:H4str.2011C-3493]
complement(2527519..2528199)       PHAGE_Stx2_c_1717_NC_011357: exonuclease; O3K_12315; phage(gi209447136)              3.06e-168           [EscherichiacoliO104:H4str.2011C-3493]
complement(2528196..2528981)       PHAGE_Shigel_POCJ13_NC_025434: recombinational DNA repair protein; O3K_12320; phage(gi725949705)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2528987..2529283)       PHAGE_Shigel_POCJ13_NC_025434: mobile element protein; O3K_12325; phage(gi725949706)     1.00e-61            [EscherichiacoliO104:H4str.2011C-3493]
complement(2531460..2531846)       PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12335; phage(gi725949708)     5.87e-60            [EscherichiacoliO104:H4str.2011C-3493]
complement(2531930..2532151)       PHAGE_Shigel_POCJ13_NC_025434: Kil protein; O3K_12340; phage(gi725949709)            1.05e-46            [EscherichiacoliO104:H4str.2011C-3493]
2532608..2532817                   hypothetical protein; O3K_12345                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2532921..2533151                   hypothetical protein; O3K_12350                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2533177..2533890)       PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12355; phage(gi725949711)     2.55e-172           [EscherichiacoliO104:H4str.2011C-3493]
complement(2533894..2534277)       PHAGE_Entero_933W_NC_000924: antitermination protein N; O3K_12360; phage(gi9632486)     3.84e-89            [EscherichiacoliO104:H4str.2011C-3493]
complement(2534772..2535548)       PHAGE_Burkho_phi6442_NC_009235: gp47, conserved hypothetical protein; O3K_12365; phage(gi134288670)     5.62e-09            [EscherichiacoliO104:H4str.2011C-3493]
complement(2535536..2536078)       hypothetical protein; O3K_12370                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2536125..2536838)       PHAGE_Entero_mEp234_NC_019715: prophage repressor; O3K_12375; phage(gi428782293)     4.65e-176           [EscherichiacoliO104:H4str.2011C-3493]
2536939..2537139                   PHAGE_Entero_lambda_NC_001416: antirepressor; O3K_12380; phage(gi9626293)            4.09e-42            [EscherichiacoliO104:H4str.2011C-3493]
2537278..2537574                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12385; phage(gi725949715)     9.19e-67            [EscherichiacoliO104:H4str.2011C-3493]
2537589..2537807                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12390; phage(gi725949716)     2.00e-47            [EscherichiacoliO104:H4str.2011C-3493]
2537909..2538910                   PHAGE_Shigel_POCJ13_NC_025434: primosomal protein I; O3K_12395; phage(gi725949717)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2538917..2539657                   PHAGE_Shigel_POCJ13_NC_025434: DNA replication protein; O3K_12400; phage(gi725949718)     8.20e-161           [EscherichiacoliO104:H4str.2011C-3493]
2539683..2540453                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12405; phage(gi725949719)     1.06e-151           [EscherichiacoliO104:H4str.2011C-3493]
2540469..2540864                   PHAGE_Shigel_POCJ13_NC_025434: LygF; O3K_12410; phage(gi725949780)                   4.48e-39            [EscherichiacoliO104:H4str.2011C-3493]
2540921..2541505                   PHAGE_Entero_cdtI_NC_009514: Valyl-tRNA synthetase; O3K_12415; phage(gi148609417)     9.18e-20            [EscherichiacoliO104:H4str.2011C-3493]
2541621..2541725                   hypothetical protein; O3K_12420                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2541914..2542126                   PHAGE_Entero_933W_NC_000924: protein MokW; O3K_12425; phage(gi9632542)               1.07e-38            [EscherichiacoliO104:H4str.2011C-3493]
2542336..2542515                   bacteriophage protein; O3K_12430                                                     N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2542534..2543019                   PHAGE_Staphy_SPbeta_like_NC_029119: Fic/DOC family protein; O3K_12435; phage(gi985761206)     5.68e-06            [EscherichiacoliO104:H4str.2011C-3493]
complement(2543070..2543387)       PHAGE_Entero_mEp390_NC_019721: prophage repressor; O3K_12440; phage(gi428782701)     4.29e-05            [EscherichiacoliO104:H4str.2011C-3493]
complement(2543495..2543749)       hypothetical protein; O3K_12445                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2544094..2544765                   PHAGE_Shigel_POCJ13_NC_025434: antirepressor protein; O3K_12450; phage(gi725949727)     2.63e-133           [EscherichiacoliO104:H4str.2011C-3493]
2544820..2545230                   PHAGE_Shigel_POCJ13_NC_025434: NinB DNA recombination; O3K_12455; phage(gi725949728)     4.29e-96            [EscherichiacoliO104:H4str.2011C-3493]
2545227..2545418                   PHAGE_Entero_lambda_NC_001416: NinE protein; O3K_12460; phage(gi9626301)             5.90e-32            [EscherichiacoliO104:H4str.2011C-3493]
2545442..2545732                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12465; phage(gi725949729)     1.40e-64            [EscherichiacoliO104:H4str.2011C-3493]
2545729..2546091                   PHAGE_Shigel_POCJ13_NC_025434: holliday junction resolvase; O3K_12470; phage(gi725949730)     7.91e-81            [EscherichiacoliO104:H4str.2011C-3493]
2546091..2546285                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12475; phage(gi725949731)     2.40e-41            [EscherichiacoliO104:H4str.2011C-3493]
2546278..2546712                   PHAGE_Entero_Min27_NC_010237: antitermination protein Q; O3K_12480; phage(gi170783649)     1.63e-103           [EscherichiacoliO104:H4str.2011C-3493]
2547478..2549388                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_12485; phage(gi410491642)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2549527..2549709                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12490; phage(gi725949738)     4.50e-33            [EscherichiacoliO104:H4str.2011C-3493]
2549735..2549980                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_12495; phage(gi410491644)     8.16e-46            [EscherichiacoliO104:H4str.2011C-3493]
2550057..2550272                   PHAGE_Shigel_Stx_NC_029120: holin lysis protein S; O3K_12500; phage(gi985761286)     8.61e-46            [EscherichiacoliO104:H4str.2011C-3493]
2550277..2550810                   PHAGE_Shigel_POCJ13_NC_025434: lysin; O3K_12505; phage(gi725949741)                  2.15e-117           [EscherichiacoliO104:H4str.2011C-3493]
2551031..2551144                   hypothetical protein; O3K_12510                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2551146..2551604                   PHAGE_Shigel_POCJ13_NC_025434: outer membrane lytic protein Rz; O3K_12515; phage(gi725949743)     1.09e-79            [EscherichiacoliO104:H4str.2011C-3493]
complement(2551685..2552266)       lipopolysaccharide core heptose(II)-phosphate phosphatase; O3K_12520                 N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2552869..2553684                   PHAGE_Escher_P13374_NC_018846: phage terminase small subunit; O3K_12525; phage(gi410491651)     1.17e-140           [EscherichiacoliO104:H4str.2011C-3493]
2553665..2555371                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12530; phage(gi725949748)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2555371..2557515                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12535; phage(gi725949749)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2557673..2558680                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12540; phage(gi725949750)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2558703..2559917                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12545; phage(gi725949751)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2559972..2560361                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; O3K_12550; phage(gi116222009)       1.84e-85            [EscherichiacoliO104:H4str.2011C-3493]
2560412..2560873                   PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; O3K_12555; phage(gi966197778)     1.26e-98            [EscherichiacoliO104:H4str.2011C-3493]
2560857..2561420                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12560; phage(gi725949754)     1.67e-131           [EscherichiacoliO104:H4str.2011C-3493]
2561420..2562070                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12565; phage(gi725949755)     1.16e-154           [EscherichiacoliO104:H4str.2011C-3493]
2562067..2563974                   PHAGE_Shigel_POCJ13_NC_025434: tail fiber protein; O3K_12570; phage(gi725949756)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2564615..2564842                   PHAGE_Shigel_POCJ13_NC_025434: super-infection exclusion protein; O3K_12575; phage(gi725949758)     2.67e-49            [EscherichiacoliO104:H4str.2011C-3493]
2565183..2566808                   PHAGE_Entero_933W_NC_000924: hypothetical protein; O3K_12580; phage(gi9632528)       0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2566805..2568073                   PHAGE_Entero_Min27_NC_010237: hypothetical protein; O3K_12585; phage(gi170783675)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2568088..2568366                   PHAGE_Shigel_POCJ13_NC_025434: putative outer membrane protein; O3K_12590; phage(gi725949762)     1.77e-60            [EscherichiacoliO104:H4str.2011C-3493]
2568372..2568989                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; O3K_12595; phage(gi116222020)       5.05e-147           [EscherichiacoliO104:H4str.2011C-3493]
2569081..2569806                   PHAGE_Shigel_POCJ13_NC_025434: attachment invasion locus protein precursor; O3K_12600; phage(gi725949764)     2.68e-116           [EscherichiacoliO104:H4str.2011C-3493]
2570041..2570181                   PHAGE_Escher_P13374_NC_018846: prophage host toxic membrane protein; O3K_12605; phage(gi410491667)     2.65e-26            [EscherichiacoliO104:H4str.2011C-3493]
2570238..2570639                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12610; phage(gi725949766)     1.71e-89            [EscherichiacoliO104:H4str.2011C-3493]
2570731..2571387                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12615; phage(gi725949767)     7.37e-152           [EscherichiacoliO104:H4str.2011C-3493]
2571390..2571836                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; O3K_12620; phage(gi116222024)       5.17e-100           [EscherichiacoliO104:H4str.2011C-3493]
2571846..2572097                   PHAGE_Entero_933W_NC_000924: hypothetical protein; O3K_12625; phage(gi9632536)       1.42e-44            [EscherichiacoliO104:H4str.2011C-3493]
2572108..2573373                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12630; phage(gi725949770)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2573442..2581793                   PHAGE_Stx2_c_86_NC_008464: hypothetical protein; O3K_12635; phage(gi116222027)       0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2581917..2582192                   PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12640; phage(gi725949772)     2.79e-27            [EscherichiacoliO104:H4str.2011C-3493]
complement(2582194..2582697)       PHAGE_Shigel_Stx_NC_029120: EaA protein; O3K_12645; phage(gi985761317)               1.99e-120           [EscherichiacoliO104:H4str.2011C-3493]
complement(2582694..2583209)       PHAGE_Shigel_Ss_VASD_NC_028685: hypothetical protein; O3K_12650; phage(gi966200434)     6.00e-127           [EscherichiacoliO104:H4str.2011C-3493]
complement(2583211..2584047)       PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12655; phage(gi725949776)     4.01e-75            [EscherichiacoliO104:H4str.2011C-3493]
complement(2584034..2584318)       PHAGE_Shigel_POCJ13_NC_025434: hypothetical protein; O3K_12660; phage(gi725949777)     2.22e-64            [EscherichiacoliO104:H4str.2011C-3493]
complement(2584315..2584536)       PHAGE_Shigel_Stx_NC_029120: putative zinc-finger containing protein; O3K_12665; phage(gi985761321)     7.16e-47            [EscherichiacoliO104:H4str.2011C-3493]
complement(2584584..2585219)       PHAGE_Shigel_POCJ13_NC_025434: antirepressor protein; O3K_12670; phage(gi725949778)     1.11e-121           [EscherichiacoliO104:H4str.2011C-3493]
2592360..2592371                   attR                                                                                 N/A                 CCACCACAAAGC

#### region 7 ####
complement(2892626..2892796)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; O3K_14060; phage(gi18249921)     2.16e-13            [EscherichiacoliO104:H4str.2011C-3493]
complement(2892911..2893180)       PHAGE_Entero_HK629_NC_019711: tail fiber assembly protein; O3K_14065; phage(gi428782036)     2.59e-25            [EscherichiacoliO104:H4str.2011C-3493]
2893249..2893905                   hypothetical protein; O3K_14070                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2893960..2894544)       PHAGE_Entero_HK629_NC_019711: tail fiber assembly protein; O3K_14075; phage(gi428782036)     3.16e-133           [EscherichiacoliO104:H4str.2011C-3493]
complement(2894544..2897378)       PHAGE_Entero_HK629_NC_019711: tail fiber protein; O3K_14080; phage(gi428782034)      1.97e-117           [EscherichiacoliO104:H4str.2011C-3493]
2896865..2896876                   attL                                                                                 N/A                 TGGAAGACGCTG
complement(2897530..2898129)       PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; O3K_14085; phage(gi148609401)     5.99e-125           [EscherichiacoliO104:H4str.2011C-3493]
complement(2898197..2901676)       PHAGE_Entero_HK629_NC_019711: tail fiber; O3K_14090; phage(gi428782032)              0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2902155..2902796)       PHAGE_Entero_HK629_NC_019711: tail component protein; O3K_14095; phage(gi428782031)     1.60e-124           [EscherichiacoliO104:H4str.2011C-3493]
complement(2902694..2903437)       PHAGE_Entero_mEp460_NC_019716: tail fiber component; O3K_14100; phage(gi428782332)     1.75e-176           [EscherichiacoliO104:H4str.2011C-3493]
complement(2903442..2904140)       PHAGE_Entero_HK629_NC_019711: minor tail protein; O3K_14105; phage(gi428782029)      2.08e-168           [EscherichiacoliO104:H4str.2011C-3493]
complement(2904140..2904469)       PHAGE_Entero_HK629_NC_019711: minor tail protein; O3K_14110; phage(gi428782028)      4.40e-76            [EscherichiacoliO104:H4str.2011C-3493]
complement(2904466..2907039)       PHAGE_Entero_HK629_NC_019711: tail length tape measure protein; O3K_14115; phage(gi428782027)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2907020..2907433)       PHAGE_Entero_HK629_NC_019711: tail assembly protein; O3K_14120; phage(gi428782026)     3.10e-59            [EscherichiacoliO104:H4str.2011C-3493]
complement(2907460..2907891)       PHAGE_Entero_HK629_NC_019711: minor tail protein; O3K_14125; phage(gi428782025)      7.95e-60            [EscherichiacoliO104:H4str.2011C-3493]
complement(2907905..2908567)       PHAGE_Entero_HK629_NC_019711: major tail protein; O3K_14130; phage(gi428782024)      4.23e-120           [EscherichiacoliO104:H4str.2011C-3493]
complement(2908663..2909058)       PHAGE_Entero_HK629_NC_019711: minor tail protein; O3K_14135; phage(gi428782023)      1.91e-73            [EscherichiacoliO104:H4str.2011C-3493]
complement(2909055..2909630)       PHAGE_Entero_HK629_NC_019711: minor tail protein; O3K_14140; phage(gi428782022)      1.22e-64            [EscherichiacoliO104:H4str.2011C-3493]
complement(2909645..2909998)       PHAGE_Entero_HK629_NC_019711: head-tail connector Fii; O3K_14145; phage(gi428782021)     1.02e-53            [EscherichiacoliO104:H4str.2011C-3493]
complement(2909991..2910359)       PHAGE_Phage_Gifsy_1_NC_010392: bacteriophage accessory DNA packaging protein; Lambda FI homolog; O3K_14150; phage(gi169257229)     6.33e-10            [EscherichiacoliO104:H4str.2011C-3493]
complement(2910411..2911439)       PHAGE_Entero_HK629_NC_019711: major head subunit; O3K_14155; phage(gi428782019)      2.33e-146           [EscherichiacoliO104:H4str.2011C-3493]
complement(2911497..2911844)       PHAGE_Entero_HK629_NC_019711: head decoration protein; O3K_14160; phage(gi428782018)     3.55e-29            [EscherichiacoliO104:H4str.2011C-3493]
complement(2911881..2913386)       PHAGE_Entero_HK629_NC_019711: head maturation protease; O3K_14165; phage(gi428782016)     2.17e-133           [EscherichiacoliO104:H4str.2011C-3493]
complement(2913376..2914968)       PHAGE_Entero_HK629_NC_019711: portal protein; O3K_14170; phage(gi428782015)          0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2914965..2915171)       PHAGE_Entero_HK225_NC_019717: head-tail connector gpW; O3K_14175; phage(gi428782379)     9.36e-18            [EscherichiacoliO104:H4str.2011C-3493]
complement(2915155..2917083)       PHAGE_Entero_HK629_NC_019711: terminase large subunit A; O3K_14180; phage(gi428782013)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2917055..2917603)       PHAGE_Phage_Gifsy_1_NC_010392: DNA packaging protein; small terminase subunit; Lambda Nu1 homolog; O3K_14185; phage(gi169257236)     6.40e-86            [EscherichiacoliO104:H4str.2011C-3493]
complement(2917685..2917957)       hypothetical protein; O3K_14190                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2918004..2918408)       hypothetical protein; O3K_14195                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2918544..2918768)       hypothetical protein; O3K_14200                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2918862..2919149)       hypothetical protein; O3K_14205                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2919228..2919371)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_14210; phage(gi428782374)     1.41e-25            [EscherichiacoliO104:H4str.2011C-3493]
complement(2919368..2919835)       PHAGE_Salmon_HK620_NC_002730: endopeptidase; O3K_14215; phage(gi13559860)            5.99e-88            [EscherichiacoliO104:H4str.2011C-3493]
complement(2919935..2920150)       hypothetical protein; O3K_14220                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2920188..2920400)       PHAGE_Salmon_SEN34_NC_028699: hypothetical protein; O3K_14225; phage(gi966201440)     8.52e-10            [EscherichiacoliO104:H4str.2011C-3493]
complement(2920478..2921011)       PHAGE_Entero_BP_4795_NC_004813: putative R protein; O3K_14230; phage(gi157166033)     1.50e-126           [EscherichiacoliO104:H4str.2011C-3493]
complement(2921054..2921860)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; O3K_14235; phage(gi116221997)       0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2921865..2922080)       PHAGE_Shigel_Ss_VASD_NC_028685: holin lysis protein S; O3K_14240; phage(gi966200466)     1.05e-45            [EscherichiacoliO104:H4str.2011C-3493]
complement(2922231..2924084)       PHAGE_Stx2_c_86_NC_008464: hypothetical protein; O3K_14245; phage(gi116221995)       0.0                 [EscherichiacoliO104:H4str.2011C-3493]
2924345..2924680                   PHAGE_Stx2_c_1717_NC_011357: hypothetical protein; O3K_14250; phage(gi209447168)     2.29e-54            [EscherichiacoliO104:H4str.2011C-3493]
complement(2925128..2925406)       hypothetical protein; O3K_14255                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2925592..2925668)       tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGAATCCAGTACAGCGCGCCA
complement(2925682..2925758)       tRNA                                                                                 N/A                 CCGCCATTAGCTCATCGGGATAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCAAGTCCCCGATGGCGGTCCA
complement(2925766..2925841)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
complement(2925891..2926940)       PHAGE_Entero_phiP27_NC_003356: putative DNA methylase; O3K_14260; phage(gi18249888)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2927091..2927288)       PHAGE_Entero_phiP27_NC_003356: hypothetical protein; O3K_14265; phage(gi18249887)     7.21e-41            [EscherichiacoliO104:H4str.2011C-3493]
complement(2927515..2928336)       PHAGE_Entero_HK225_NC_019717: late gene regulator Q; O3K_14270; phage(gi428782441)     3.35e-114           [EscherichiacoliO104:H4str.2011C-3493]
complement(2928333..2928707)       PHAGE_Shigel_Stx_NC_029120: crossover junction endodeoxyribonuclease rusA; O3K_14275; phage(gi985761276)     9.62e-48            [EscherichiacoliO104:H4str.2011C-3493]
complement(2928720..2929766)       PHAGE_Entero_mEp460_NC_019716: hypothetical protein; O3K_14280; phage(gi428782365)     1.22e-136           [EscherichiacoliO104:H4str.2011C-3493]
2929987..2930166                   hypothetical protein; O3K_14285                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2930208..2930420)       PHAGE_Entero_933W_NC_000924: protein MokW; O3K_14290; phage(gi9632542)               5.34e-37            [EscherichiacoliO104:H4str.2011C-3493]
complement(2930601..2931287)       hypothetical protein; O3K_14295                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(2931441..2931866)       PHAGE_Shigel_Stx_NC_029120: LygF; O3K_14300; phage(gi985761265)                      4.75e-65            [EscherichiacoliO104:H4str.2011C-3493]
complement(2931907..2932869)       PHAGE_Shigel_SfIV_NC_022749: replication protein; O3K_14305; phage(gi557307567)      7.87e-126           [EscherichiacoliO104:H4str.2011C-3493]
complement(2932892..2933317)       PHAGE_Entero_mEp237_NC_019704: CII protein; O3K_14310; phage(gi435439306)            4.38e-06            [EscherichiacoliO104:H4str.2011C-3493]
complement(2933314..2933568)       PHAGE_Escher_HK75_NC_016160: regulatory protein cro; O3K_14315; phage(gi356870715)     3.23e-24            [EscherichiacoliO104:H4str.2011C-3493]
2933648..2934067                   PHAGE_Entero_HK022_NC_002166: regulatory protein cI; O3K_14320; phage(gi19343388)     1.14e-25            [EscherichiacoliO104:H4str.2011C-3493]
2934364..2934516                   PHAGE_Salico_CGphi29_NC_020844: hypothetical protein; O3K_14325; phage(gi472340166)     1.57e-12            [EscherichiacoliO104:H4str.2011C-3493]
2934528..2934866                   PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; O3K_14330; phage(gi966197735)     1.43e-10            [EscherichiacoliO104:H4str.2011C-3493]
complement(2934855..2935049)       hypothetical protein; O3K_14335                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2935616..2935804                   regulator of cell division encoded by prophage; O3K_14340                            N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2935801..2935992                   hypothetical protein; O3K_14345                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2936085..2938556                   PHAGE_Entero_mEp460_NC_019716: putative exonuclease; O3K_14350; phage(gi428782342)     4.55e-67            [EscherichiacoliO104:H4str.2011C-3493]
2938621..2938869                   Excisionase; O3K_14355                                                               N/A                 [EscherichiacoliO104:H4str.2011C-3493]
2938743..2938754                   attR                                                                                 N/A                 TGGAAGACGCTG
2938847..2939977                   PHAGE_Entero_HK022_NC_002166: integrase; O3K_14360; phage(gi9634144)                 4.29e-66            [EscherichiacoliO104:H4str.2011C-3493]

#### region 8 ####
complement(3140461..3141303)       PHAGE_Pseudo_phiPSA1_NC_024365: DNA restriction methylase; O3K_15395; phage(gi658307732)     1.05e-13            [EscherichiacoliO104:H4str.2011C-3493]
complement(3141388..3141585)       hypothetical protein; O3K_15400                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3141597..3142085)       hypothetical protein; O3K_15405                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3142085..3142459)       hypothetical protein; O3K_15410                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3142550..3142903)       CP4-44 prophage YeeV-YeeU toxin-antitoxin system toxin; O3K_15415                    N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3142979..3143200)       PHAGE_Klebsi_vB_KpnP_KpV71_NC_031246: hypothetical protein; O3K_15420; phage(gi100007)     2.61e-15            [EscherichiacoliO104:H4str.2011C-3493]
complement(3143263..3143739)       radC-like protein YeeS; O3K_15425                                                    N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3143755..3144228)       PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; O3K_15430; phage(gi162135127)      2.16e-16            [EscherichiacoliO104:H4str.2011C-3493]
complement(3144322..3144567)       hypothetical protein; O3K_15435                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3144567..3145388)       PHAGE_Cronob_vB_CsaM_GAP32_NC_019401: hypothetical protein; O3K_15440; phage(gi414086954)     7.13e-57            [EscherichiacoliO104:H4str.2011C-3493]
complement(3145609..3146019)       PHAGE_Erwini_vB_EamM_Asesino_NC_031107: tail tube protein; O3K_15445; phage(gi100191)     5.80e-10            [EscherichiacoliO104:H4str.2011C-3493]
complement(3146035..3146718)       hypothetical protein; O3K_15450                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3146852..3147922)       PHAGE_Rhodot_RM378_NC_004735: hypothetical protein; O3K_15455; phage(gi30044012)     9.35e-09            [EscherichiacoliO104:H4str.2011C-3493]
complement(3147919..3148824)       hypothetical protein; O3K_15460                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3148821..3151217)       hypothetical protein; O3K_15465                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3153689..3154561)       GTP-binding protein; O3K_15485                                                       N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3155373..3155798)       PHAGE_Pseudo_MD8_NC_031091: hypothetical protein; O3K_15490; phage(gi100010)         1.16e-07            [EscherichiacoliO104:H4str.2011C-3493]
complement(3155956..3157197)       PHAGE_Gordon_Cucurbita_NC_031029: hypothetical protein; O3K_15495; phage(gi100110)     2.89e-21            [EscherichiacoliO104:H4str.2011C-3493]
complement(3157629..3158204)       PHAGE_Caulob_CcrColossus_NC_019406: putative TerD-like bacterial stress protein; O3K_15500; phage(gi414088275)     5.04e-41            [EscherichiacoliO104:H4str.2011C-3493]
complement(3158273..3158851)       PHAGE_Caulob_CcrColossus_NC_019406: putative TerD-like bacterial stress protein; O3K_15505; phage(gi414088275)     3.15e-42            [EscherichiacoliO104:H4str.2011C-3493]
complement(3158900..3159940)       PHAGE_Escher_phAPEC8_NC_020079: integral membrane protein TerC; O3K_15510; phage(gi448260482)     1.90e-99            [EscherichiacoliO104:H4str.2011C-3493]
complement(3159963..3160418)       PHAGE_Erwini_vB_EamM_ChrisDB_NC_031126: hypothetical protein; O3K_15515; phage(gi100004)     8.36e-08            [EscherichiacoliO104:H4str.2011C-3493]
complement(3160441..3161598)       putative tellurium resistance protein TerA; O3K_15520                                N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3161598..3162179)       PHAGE_Bacill_CP_51_NC_025423: putative resistance protein; O3K_15525; phage(gi725949538)     1.50e-20            [EscherichiacoliO104:H4str.2011C-3493]

#### region 9 ####
3254121..3255449                   PHAGE_Clostr_c_st_NC_007581: putative uracil permease; O3K_15955; phage(gi80159777)     6.27e-28            [EscherichiacoliO104:H4str.2011C-3493]
complement(3255532..3255705)       hypothetical protein; O3K_15960                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3256637..3265018)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_15970; phage(gi410491673)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3264007..3264018                   attL                                                                                 N/A                 CCATGGCATTCA
complement(3265088..3266353)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_15975; phage(gi410491672)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3266364..3266615)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_15980; phage(gi410491671)     6.20e-51            [EscherichiacoliO104:H4str.2011C-3493]
complement(3266625..3267071)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_15985; phage(gi410491670)     1.31e-102           [EscherichiacoliO104:H4str.2011C-3493]
complement(3267074..3267730)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_15990; phage(gi410491669)     1.07e-155           [EscherichiacoliO104:H4str.2011C-3493]
complement(3267824..3268225)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_15995; phage(gi410491668)     1.24e-95            [EscherichiacoliO104:H4str.2011C-3493]
complement(3268282..3268422)       PHAGE_Escher_P13374_NC_018846: prophage host toxic membrane protein; O3K_16000; phage(gi410491667)     5.34e-27            [EscherichiacoliO104:H4str.2011C-3493]
complement(3268655..3269389)       PHAGE_Escher_P13374_NC_018846: outer membrane lom precursor; O3K_16005; phage(gi410491666)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3269480..3270097)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16010; phage(gi410491665)     2.39e-152           [EscherichiacoliO104:H4str.2011C-3493]
complement(3270103..3270381)       PHAGE_Escher_phi191_NC_028660: hypothetical protein; O3K_16015; phage(gi966198092)     1.02e-63            [EscherichiacoliO104:H4str.2011C-3493]
complement(3270396..3271664)       PHAGE_Entero_Min27_NC_010237: hypothetical protein; O3K_16020; phage(gi170783675)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3271661..3273352)       PHAGE_Escher_phi191_NC_028660: hypothetical protein; O3K_16025; phage(gi966198094)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3273520..3274032)       PHAGE_Escher_P13374_NC_018846: tail fibre adesine; O3K_16030; phage(gi410491661)     4.72e-121           [EscherichiacoliO104:H4str.2011C-3493]
complement(3274119..3276311)       PHAGE_Escher_P13374_NC_018846: phage tail fibre; O3K_16035; phage(gi410491660)       0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3276308..3276958)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16040; phage(gi410491659)     3.73e-157           [EscherichiacoliO104:H4str.2011C-3493]
complement(3276958..3277521)       PHAGE_Entero_933W_NC_000924: hypothetical protein; O3K_16045; phage(gi9632523)       1.71e-136           [EscherichiacoliO104:H4str.2011C-3493]
complement(3277505..3277966)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16050; phage(gi410491657)     4.82e-109           [EscherichiacoliO104:H4str.2011C-3493]
complement(3278016..3278405)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16055; phage(gi410491656)     1.20e-87            [EscherichiacoliO104:H4str.2011C-3493]
complement(3278461..3279675)       PHAGE_Escher_P13374_NC_018846: structural protein; O3K_16060; phage(gi410491655)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3279699..3280706)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16065; phage(gi410491654)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3280864..3283008)       PHAGE_Escher_P13374_NC_018846: phage portal protein; O3K_16070; phage(gi410491653)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3283008..3284714)       PHAGE_Escher_P13374_NC_018846: phage terminase large subunit; O3K_16075; phage(gi410491652)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3284695..3285501)       PHAGE_Escher_P13374_NC_018846: phage terminase small subunit; O3K_16080; phage(gi410491651)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3285794..3286345)       PHAGE_Escher_P13374_NC_018846: regulatory protein; O3K_16085; phage(gi410491650)     1.80e-135           [EscherichiacoliO104:H4str.2011C-3493]
complement(3286548..3286976)       PHAGE_Escher_P13374_NC_018846: endopeptidase; O3K_16090; phage(gi410491649)          7.79e-100           [EscherichiacoliO104:H4str.2011C-3493]
complement(3286988..3287122)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16095; phage(gi410491648)     6.71e-22            [EscherichiacoliO104:H4str.2011C-3493]
complement(3287137..3287706)       PHAGE_Escher_P13374_NC_018846: antirepressor; O3K_16100; phage(gi410491647)          2.05e-140           [EscherichiacoliO104:H4str.2011C-3493]
complement(3287980..3288513)       PHAGE_Escher_P13374_NC_018846: lysis protein, lysozyme; O3K_16105; phage(gi410491646)     8.99e-129           [EscherichiacoliO104:H4str.2011C-3493]
complement(3288518..3288733)       PHAGE_Escher_P13374_NC_018846: lysis protein, holin; O3K_16110; phage(gi410491645)     9.28e-46            [EscherichiacoliO104:H4str.2011C-3493]
complement(3288811..3289056)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16115; phage(gi410491644)     1.77e-50            [EscherichiacoliO104:H4str.2011C-3493]
complement(3289097..3289276)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16120; phage(gi410491643)     3.06e-38            [EscherichiacoliO104:H4str.2011C-3493]
complement(3289413..3291350)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16125; phage(gi410491642)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3291836..3292105)       PHAGE_Escher_P13374_NC_018846: shiga toxin 2 subunit B; O3K_16130; phage(gi410491639)     4.42e-61            [EscherichiacoliO104:H4str.2011C-3493]
complement(3292117..3293076)       PHAGE_Escher_P13374_NC_018846: shiga toxin 2 subunit A; O3K_16135; phage(gi410491638)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3293167..3293243)       tRNA                                                                                 N/A                 GCGTTGTTAGCTCAGCCGGACAGAGCAATTGCCTTCTGAGCAATCGGTCACTGGTTCGAATCCAGTACAACGCGCCA
complement(3293257..3293333)       tRNA                                                                                 N/A                 CCGCCATTAGCTCATCGGGACAGAGCGCCAGCCTTCGAAGCTGGCTGCGCGGGGTTCGAGTCCTCGATGGCGGTCCA
complement(3293343..3293418)       tRNA                                                                                 N/A                 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATCCAGCAAGGGCCACCA
complement(3293459..3293557)       PHAGE_Stx2_c_86_NC_008464: DNA modification methylase; O3K_16140; phage(gi116222073)     1.86e-15            [EscherichiacoliO104:H4str.2011C-3493]
complement(3293860..3294294)       PHAGE_Escher_P13374_NC_018846: antiterminator Q; O3K_16145; phage(gi410491636)       5.45e-105           [EscherichiacoliO104:H4str.2011C-3493]
complement(3294287..3294481)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16150; phage(gi410491635)     6.66e-42            [EscherichiacoliO104:H4str.2011C-3493]
complement(3294478..3295041)       PHAGE_Escher_P13374_NC_018846: recombination endonuclease; O3K_16155; phage(gi410491634)     1.38e-137           [EscherichiacoliO104:H4str.2011C-3493]
complement(3295049..3295498)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16160; phage(gi410491633)     1.15e-108           [EscherichiacoliO104:H4str.2011C-3493]
complement(3295498..3296469)       PHAGE_Escher_P13374_NC_018846: primase; O3K_16165; phage(gi410491632)                0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3296459..3297979)       PHAGE_Escher_P13374_NC_018846: helicase; O3K_16170; phage(gi410491631)               0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3297973..3298350)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16175; phage(gi410491630)     6.56e-86            [EscherichiacoliO104:H4str.2011C-3493]
complement(3298558..3298851)       PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16180; phage(gi410491629)     1.35e-60            [EscherichiacoliO104:H4str.2011C-3493]
complement(3298882..3299085)       PHAGE_Escher_P13374_NC_018846: cro repressor; O3K_16185; phage(gi410491628)          4.43e-42            [EscherichiacoliO104:H4str.2011C-3493]
3299181..3299894                   PHAGE_Escher_P13374_NC_018846: prophage repressor CI; O3K_16190; phage(gi410491627)     1.27e-177           [EscherichiacoliO104:H4str.2011C-3493]
3299989..3301458                   PHAGE_Escher_P13374_NC_018846: DNA methylase; O3K_16195; phage(gi410491626)          0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3301455..3302408                   PHAGE_Escher_P13374_NC_018846: restriction endonuclease; O3K_16200; phage(gi410491625)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3303037..3303810                   PHAGE_Escher_P13374_NC_018846: regulatory protein; O3K_16205; phage(gi410491624)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3304267..3304740                   PHAGE_Escher_P13374_NC_018846: antitermination; O3K_16210; phage(gi410491621)        4.07e-114           [EscherichiacoliO104:H4str.2011C-3493]
3304811..3305023                   PHAGE_Escher_P13374_NC_018846: host killing protein; O3K_16215; phage(gi410491620)     8.91e-45            [EscherichiacoliO104:H4str.2011C-3493]
3305095..3305316                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16220; phage(gi410491619)     2.69e-48            [EscherichiacoliO104:H4str.2011C-3493]
3305337..3305618                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16225; phage(gi410491618)     2.68e-63            [EscherichiacoliO104:H4str.2011C-3493]
3305635..3306585                   PHAGE_Escher_P13374_NC_018846: recombinase; O3K_16230; phage(gi410491617)            0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3306582..3307271                   PHAGE_Escher_P13374_NC_018846: exonuclease; O3K_16235; phage(gi410491616)            1.10e-172           [EscherichiacoliO104:H4str.2011C-3493]
3307271..3307858                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16240; phage(gi410491615)     3.87e-145           [EscherichiacoliO104:H4str.2011C-3493]
3307933..3308280                   PHAGE_Escher_TL_2011c_NC_019442: hypothetical protein; O3K_16245; phage(gi418487086)     1.85e-79            [EscherichiacoliO104:H4str.2011C-3493]
3308344..3309165                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16250; phage(gi410491612)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3309242..3309637                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16255; phage(gi410491611)     3.68e-94            [EscherichiacoliO104:H4str.2011C-3493]
3309788..3310513                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16260; phage(gi410491610)     1.13e-175           [EscherichiacoliO104:H4str.2011C-3493]
3310510..3310917                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16265; phage(gi410491609)     6.99e-96            [EscherichiacoliO104:H4str.2011C-3493]
3310919..3311110                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16270; phage(gi410491608)     2.12e-39            [EscherichiacoliO104:H4str.2011C-3493]
3311113..3312009                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16275; phage(gi410491607)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3312002..3312100                   hypothetical protein; O3K_16280                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
3312365..3313003                   PHAGE_Escher_P13374_NC_018846: antirepressor antB; O3K_16285; phage(gi410491605)     1.40e-159           [EscherichiacoliO104:H4str.2011C-3493]
3313059..3313490                   PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; O3K_16290; phage(gi966197722)     5.01e-101           [EscherichiacoliO104:H4str.2011C-3493]
3313487..3314113                   PHAGE_Escher_P13374_NC_018846: methylase; O3K_16295; phage(gi410491602)              1.94e-155           [EscherichiacoliO104:H4str.2011C-3493]
3314073..3314285                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16300; phage(gi410491601)     1.58e-43            [EscherichiacoliO104:H4str.2011C-3493]
3314321..3314674                   PHAGE_Escher_P13374_NC_018846: hypothetical protein; O3K_16305; phage(gi410491600)     2.11e-79            [EscherichiacoliO104:H4str.2011C-3493]
3315039..3315290                   PHAGE_Escher_TL_2011c_NC_019442: putative bacteriophage protein; O3K_16310; phage(gi418487053)     9.92e-56            [EscherichiacoliO104:H4str.2011C-3493]
3315321..3315620                   PHAGE_Escher_P13374_NC_018846: excisionase; O3K_16315; phage(gi410491597)            6.40e-69            [EscherichiacoliO104:H4str.2011C-3493]
3315362..3315373                   attR                                                                                 N/A                 CCATGGCATTCA
3315673..3316983                   PHAGE_Escher_P13374_NC_018846: phage integrase; O3K_16320; phage(gi410491596)        0.0                 [EscherichiacoliO104:H4str.2011C-3493]

#### region 10 ####
3567415..3567426                   attL                                                                                 N/A                 GCCTTATCCGGC
3570399..3570410                   attL                                                                                 N/A                 ATCATCAGGGAG
3577927..3579216                   PHAGE_Mycoba_Alice_NC_028986: gp185; O3K_17485; phage(gi971763384)                   2.93e-05            [EscherichiacoliO104:H4str.2011C-3493]
3579275..3579751                   putative kinase inhibitor protein; O3K_17490                                         N/A                 [EscherichiacoliO104:H4str.2011C-3493]
3580497..3581828                   PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; O3K_17495; phage(gi100150)       2.89e-24            [EscherichiacoliO104:H4str.2011C-3493]
complement(3581902..3582486)       PHAGE_Entero_lambda_NC_001416: Putative fiber assembly protein; O3K_17500; phage(gi9626269)     4.90e-135           [EscherichiacoliO104:H4str.2011C-3493]
complement(3582486..3584195)       PROPHAGE_Escher_MG1655: Qin prophage; predicted side tail fibre assembly protein; O3K_17505; phage(gi16129506)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3584173..3585063                   PHAGE_Entero_lambda_NC_001416: hypothetical protein; O3K_17510; phage(gi9626267)     1.91e-17            [EscherichiacoliO104:H4str.2011C-3493]
3585451..3585624                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; O3K_17515; phage(gi157166059)     4.02e-34            [EscherichiacoliO104:H4str.2011C-3493]
complement(3585625..3586224)       PHAGE_Entero_cdtI_NC_009514: putative Lom-like outer membrane protein; O3K_17520; phage(gi148609401)     2.47e-142           [EscherichiacoliO104:H4str.2011C-3493]
complement(3586295..3589792)       PHAGE_Entero_lambda_NC_001416: tail:host specificity protein; O3K_17525; phage(gi9626264)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3589853..3590524)       PHAGE_Entero_lambda_NC_001416: tail component; O3K_17530; phage(gi9626263)           4.80e-158           [EscherichiacoliO104:H4str.2011C-3493]
complement(3590422..3591165)       PHAGE_Entero_mEp460_NC_019716: tail fiber component; O3K_17535; phage(gi428782332)     1.30e-178           [EscherichiacoliO104:H4str.2011C-3493]
complement(3591171..3591869)       PHAGE_Entero_lambda_NC_001416: tail component; O3K_17540; phage(gi9626261)           6.96e-171           [EscherichiacoliO104:H4str.2011C-3493]
complement(3591869..3592198)       PHAGE_Entero_lambda_NC_001416: tail component; O3K_17545; phage(gi9626260)           4.74e-66            [EscherichiacoliO104:H4str.2011C-3493]
complement(3592195..3594756)       PHAGE_Entero_lambda_NC_001416: tail component; O3K_17550; phage(gi9626259)           0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3594749..3595183)       PHAGE_Entero_lambda_NC_001416: tail component; O3K_17555; phage(gi9626258)           9.08e-102           [EscherichiacoliO104:H4str.2011C-3493]
complement(3595165..3595587)       PHAGE_Entero_lambda_NC_001416: tail component; O3K_17560; phage(gi9626257)           7.97e-85            [EscherichiacoliO104:H4str.2011C-3493]
complement(3595603..3596343)       PHAGE_Entero_lambda_NC_001416: tail component; O3K_17565; phage(gi9626256)           4.19e-171           [EscherichiacoliO104:H4str.2011C-3493]
complement(3596351..3596746)       PHAGE_Entero_lambda_NC_001416: tail component; O3K_17570; phage(gi9626255)           2.45e-89            [EscherichiacoliO104:H4str.2011C-3493]
complement(3596743..3597321)       PHAGE_Entero_lambda_NC_001416: tail component; O3K_17575; phage(gi9626254)           2.64e-132           [EscherichiacoliO104:H4str.2011C-3493]
complement(3597333..3597686)       PHAGE_Entero_lambda_NC_001416: head-tail joining protein; O3K_17580; phage(gi9626253)     3.49e-77            [EscherichiacoliO104:H4str.2011C-3493]
complement(3597698..3598093)       PHAGE_Entero_lambda_NC_001416: DNA packaging protein; O3K_17585; phage(gi9626252)     3.75e-74            [EscherichiacoliO104:H4str.2011C-3493]
complement(3598135..3599160)       PHAGE_Entero_lambda_NC_001416: capsid component; O3K_17590; phage(gi9626251)         0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3599216..3599548)       PHAGE_Entero_lambda_NC_001416: head-DNA stabilization protein; O3K_17595; phage(gi9626250)     2.28e-73            [EscherichiacoliO104:H4str.2011C-3493]
complement(3599558..3600877)       PHAGE_Entero_lambda_NC_001416: capsid component; O3K_17600; phage(gi9626248)         0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3600858..3602459)       PHAGE_Entero_lambda_NC_001416: capsid component; O3K_17605; phage(gi9626247)         0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3602456..3602662)       PHAGE_Entero_lambda_NC_001416: head-tail joining protein; O3K_17610; phage(gi9626246)     3.91e-43            [EscherichiacoliO104:H4str.2011C-3493]
complement(3602659..3602877)       PHAGE_Entero_lambda_NC_001416: DNA packaging protein; O3K_17615; phage(gi9626245)     2.67e-40            [EscherichiacoliO104:H4str.2011C-3493]
complement(3602922..3604583)       PHAGE_Entero_lambda_NC_001416: DNA packaging protein; O3K_17620; phage(gi9626245)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3604558..3605103)       PHAGE_Entero_lambda_NC_001416: DNA packaging protein; O3K_17625; phage(gi9626244)     3.18e-130           [EscherichiacoliO104:H4str.2011C-3493]
3605492..3605725                   PHAGE_Entero_BP_4795_NC_004813: hypothetical protein; O3K_17630; phage(gi157166037)     2.17e-26            [EscherichiacoliO104:H4str.2011C-3493]
3605782..3606192                   PHAGE_Entero_lambda_NC_001416: putative envelope protein; O3K_17635; phage(gi19263396)     7.92e-71            [EscherichiacoliO104:H4str.2011C-3493]
complement(3606542..3607063)       PHAGE_Entero_HK544_NC_019767: hypothetical protein; O3K_17640; phage(gi428783277)     3.64e-127           [EscherichiacoliO104:H4str.2011C-3493]
complement(3607268..3607705)       PHAGE_Entero_IME10_NC_019501: Rz lysis protein; O3K_17645; phage(gi422934278)        1.04e-96            [EscherichiacoliO104:H4str.2011C-3493]
complement(3607702..3608199)       PHAGE_Entero_SfI_NC_027339: lysozyme; O3K_17650; phage(gi849250312)                  3.09e-117           [EscherichiacoliO104:H4str.2011C-3493]
complement(3608199..3608414)       PHAGE_Entero_VT2phi_272_NC_028656: holin; O3K_17655; phage(gi966197762)              4.54e-37            [EscherichiacoliO104:H4str.2011C-3493]
3609003..3610085                   outer membrane porin, DLP12 prophage; O3K_17660                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3610274..3610657)       PHAGE_Shigel_Stx_NC_029120: antitermination protein Q; O3K_17665; phage(gi985761278)     3.23e-71            [EscherichiacoliO104:H4str.2011C-3493]
complement(3610743..3610883)       PHAGE_Entero_mEp237_NC_019704: hypothetical protein; O3K_17670; phage(gi435439319)     1.75e-14            [EscherichiacoliO104:H4str.2011C-3493]
complement(3610880..3611107)       PHAGE_Entero_mEp237_NC_019704: Holliday junction resolvase RusA; O3K_17675; phage(gi435439318)     1.12e-43            [EscherichiacoliO104:H4str.2011C-3493]
complement(3611238..3611528)       PHAGE_Entero_mEp237_NC_019704: hypothetical protein; O3K_17680; phage(gi435439317)     4.57e-61            [EscherichiacoliO104:H4str.2011C-3493]
complement(3611521..3611691)       PHAGE_Escher_HK639_NC_016158: NinE; O3K_17685; phage(gi356870663)                    5.82e-20            [EscherichiacoliO104:H4str.2011C-3493]
complement(3611691..3612146)       PHAGE_Cronob_phiES15_NC_018454: hypothetical protein; O3K_17690; phage(gi401817579)     1.97e-80            [EscherichiacoliO104:H4str.2011C-3493]
complement(3612341..3612847)       hypothetical protein; O3K_17695                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3613169..3613408)       antirepressor protein; O3K_17700                                                     N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3613520..3614314)       putative phage recombinase; O3K_17705                                                N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3614271..3614513)       multidrug efflux protein; O3K_17710                                                  N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(3614560..3614862)       PHAGE_Entero_lambda_NC_001416: ren exclusion protein; O3K_17715; phage(gi9626297)     2.66e-55            [EscherichiacoliO104:H4str.2011C-3493]
complement(3614859..3615560)       PHAGE_Entero_lambda_NC_001416: DNA replication protein; O3K_17720; phage(gi9626296)     9.67e-167           [EscherichiacoliO104:H4str.2011C-3493]
complement(3615557..3616486)       PHAGE_Entero_lambda_NC_001416: DNA replication protein; O3K_17725; phage(gi9626295)     8.23e-139           [EscherichiacoliO104:H4str.2011C-3493]
complement(3616573..3617112)       PHAGE_Entero_phi80_NC_021190: CII decision making protein; O3K_17730; phage(gi824479625)     8.02e-86            [EscherichiacoliO104:H4str.2011C-3493]
complement(3617182..3617412)       PHAGE_Escher_HK639_NC_016158: cro; O3K_17735; phage(gi356870651)                     2.72e-25            [EscherichiacoliO104:H4str.2011C-3493]
3617518..3618207                   PHAGE_Entero_ST104_NC_005841: CI; O3K_17740; phage(gi46358671)                       3.30e-123           [EscherichiacoliO104:H4str.2011C-3493]
3618805..3619011                   PHAGE_Entero_HK225_NC_019717: Kil protein; O3K_17745; phage(gi428782413)             7.08e-37            [EscherichiacoliO104:H4str.2011C-3493]
3619087..3619383                   PHAGE_Entero_lambda_NC_001416: host-nuclease inhibitor protein Gam; O3K_17750; phage(gi9626282)     8.95e-66            [EscherichiacoliO104:H4str.2011C-3493]
3619389..3620174                   PHAGE_Entero_933W_NC_000924: Bet protein; O3K_17755; phage(gi9632480)                0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3620171..3620851                   PHAGE_Entero_YYZ_2008_NC_011356: putative exonuclease; O3K_17760; phage(gi209427739)     5.02e-169           [EscherichiacoliO104:H4str.2011C-3493]
3620842..3621030                   PHAGE_Entero_VT2_Sakai_NC_000902: hypothetical protein; O3K_17765; phage(gi9633408)     5.15e-40            [EscherichiacoliO104:H4str.2011C-3493]
3621003..3621194                   PHAGE_Entero_lambda_NC_001416: hypothetical protein; O3K_17770; phage(gi9626278)     4.06e-36            [EscherichiacoliO104:H4str.2011C-3493]
3621191..3621274                   hypothetical protein; O3K_17775                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
3621205..3621486                   PHAGE_Entero_933W_NC_000924: hypothetical protein; O3K_17780; phage(gi9632476)       2.31e-64            [EscherichiacoliO104:H4str.2011C-3493]
3621501..3621512                   attR                                                                                 N/A                 ATCATCAGGGAG
3621585..3621806                   PHAGE_Stx2_vB_EcoP_24B_NC_027984: putative C4 zinc finger protein; O3K_17785; phage(gi937456240)     9.03e-46            [EscherichiacoliO104:H4str.2011C-3493]
complement(3622017..3622547)       hypothetical protein; O3K_17790                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
3622862..3623029                   PHAGE_Entero_lambda_NC_001416: hypothetical protein; O3K_17795; phage(gi19263393)     3.90e-34            [EscherichiacoliO104:H4str.2011C-3493]
3623069..3623287                   PHAGE_Entero_lambda_NC_001416: Excisionase; O3K_17800; phage(gi9626274)              1.58e-46            [EscherichiacoliO104:H4str.2011C-3493]
3623265..3624335                   PHAGE_Entero_lambda_NC_001416: integration protein; O3K_17805; phage(gi9626273)      0.0                 [EscherichiacoliO104:H4str.2011C-3493]
3625788..3625799                   attR                                                                                 N/A                 GCCTTATCCGGC

#### region 11 ####
4122232..4122244                   attL                                                                                 N/A                 CTGTATTTGCGCC
4128690..4128710                   attL                                                                                 N/A                 ATACCCCCAAAAGTACCCCCA
complement(4135827..4137959)       PHAGE_Staphy_PT1028_NC_007045: ORF001; O3K_20135; phage(gi66395165)                  1.24e-07            [EscherichiacoliO104:H4str.2011C-3493]
complement(4137956..4138246)       hypothetical protein; O3K_20140                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(4138251..4138451)       PHAGE_Salmon_Fels_1_NC_010391: hypothetical protein; O3K_20145; phage(gi169257165)     2.35e-05            [EscherichiacoliO104:H4str.2011C-3493]
complement(4138444..4138809)       hypothetical protein; O3K_20150                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(4138820..4139167)       hypothetical protein; O3K_20155                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
4139391..4139663                   hypothetical protein; O3K_20160                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(4140381..4141181)       PHAGE_Pseudo_PS_1_NC_029066: antirepressor; O3K_20165; phage(gi985757712)            3.31e-26            [EscherichiacoliO104:H4str.2011C-3493]
complement(4141260..4141382)       PHAGE_Burkho_KL3_NC_015266: gp52; O3K_20170; phage(gi327198097)                      3.50e-05            [EscherichiacoliO104:H4str.2011C-3493]
complement(4141652..4142449)       hypothetical protein; O3K_20175                                                      N/A                 [EscherichiacoliO104:H4str.2011C-3493]
complement(4142578..4143792)       PROPHAGE_Escher_CFT073: putative prophage integrase; O3K_20180; phage(gi26250313)     0.0                 [EscherichiacoliO104:H4str.2011C-3493]
4143824..4143844                   attR                                                                                 N/A                 ATACCCCCAAAAGTACCCCCA
4144120..4145397                   PROPHAGE_Escher_Sakai: putative integrase; O3K_20185; phage(gi15834496)              3.79e-11            [EscherichiacoliO104:H4str.2011C-3493]
complement(4145478..4146155)       PHAGE_Escher_Av_05_NC_025830: putative tail tape measure protein; O3K_20190; phage(gi730985080)     9.61e-15            [EscherichiacoliO104:H4str.2011C-3493]
complement(4146203..4148044)       PHAGE_Entero_phi92_NC_023693: Phi92_gp134; O3K_20195; phage(gi726647068)             1.54e-22            [EscherichiacoliO104:H4str.2011C-3493]
4148353..4148365                   attR                                                                                 N/A                 CTGTATTTGCGCC
