gi|407484675|ref|NC_018659.1|  Escherichia coli O104:H4 str. 2011C-3493 plasmid pG-EA11, complete 88544, gc%: 49.73%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(41980..44454)           PROPHAGE_Xantho_33913: Tn5041 transposase; O3K_25777; phage(gi21231545)              5.44e-31            EscherichiacoliO104H4str2011C3493MRLWNKLALIPSAEQRSQLEMLLGPTDCSRLSLLESLKKGPVTISGPAFNEAIERWKTLNDFGLHAENLSTLPAVRLKNLARYAGMTSVFNIARMSPQKRMAVLVAFVLAWETLALDDALDVLDAMLAVIIRDARKIGQKKRLRSLKDLDKSALALASACSYLLKEETPDESIRAEVFSYIPRQKLAEIITLVREIARPSDDNFHEEMVEQYGRVRRFLPHLLNTVKFSSAPAGVTTLNACDYLSREFSSRRQFFDDAPTEIISRSWKRLVINKEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPRARLLQGADWQANRIKVYRSLGHPTDPQEAIKSLGHQLDSRYRQVAARLCENEAVELDVSGPKPRLTISPLASLDEPDSLKRLSKMISDLLPPVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMAEACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQIWGGGEVASADGMRFVTPVRTINAGPNRKYFGNNRGITWYNFVSDQYSGFHGIVIPGTLRDSIFVLEGLLEQETGLNPTEIMTDTAGASELVFGLFWLLGYQFSPRLADAGASVFWRMDHDADYGVLNDIARGQSDPRKIVLQWDEMIRTAGSLKLGKVQVSVLVRSLLKSERPSGLTQAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYTDGQEDQLGTLGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINMLGHYSFTLAELVTKGHLRPLKEASEAENVA
44849..45121                       hypothetical protein; O3K_25782                                                      N/A                 EscherichiacoliO104H4str2011C3493MVLNFDDRGTVTHRAILGETCTVLEMAAGTWHAVLSLDTGGIIFEVKHGGYQPVAADDYAHWAPAEGEPGTTELMAWYAQAQVGDSTFAV
complement(45168..46043)           PHAGE_Salmon_SJ46_NC_031129: RNA ligase 1; O3K_25787; phage(gi100066)                1.86e-170           EscherichiacoliO104H4str2011C3493MVKKSLRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRRDVLASAAKIVTDGL
complement(46196..46318)           hypothetical protein; O3K_25792                                                      N/A                 EscherichiacoliO104H4str2011C3493MKNVWYNKNIINKIECCSVDNLQSLLSIIAAKMKSMIYQK
complement(46299..47561)           PHAGE_Salmon_SJ46_NC_031129: hypothetical protein; O3K_25797; phage(gi100067)        3.71e-53            EscherichiacoliO104H4str2011C3493MINKIDFKAKNLTSNAGLFLLLENAKSNGIFDFIENDLVFDNDSTNKIKMNHIKTMLCGHFIGIDKLERLKLLQNDPLVNEFDISVKEPETVSRFLGNFNFKTTQMFRDINFKVFKKLLTKSKLTSITIDIDSSVINVEGHQEGASKGYNPKKLGNRCYNIQFAFCDELKAYVTGFVRSGNTYTANGAAEMIKEIVANIKSDDLEILFRMDSGYFDEKIIETIESLGCKYLIKAKSYSTLTSQATNSSIVFVKGEEGRETTELYTKLVKWEKDRRFVVSRVLKPEKERAQLSLLEGSEYDYFFFVTNTTLLSEKVVIYYEKRGNAENYIKEAKYDMAVGHLLLKSFWANEAVFQMMMLSYNLFLLFKFDSLDSSEYRQQIKTFRLKYVFLAAKIIKTARYVIMKLSENYPYKGVYEKCLV
complement(47743..47961)           transposase; O3K_25802                                                               N/A                 EscherichiacoliO104H4str2011C3493MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSRGDHNRLGIALQIGCVRFLGTFLTDMNHT
48125..48682                       PHAGE_Salisa_1_NC_017983: hypothetical protein; O3K_25807; phage(gi388570712)        1.41e-29            EscherichiacoliO104H4str2011C3493MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTDREGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGDMGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRRRTVDRNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERAS
48865..49725                       PHAGE_Escher_RCS47_NC_042128: hypothetical protein; O3K_25812; phage(gi100022)       9.15e-135           EscherichiacoliO104H4str2011C3493MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASLIKHW
complement(49994..50296)           hypothetical protein; O3K_25817                                                      N/A                 EscherichiacoliO104H4str2011C3493MRNRANTSPRDEAAFINGGTAGLDNTKKSSDKSSVVSKAKPVSISFFEENLKDIDALITAEMVSGKGRVNRSDVVRAAVEALKTLSKTEVSRLIAEVKQR
complement(50293..50826)           PHAGE_Sodali_phiSG1_NC_007902: ParA-like protein; O3K_25822; phage(gi89886027)       2.76e-20            EscherichiacoliO104H4str2011C3493MIIVDADDQKSVLTWYNNRPEDLPHIPVTGATGNIKAMLKEHEKSYDFVIADCAGRDSAEMRSGLMAADVFISPLRPSQMDLDVVPHTCSVFTAAKDFNEDVRGYLVLNMTPTNMFVNEANEAAEVLKDYPEMHLANSRVCDRKAHRDAWAESMTIFETQNDKAQQEIEALVKEVIL
complement(51123..52394)           PHAGE_Cronob_ENT39118_NC_019934: DNA polymerase; O3K_25827; phage(gi431811050)       0.0                 EscherichiacoliO104H4str2011C3493MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSPEAKALGIRMGQPWFQVRQMRLEKKIHVFSSNYALYHSMSQRVMAVLESLSPAVEPYSIDEMFIDLRGINHCISPEIFGHQLREQVKSWTGLTMGVGIAPTKTLAKSAQWATKQWPQFSGVVALTAENRNRTLKLLGLQPVGEVWGVGRRLTEKLNALGINTALQLAQANTAFIRKNFSVILERTVRELNGESCISLEEAPPAKQQIVCSRSFGERITDKDAMHQAVVQYAERAAEKLRGERQYCRQVTTFVRTSPFAVKEPCYSNAAVEKLPLPTQDSRDIIAAACRALNHVWREGYRYMKAGVMLADFTPSGIAQPGLFDEIQPRKNSEKLMKTLDELNQSGKGKVWFAGRGTAPEWQMKREMLSPAYTTRWTDLPVAQL
complement(52394..52831)           PHAGE_Cronob_ENT39118_NC_019934: protein umuD; O3K_25832; phage(gi431811072)         1.60e-26            EscherichiacoliO104H4str2011C3493MSTVYHRPADPSGDDSYVRPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPRPALEPVSDSPEFRTLYPENICIFGVVTHVIHRTRELR
complement(52828..53076)           PHAGE_Sodali_phiSG1_NC_007902: ImpC protein; O3K_25837; phage(gi89886014)            1.49e-20            EscherichiacoliO104H4str2011C3493MIRIEILFDRQSTKNLKSGTLQALQNEIEQRLKPHYPEIWLRIDQGSAPSVSVTGARNDKDKERILSLLEEIWQDDSWLPAA
53471..54397                       hypothetical protein; O3K_25842                                                      N/A                 EscherichiacoliO104H4str2011C3493MPNWCSNRMYFSGEPAQIAEIKRLASGAVTPFYRRATNEGIQLFLAGSAGLLQTTEDVQFEPCPGLTAAGRGVVSPENIAFTRWLTHLQNGVLLDEQNCLMLHELWLQSGTGQRRWEGLPDDVRDTITALFTAKRGDWCGFWSNEDVSVWWNRLCDNVLPEKTMPFDLLTVLPTRLDIEVNGFNGGVLNGVPSAYHWYTERYGVKWPCGYDLNISSQGENFIQVDFDTPWCQPESDVVAELSRLFGCTLEHWYAEQGCDFCGWQLYERGELVDVLWGELEWSSPTDDDELPEVTGPAWIVDNVAHYGG
54782..55465                       PHAGE_Staphy_Stau2_NC_030933: aerobic ribonucleotide reductase B subunit; O3K_25847; phage(gi100063)     7.48e-28            EscherichiacoliO104H4str2011C3493MSRFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWHRIDRFMAAWKRAGFSVAGHLVFTKNYTSKSAYVAYRHECAYILAKGSPARPRNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAANDDWFMPEAA
55466..55687                       PHAGE_Entero_N15_NC_001901: gp50; O3K_25852; phage(gi9630517)                        6.70e-07            EscherichiacoliO104H4str2011C3493MNYAGHEKLRAEVAEVANAMCDLRTTMNEMEQRYSFNADTLPERLVRQTLFRANRLLMEAYTEILELDACFKD
55701..56135                       hypothetical protein; O3K_25857                                                      N/A                 EscherichiacoliO104H4str2011C3493MYGTCETLCRALAAKYPGDMPLMLVIWSPEEIQALADGMDISLSDHEIRTVLARLEDIPEDQRTESGISSGVAMEIINNVSENRQVTVPAELLASLIQTAEQALWKREWAARDHGLAVPECVTRRQAVINQARTLLKNNRHEND
56181..56957                       YchA; O3K_25862                                                                      N/A                 EscherichiacoliO104H4str2011C3493MNENTTLNALICRHARNLLLAQGWPEETDVDQRNPKYPGWISIYVLLDAPRLAMLLINRHGGVLPPLLASAIQKLTGTGAELVLSGSQWQSLPVLPADGTQVFFPYAGEWLTEDEIRAVLDAVRDAVRSVSCRVAEDAQRIRAALTTTGQTLLTRQTRRFRLVVKESDHPCWLDEDDENLPVVLDAILNRGARFSAVEMYLVSDCIEHILSSGLACDVLRIPDEPPRRWFDRGVLREVVREGRAEIRSMADALAKIRG
57371..57796                       PHAGE_Pseudo_YuA_NC_010116: hypothetical protein; O3K_25867; phage(gi162135127)      8.90e-17            EscherichiacoliO104H4str2011C3493MQYAKPVTLNVEECDRLSFLPYLFGNDFLYAEAYVYALAQKMMPEYQGGFWHFIRLPDGGGYMMPDGDRFHMVNGANWFDRTVSADAAGIILTSLVINRQLWLYHDSGDAGLTQLYRMRDAQLWRHIEFHPECNAIYAALD

#### region 2 ####
63259..63855                       PHAGE_Entero_N15_NC_001901: gp43; O3K_25907; phage(gi9630509)                        6.47e-18            EscherichiacoliO104H4str2011C3493MMKSDEKYQVPAWMRPLLPLLCNTGGNDPEELLNDTETTASANVVRYVLIVAVRSQVDLLQLLYRKGLLRTEIPGGFSPEEAQALLDNLVRSHISKALSGERMAARDRNADLAWIGQQLVDAAWFVRATLEAHGMSVGNESPPAPPETMPDIQTRELVMLIKRLASSLKAVKPDSCVVREAQDWLRDRKLVDITDILR
64317..64817                       PHAGE_Rhodoc_CosmicSans_NC_028677: ArdA; O3K_25912; phage(gi966199624)               9.80e-11            EscherichiacoliO104H4str2011C3493MSVVAPAVYVGTWHKYNCGSIAGRWFDLTTFDDERDFFAACRALHQDEADPELMFQDYEGFPGNMASECHINWAWVEGFRLARDEGCEEAYRLWVEDTGETDFDTFRDAWWGEADSEEAFAVEFASDTGLLADVPETVALYFDYEAYARDLFLDSFTFIDGHVFRR
65546..65980                       PHAGE_Yersin_fHe_Yen9_04_NC_042116: hypothetical protein; O3K_25917; phage(gi100356)     2.96e-16            EscherichiacoliO104H4str2011C3493MTVSSTISVFCRDGVFRTVYCHLHGEPTWNGRILHTHYATGQQAEALVEHGDIRCLGPRCDKPAGHTLQNPVDGVTAYYGRDSGFRMDSEAREYRSFMEAIATESTEEVRFHYVFIDGYWKVMYRTPEGWKMKALALALRRCPK
66074..66340                       hypothetical protein; O3K_25922                                                      N/A                 EscherichiacoliO104H4str2011C3493MKPSIIFATAEYVKRLREECLRENKPLHRHTRFRRQELAQDEINPDVLAMSGHIARRCSEQKRVRIPAMKVSEWGHLLRALEIERVCH
66517..66906                       hypothetical protein; O3K_25927                                                      N/A                 EscherichiacoliO104H4str2011C3493MKSCFDTDKAFHMSFDEVTFNADRIRSKLELLSEELMPRCGLVYELYQRRLSAAIDNFVATLPTEQHLLVLELAREEFDYLSAEEIAEEIRRDSERGYCCHGFERNCCPLGCGDFGDDCCDAADLMEEP
66903..67817                       PROPHAGE_Escher_MG1655: predicted transposase; O3K_25932; phage(gi16131287)          1.69e-99            EscherichiacoliO104H4str2011C3493MSKKKNTTTPTPHDAAFRSFLANPDVARDFLELHLPAEYRQLCDLSTLKLEPATFVEPDLHQYASDILWSVKTTGSKDGYVYTLIEHQSTENLYMPFRMLRYSVAAMQRHLEQHKTLPLVIPVLFYHGERSPYPYSMNWLDCFENPALAAKIYTKPFPLVDITVVDDNEIMNHRRMAALTLLMKHIRHRDMMELLDKLPQVMVEISDEQVRVLIHYIVNAGDSVSPEFMRALAERLPQHEDKLMTIAERLEQKGRQEGRMEGRMEGALEKALAIACQLQKMGMTPEQIKQATGLSDDELKKIIH
67879..68085                       hypothetical protein; O3K_25937                                                      N/A                 EscherichiacoliO104H4str2011C3493MTIAERLIQKGFDEGFDEGFKEGFKKGALEVAREAACRLRDMGWTPERIQEAAGLSGEELKKLFPDEQ
complement(68116..68367)           PHAGE_Erwini_PEp14_NC_016767: hypothetical protein; O3K_25942; phage(gi374531851)     1.49e-06            EscherichiacoliO104H4str2011C3493MTGWELRIWRKSMLWSREKAAREFGVTQRTWHAWENAEQVDVTVWRTTQALSVRDLLPHMQGMRKADIIRRLENELGETAEDV
68947..69795                       PHAGE_Pseudo_phiPSA1_NC_024365: DNA restriction methylase; O3K_25947; phage(gi658307732)     3.99e-17            EscherichiacoliO104H4str2011C3493MNQTLPTADLNTAGTTDVIPSVAIDRIIAQRNEGIALFMQAMECLATARRILLDASGDIFLYGFEDCVTDSVRRMDKPEEAKRNITRLADRKIWDRLMTDTGMYTFMSSCQRDEWNSQLMSDTCPEITLDNVLATFRHLNASKMQTFEQGLIDVYRKLSWDYRTNNPCRLGKKIIIENLLYRWSNGRVTLDCSGREALDDLVRPFYLLEGRNVPDFRNSIGAQYGEFLGNGDNVGKLLEGEYFTVRGYQKGTVHIVFKRSDLVEKLNDIIARHYPGALPPRV
