gi|433644871|ref|NC_019966.1|  Mycobacterium smegmatis JS623, complete genome. 6464916, gc%: 65.07%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1264599..1264610                   attL                                                                                 N/A                 GGCATGCCGCGA
complement(1271523..1272212)       PHAGE_Mycoba_Myrna_NC_011273: gp70; Mycsm_01262; phage(gi203454672)                  8.66e-16            MycobacteriumsmegmatisJS623MEGIDASDLYVCSSANPDAGAVYVASGRYSSRDQLQYYLQNYSAFRDNAYATAPATNGGIWAFIAFVDGIGKGSPTVALEPLRRFGFEIHGAAAPSPQQGSRSTTSSAVAQPSPTAPLLPSMTQTPIPTATVGTVTAFTRIDWAGTRCIELRSARSNNPTQWGSGTVCSDNGSWEYSEHPVSGNLVGGDPVMGDATWISCKLYLNGKLNFSARANAGDGTDVNCLRKLN
1272331..1273179                   hypothetical protein; Mycsm_01263                                                    N/A                 MycobacteriumsmegmatisJS623MIAARTATGTATTATRPATGSPCQYSIGFWTGFRPGGRPSLAQALRAAFDTGRGDVAGPGAAGGEDDCAVRGTVAVGPAGLERAVSDETALVACTGLPLVVFRTGDLATGVRGDRDGVAGGFWVCGRRASGFAADVIGGRPTTATTSSRRYAYRSAASANRRKTSMPSSSSNKASMTPICPSRSSPAAITFAQPPSLNAKVVVATARRGGGFALERDGVFVAALWRGGAFFANGCDAASWSPLTSTKTAAGIASTTRKPRTTSVTISALLIFAAKSRLIRSW
1273266..1273478                   PHAGE_Thermo_THSA_485A_NC_018264: transcriptional regulator, XRE family; Mycsm_01264; phage(gi397912657)     5.87e-07            MycobacteriumsmegmatisJS623MEGQLQRIVGRNLRRHRVEQGYSQEAFADQMGVHRTYFSSVEGGERNLTLQTLEKIADFLGVDPRTLLDE
complement(1273506..1273742)       PHAGE_Mycoba_Sebata_NC_041993: baseplate wedge subunit; Mycsm_01265; phage(gi100108)     9.42e-09            MycobacteriumsmegmatisJS623MPSSEQDRRLRAQLAAELGYIPATLGPDEIERHRQLNAAADCTLSQERILRKYAHLREEKLRTEIEVAGRSEVTDLYK
complement(1273743..1273940)       hypothetical protein; Mycsm_01266                                                    N/A                 MycobacteriumsmegmatisJS623MVDQYRISDTGEVLSRGELCQRLNAELDSMDPETRAVNCKGTVDELIVDSALVGVYEPVDDEDSE
1274340..1275320                   PHAGE_Microc_MaMV_DC_NC_029002: hypothetical protein; Mycsm_01267; phage(gi971764756)     1.23e-05            MycobacteriumsmegmatisJS623MAITAAAVGAAFFIAVWQLPLLWSPPLDDNQLKQRTLTDKEWIDVHTARLQVQSANRTAVIQFGGGFVLFSGAVLAWTQFANSRRAARADFHLDLFDKSLTNLGAESSSLRTGGIYALGQLTELSKEHRRVVVEVLINFIRENSSLTDPKPPRPRLGTELLADSGQNLRQWRPDVQAAFDVLGRHTYLWHGIDALRFRGLDLRKVTLLGHRQGYIVSDSDLSGAWLKDADFNGSSFARATFTNADLSGARLDHCNLRGTDFTGARFFRANDDGEVEDLVTIAGAVFDSTTKWPDGWDAAQVTSQGAREVRKDERPTSVRPVGVPKV
complement(1275501..1276241)       PHAGE_Rhodoc_E3_NC_021347: hypothetical protein; Mycsm_01268; phage(gi509142346)     3.73e-44            MycobacteriumsmegmatisJS623MFLSEAAAHSMKETAKSMELIPHNSFHLEPRCRVCRNDRVRQKVNDLLATGASYALIVRTLDDDNAPLDTCDRVTIDSVRNHCARHFPVQNVAQSTYREILERRARENEVDFIEGVAIAITPMAFFETVMARSYEALVDSHTTVDVSTGIIAASRLQSILDARAGQPDLLEIRVQLNRIIEAVRSTVPEPMWADISRKLDASTHAEHAAEVDDFYDQNDDDEYSIHAPDVAEFDDDLDDSDFSWLR
complement(1276471..1276755)       PHAGE_Mycoba_Alice_NC_028986: gp69; Mycsm_01269; phage(gi971763302)                  8.01e-20            MycobacteriumsmegmatisJS623MLSDNNENKVWVHLYGGEQDGFRRRIDFDGYPPKRFLIWHIDESPFVETAADEQRELLVEKLATLAYEYVDDVEVLGERELRYRRAELADKTAS
complement(1276807..1277160)       PHAGE_Mycoba_Bipper_NC_031253: hypothetical protein; Mycsm_01270; phage(gi100098)     8.65e-06            MycobacteriumsmegmatisJS623MTKTNRGSTSGRRHTSELSDQQLLASAWAQLHNKPKTDSSGCFRARYPGTCPRCEKRIAVGQEIHWVVQFGGYVHRGCKTKAPVLEGGKPHIVTVRRVSMATNVCRDCNTEHAGECW
complement(1277153..1277410)       hypothetical protein; Mycsm_01271                                                    N/A                 MycobacteriumsmegmatisJS623MTRRKYRSLAERLGQTAITSQAVLDAQRVRCDAFIDVMVDVARISSLWPRPESTELALSDPQTDQKSAGQQSPVPGNSDRKWRYD
complement(1277746..1278555)       hypothetical protein; Mycsm_01272                                                    N/A                 MycobacteriumsmegmatisJS623MVSNKTQHEKPDSEAIRMVLDQALGQVKATTFTVLYTIGQLVQKTPGSPITMAKISMVCGVGERTTKAAVKELHKALILDIIETPKGNVFEFISPATDPDRSRHLQVHDDHEIPAISRIERGANFSGTTSESYRSTEQDRSITRSLEQVPGVTKSAPETRSQRPGRLNIFSPEIQDLVDHFESLVLPHAKQRITARRRAKWYSSVIYLVFTRKRPLAEIHSVFDWLFTDWHGYLPIWMPREEERKITRVAQISRNYDSILEIMSRKEPA
complement(1278652..1278951)       hypothetical protein; Mycsm_01273                                                    N/A                 MycobacteriumsmegmatisJS623MTPETIEAIRKRATELADAAPPFTTEQAALLVSLFRRYSTPATEASVGAQVGDKVPPRDMRASAPTTSQARACTRGTRDIGPINTIEEAKSAVAALISA
complement(1278948..1279151)       hypothetical protein; Mycsm_01274                                                    N/A                 MycobacteriumsmegmatisJS623MRTLSSRHASVAALKRHRAADDPELLSASVQLREEVLVRAVEKALEKSPPLTEAVRQRIVGLLAVAQ
1279125..1279136                   attR                                                                                 N/A                 GGCATGCCGCGA
complement(1279406..1280854)       PHAGE_Gordon_Utz_NC_030921: replication and recombination DNA helicase; Mycsm_01275; phage(gi100033)     3.74e-138           MycobacteriumsmegmatisJS623MRAIVYCRVSSDQTGEFRSVESQEEECRAVCARKGWDVAEVLVDNDRGASRFSTKDRPEWRKLSNILEEGDVLVMWEASRAQRDVARYVELRDLLAERGALWSYSGKLYDVSRGDDRFNTGLDALLAEREAEQIRERVLRGKRAAALKGLPGGRPAWGYKCERDHTGRTTGWVIDEEAEPLVREVFERVLAGESLWAITRDFTARGIQPPQLQKNARKDWKPQSLRVTISSPTYAGWRQHRGQLLLDNEGNRVRGRWRPYITDAQHERLLAIFSAPARKTTTHRGREPRHLLTGIAKCGICGAVMRYSDAPSSRARAARYLCEKRTCVGRRADAVDLLVEETILERMERPDAIKLFAQAGNDALTQALELADTLRKRLAGFVDQAADGKISPASLATIEAKLRPQIDAAEANARATVTSPLVARLAGPDARQTWARDFTIIDRRTVVASLLDIKIKKVHHGNTQRFDPRDIDVIWKTAQVSA

#### region 2 ####
4206686..4206697                   attL                                                                                 N/A                 ATCGGGGCGTCG
complement(4220210..4221883)       PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; Mycsm_04290; phage(gi371496158)      2.76e-14            MycobacteriumsmegmatisJS623MAEFIYSMRKVRKAHGDKVILDDVSLNFLPGAKIGVVGPNGAGKSSVLRIMAGLDTPNNGDALLQPGASVGILQQEPQLDETKTVRENVEDGVAIKAKLNRYNEVAELMATDYTDELMEEMGHLQEELDAADAWDIDSQLEQAMDALRCPPPDEPVTHLSGGEKRRVALCKLLLSKPDLLLLDEPTNHLDAESVLWLEQHLAQYKGAILAVTHDRYFLDNVAEWILELDRGRAYPYEGNYSTYLEKKAERVAVQGRKDAKLQKRLQEELAWVRSGAKARQAKSKARLGRYEEMVAEAEKTRKLDFEEIQIPVGPRLGNVVVEVEHLDKGFEGRQLIKDLSFTLPRNGIVGVIGPNGVGKTTLFKTIVGLEQPDSGIVRVGETVKLSYVDQSRAGIDPKKTVWEVVSDKLDYIEVGQNEIPSRAYVSAFGFKGPDQQKPAGVLSGGERNRLNLALTLKEGGNLILLDEPTNDLDVETLSSLENALEKFPGCAVVISHDRWFLDRTCTHILAWEGDDDNEAKWFWFEGNFAAYEENKVERLGIDAARPHRVIHRRLTRD
complement(4221950..4222396)       PHAGE_Propio_B3_NC_041892: hypothetical protein; Mycsm_04291; phage(gi100050)        3.35e-18            MycobacteriumsmegmatisJS623MGNIVNDPHGRRVGDQEVMKFRVASNSRRRTADGKWEPGNSLFVTVNCWGKLVTGVGAALRKGDPVIVVGHVYTSEYEDRDGNRRSTLEMRATSVGPDLSRSIVRIIEKTASARDAGPTADEPLVEPESDETADAAEVDDGRALPLSA
complement(4222471..4223343)       hypothetical protein; Mycsm_04292                                                    N/A                 MycobacteriumsmegmatisJS623MPTEGEEALIDPVTAAAGKAIQSATEGLSKAAGELLVRVFGRAADQIGLYLEQKAYYRFNNAQRIAEKAQRKAEKLGREDGIVAPRLAYTMLEDGTYSDDELMAEYLGGVLAAGRTPAGKDDRGVTWTKVITTMSALQIRAHFILYREWAIALHGSGFSLNMDDGRNRAVMYVDLSDFVSLLLETDPDVDAESALTHVLSNLHRLNLIEGAYRYGSPGPGGGDRPVFEARPSLAGMELYGWACGLSGVTPSQFITAPELVQVEEIEVARPRAVLPGIPATADTPAQQPSE
complement(4223419..4223760)       hypothetical protein; Mycsm_04293                                                    N/A                 MycobacteriumsmegmatisJS623MSPAEHDREHALVFAEYRQTVEQLRHRPTEELRERLVAQCDMLNYSDQVRASLGGWPRFYRVTGGKVHTDLRCRGLSGRNDRAVVEMLPSLSGLAMVDVTICGHCKARRGVSS
complement(4224117..4224470)       PHAGE_Mycoba_Bongo_NC_041970: hypothetical protein; Mycsm_04294; phage(gi100020)     6.11e-20            MycobacteriumsmegmatisJS623MIGTVFRAPARNANGDPVDADGNVIRITDNGANLGTLSGLIFGTPQSDQPVSTRGNVVDTQGLVGAPIDAAITLQHGDVLAVDGVRYAITGPRLWGDVGYFGMQPTHYWVTATSFVN
complement(4224467..4224784)       PHAGE_Mycoba_Gardann_NC_031124: hypothetical protein; Mycsm_04295; phage(gi100009)     2.98e-07            MycobacteriumsmegmatisJS623MAAPTSADLATLLGRTVTSEQGGAVISVVSAMAKSYTRGVGWTDTGPNDEIRAVILTASARLLSNPRGLLMDETKGPESVSYRSSFTGWTLAELFVLNRYRVTAL
complement(4224787..4225638)       putative phage phi-C31 gp36 major capsid-like protein; Mycsm_04296                   N/A                 MycobacteriumsmegmatisJS623MTIATPSGNPALIASQVASFLVGPLQERSTFLSAGPVIVDTATPLRIPVAASTSPAAAFTAPGATIADSAVATSEIDVMPSSLQALKVLVKVSNELVRMSALSLESVIQQRVVEDTALVLDGSLWQGSGASNTIKGILQVSGIAGGATLDLTDPDTIIDGLTVARQNFVQPTHLAMQAATFSALRKLRVSTTDHRYIFNADNAFVAAGENLFGLPVIITSHVPANAVAIVDFSRVIVARDVDASVTILDQTFGAEDSIGIRAVTRYDVCLTNPHAVTLLTVAG
complement(4225749..4226183)       hypothetical protein; Mycsm_04297                                                    N/A                 MycobacteriumsmegmatisJS623MEGAEVTATDAEVTTEATETTEEQTEDTTEADENADQFPRDYVERIRRESAGYRDKAKAAETRAEDLARQLFTARVSATGKLADATDLEWSADLDDADKVNAAVDELLTAKPHLASRTPRGNVGQGAKDSGATFSMLSHLKSLV
complement(4226247..4227659)       PHAGE_Strept_phiSASD1_NC_014229: gp23; Mycsm_04298; phage(gi298103488)               6.38e-34            MycobacteriumsmegmatisJS623MSSPLLIEMLQRIDAGVHRRTENTAYWRGKQPLAFLSPESRAALGNRMGVLAVNFPRVQITSLTERLRVAGFSGSVDPWPDFISNDLDQLADVIHKEALLQGQSFCLVWSDEQGNPRATVESAENVAVKRDPVTREVVVGCKRIRVKTTPTTVGYTEAWIYLPDEVQHWRSNSPGGSGEFELLEVVPNPLGLVPVVPFVNADLLPLMNMDPVYLEESGASEIDPLKCLVDGLNKTLADLAVAQEFTARPRRWATGIEATEQPVLDADGNPVLVDGEPIMEAVSPIPEGNRAMLASNDAAKFGQLDGANLAGFRTAVDVWIQAVMAVSALPAHMCGITTANPSTADAIRAAEAGLTSRAESKQLMFGRSWEAVARLLAAIRAGVNPSTVAVKVAWSPADTRSQAAEADAAQKLYSSGILSRTAILRRLGLTDGEIAEELDNVQRDASIGADISIGRYVRDAVKPSPNPAHQ
complement(4227656..4229164)       PHAGE_Strept_phiBT1_NC_004664: gp33; Mycsm_04299; phage(gi29366753)                  3.18e-52            MycobacteriumsmegmatisJS623MPPPMRRGPRPPVDESPLPWRRKRGESESEAFGRFCRKYLRLSGGKVFDPRPWQLDLVASVWDPVPRPRLAAWALARGNAKSTLAAAMACYVLLTGGDDVSVDVVAVDQNQAGIVFGIAAKFIARHSELETRVQVYRERLVIPARGAELVCLPGSAPALEGRSPDFCVVDEGGRVDQEVYEVVALASGKKPTSLILLIGTPGPRPDNVLAQFRQHALDNPDDPSQVYREISAAQWPDHPTDCDDHGDGPGSGCLSAANPGLDDFLFRDALMALQPPKMSESHFRRARLVQWVSSTDDSALPPGLWESLSTGEIVPPGSKVVLSFDGSYSGTDATVLTVATVSRTPHIDVVQAWQRPDYSQTDWRVPILEVEQAIRNACQHWQVAEICADTYRWQRSLAVLQAEGLPIVEFPQTVSRMSAATAEFLTACRNDQLTHSGHPIMAEHIGNAVLTEDNRGGRMVKASRSRHAGRIDAAITAVMAYSRASWLATHPKKKNRAWSFPS
4229408..4229710                   hypothetical protein; Mycsm_04300                                                    N/A                 MycobacteriumsmegmatisJS623MSPRAFVAILGVLLIVAGFAVYLYQPTVSDQGYSVQCEKHGAQGAPQVMDNRNVMQGVQTDLAGMCRDKGEVLTFLQAGLFGVGVITVMGCAAIRTKKDA
complement(4230036..4230251)       hypothetical protein; Mycsm_04301                                                    N/A                 MycobacteriumsmegmatisJS623MSDHVDVKIPGVSSLTGCLVQALETDNEERGYLIRLGKPDGTSANFLASVAELENLRQQIEKATLTGMFGG
complement(4230468..4230818)       putative transcriptional regulator; Mycsm_04302                                      N/A                 MycobacteriumsmegmatisJS623MPTSERRSPKALNQFGRQQNAQRRNDKGCTLPPQPCLCTRTTYSEQNMTHTDENLTIEQAAAYLGVSTSWLYELRHQRRGPTSWRDGHRLVYPRSELDLFRARRRERTLRGEGVSA
4231165..4231176                   attR                                                                                 N/A                 ATCGGGGCGTCG
complement(4231328..4232683)       PHAGE_Mycoba_OkiRoe_NC_024366: integrase; Mycsm_04303; phage(gi658310932)            7.27e-84            MycobacteriumsmegmatisJS623MLTCMNAPLNAVIYTRVSDDRNEGRSVEDQERECRAECERQKWPVRKVFSDNNLSASRYGKARPEWERLKKNLRTGDVLVMWEASRASRDLEEFVRLRNQCAELSVPLSYSGRVMDLTLGDDRFVGGLDALIAERESEQIRVRTLRGKRAGAKAGRPAGRVPWGYRVASPGVWEPDPAEAPRIRECVERILAGESHNAVYKWLQTTEGYVPPSLTVMCRSLRKPSLAGIRVHQGEVVGKGNWTPIITEQQHTRLVARMERVRKAHNGRNANPGPEPKHLLSLIARCGKCGEPMAWRRNRHGVPIYGCSKGDSSRLAEPLDKAVEKALFDLLAGINPKEFEDDDPAIAALWAEVERLETELEEWTEKAIAGDVTPTSFGKIEKGLLQRIEDLKEKAIRDDREQIDLADLLANWEDTPMREKRSIIRAFFSITVKPLRQGTKATPDDVDIVPL
