gi|00000000|ref||  Gardnerella vaginalis AMD, whole genome shotgun sequencing [asmbl_id: NC_000000].1606758, gc%: 42.08%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
109917..109928                     attL                                                                                 N/A                 ATTCTATTTTTC
complement(112612..114246)         PHAGE_Lactob_phiPYB5_NC_027982: putative integrase; GVAMD_0693; phage(gi937456185)     8.60e-27            MMILIGKQHTRTVKSRRCKMSANVIIIPPRKIAGNTVDKHEDKPKLRVVAYCRVSTDSEEQATSYDTQVQHYTDYISRNPLWEFAGIYADDGISGTSTKKRVGFNDMIHDCMSGKVDMVITKSISRFARNTIDCLKFVRQLKDKNIPIIFEKENINTMEASGELLLTIMASLAQQESASLSQNVKLGLKFRYQEGKVQINHNWFLGYTKDDEGNLVILEKEAKVVRRIYREYLEGASLRDIAEGLEKDGIKNGAGHLKWNLSNIKGILQNEKYIGDALLQKTITTDFINHVRIKNDGTEPQYYVKDSHTPIIPRDIFFKVQEEMLRRANMFSGEENKKRRVYSSKYALSSLCVCAKCGDVYRRIAWNNRGVHSVVWRCCTRWENGPSACDASTVKEEELQSAIVKAINKVFSISDEVLDTLNNSIREIIAGNNLSEIETVDKKIADKQAILLTLLKAKKDYTKTANEIDELKGKKQQLLIEKAGQEDAKRRIREMEDFLKSERHDISEYDEKLVRKYIKKIKVYEDRFSVTFKSEISVNIERAS
complement(114571..116166)         PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; GVAMD_0694; phage(gi77020163)     3.19e-41            MKEIIKIDSTMRKTGFEKKTRVAAYARVSSDSDEQLLSLEVQKEHYENYIKSNPCWEYAGLYFDEGISGTKIGKRESLKQLLKDCQSGQIDRIITKSISRLARNTVDCLEIVRKLTGLGIYLYFEKENIDTEHMSSELMLSILSSIAQSESRSISENSMWAIQKRFENGSFIISCPAYGYKNENKKMIIVPEQARVVKEIFNMALSGMGGEAIARVLTDKKIPAKRGAKWSSTTVNAILNNKTYTGDVIFQKTFTDDNFNRHKNCGEKKQYVIENHHEAIISHETFNLVKEIIAWRRNENNIVCGSGKYNKLYAFSGKIRCGECGSKCKRRIIYQHNKAYGIWVCITHLEDIHACSQKSVMESYLKISFLQMLNKLKATSAQILTPFIKSLRNVNSKDGLNKVIELEEKIAKLQEQEQVLSKLFAGGYIEMDSYYLESNQLKAEIDTCLKEKLQLSNSLNGNLTHLNEAQKLQRFVSVTEVFSEFKDEDFLDFVDDVVVKSRTRFLFILKCGLELEEEVKETWHASHMVTE
complement(116228..116440)         hypothetical protein; GVAMD_0695                                                     N/A                 MQISNDAHGLKDVKARAWTKESMQADFRFEIAEKLTASLFKKGLISEQEKEKISRLNREKFHPFYKELLG
complement(116567..116698)         hypothetical protein; GVAMD_0696                                                     N/A                 MLAIAFNYVIYALSLLNRMLVVKLNVSALTRVETRGGVSIHSW
complement(116981..117901)         PHAGE_Clostr_phiSM101_NC_008265: autolytic lysozyme; GVAMD_0697; phage(gi110804057)     5.52e-19            MSKKGIDVSEWQGDIDFNAVKASGVEFVIIRAGYGIGCKDKWFEQNYRKAKTAGLDVGAYWYSYANSASEAAEEAQSCANMLSGKSFEYPVYFDLEEKSQLNRGRAFCDSLITSFCSKLETYGYYAGFYTSLSTANNLVSSHVRNRYALWIAQWNTHCSYQGSYGLWQYSSSGSVPGVAGRVDMDYAYKDYPSIIKNAGLNGCKNGGSDQAARTSSIDEVAREVINGAWGNGNERKQRLTQAGYDYTSVQNKVNKLLGVKACRKSVDELAREVIRGTWGNGNERKNRLTQAGYDYDTVQKRVNELL
complement(117894..118205)         PHAGE_Bacill_1_NC_009737: putative lysis protein; GVAMD_0698; phage(gi155042950)     6.50e-24            MVADYITGVMCAVTDKKLSSSIGFKGIFRKVLIFMLVGIANIIDFHVLKQGSVIRTAVIFFYLSNEGLSLTENAAHLGLPVPEKLKNVLEQLHDKNRKDNTHE
complement(118470..118790)         hypothetical protein; GVAMD_0699                                                     N/A                 MKPTISYAVAVQKYKAELNEKIVELNKQIPIPTYMIEGIVASVLSDMRSAVIAENSMEYEAYVKQLEDYFNSRERELNDEILKIKAEKAEKTETAEKGEDAEECVK
complement(118774..118956)         hypothetical protein; GVAMD_0700                                                     N/A                 MEKLIIPTNKIVANKGTRLKDVTESITTPVVDNTKILCEISHKLDIILKRLEESSGETDN
complement(119063..121870)         PHAGE_Clostr_phi8074_B1_NC_019924: putative phage tail protein; GVAMD_0701; phage(gi431810378)     8.13e-19            MLDGNTIYYPNDDKAVLDDITLNLELNTAGTLTFTCPSQNPCYELIKNRKSIVSVWRDDEEIFFGEVREQVKDLYGSKKVTCVGLLTYLADSIQPQKEYHDQSSYQLLEKLLQAHNSQVDDYKKIRIGFVTVSDSNDSLYRFTNFETTLEAIMGKMVEKLGGYLRLRKEDGKLYLDYLHLEEIGKATSQHISFGLNLLEYAENLSAEDVTTAVIPLGKELENENGENEVLKKHVDITSINNGKNYIVSREAQKTFGWVCKVVNFNNVTVPTNLMRKAVKWLQDNQFEHVEISLSAVDLSELGLYYATIKCGDRVRCLAPQFGMDRVFPVVKKTIPIQKPGEVRIVLASRISKGYVQNVSHAVQTLKEEAVEARKIDNERVKAAIDNIKAQMGNSQSGYKISEYDSKGMWVRDLYMDTPDKNTATKVLQVNMNGIAGSHNGFSGPYSTAMTLDGMVYGDRIIGHSIDAEKLSVSYTSQVEKQISKAKNEAIKDTGRRLENYYTISEINTKLNVTDGKIEAGVESVNHSLKQKNGNYYGSYTPSQFNAPMSLWLNDSEKMQHVGDFFYDTSTGYAYRLIVKQESLAVKFNEKSHTESAFDDFVDIFYKYEDKIYAIPGLTGEKISGATVFVPSSEFWLHFRTNWSPFDNYGFKIDSIKKEYSGEISGYVSKPPEDINIIEVEGENYPESEHPYKGGTSKLWHYVSADSISSFRTFAWIRVKDKDIEAAKFTADKAISKLTIVEDSISSMVKKGDFGSFMQQNYNSFLLGFNHSSKYVQITPGQIELYDGEVDEDHKRAVFDKNGNNFYRNGVYIGYVGTGEWEEDNSHKGLVFHLTSDGKYMAFAQRKSADEETYATMLCFSRSQSIYKEYGIHAGCNFYMHGNKIIDPVWQDGAGVDADINYVQIIEMNQDGKASKWGSNAHMVFKNGILMKVKYY
complement(121883..122536)         PHAGE_Clostr_phiCT19406C_NC_029006: tail protein; GVAMD_0702; phage(gi971821558)     4.45e-05            MLINGLHSFNDLGLVATSRPLVQLPEPKLEYLQIPGRQESIDISESLAGEVLYEMREGCFEFIVANKNKWSETCHSVKTLIHGKSVKLSLDDELLFYYQGRVWVSGFKSDKNYSTLTLNYKLQPYKYSVDDSDGVHTIWGVQVDDKREITLVHDFDMTLIPEFNNLSSNSMLLDSNGKKYEIKTGVNRFPQLRSKINMSLTFVGNGMVNISYKRGWL
complement(122548..125115)         PHAGE_Geobac_E2_NC_009552: putative tail tape measure protein; GVAMD_0703; phage(gi148747742)     7.52e-48            MANRIKGITVEIGGDTTGLDKALKDVNTTIRSTQAQLRDVNRLLKLDPTSTQLLSQKQAFLQKEIQETSNKLNVLKQADKQAKVQLENGELGRDKYDALQREIVETENNLDSLKEKLKQVGSVSLTKLSSQFDSTSKKIKKLGDGMSSLGQSLSTKVTLPIAAIGTAGFTAAADLQDAMGATEQIYGKSANKMLKWSGSLKSYYGIAQGQALEYANTMGAMLKNIGGKSDAEAAEMSQKLVALAGDLSAMFGGTTESAVLALTGALKGNNAMLDNYGMGVNEATIKAKALAMGLHDGRGAMSLQAKQAATLALIMEQTADAQGQAGREAAGASGSMKILKTELQNIAATIGNVLLPVITPLMQKISAWLSKFKQLSPESQKLIVTLGLIAAAVGPFLVVLGTCISKIGVAIQGFSKLALFIGKMFASFTSGSSILEGLGAVLGGVSAPILAVVAVIGVLVAAFVTLWNTNEEFRNSVIAVWEKIKETFTGFVNGVKEKLSSLGIDFTSIVEGLKTVWNGLCAILAPLFEGALNLSFTSFKAVLDLITGVLDVFIGLFTGNWSQLWDGVKEIFTAVWNAVKNTFITVFNTLKNVFNVFLSFFGTSWNKLWLSVKNFFMNVWNGIVSFFTNVLNGIKNTATSVWNGIKTAIMSVVNGIKTSISTVFNSVANMVKSVFNGIKNTVVSVWNGIKNAIITPIEAAKNKVKAVIDAITGFFSGIKLSLPHIKLPHFSIKGQFSLTPPSVPYLAIDWYKKAMNKPMLLNGATIFGEKNGRMLGGGEKGPEVIMGLNSLENMTTGANTQMLSVMNQILAIMDAYFPQFSNQSIVLDTGELVGGIAHRMDSELFKLQTRKARGW
complement(125359..125724)         PHAGE_Bacill_1_NC_009737: hypothetical protein; GVAMD_0704; phage(gi155042944)       1.39e-16            MLEKTVKVNGKDVKFRSSATIPRLYRIKFKRDIFKDLSKLEQSFKINEGVFEISDLEIFENVAYIMAYHADNSIPASIDEWLDEFEMFSIYEILPEILELWGANLETEVKSKKNLKQQHGK
complement(125742..126314)         PHAGE_Bacill_1_NC_009737: hypothetical protein; GVAMD_0705; phage(gi155042943)       4.34e-46            MGNKVKYNLKNVYAAKLKKDSSGFSYDEPKPIPGAVSISLEAEGESSPFYADGIVYFRSTANNGYSGDLEIALIPEWFRTEILREELDKNGVLVENAKISETEKFALLFEFDGDVNAIRHVLYNCSATRPSIESETKEDTIEPGTETLSLTADPREDGLVKSRSGDTTSKETYEKWYKSVYVPQANAENK
complement(126298..126636)         PHAGE_Bacill_1_NC_009737: putative aminopeptidase; GVAMD_0706; phage(gi155042942)     1.86e-23            MGNLLSIMREIGFPFAYHHFAEGESPNPPFLLFLTPASSNFAADGKTYFKANEVHIELYVDYKNPVLEEQVEAVLDRHGIFYNKTETFIESEQLYETLYIFEMEVTENGKQG
complement(126629..127009)         PHAGE_Bacill_1_NC_009737: hypothetical protein; GVAMD_0707; phage(gi155042941)       1.88e-18            MSKVSIGSLSKEVIRELKTYAKVTTGKVKEAVKNAGKTAKEEINMTAPKRTGAYAKSWAVKTLNETGSRLVLVVHSRNKYQLTHLLEYGHAKRGGGRVEARAHIAEAESKAVRSFEKEIEEAVKNG
complement(127648..128832)         PHAGE_Salmon_ST64B_NC_004313: Major capsid protein precursor; GVAMD_0708; phage(gi23505451)     9.66e-35            MMNTISNMVEKRNKAWQGAKAFLESKRDKDGLISEEDAKTYDEMEAKVKAYSMEIDRLEQMEKMDKELSKPTSEAIVAKPMKTGVKFEKQGRARDEYKQAMLTALRSNFKKLDNILQEGIDADGGYLVPEEYDNRLIETLKEENIIRSLATTITTSGEHKINIAMSDPAAAWIEEGASLNFGDSKFAQILLDAHKLHVAVKVTEELLYDNAFNLENHILTSFGMALANAEEDAFLNGDGVGKPTGIFNKKDGGTFLKETTSIKTDDLIDLIHALRRPYRKNASFIMNDKTVASIRKLKDNNGAYVWQPSYQDDEPNRILGYPVYTSAYAPENMVAFGDYSYYNIGDRGSRSFKELTELFAGNGMIGFVAKERVDGKLVLKEAVQILPVKTSVAA
complement(128835..129569)         PHAGE_Geobac_E2_NC_009552: putative Clp peptidase; GVAMD_0709; phage(gi148747731)     1.73e-54            MRKFWQWKNQKVNSENNEILERTLFLNGTIAEESWFDDDITPQLFKDELNAGSGNITVWINSPGGDCVAAAQIYNMLMDYKGCVTVKIDGIAASAASVIAMAGTKVYMSPVSMLMIHNPMTVAFGNRDEMEKAISMLDEVKESIINAYEIKTGLNRVKLSHLMDSETWMDANKAVELGFADGVLTRGETADIGIPQVSTLYSKASVQNTLLEKICKACRISGKETNNISADDLMDRLFLIKNWR
complement(129686..130453)         hypothetical protein; GVAMD_0710                                                     N/A                 MSKKKMYISLGTLLLLVLFVFTGIFIIGNNPASKNSGNIAHKLMPVNVAYAETLDDIKGSMNKLMVELETETKTNPQVAMQAHPGKFIRNSKNYQRILKLGLKAIKPLYDAIYDSRDAGCYEYILAMAIEDITGEKFVYNSDYGWKNSLEFRMAYDEKVNNTRFNVERISNNETLNDHDRTQKFKELGIFAVSDLIKEYRKSDSKVSKPSILEAVKGITSKYKELAITERTPTESILDETQLFDSLVSLNGRAYK
complement(130475..130756)         hypothetical protein; GVAMD_0711                                                     N/A                 MTYEWPSDFGDDGATKAQLDNYLAKKGYRPYKYDPFILAYGHSPDKIVHFAKVTGLKWCRAKWGQLELFNHGSHDPYYPNSVYGSLQHKYTAN
131160..131171                     attR                                                                                 N/A                 ATTCTATTTTTC
complement(131297..132544)         PHAGE_Burkho_phiE125_NC_003309: putative portal protein; GVAMD_0712; phage(gi17975165)     9.82e-87            MSIFSKIFKSRDKPENRFNLNAQRFISGMSSSGKRVNERSAMQMTAVYSCVRILSEAVASLPLHVYEHTSTGTAKAVKHPLYKVLHDEPNLEMTSFVFRETLMTHLLLWGNAYAQIIRNGKGEILGLYPLMPDRMRVDRDESGQIFYEYTLNDSDVLAGKETSVKLKPFDVLHIPGLGFDGLVGYSPIAMAKNAIGMAIATEEYGASFFANGATPSGILEYPGTVKDPQSMRDSWNKGFSGSNSHKIAILEEGMKYTPISISPNEAQFLETRKFQINEIARIFRVPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPWVARFEQSITRRLFTDKEKETYYVKFNVDGLLRGDYQSRMNGYATARQNGWMSANDIRQLENLDKIPACEGGDLYLINGNMLPLNRAGAFTVIGRNKLGD
complement(132556..134148)         PHAGE_Gordon_Zirinka_NC_031097: hypothetical protein; GVAMD_0713; phage(gi100002)     4.37e-94            MEKYEVTKFKKEDSTYSKDLADYAVSFIECLTHTKGTWAGKPFKLLAWQEQIIRDLFGVVKPNGYRQFNTAYIEIPKKMGKSELAAAVALLLCCGDNEERAEVYGCAADRQQATIVFDVAADMVRMCPALNRRVKILASQKRIIFLPTNSFYQVLSAEAYSKHGFNIHGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTHSICYETHQKAVDILEGRKIDPTFYPVIYGAKDSDDWTDPKVWKKANPSLGVTVQMEKVKAAFESARQNPGEENAFRQLRLNQWVKQSIRWMPMEKWDACGFQVNEEELEGRVCYGGLDLSSTTDLTAFSLVFPPLDESDKFRILPYFWVPEETLSLRVKRDHVPYDVWEKQGFIKTTEGNVVHYGFIEKFIETLGERFNIREIAFDRWGAVQMVQNLENMGFTVVPFGQGFKDMSPPTKELMKLTLEQKIAHAGHPVLRWNMDNIFIRTDPAGNIKCDKEKSTEKIDGAIATIMALDRAIRCGNANTQSVYDARGILFM
