gi|00000000|ref|NZ_ADAM01000002.1|  Gardnerella vaginalis AMD n.contig001, whole genome shotgun 567290, gc%: 42.63%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
23059..23070                       attL                                                                                 N/A                 ATTCTATTTTTC
complement(25754..27331)           PHAGE_Lactoc_28201_NC_031013: protector from prophage-induced early lysis; GVAMD_RS05345; phage(gi100001)     7.02e-36            GardnerellavaginalisAMDMSANVIIIPPRKIAGNTVDKHEDKPKLRVVAYCRVSTDSEEQATSYDTQVQHYTDYISRNPLWEFAGIYADDGISGTSTKKRVGFNDMIHDCMSGKVDMVITKSISRFARNTIDCLKFVRQLKDKNIPIIFEKENINTMEASGELLLTIMASLAQQESASLSQNVKLGLKFRYQEGKVQINHNWFLGYTKDDEGNLVILEKEAKVVRRIYREYLEGASLRDIAEGLEKDGIKNGAGHLKWNLSNIKGILQNEKYIGDALLQKTITTDFINHVRIKNDGTEPQYYVKDSHTPIIPRDIFFKVQEEMLRRANMFSGEENKKRRVYSSKYALSSLCVCAKCGDVYRRIAWNNRGVHSVVWRCCTRWENGPSACDASTVKEEELQSAIVKAINKVFSISDEVLDTLNNSIREIIAGNNLSEIETVDKKIADKQAILLTLLKAKKDYTKTANEIDELKGKKQQLLIEKAGQEDAKRRIREMEDFLKSERHDISEYDEKLVRKYIKKIKVYEDRFSVTFKSEISVNIERAS
complement(27333..27743)           PHAGE_Deep_s_D6E_NC_019544: recombinase; GVAMD_RS0105835; phage(gi423262352)         5.26e-05            GardnerellavaginalisAMDMARIPYGYRIVDGKAVIDEVKAQEVREFFRFYLEFKNISQAAKKSGIKRAWPVTGKILSKKLYLGTEFYPQIIDEDMFRQVQQIRHENAIRNHRYKEPKPIKEIRLITSYQLEKVEKKYDDPYRQAAYAYSQIKEV
complement(27713..29308)           PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; GVAMD_RS05340; phage(gi77020163)     3.71e-41            GardnerellavaginalisAMDMKEIIKIDSTMRKTGFEKKTRVAAYARVSSDSDEQLLSLEVQKEHYENYIKSNPCWEYAGLYFDEGISGTKIGKRESLKQLLKDCQSGQIDRIITKSISRLARNTVDCLEIVRKLTGLGIYLYFEKENIDTEHMSSELMLSILSSIAQSESRSISENSMWAIQKRFENGSFIISCPAYGYKNENKKMIIVPEQARVVKEIFNMALSGMGGEAIARVLTDKKIPAKRGAKWSSTTVNAILNNKTYTGDVIFQKTFTDDNFNRHKNCGEKKQYVIENHHEAIISHETFNLVKEIIAWRRNENNIVCGSGKYNKLYAFSGKIRCGECGSKCKRRIIYQHNKAYGIWVCITHLEDIHACSQKSVMESYLKISFLQMLNKLKATSAQILTPFIKSLRNVNSKDGLNKVIELEEKIAKLQEQEQVLSKLFAGGYIEMDSYYLESNQLKAEIDTCLKEKLQLSNSLNGNLTHLNEAQKLQRFVSVTEVFSEFKDEDFLDFVDDVVVKSRTRFLFILKCGLELEEEVKETWHASHMVTE
complement(29370..29582)           hypothetical protein; GVAMD_RS05335                                                  N/A                 GardnerellavaginalisAMDMQISNDAHGLKDVKARAWTKESMQADFRFEIAEKLTASLFKKGLISEQEKEKISRLNREKFHPFYKELLG
complement(29569..29976)           hypothetical protein; GVAMD_RS0105840                                                N/A                 GardnerellavaginalisAMDMNVEEKSKIGKLRNMGFGYTKIAKQLNLSVDTVKSYCKRNNLGGVNVGNSVQLCDLCAKPVKQNAGRKVKRFCSDACRNTWWSKHTQLVKRQANYECACLNCKNSFISYGNKTRKYCCHACYIEHRFGGEHHANK
complement(30123..31043)           PHAGE_Microb_Koji_NC_042118: DNA primase subunit; GVAMD_RS05330; phage(gi100025)     1.07e-23            GardnerellavaginalisAMDMSKKGIDVSEWQGDIDFNAVKASGVEFVIIRAGYGIGCKDKWFEQNYRKAKTAGLDVGAYWYSYANSASEAAEEAQSCANMLSGKSFEYPVYFDLEEKSQLNRGRAFCDSLITSFCSKLETYGYYAGFYTSLSTANNLVSSHVRNRYALWIAQWNTHCSYQGSYGLWQYSSSGSVPGVAGRVDMDYAYKDYPSIIKNAGLNGCKNGGSDQAARTSSIDEVAREVINGAWGNGNERKQRLTQAGYDYTSVQNKVNKLLGVKACRKSVDELAREVIRGTWGNGNERKNRLTQAGYDYDTVQKRVNELL
complement(31036..31455)           PHAGE_Bacill_PfEFR_5_NC_031055: hypothetical protein; GVAMD_RS0105845; phage(gi100023)     3.22e-30            GardnerellavaginalisAMDMRGFWNSAQLAFTLVGGWLGYFLGGCDGLILALVLFVVADYITGVMCAVTDKKLSSSIGFKGIFRKVLIFMLVGIANIIDFHVLKQGSVIRTAVIFFYLSNEGLSLTENAAHLGLPVPEKLKNVLEQLHDKNRKDNTHE
complement(31612..31935)           toxin; GVAMD_RS05325                                                                 N/A                 GardnerellavaginalisAMDMVKPTISYAVAVQKYKAELNEKIVELNKQIPIPTYMIEGIVASVLSDMRSAVIAENSMEYEAYVKQLEDYFNSRERELNDEILKIKAEKAEKTETAEKGEDAEECVK
complement(31916..32098)           hypothetical protein; GVAMD_RS05320                                                  N/A                 GardnerellavaginalisAMDMEKLIIPTNKIVANKGTRLKDVTESITTPVVDNTKILCEISHKLDIILKRLEESSGETDN
complement(32205..35012)           PHAGE_Clostr_phi8074_B1_NC_019924: putative phage tail protein; GVAMD_RS05315; phage(gi431810378)     9.45e-19            GardnerellavaginalisAMDMLDGNTIYYPNDDKAVLDDITLNLELNTAGTLTFTCPSQNPCYELIKNRKSIVSVWRDDEEIFFGEVREQVKDLYGSKKVTCVGLLTYLADSIQPQKEYHDQSSYQLLEKLLQAHNSQVDDYKKIRIGFVTVSDSNDSLYRFTNFETTLEAIMGKMVEKLGGYLRLRKEDGKLYLDYLHLEEIGKATSQHISFGLNLLEYAENLSAEDVTTAVIPLGKELENENGENEVLKKHVDITSINNGKNYIVSREAQKTFGWVCKVVNFNNVTVPTNLMRKAVKWLQDNQFEHVEISLSAVDLSELGLYYATIKCGDRVRCLAPQFGMDRVFPVVKKTIPIQKPGEVRIVLASRISKGYVQNVSHAVQTLKEEAVEARKIDNERVKAAIDNIKAQMGNSQSGYKISEYDSKGMWVRDLYMDTPDKNTATKVLQVNMNGIAGSHNGFSGPYSTAMTLDGMVYGDRIIGHSIDAEKLSVSYTSQVEKQISKAKNEAIKDTGRRLENYYTISEINTKLNVTDGKIEAGVESVNHSLKQKNGNYYGSYTPSQFNAPMSLWLNDSEKMQHVGDFFYDTSTGYAYRLIVKQESLAVKFNEKSHTESAFDDFVDIFYKYEDKIYAIPGLTGEKISGATVFVPSSEFWLHFRTNWSPFDNYGFKIDSIKKEYSGEISGYVSKPPEDINIIEVEGENYPESEHPYKGGTSKLWHYVSADSISSFRTFAWIRVKDKDIEAAKFTADKAISKLTIVEDSISSMVKKGDFGSFMQQNYNSFLLGFNHSSKYVQITPGQIELYDGEVDEDHKRAVFDKNGNNFYRNGVYIGYVGTGEWEEDNSHKGLVFHLTSDGKYMAFAQRKSADEETYATMLCFSRSQSIYKEYGIHAGCNFYMHGNKIIDPVWQDGAGVDADINYVQIIEMNQDGKASKWGSNAHMVFKNGILMKVKYY
complement(35025..35687)           PHAGE_Clostr_phiCT19406C_NC_029006: tail protein; GVAMD_RS05310; phage(gi971821558)     5.25e-06            GardnerellavaginalisAMDMYGMLINGLHSFNDLGLVATSRPLVQLPEPKLEYLQIPGRQESIDISESLAGEVLYEMREGCFEFIVANKNKWSETCHSVKTLIHGKSVKLSLDDELLFYYQGRVWVSGFKSDKNYSTLTLNYKLQPYKYSVDDSDGVHTIWGVQVDDKREITLVHDFDMTLIPEFNNLSSNSMLLDSNGKKYEIKTGVNRFPQLRSKINMSLTFVGNGMVNISYKRGWL
complement(35690..38257)           PHAGE_Lactob_PLE2_NC_031036: hypothetical protein; GVAMD_RS05305; phage(gi100015)     3.00e-45            GardnerellavaginalisAMDMANRIKGITVEIGGDTTGLDKALKDVNTTIRSTQAQLRDVNRLLKLDPTSTQLLSQKQAFLQKEIQETSNKLNVLKQADKQAKVQLENGELGRDKYDALQREIVETENNLDSLKEKLKQVGSVSLTKLSSQFDSTSKKIKKLGDGMSSLGQSLSTKVTLPIAAIGTAGFTAAADLQDAMGATEQIYGKSANKMLKWSGSLKSYYGIAQGQALEYANTMGAMLKNIGGKSDAEAAEMSQKLVALAGDLSAMFGGTTESAVLALTGALKGNNAMLDNYGMGVNEATIKAKALAMGLHDGRGAMSLQAKQAATLALIMEQTADAQGQAGREAAGASGSMKILKTELQNIAATIGNVLLPVITPLMQKISAWLSKFKQLSPESQKLIVTLGLIAAAVGPFLVVLGTCISKIGVAIQGFSKLALFIGKMFASFTSGSSILEGLGAVLGGVSAPILAVVAVIGVLVAAFVTLWNTNEEFRNSVIAVWEKIKETFTGFVNGVKEKLSSLGIDFTSIVEGLKTVWNGLCAILAPLFEGALNLSFTSFKAVLDLITGVLDVFIGLFTGNWSQLWDGVKEIFTAVWNAVKNTFITVFNTLKNVFNVFLSFFGTSWNKLWLSVKNFFMNVWNGIVSFFTNVLNGIKNTATSVWNGIKTAIMSVVNGIKTSISTVFNSVANMVKSVFNGIKNTVVSVWNGIKNAIITPIEAAKNKVKAVIDAITGFFSGIKLSLPHIKLPHFSIKGQFSLTPPSVPYLAIDWYKKAMNKPMLLNGATIFGEKNGRMLGGGEKGPEVIMGLNSLENMTTGANTQMLSVMNQILAIMDAYFPQFSNQSIVLDTGELVGGIAHRMDSELFKLQTRKARGW
complement(38501..38866)           PHAGE_Bacill_1_NC_009737: hypothetical protein; GVAMD_RS05300; phage(gi155042944)     1.61e-16            GardnerellavaginalisAMDMLEKTVKVNGKDVKFRSSATIPRLYRIKFKRDIFKDLSKLEQSFKINEGVFEISDLEIFENVAYIMAYHADNSIPASIDEWLDEFEMFSIYEILPEILELWGANLETEVKSKKNLKQQHGK
complement(38884..39456)           PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; GVAMD_RS05295; phage(gi100009)     3.73e-37            GardnerellavaginalisAMDMGNKVKYNLKNVYAAKLKKDSSGFSYDEPKPIPGAVSISLEAEGESSPFYADGIVYFRSTANNGYSGDLEIALIPEWFRTEILREELDKNGVLVENAKISETEKFALLFEFDGDVNAIRHVLYNCSATRPSIESETKEDTIEPGTETLSLTADPREDGLVKSRSGDTTSKETYEKWYKSVYVPQANAENK
complement(39440..39778)           PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; GVAMD_RS05290; phage(gi100010)     4.89e-07            GardnerellavaginalisAMDMGNLLSIMREIGFPFAYHHFAEGESPNPPFLLFLTPASSNFAADGKTYFKANEVHIELYVDYKNPVLEEQVEAVLDRHGIFYNKTETFIESEQLYETLYIFEMEVTENGKQG
complement(39771..40151)           PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; GVAMD_RS05285; phage(gi100011)     1.18e-14            GardnerellavaginalisAMDMSKVSIGSLSKEVIRELKTYAKVTTGKVKEAVKNAGKTAKEEINMTAPKRTGAYAKSWAVKTLNETGSRLVLVVHSRNKYQLTHLLEYGHAKRGGGRVEARAHIAEAESKAVRSFEKEIEEAVKNG
complement(40148..40480)           PHAGE_Clostr_phiCT19406C_NC_029006: head-tail adaptor protein; GVAMD_RS0105850; phage(gi971821549)     6.90e-06            GardnerellavaginalisAMDMRISLLNERIVLLKNSVEVDEVGNHKIKWSKYYECYATVSAESPMEQTSAGNVWDESKIDFTIRYSKETAVVSSLGYRIIFRDTVYEILGVDHMNYKKKSLKLHCKRCKK
complement(40481..40759)           PHAGE_Geobac_E2_NC_009552: putative DNA packaging protein; GVAMD_RS0105855; phage(gi148747734)     7.37e-07            GardnerellavaginalisAMDMIVTVEEAKNYLRVDSREDDELINTLIRSAEKLCQGVARKNDRSLISENFDEYRLAVLYATGYLYEHREEADHHALTITLRSMLFTVRKTGF
complement(40790..41974)           PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; GVAMD_RS05280; phage(gi100008)     3.24e-34            GardnerellavaginalisAMDMMNTISNMVEKRNKAWQGAKAFLESKRDKDGLISEEDAKTYDEMEAKVKAYSMEIDRLEQMEKMDKELSKPTSEAIVAKPMKTGVKFEKQGRARDEYKQAMLTALRSNFKKLDNILQEGIDADGGYLVPEEYDNRLIETLKEENIIRSLATTITTSGEHKINIAMSDPAAAWIEEGASLNFGDSKFAQILLDAHKLHVAVKVTEELLYDNAFNLENHILTSFGMALANAEEDAFLNGDGVGKPTGIFNKKDGGTFLKETTSIKTDDLIDLIHALRRPYRKNASFIMNDKTVASIRKLKDNNGAYVWQPSYQDDEPNRILGYPVYTSAYAPENMVAFGDYSYYNIGDRGSRSFKELTELFAGNGMIGFVAKERVDGKLVLKEAVQILPVKTSVAA
complement(41977..42711)           PHAGE_Bacill_vB_BhaS_171_NC_030904: hypothetical protein; GVAMD_RS05275; phage(gi100008)     1.44e-34            GardnerellavaginalisAMDMRKFWQWKNQKVNSENNEILERTLFLNGTIAEESWFDDDITPQLFKDELNAGSGNITVWINSPGGDCVAAAQIYNMLMDYKGCVTVKIDGIAASAASVIAMAGTKVYMSPVSMLMIHNPMTVAFGNRDEMEKAISMLDEVKESIINAYEIKTGLNRVKLSHLMDSETWMDANKAVELGFADGVLTRGETADIGIPQVSTLYSKASVQNTLLEKICKACRISGKETNNISADDLMDRLFLIKNWR
complement(42828..43595)           hypothetical protein; GVAMD_RS05270                                                  N/A                 GardnerellavaginalisAMDMSKKKMYISLGTLLLLVLFVFTGIFIIGNNPASKNSGNIAHKLMPVNVAYAETLDDIKGSMNKLMVELETETKTNPQVAMQAHPGKFIRNSKNYQRILKLGLKAIKPLYDAIYDSRDAGCYEYILAMAIEDITGEKFVYNSDYGWKNSLEFRMAYDEKVNNTRFNVERISNNETLNDHDRTQKFKELGIFAVSDLIKEYRKSDSKVSKPSILEAVKGITSKYKELAITERTPTESILDETQLFDSLVSLNGRAYK
complement(43617..44099)           hypothetical protein; GVAMD_RS0105860                                                N/A                 GardnerellavaginalisAMDMIRKRKMLSAITTYVMVVGMLFFTSNSVAYAYTLSQPKSFYDSISWTWFYSDKATPAYNCLGFATGSMTYEWPSDFGDDGATKAQLDNYLAKKGYRPYKYDPFILAYGHSPDKIVHFAKVTGLKWCRAKWGQLELFNHGSHDPYYPNSVYGSLQHKYTAN
44302..44313                       attR                                                                                 N/A                 ATTCTATTTTTC
complement(44439..45686)           PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; GVAMD_RS05265; phage(gi100031)     4.34e-83            GardnerellavaginalisAMDMSIFSKIFKSRDKPENRFNLNAQRFISGMSSSGKRVNERSAMQMTAVYSCVRILSEAVASLPLHVYEHTSTGTAKAVKHPLYKVLHDEPNLEMTSFVFRETLMTHLLLWGNAYAQIIRNGKGEILGLYPLMPDRMRVDRDESGQIFYEYTLNDSDVLAGKETSVKLKPFDVLHIPGLGFDGLVGYSPIAMAKNAIGMAIATEEYGASFFANGATPSGILEYPGTVKDPQSMRDSWNKGFSGSNSHKIAILEEGMKYTPISISPNEAQFLETRKFQINEIARIFRVPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPWVARFEQSITRRLFTDKEKETYYVKFNVDGLLRGDYQSRMNGYATARQNGWMSANDIRQLENLDKIPACEGGDLYLINGNMLPLNRAGAFTVIGRNKLGD
complement(45698..47290)           PHAGE_Gordon_Zirinka_NC_031097: hypothetical protein; GVAMD_RS05260; phage(gi100002)     5.08e-94            GardnerellavaginalisAMDMEKYEVTKFKKEDSTYSKDLADYAVSFIECLTHTKGTWAGKPFKLLAWQEQIIRDLFGVVKPNGYRQFNTAYIEIPKKMGKSELAAAVALLLCCGDNEERAEVYGCAADRQQATIVFDVAADMVRMCPALNRRVKILASQKRIIFLPTNSFYQVLSAEAYSKHGFNIHGVVFDELHTQPNRKLFDVMTKGSGDARMQPLYFLITTAGTDTHSICYETHQKAVDILEGRKIDPTFYPVIYGAKDSDDWTDPKVWKKANPSLGVTVQMEKVKAAFESARQNPGEENAFRQLRLNQWVKQSIRWMPMEKWDACGFQVNEEELEGRVCYGGLDLSSTTDLTAFSLVFPPLDESDKFRILPYFWVPEETLSLRVKRDHVPYDVWEKQGFIKTTEGNVVHYGFIEKFIETLGERFNIREIAFDRWGAVQMVQNLENMGFTVVPFGQGFKDMSPPTKELMKLTLEQKIAHAGHPVLRWNMDNIFIRTDPAGNIKCDKEKSTEKIDGAIATIMALDRAIRCGNANTQSVYDARGILFM
