gi|00000000|ref|NZ_AJTU01000001.1|  Salmonella enterica subsp. enterica serovar Typhimurium str. 813657, gc%: 52.12%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
74959..75004                       attL                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA
complement(75019..76182)           PHAGE_Entero_ST104_NC_005841: Int; OG1_RS27965; phage(gi46358652)                    0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSLFRRGETWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAEAWRVNKLGETPDMTFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGMQLKDITETKIYSAIQKMTNRRHEENWKLMDEACRKNGKQPPVFKPKPAAVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAKRLIDECPEPLKSVVEFALSTGLRRSNIINMDWQQIDMQRKVAWIHPEQSKSNQAIGVALNDTACRVLKKQIGNHHKWVFVYKESSTKPDGTKSPVVRKMRYDANTAWRSALKRAGIEDFRFHDLRHTWASWLVQAGVPISVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSIFGTSVPNMSHSKNKEGTNNT
complement(76095..76409)           PHAGE_Entero_ST104_NC_005841: Xis; OG1_RS25290; phage(gi46358653)                    5.77e-73            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MESHSLTLDEACAFLKISRPTATNWIRTGRLQATRKDPSKPKSPYLTTRQACVAALQSPLHTVQVSAGDDITEELKCHYSAEVKPGTPVSHCRTAKDLSSLLGQR
complement(76412..76552)           PHAGE_Salmon_SEN22_NC_028696: formate dehydrogenase N alpha subunit; OG1_RS27970; phage(gi966201338)     4.83e-23            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MMILVISATYLCRRGDIDGAVYAGIAIFGFIELLVEIALLASVLGK
complement(76621..76905)           PHAGE_Entero_ST104_NC_005841: ORF6; OG1_RS0100405; phage(gi46358654)                 2.41e-65            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MANLQLAVKGEYFDAMIRGEKTEEYRLCNDYWNKRIMFREYDRLIITKGYPKRDDSSRRIDVPYDGYEIKTITHPHFGDKPVKVFAIKMNIGNE
complement(76898..77182)           PHAGE_Entero_ST104_NC_005841: ORF7; OG1_RS0100410; phage(gi46358655)                 2.72e-65            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MDPFAKYTIIDWIAFLQVLLIWFYMAYRSGQWIVSVACSKGWRWWNRKNKKALALDSFYEAFNLNSLQPGSVVVVTTQSGMTIQIHKPKEEGRG
complement(77182..77826)           PHAGE_Entero_ST104_NC_005841: ORF8; OG1_RS0100415; phage(gi46358656)                 1.56e-159           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSKIDYQALREKAEKATCGVWSLEYGEERFDAGDALIHREVVGYLPICRIEGAHPESGFDEDFQMEQQANAEFIAAANPATVLALLDERERNQQYIKRRDQENEDIALTVGKLRFELEAAKKRIAELEAEPVSQTYKLNELSGSYPATPDGWISCSERMPNEEDVLVYCSDTKEQMVGFHKGKGLFQFFYMNGVEGVCEPSHWMPLPEPPQEVK
complement(77813..78046)           Lar family restriction alleviation protein; OG1_RS25295                              N/A                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTNLLPCPFCGGAAHVASEADHPEYGSGGRFYFVRCGTCRAQSGSKYAAPGNDCAIFYSEVRAEWNQRAKEATSEQD
complement(78043..78552)           PHAGE_Entero_ST104_NC_005841: ORF9; OG1_RS0100420; phage(gi46358657)                 7.27e-121           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKQMTLIEMDGFLKGKCIPRDLKVNETNAEYLVRKFAEAEAKISALAEDHQRAIESIKQADSAVKLAHEKFSALASENAALKKSEVEFNEYCRRECEDVGDTWVDDFTDTPATDAFLDEVRAQAFNDLCSAFVKDATVVGLDDGDIVTVKEATDALLHCADQLRKGVHS
complement(78549..78719)           PHAGE_Entero_ST104_NC_005841: ORF10; OG1_RS25300; phage(gi46358658)                  2.60e-35            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MRGLSYDQGILPSEMIIRHRFKPINDIPREEMLARKSFPSVNQNKYLNAMWRSGKK
complement(78730..79023)           PHAGE_Entero_ST104_NC_005841: Abc2; OG1_RS0100430; phage(gi46358659)                 1.58e-65            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MPAPLYGADDPRNCSGSSKSEVLENIKNNLDAFLALPPETKAERKYRRDIQLAEKQEKDRINETAIRPFRKATYTKFIEIDPRLKNYRSRYGAISNN
complement(79070..79354)           PHAGE_Salmon_UPF_BP1_NC_047875: capsid maturation protease; OG1_RS0100435; phage(gi100067)     1.06e-64            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MRRLNITPAEMESVCGRMVACRAAEHLGLNINQFYYIAKKLSLKTAFVKPRWSDDEDKRMQTLISSGYTQRNVAKILGRSEESVKSRLSRLRKK
complement(79354..80061)           PHAGE_Entero_ST104_NC_005841: ORF13; OG1_RS0100440; phage(gi46358661)                4.37e-176           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MNLDLLDEPFAAEDIEWRIQQSGKTRDGKLWAMVLAYVTNRAIMKRLDDVCGKAGWRNEYRDIPNNGGVECGISIKIDSEWVTKWDAAENTQVEAVKGGRSGAMKRAAVQWGIGRYLYNLEEGFAQISRDKKQGWHRAKLKDGTGFYWLPPSLPDWAMPASCNQPSPENTNQKSPSVDCEQILKDFSDYAATETDKKKLIERYQHDWQLLAGHDDAQTKCVQVMNIRINELKQVA
complement(80058..80201)           PHAGE_Salmon_vB_SosS_Oslo_NC_018279: Arf protein; OG1_RS28120; phage(gi399528801)     8.69e-25            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MLHDFDDNEFIALIPPEIEEEVEQQINLAAERQNPIISWDEFAGYYS
complement(80191..80379)           PHAGE_Entero_ST104_NC_005841: Kil; OG1_RS0100450; phage(gi46358662)                  1.55e-40            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTITPVNGTILVQQGNREFNKLYEKVFPDTKQGMSDAYTWAAGIALGWDKWQDEEWEARHVA
complement(80360..80518)           PHAGE_Entero_ST104_NC_005841: C3; OG1_RS25305; phage(gi46358663)                     2.58e-32            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTFAIAGGAVMGIAQLNESLLERITRKLRAGWKRLGEILNQPGVPRHDHYAC
complement(80603..80917)           PHAGE_Entero_ST104_NC_005841: hypothetical protein; OG1_RS0100455; phage(gi46358664)     1.10e-72            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKLRVWHIPQVPMKPFIVEVASVEEGVRVMDALADYDAFQYDNNIKPDYCNANGLEMWDESLTDQDLEEMELTDRWVDWYSECQCYDDPREYIESLKEETTTAA
complement(81193..81480)           PHAGE_Entero_ST104_NC_005841: ORF18; OG1_RS0100465; phage(gi46358665)                6.69e-66            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKKFKGTPGPWSGKDVRICRQDRAGLQLGFIMTHDENRVAECEANAHLIAASPDLLEALQLAEKAMAEGRNVTYPEWYGVINKARAAISKALGEE
complement(81514..82158)           PHAGE_Entero_ST104_NC_005841: ORF19; OG1_RS25310; phage(gi46358666)                  4.25e-152           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MNSADLSKILEEHKVWITSMRESGSRANLYGADLYGANLRGADLRDADLCGADLYGANLRGANLYGANLYGANLCGANLYGANLRGANLYGANLRGANLYGADLYGANLRGADLRDADLCGADLRDADLPDLTFVILGEKYFISITNGEYVRAGCQNHTVEEWRKYSKQEIAEMDGRKALKFYPRLLDIIDFYIGKGERPDWLTSKEYADEVTE
complement(82242..82436)           PHAGE_Entero_ST104_NC_005841: Ral; OG1_RS0100480; phage(gi46358667)                  4.60e-40            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTTTIDTNQWCSRFVKCKGCKLDAECMVKPEEMALVREDGKIVDKWAIRTTAMIARELEKLKST
82650..83237                       PHAGE_Entero_ST104_NC_005841: SieB; OG1_RS0100485; phage(gi46358668)                 1.67e-143           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MNNSWWQELMRFFLQGMTLKQLIHMIIILILLIVVMPVSVKEWVNLHNPEILPQYWMYYILLFCVSYVLNGVVNSVYHVVNERIEASTAQQRKAREEKVVRDLFDSLTLGERAYLAFAVAANNQLKTEKGSPEAISLLEKGLLIRIPSATGYPDTDRFVIPESYRNECYIRFAGESDILMNELIAQDEQAKKITT
complement(83250..83552)           PHAGE_Entero_ST104_NC_005841: gp24; OG1_RS0100490; phage(gi46358669)                 2.67e-68            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTVITYGKSTFAGNAKTRRHERRRKLAMERDTICNIIDSIFGCDAPDASHEVKAKRIDRVTKAISLAGTRQKEVEGGSVLLPDVALYAAGYRKSKQITAR
83916..84119                       PHAGE_Salmon_118970_sal4_NC_030919: hypothetical protein; OG1_RS0100495; phage(gi100018)     9.36e-39            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKSEEEFFAELHPQVVEVLGTALMQVLVEQREPSREALIEMIQVLWQEEDVDLAVELAIDVLTLPKE
complement(84158..85237)           PHAGE_Entero_ST104_NC_005841: ORF23; OG1_RS0100500; phage(gi46358670)                0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MQAHFTTKSACIMSDKESKEPTGKSKGGVARANALSAEERSAIARKAAAARWGGDGEVEIAKRSGDIVIGDLKIQCAVLEDGTRVLSERAITKAFGGKRGGSHWKRMKENPDGAYLPVFLSAKNIKPFINNELSEGLSRRRLFKINKGAAPAYGIEASLLPKICNVYLKMRDQGDALQSSQIPISVQADIIMRGLAEVGIVALVDEATGHIDEKRQDEYRILFQEFIKEQVREYEKEFPKQFTDGLYRLYGLTQKKAGRHPQFFGKFTRKYIYEPLASSKGAILEMLDEKNPVVYANGGRRYKMFQFLTDSIGVPMFRAHLWQVVGILSSSRNKAEFDRAFKRAFPSPGTQFELLDEDE
complement(85402..86091)           PHAGE_Entero_ST104_NC_005841: CI; OG1_RS0100505; phage(gi46358671)                   1.77e-168           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKKETLSDRLNKAMELAGMSQGALAKASGVAQPTIWRLTSGNARGSTKIVEIANALGVNSEWLSTGIGPMKKDGTTPINASPSSNTFKIDILDLEVSAGPGVINREFVEILRSVEYSQDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDVSIKNFDGDGIYAFLYDDTAHVKRLQKMKDKLLVISDNKSYSAWDPIERDEMNRVFVFGKVIGSMPQTYRKHG
86202..86417                       PHAGE_Entero_ST104_NC_005841: Cro; OG1_RS0100510; phage(gi46358672)                  2.12e-44            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTNKAIQKAVAIAGSQQKLASLCGVKQPTVWRWLHGGGIDAKYVAAIVKATGGRIKARELRPDLADLLAAS
86528..86809                       PHAGE_Salmon_BTP1_NC_042346: DNA adenine methyltransferase; OG1_RS0100515; phage(gi100041)     2.00e-62            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MNVVATKSKKAARIESTLLNKLAMMGQKTFAKAMGVPEYQVSRWKNGFFSQVSMMLAVLEYGIEDEEMAELTRRLATYLTKEKAPKNGEFFEA
86844..87005                       PHAGE_Escher_SH2026Stx1_NC_049919: hypothetical protein; OG1_RS28125; phage(gi100025)     2.65e-31            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTKRRKKYQEKEEIRHPDSPEGLVVAAANNRAFAERLVGVYRLAKAGVKHGRR
86992..87813                       PHAGE_Entero_ST104_NC_005841: gp18; OG1_RS0100525; phage(gi46358675)                 0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MGVVKLADYRPHLEVVEHRVADTEDGFMRVANEITDSLLMADLTVRQLKVMLAIMRKTYGFNKPMDRLTNTQIAAMTGIHHTHVCAAKRQLIERKFLIADGVKIGVNKVVSQWISQDSLTLAKTANKTLAKSANGYKPSQLNTKDNIQKTINTNTPLPPNGGGDGQVKPERRKAERIDYESFLNAYNTEVGDRLPHAVSVNEKRKRRLKKIIPQLKTPNVDGFRAYVRAFVHQAKPFYFGDNDTGWTADFDYLLREDSLTGVREGKFADRGIA
87810..89186                       PHAGE_Entero_ST104_NC_005841: gp12; OG1_RS0100530; phage(gi46358676)                 0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MRQDIEASVIGGLLIGGLTPTASDVLATLEPEAFSIPLYRKAFEVIRKQARNRNLIDGLMVAEECGDEYATAVMMTARSCPSAANLKGYAGMVVDSYQRRQVLQLLDEMREPISNGTLDASGRAMDDLVKRLSAIRKPRNEVKPVRLGEIINDYTDTLDRRLRNGEESDTLKTGIEELDAITGGMNAEDLVIIAARPGMGKTELALKIAEGVASRVIPGSGVRRGVLIFSMEMSAIQVVERGIAGAGMMSVSVLRNPSRMDDEGWARVASGMKLLADLDVWVVDASRLSVEEIRSISERHKQEHPNLSLIMADYLGLIEKPKAERNDLAIAHISGSLKAMAKDLKTPVISLSQLSRDVEKRPNKRPTNADLRDSGSIEQDADSIIMLYREAVYDENSSAAPFAEIIVTKNRFGSLGTVYQRFCNGHFVACDQDEARQICTASNAPAARGRRYAQGADV
89183..89452                       PHAGE_Entero_ST104_NC_005841: ORF30; OG1_RS0100535; phage(gi46358677)                2.19e-61            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MNKKQLAILEKAWDAQISYALKEQALPIIQTKSKIARQLCDDGFLNEVEITHQMATFKGYEINHHGIAAYCSHLPDDVDIDEMEREMKQ
89526..89963                       PHAGE_Entero_ST104_NC_005841: NinB; OG1_RS0100545; phage(gi46358678)                 3.54e-104           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKKLTFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLCDVSRQVNWHGRWLDAESWKCVFTAALKQQDVVPNLAGNGFVVIGQSTSRMRVSEFAELLELIQAFGTERGVKWSDEARLALEWKARFGDAA
89960..90133                       PHAGE_Entero_ST104_NC_005841: NinD; OG1_RS28130; phage(gi46358679)                   1.86e-37            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKHCYRCGESKDDYRFRPNQPYWHQWCIRCERSPVGNFPLPETKGDVWHDSDEVSPT
90100..90276                       PHAGE_Entero_ST104_NC_005841: NinE; OG1_RS25325; phage(gi46358680)                   4.01e-36            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MARQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRERARK
90279..90620                       PHAGE_Entero_ST104_NC_005841: hypothetical protein; OG1_RS0100555; phage(gi46358681)     1.21e-81            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MDYSQLSDFEINRMVGDIIFKGLWACKPETSGNNTNKWYYGNADTTFEPLNHLPDYCNDPSASWPIIEKHRISILDQLTEWCVDAKGVSPIFDTRPLRAAMIVFLMMQDANNA
90613..90789                       PHAGE_Entero_ST104_NC_005841: NinF; OG1_RS0100560; phage(gi46358682)                 5.44e-36            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEHCCAELMSDPNSSMYEEEDDG
90782..91393                       PHAGE_Entero_ST104_NC_005841: NinG; OG1_RS0100565; phage(gi46358683)                 2.24e-147           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MAKPARRRCKNEECREWFHPAFANQWWCSPECGTKIALERRSKEREKAEKAAEKKRRREEQKQKDKLKIRKLALKPRSYWIKQAQQAVNALIRERDRDLPCVSCGTLTSAQWDAGHYRTTAAAPQLRFDERNIHKQCVVCNQHKSGNLVPYRVELINRIGQEAVDEIESNHNRHRWTIEECKAIKAEYQQKLKDLRDSRREAA
91390..91614                       PHAGE_Entero_ST104_NC_005841: NinY; OG1_RS0100570; phage(gi46358684)                 1.13e-50            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSKIQYPMTTAAIFDDVVYPLHFDNAGKVRQEMEGAVNWFCRWRNEEKAVVKARLLVSCWGQYLSHEQVIREAA
91611..91814                       PHAGE_Entero_ST104_NC_005841: NinH; OG1_RS25330; phage(gi46358685)                   1.10e-43            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTHTIKTIPDMLIETYGNQTEVARRLSCHRNTVRRYLYDKEARYHAIVNGVLMIHQGGRGIYDRNQH
91795..91974                       PHAGE_Entero_ST104_NC_005841: NinZ; OG1_RS0100575; phage(gi46358686)                 8.96e-37            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTVTSINQAKQQCERDEAELRSVREMTEQHQKAMDYLHERERELVNRLGLNKTSGGDAA
91971..92744                       PHAGE_Entero_ST104_NC_005841: gp23; OG1_RS0100580; phage(gi46358687)                 0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MNLENTVKFHSPKSPQLSDSPRATASDSLTNTDVMAAFGMAQSRAPLGFSAFSGKMNLSDNDKRKAIQLLVQHGMKHCDKVAALRKLDTNVKGKVVQTLATFAYQDYCRSAASNVMCSCCKGRGVLRNKKRIVKHPGCGEKTPAKTAVEVTESLCTKCNGAGVVSTSCVKCRGRGVALDRKKSELQGAPVYSSCKQCSGRGYERIPAASCFRAICQFTAAISPGVWDKAIKPFYESLISKVEMEESAANVVLSKVTS
93175..93378                       PHAGE_Salmon_SEN22_NC_028696: class II holin; OG1_RS0100585; phage(gi966201365)      9.81e-43            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MYRMDKIREWFSYSFGGLTAMGGILSLNDWAVIIGILCTVGTFGINWYYKRKEREDRLNGNVTGTTK
93356..93853                       PHAGE_Salmon_SE1_NC_011802: Gp19; OG1_RS0100590; phage(gi219681236)                  2.54e-119           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSPALRNSVMAAISGGAIAIASVLITGPGGNDGLEGVRYKPYKDVVGVLTVCYGHTGKDIMPGKTYTEAECKALLNKDLITVARQINPYIKVDIPETTRGALYSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREVERDVCLWGKQ
93850..94317                       PHAGE_Entero_ST104_NC_005841: gp15; OG1_RS0100595; phage(gi46358690)                 1.39e-109           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSRLTSIISALVICIIVCLSWAVNHYRDNAITYKVQRDTVTQKLALANATITDMQTRQRDVAELDARYTKELADAKAENDALRRKLDNGGRVLVKGKCPVSSSAETSSASGMGNDATVELSPVAGRNVLGIRDGIISDQAALRTLQEYIRTQCLK
94530..95060                       PHAGE_Entero_ST104_NC_005841: ORF45; OG1_RS0100600; phage(gi46358692)                1.48e-128           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKYPTVMVNGVSVRVDEDGRYNLNDLHAAAVANGEATEQQRPSKFLCSAQIKRFIKALEAKVQKSTLKQIQPLKIIKGGTEPGVWGVELLAIRYAAWIKPEFEIEVYEVFKTIVRLGVGAMSRLNKIDHIISTETKAISQCASQMAKWGVGGRTRLLHVARERAANEVQMYLPGMV
95283..95525                       PHAGE_Entero_ST104_NC_005841: hypothetical protein; OG1_RS0100605; phage(gi46358693)     3.23e-48            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MAEITALTELQQMNLDILRLVQSDTAAAEKAIAFVAGSKLNFELFKDQLVLAQGEGTALARAEKAIREAKEALDLFTAGA
95529..95918                       PHAGE_Entero_ST104_NC_005841: hypothetical protein; OG1_RS0100610; phage(gi46358694)     3.05e-94            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MAKTKWPKLPRFFVPLFHSANVYLCRSKEEWDQACIHLGVGSGGNEMLAGATQSYCNTETGENLYLLGVFNGEAATLVHECAHVAFYVCRDVGVTTYPGDANETYCYMLDRMFSHFLPFFHEPEKEGAK
95918..96322                       PHAGE_Entero_ST104_NC_005841: ORF48; OG1_RS0100615; phage(gi46358695)                7.79e-93            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MANPNFTPSWPLYKDADGVYVSALPIKAIKYANDGSANAEFDGPYADQYMSAQTVAVFKPEVGGYLFRSQYGELLYMSKTAFEANYTSASGSVANAETADKLSTARTITLTGAVTGSASFDGSANVTIETTSGS
96326..96814                       PHAGE_Entero_ST104_NC_005841: Gp3; OG1_RS0100620; phage(gi46358696)                  1.25e-118           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MAAPKGNRFWEARSSHGRNPKFESPEALWAACCEYFEWVEANPLWEMKAFSYQGEVTQEPIAKMRAMTITGLTLFLDVTLETWRQYRVREDLSEVVTRAEQIIYDQKFSGAAADLLNANIIARDLGLKEQSQFEDVTPDKGDRDKRRSRIKELFNRGTGRDS
96792..98291                       PHAGE_Entero_ST104_NC_005841: Gp2; OG1_RS0100625; phage(gi46358697)                  0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MELDAILDNLSDEEQIELLELLEEEENYRNTHLLYEFTPYSKQREFIDAGHDYPERCFMAGNQLGKSFTGAAEVAFHLTGRYPGTKGYPADGKYGGEWKGKRFYEPVVFWVGGETNETVTKTTQRILCGRIEENDEPGYGSIPKEDIISWKKSPFFPNLVDHLLVKHHTPEGVEDGISICYFKPYSQGRARWQGDTIHGVWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFLKNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEETIKCQPFECPDHFYVIDAQDFGWNHPQAHIQLWWDKDADVFYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGFSMLPDHATFPDGGNSVESGISELRDLMLEGRFKAFNTCEPFFEEFRLYHRDENGKIVKTNDDVLDATRYGYMMRRFARMMRDIRKPKEKKIPAPIRPVRRGR
98291..100468                      PHAGE_Entero_ST104_NC_005841: Gp1; OG1_RS0100630; phage(gi46358698)                  0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MADNENRLESILSRFDADWTASDEARREAKNDLFFSRVSQWDDWLSQYTTLQYRGQFDVVRPVVRKLVSEMRQNPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSNNQVIRREPIHSACSHVIWDSNSKLMDKSDARHCTVIHSMSQNGWDDFAEKYDLDADNIPSFQNPNDWVFPWLTQDTIQIAEFYEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDENNGEMPTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAVNGGQVAYDTVNQLNMRADLETYVFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRSEILELLGKTPQGTPEYQLLLLQYFTLLDGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQTLSLQIDAAKVEAQNQLNAARIAEIFNNMDLSKQSEFREFLKTVASFQQDRSEDARANAELLLKGNEQTHKQRMDIANILQSQRQNQPSGSVAETPQ
100482..101393                     PHAGE_Entero_ST104_NC_005841: Gp8; OG1_RS0100635; phage(gi46358699)                  0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MEPTTEIQATEDLTLSGDHAAASADSLVVDNANDNAGQEEGFEIVLKYDETAPKQDPAKNAEFARRRIERKRQRELEQQMEAVKCGELPESLRVNPDLPPQPDINAYLSEEGLAKYDYDNSRALAAFNAANTEWLMKAQDARSNAVAEQGRKTQEFTQKSAQYVEAARKHYDAAEKLNIPDYQEKEDAFMQLVPPAVGADIMRLFPEKSAALMYHLGANPEKARQLLAMDGQSALIELTRLSERLTLKPRGKQISSAPPADQPITGDVSAANKDAIRKQMDAAASKGDVETYRKLKAKLKGIR
101393..102685                     PHAGE_Entero_ST104_NC_005841: coat protein; OG1_RS0100640; phage(gi46358700)         0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MALNEGQIVTLAVDEIIETISAITPMAQKAKKYTPPAASMQRSSNTIWMPVEQESPTQEGWDLTDKATGLLELNVAVNMGEPDNDFFQLRADDLRDETAYRHRIQSAARKLANNVELKVANMAAEMGSLVITSPDAIGTNTADAWNFVADAEELMFSRELNRDMGTSYFFNPQDYKKAGYDLTKRDIFGRIPEEAYRDGTIQRQVAGFDDVLRSPKLPVLTKSTATGITVSGAQSFKPVAWQLDNDGNKVNVDNRFATVTLSATTGLKRGDKISFTGVKFLGQMAKNVLAQDATFSVVRVVDGTHVEITPKPVALDDVSLSPEQRAYANVNTSLADAMAVNILNVKDARTNVFWADDAIRIVSQPIPANHELFAGMKTTSFSIPDVGLNGIFATQGDISTLSGLCRIALWYGVNATRPEAIGVGLPGQTA
102726..103286                     PHAGE_Entero_ST104_NC_005841: ORF54; OG1_RS0100645; phage(gi46358701)                1.47e-134           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MGVMLYKQGRGTKVWGKDVQVKVVDDGDVEDHLADGWVRHPNEVPETNDEPIGDSGVVKKDMGEVSDGYHTFNELYAHRVRLFSTLMNAFRESAWWSFQHHDGEQWDGWVLAGIDTPEGAVTYHLPESEIEHLPKGTEIEFGKEWDGHTADDVLNRLLSLRPKEPATKERKKPGPKPKAESDADKD
103270..103770                     PHAGE_Entero_ST104_NC_005841: Gp4; OG1_RS0100650; phage(gi46358702)                  4.70e-122           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIVTGYVFSDDDNPPSEGDDHGLRSSAISAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAIARAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADSTTPHDEGNG
103730..105148                     PHAGE_Entero_ST104_NC_005841: gp10; OG1_RS0100655; phage(gi46358704)                 0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MPIQQLPMMKGMGKDFKNADYIDYLPINMLATPKEVLNSSGYLRSFPGIAKRNDVNGVSRGVEYNTAQNAVYRVCGGKLYKGEAVVGDVAGSGRVSMAHGRTSQAVGVNGQLIEYRYDGAVKTVSNWPADSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAEYRAESQPDGIIGIGSWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTAEELATGVMETLRFDSHELLIIHLPRHVLVYDASSSQNGPQWCVLKTGLYDDVYRAVDFMYEGNQITCGDKSEALTGQLQFDISSQYGLQQEHLLFTPLFKADNARCFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVIWKRVGRIRRLIGFKLRVITKSPVTLSGCQIRLE
105152..105853                     PHAGE_Entero_ST104_NC_005841: gp26; OG1_RS0100660; phage(gi46358705)                 1.22e-165           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MADPSLNKPVIIQATRLDASILPRNVFSQSYLLYVIAQGADVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEAKIQQLRIDVDDHEIRITANTNAIAALDVRLTTAEGEIVTLQADVSALDGRVTTAEGNISALQVDYVSKTATATQSLASPLNVTTSYSVGGTKVIGARQTGWTAATGAALLGAFNANQAYTVSATYTQSEVSALATGLQQARQRIKALEDAIRTHGLIN
105853..106308                     PHAGE_Entero_ST104_NC_005841: head assembly protein; OG1_RS0100665; phage(gi46358706)     8.72e-111           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MITFIPTRNIDLIETVGNHPDIIAGSNNGDGYDYKPECRYFEVNVHGQFGGIVYYNEIQPLTFDCHAMYLPEIRGFSKEIGLTFWRYILTNTTVQCVTSFAARKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR
106311..107000                     PHAGE_Entero_ST104_NC_005841: gp7; OG1_RS0100670; phage(gi46358707)                  5.72e-156           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MLYAFTLGRKLRGEEPYYPEKGGKGGADKSAKYAAEAQKYAADLQNQQFNTIMNNLKPFTPLADKYIGSLEGLSSLEGQGQALNNYYNSQQYQDFVGQARYQNLAAAEATGGLGSTATSNQLAAIAPTLGQQWLSGQMNNYQNLANIGLGALQGQANAGQTYANNMSQISQQSAALAAANANRPSAMQSAIGGGASGAIAGAGLAKLIGSSTPWGAAIGGGLGLLGSLF
107011..108447                     PHAGE_Entero_ST104_NC_005841: gp20; OG1_RS0100675; phage(gi46358708)                 0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MATWQQGINSGGFLAGIGAQNENAPKASDINATLGLIRENNELARSGANNVALTGLRGLAGVADIYNQEQQQKALNAFNQVHANAWATGDNSGLIKFAQENPAFVAQAQQAFSGLNEQQRNDMGDLAMKANVALSQGPEAYSKFITDNKDRLNRVGANPDWMIQTGVQNPEQLSHMLTTMSLGALGTEKAFAVQDKMVGRQLEGERNQLTARGQDISAATARRGQDISTQNSLRSAGGAVPASVREYQYFNSLSPEQQKNYLRVRGRPDAGGENVVQLADGRTVNVNGKLHGSGASAFYEGTDDNGNMVRVPASAIAAPPTSAASAQNYAMKKDIDAIANADASALDFMTGMTGGAGNPAIGADVRSRLTGKEQRQLYNSAQRIQGRMQNQGVAAARDMGASGINTIAEAKMYFQGMPQVDYSSPEAMQQSIREIQEYTNNYNKQYNVNVGKSQYQQSQPVQESQPASNSNFSSLWGD
108447..110423                     PHAGE_Entero_ST104_NC_005841: gp16; OG1_RS0100680; phage(gi46358709)                 0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MAKAWKDVIASQKYQALAPEQKAQAQEQYFNEVVAPQAGNDAEQAKQAFYAAYPPPTAQQPAKQPHGPAQPQQQGGFMSDLSNAAAETGRGLLQAGVNLANIPASMADAVASAGAWAGQKLGIGDGTYQPSPRVTTQGLEQDFGLQQGALTPQTTEGKIFSEALPYLTPVGAERIAAQASSIAGRVAQGASRLLAENAVGSLAANSERDNPGALATDLGTGVALGGAINQLGRAAGAAYRGIRGTIAPEAQQAIQFANAADVPLHTTDVLQPNSRVGRMAQTTAENIPFAGTSTMRANQQEARSQLVDEFASRFGEYDPSIVIGSLKAKTSGIRKAAGNRLEQVQSAMTGVNIQPTRAIQQIDDEIGKLQKLGQVADTDTISKLQAYRNELAKGDVNLEQLSRLRTQFRMDVRGERTQMPPPAEAAVQRVYRAMTGDIDNSIGQNLGNDTLRRYKQANAVYADEASKLQNTRLKNVLMKGDLTPEVVNNMLFSKNKSEVQNLYRSVGQVGRAQMRNGIIGKAMEKSGGSPDQFLRQVNLMSTQTGIAFKGRDAAYLKGLKNYLESTKRAGQAGVTTPTGQQTIPFILGIGTVTTPALVGVGGGYGLLARMYESEPARNAMLRLANTPRGSTAFEKALAEVERAVNSVAQGAKSDALSE
110562..110855                     PHAGE_Entero_ST104_NC_005841: ORF62; OG1_RS25345; phage(gi46358710)                  8.54e-65            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKKGVMVGCFCVFLAGCATATKTYAPDGREAYTIECSGVGGSWAMCQAKAGDLCGSKGYDLISTGSDQGAIANIDGSTGNAFATNTISRSMYIACKK
complement(110876..111124)         PHAGE_Entero_ST104_NC_005841: Mnt; OG1_RS0100685; phage(gi46358711)                  6.02e-53            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MGRDDPQFNLRLPYELKEKVKQRAKANGRSLNAELVQIVADSLEKPTPVIGYRDDAEREADIVSREIQELVFEKLKDFYRKK
111260..113263                     PHAGE_Entero_ST104_NC_005841: gp9; OG1_RS0100690; phage(gi46358712)                  0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTDITANVVVSNPRPVFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQIAQPLIINAAGKIVYNGQLVKIVTVQGHSMAIYDANGSQVDYIANVLKYDPDQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDVDYHFYNGEKVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSTDGQGLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGPGSGSAWTQLTAISGNTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
complement(113322..114779)         PHAGE_Entero_ST104_NC_005841: O-antigen conversion protein C; OG1_RS0100695; phage(gi46358649)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKFNSNDRIFISIFLGLAIIYTFPLLTHQSFFVDDLGRSLYGGLGWSGNGRPLSDFIFYIINFGTPIIDASPLPLMLGIVILALALSCIREKLFGDDYITASLCFMMILANPFFIENLSYRYDSLTMCMSVAISIISSYVAYQYKPINIIISSILTIAFLSLYQAALNTYAIFLLAFIISDVVKKNSISNITKNTASSVAGLIVGYFAYSYFIAKRLVTGSYNIEHSKIIEINSSLFEGIISNVLSFYRMFSTILNGDNYLIYYSLFFALIISLIVIVLKVIKRDENKKTKFLLVVLILLASMFFIIGPMIFLKSPIYAPRVLIGMGGFMFFCCLCVFYAFEDKQLISRIYFSFILLISTIFSYGAYNAINAQFQLEESIVNRISQDIDHLGFGRDKKNIKFIGTEPYASINENIVIKHPLMRELIPRIINNNWMWSEVLMQRNVFSRNYRLYDKEVKLENGWKKSGNNVYDIGVVGETIVVRFN
complement(114769..115701)         PHAGE_Salmon_ST160_NC_014900: GtrB; OG1_RS0100700; phage(gi318065903)                0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKISLVVPVFNEEDTIPIFYKTVREFNELKEYEIEIVFINDGSKDATESIINKIAASDPLVIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRAVVENIKQMPERNLFMKGVLSWVGGKTDVVKYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKQRPKYILKRKGFKSEI
complement(115698..116060)         PHAGE_Entero_UAB_Phi20_NC_031019: recombination protein; OG1_RS0100705; phage(gi100049)     5.85e-83            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MLKLFAKYTSIGVLNTLIHWGVFAFCVYGMHTHQALANFSGFVIAVSFSFYANARFTFNATTTTLRYMMYVGFMGTLSAVVGWMADQCSLPPLITLITFSAISLVCGFIYSRFIVFRDIR
116349..116394                     attR                                                                                 N/A                 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCA
complement(116657..117436)         PROPHAGE_Escher_MG1655: IS3 transposase B; OG1_RS0100710; phage(gi16128284)          8.78e-160           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006YVWHQRRHQINRRQRFHLVCDNVFREAFSDAKQRYGAPRLTDELRAQGYQFNVKTVAASLRRQGLRAKASRRFRPVSYRKHGLPVSENLLKQDFYASGPNQKWVGDITYLRTGEGWLYLAVVIDLWSRSVIGWSMSSRMTAQLACDALQMALWRRKCPENVIVHTDRGGQYCSTDYQSLLKRHNLRGSMSARGCCYDNACAESFFHTLKVECIHGEDFVSREIMRTAVFNYSECDYNRRRHSACGGLSPEQFENQNLA

#### region 2 ####
343311..343322                     attL                                                                                 N/A                 TCGATGTTAAAA
complement(357835..357960)         PHAGE_Salmon_BTP1_NC_042346: hypothetical protein; OG1_RS25190; phage(gi100018)      9.44e-15            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006VIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKK
complement(357929..358596)         PROPHAGE_Xantho_33913: ISxac3 transposase; OG1_RS26965; phage(gi21231087)            1.66e-13            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSGKRYPEEFKIEAVRQVVERGHSVSSAATHLDITTHSLYARIKKYGSNSSTNKEIKSSQMIRPESADSRKSSGLLTSGTYKKKPQIQLVTATMNDKRSPECASDGRVATSPAMNGSRSNRTDWRAEAVVATVMTMRLQKAFSSYSVNGRKRSTERETKPEAIFLITKCFITVDAGMVRASRCHRLNMKTYIINDSEVSRLSVVIHRYAHLAPAA
complement(358983..360635)         PHAGE_Salmon_epsilon34_NC_011976: GtrC; putative membrane protein; OG1_RS0101880; phage(gi221328637)     4.82e-102           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MRRKMVNNRLKMVIAILIVFSLVYSIGFITPMNSDDYTYALRELSLSSVKMHYLGWSGRVVSDTISTSLLKFFSPHIYNAINSAALTLMVLCWTMIPATLTKSSPSPYVMIFLFFLYFVANPALGQTNFWLVGSANYLWTNMFIAIYILISIYLSNGKKSNLILFVYAISSIFAGCSNENTSLVVVLISVAYFFIMNRNKYLLIGVFGSAIGAGVLLLAPGNLSRASTIQDWYNQPLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISVVLSRNSSSKLMFGSFLFMLGAIAANVAFLASPAMPSRALNGALCFMILSISFVAHSAFTKFNKASIYLSVTTYAMAFLYFIPSYILYYSSIKSISKQTEIREEIIDRAKHNKQDQAIIPDYYFPPVLHAGPSLDTFNSEAMSRYYGIDLKITAPGFFDYSRAFNFKPLNINAKICNNVYIKSLWIYKQQMGIKTFVIFEFNKNPADSLDENTAMFISFKTKDGKIINADVDKKTFQIDGRWLSGRAINGIDSNELESITSGTWDVRTGARTNENITEIIK
complement(360616..361542)         PHAGE_Entero_UAB_Phi20_NC_031019: exonuclease; OG1_RS0101885; phage(gi100048)        0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPLVIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMSREVVENIKQMPERNLFMKGVLSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKKRPKYIIKNEKKNG
complement(361539..361901)         PHAGE_Entero_UAB_Phi20_NC_031019: recombination protein; OG1_RS0101890; phage(gi100049)     1.82e-79            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MLKLFAKYTSIGVLNTLIHWGVFAFCVYGMHTHQALANFSGFVIAVSFSFYANARFTFNASTTTLRYMMYVGFMGTLSAVVGWMADKCSLPPLLTLVTFSAISLICGFIYSKFIVFRDAK
362142..362235                     tRNA                                                                                 N/A                 GCGCCGTAGTAATGGGATAACTTGTTGTTAGCTCAGGTAGTTCCAGGAACATCTAAGCCGTGGGTCGCAGGTTCGAATCCTGCACGGCGCGCCA
complement(362769..363158)         GHKL domain-containing protein; OG1_RS0101900                                        N/A                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006KGVGSLRFEGRACITGDPIMLRRAISNLLSNTMRYTPPGKTITLRIKEADDQIHIIVENPGTPIAPEHLPLLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVTAHRGKISVTSDTRATRFILTFPKHLR
363153..363386                     efflux RND transporter permease subunit; OG1_RS0101905                               N/A                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006TFSAEKLDEALYHGAVLRVRPKAMTVAVIIAGLLPVLWGTGAGSEVMSRITAPLLSLFIIPAAYKLMWLRRHRRLAA
complement(363437..364291)         PHAGE_Bordet_vB_BbrM_PHB04_NC_047861: exonuclease; OG1_RS0101910; phage(gi100048)     4.61e-07            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTVTQGEAQLEMPTGDAMTLTPGKVVILPQNSAHRLRQSGESPTHIVCGSLRLHTTSRYFLTALPEVLCLAPPPHSPASIWINATILLLQQESERHLPGADVLYSQQCATLFTLAVRDWLSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVSATTPLAVLTTLRLQIAAQTLSREVLPVMVIAESVGYASESSFHKAFVREFGCTPGEYRKRVSALGR
365986..365997                     attR                                                                                 N/A                 TCGATGTTAAAA

#### region 3 ####
721474..723420                     PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; OG1_RS0103680; phage(gi371496158)     3.81e-46            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSGSGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLTAAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHDGKIVHNPPAQEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYDDLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNAVQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLAGNMPVIVIGVAEEKPSMYGNSNLLQVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMDSVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFTGILFGWLPARNAARLDPVDALARE
complement(723550..723771)         PHAGE_Vibrio_1.026.O._10N.222.49.C7_NC_049430: portal protein; OG1_RS0103685; phage(gi100069)     8.53e-11            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASVIVPIEAEAVA
724095..724289                     ATP-dependent Clp protease adaptor ClpS; OG1_RS0103690                               N/A                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAV
724341..725038                     PHAGE_Entero_P1_NC_005856: InsA; OG1_RS0103695; phage(gi46401643)                    2.10e-58            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006VASISISCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSRPRAYSRAVMLSALKWTNSGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNPARESCTSASVTLSALSDITIDNIWQGWDGSHCRSQNRWSCMTKSSGIITNTISAA
725049..725192                     ATP-dependent Clp protease adaptor ClpS; OG1_RS0103700                               N/A                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006LPMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
725223..727499                     PROPHAGE_Escher_EDL933: ATP-dependent Clp protease ATP-binding subunit; OG1_RS0103705; phage(gi15800640)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPTGDEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNALTYDFQSAQKHKPEAAH
727691..728149                     PHAGE_Hypert_2_NC_014321: IS element Dka2 orfA; OG1_RS0103710; phage(gi300116744)     2.36e-18            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKLCEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK
complement(728612..729867)         PROPHAGE_Escher_CFT073: transposase insF; OG1_RS26980; phage(gi26249410)             2.53e-39            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MMTEFKRTQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWLRKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAEFFESVINVLKNDYGVSVGKKAARQVLTQSQAPKITVTRACQFLGHSRQAWYQYNTRCNKRQEHHAQVLDFVARTRCRQPRIGTRKLHYLLNMQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKPGPEQVTALEPEQVWVADITYLPLRSGTACLSLVTDACSRKIVGYHVGENLQTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSMTDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERPHLALKYKTPDDVHQAFYRQKTVNLYQD

#### region 4 ####
786985..786996                     attL                                                                                 N/A                 CAGCTTCCGGAA
798842..799539                     PHAGE_Entero_P1_NC_005856: InsA; OG1_RS0104010; phage(gi46401643)                    2.10e-58            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006VASISISCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSRPRAYSRAVMLSALKWTNSGATSVLNHVSAGCFTRMTGYGGRLWRTSSVNALWPHWSVFACCRPLRSWYGRMAGRCMNPARESCTSASVTLSALSDITIDNIWQGWDGSHCRSQNRWSCMTKSSGIITNTISAA
799555..799899                     sodium:alanine symporter family protein; OG1_RS0104015                               N/A                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006GVALILFTSYLGSYIKFRTSINYIFGDKLERIIKWLYFLPPLIAVNMEIPVIWLMADIAVGFLVIPNVIALFLLRKEFISEFNLFRTRTQRDTNSEKTTQITHVNMSKSEGKEE
complement(799977..801179)         PHAGE_Agroba_Atu_ph07_NC_042013: hypothetical protein; OG1_RS0104020; phage(gi100242)     2.96e-49            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGDDLLGIYADAIREQVDAMQHLRLLEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTNDNGKLNIRLTGPWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTALTANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQAHEWFQAHQQISPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASRYQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQLSFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFDLPQVRKAS
complement(801374..802666)         PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage integrase; OG1_RS0104025; phage(gi169257268)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSPNLARFGQDRKEITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSSTVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALFRYAPSLPQSMVAAQ
complement(802711..802959)         PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage excisionase; OG1_RS0104030; phage(gi169257269)     2.25e-55            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYLHISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT
complement(803000..803239)         PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; OG1_RS0104035; phage(gi169257270)     1.91e-52            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MRLINRSKQSPLGRRACDVALAAHHEKFGDYGRQKHVTNYTVVVDGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN
complement(803282..804439)         PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; OG1_RS0104040; phage(gi169257271)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MCAALKRCAYRHKGKIMENTNIVTTEQQAPNTISASNAIFNVQALGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYAVAQKTHLVNGVLGYEAQLVNAVIASSSAIHGRFHYRYGGDWERCTRTQEITRDKNGKNGKYTVTERVRGWTDEDEIGLFVQVGAILRGESEITWGEPLYLSGVVTRNSPLWVSNPKQQIAYLGVKYWARLYCPEVILGVYSPDEVEQREEREINPAPVQRMSVQEITSEVSTRTSAQESAANVDAVADDLRERIDTASSVDQAKAIRADIESQKALLGTALFTELKNKAVKRYYQVDAQNKVEAVINSIPNPGEPEAAEMFAKAESTLGAAKRHLGDELHDKYRVTLDDMKPEYIG
complement(804402..807330)         PHAGE_Phage_Gifsy_2_NC_010393: putatitive bacteriophage exodeoxyribonuclease VIII; OG1_RS0104045; phage(gi169257272)     2.61e-147           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKSGAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAAAAARQHIVDGVDTETGEVLEDHTENFGNESNSPAQATAPAPELTVVATMPLRHRVLAQYIGEGEYLYHVDASQKKEILRLEMDTDNSYVQNLLLAAENVEAFKKAIEHDIHKIVNAVKKSIPCRWKNSTGDCYPVPNMVRDGAYRSRFARGVGERQPCIGYSTHKRRQRWRWQDPPLRTHSRYSGRRDCNGHFAYGLYLATWQRLPSRKRNRKEKGKSVQRMVRSTSRNARYPGLFPRRYFRADPKRTPVLSLPRTPSGVYQRQLNGDSREPHRGSSHGCPTHSGKRRGRRSQPTACRRARICGRHQRPERPKMGEDRDKPADHRTTGKCWQRYFRRVRFNAELINSWHRNESGDHQQCAGSKSQKTGWCGAGRRRRSGYWRSSYRREPESGDAPEQRFCEPITGATKRTGIATRRARSSLAGILRAGPLRCTKRGLPRRQRDQLNSGERCSRVADVLRASRREDYRQRALSSAYGQPGTCSGSTAGKPRSGVQRRAGDPGCFHHHRHPARVHRRAQRQPASAAECRYQSAAGRVQRHPAVADAAWSFGRNLCIVAASRRIPAHKRHQTYSHGDESLHQRVQRHPARAGNQRQPRAAGATGNNQPPGRSGSAKIVAVESLWHEGRSDSGREISQPGSGIRRRIAGCVAGEHRRESAGHPPTAQHRAEHSESPAGAPDRRQIADSPKPRCRGLFWDGNRVGSSGTPPARYGRPAHWRRPENYQHVEHQAGRPACEVAPGNHRSGLSPERGHVLRNCGAGPVFLDFRQQRRELPLGRHHGVYRVAGTWHAGIPQNNARDSKRLRHWMVSAYHRRLHRRTERFCAPPSVARTGIA
complement(807457..807756)         PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; OG1_RS0104050; phage(gi169257273)     8.96e-52            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKNSPLIWRGFLHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCENLDGGYVLGKFDSPHCAVKAISLLTVKVSDGEQAGFGNYRSYKLDYSEKFYQTIH
complement(807778..807936)         PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; OG1_RS0104055; phage(gi169257274)     2.06e-29            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MLKQCGYCRKSIDEGKEVKNTLLYLNGSQLARKEKEYCSRQCAEYDQMAHES
complement(807929..808189)         PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; OG1_RS26990; phage(gi169257275)     2.31e-19            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MLQDRTFSCTFCFTNRTFGFIVSFIDNKRIVVRCKTFRWPAIRQTRVRMIDFARKPARQQAVPLNRIEVLIRRLCYLLAQKGDPDA
complement(808239..808649)         PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; repressor; Lambda gpCI analog; OG1_RS0104065; phage(gi169257276)     5.20e-96            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MNKNLHPIFAKRIQQVLDENGWSMADLSRRVMLSHTSVRKWASGTSVASGERLKRLSAVTGRPEYWFFMEPGDESEGERAEPKPRVLDEKEETLLSLFNQLPEAEKLRVILHTKAVLQEMDLLKNNVFDLINDLKK
808769..809008                     PHAGE_Phage_Gifsy_2_NC_010393: putative bacteriophage regulatory protein; Lambda gpCro analog; OG1_RS0104070; phage(gi169257277)     2.12e-53            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MDNQLKIKISNHMTQMSIGEHFGISSQAVGKWLRKGVIPPRRILPLCEILEWKVTPHEIDPAAYPNPTDGLPSQEASAK
808974..809348                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage transcriptional activator; Lambda gpCII analog; OG1_RS0104075; phage(gi169257278)     6.23e-72            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
809433..810416                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; Lambda gpo homolog; OG1_RS0104080; phage(gi169257279)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSMSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCIVELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIIILRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYPRKGGRASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPFNPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDEGHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG
810419..811168                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage DNA replication protein; OG1_RS0104085; phage(gi169257280)     0.0                 SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRSEELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGFASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWESYRKNVSHLRIVK
811179..811526                     PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; OG1_RS0104090; phage(gi169257281)     1.01e-79            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MARPKTQSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAEKYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVYGASKMSINKGGAQ
811523..811834                     PHAGE_Phage_Gifsy_2_NC_010393: conserved hypothetical bacteriophage protein; OG1_RS0104095; phage(gi169257282)     7.84e-70            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVTLAHTVEKRDAEFIAAANPATVLALLDVLYEFGEDEVAISEYVTNLEDALRVAAAPQQEE
811912..812202                     PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; OG1_RS0104100; phage(gi169257283)     8.24e-60            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MNYEDKLMYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKVPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD
812494..812727                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage damage-inducible protein DinI; OG1_RS0104105; phage(gi169257284)     6.75e-51            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MRIELVISRAKQLPEGAVPALEKELITRLQNQYENCNLTIRRGSQDGLSIVGAADGDKKRIQSILQETWESADDWFY
812527..812538                     attR                                                                                 N/A                 CAGCTTCCGGAA
812839..813060                     PHAGE_Phage_Gifsy_2_NC_010393: hypothetical bacteriophage protein; OG1_RS25565; phage(gi169257285)     4.63e-46            SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MAEGVLSDLADNLRVTITDAKGIELLSFRLASGDRYILSTQNGSVTNRKLSRDDLYWSKDTIMEVVREMGSNN
813143..813657                     PHAGE_Phage_Gifsy_2_NC_010393: hypothetical protein; OG1_RS0104110; phage(gi169257286)     1.05e-124           SalmonellaentericasubspentericaserovarTyphimuriumstrST166006MAHELQLIKQSSGILIPATPETSEILQSKIKLGAVLVAEFRQVRNPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGYAKFLAAYGGNESALLDAAEQYLEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEVEFQQLYKSALDV
