gi|00000000|ref|NZ_AJXA01000100.1|  Salmonella enterica subsp. enterica serovar Typhi str. ST0208 130995, gc%: 50.86%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
56795..56806                       attL                                                                                 N/A                 ATTTTAAAAATT
57076..58225                       PROPHAGE_Escher_MG1655: IS3 transposase B; Y3W_RS0114675; phage(gi16128284)          3.79e-18            SalmonellaentericasubspentericaserovarTyphistrST0208MTKAASTTKKPCKQHTPEFRDEALKLANALGWLRLPASLTCMNRSSTTGEENSKISSLLLNANRRCPQRSSVSINWQNGMRNLFSRRSRHTSRNANEVCLHRKTSGVQYQSHVPCTSGCPWLVRLASASSSDKPASAVPPCLRRPGGIQRKQRYGAPRLTDELRAQGRVYTVAASLRRQALRAKASRKISPVSYREHGLPVQRICSRTFTSVARIRNGWVTSCIFAPVKAGFIWPWLLTCGRSQPLAGLCPRGRHSLPAMHYTRCGGVNDRKSHHIYRQRQVLFSGLPELTETASAGQDERQRLLLRCLCGKLLPHAEGGMYAWRGLCQPGNNAGSSVLYVRLQSLASPQCLWRSQSGTIKPEPRLA
complement(58257..58397)           PROPHAGE_Escher_CFT073: putative prophage integrase; Y3W_RS26475; phage(gi26250313)     9.12e-19            SalmonellaentericasubspentericaserovarTyphistrST0208MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWQLQYRFGGK
58592..58605                       attL                                                                                 N/A                 CGAAGGCCGGACTC
complement(59134..61467)           PHAGE_Entero_P4_NC_001609: DNA primase; Y3W_RS0114690; phage(gi9627512)              0.0                 SalmonellaentericasubspentericaserovarTyphistrST0208MKMNVTETVKQACGHWSRILPALGVKVIKNRHQACPVCGGSDRFRFDDKEGRGTWFCNQCGAGDGLKLVEKVFGVSASEAAGKVDAVTGNLPPVALEVIAAAEAETEADRKAAAALAVKLMEKTRPASGNAYLTRKGFPGHECVMLTATHKTGGVTFRAGDMVVPLYDNAGALVNVQLINSDGLKRTLKGGAVKGACHTIEGKKQAGKRLWVAEGYATALTVHHLTGETVMVALSSVNLLSLASLARQKHPACQIVLAADRDLNGNGQSKAAAAADACEGIVALPPVFGDWNDAFMQKGEEATRKAIYDAIRPPADSPFTTMSEAEFTAMSTSEKAMRVHEHYGEALAVDANGQLLSRYEAGIWKIIPPSDFARDVAGLFQRLRAPFSSGKIASVVETLKLIIPQQDAPARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAGGKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLESPRERAALIGFSLIRLPDQEKWSGDGAGLKAITGGDAVSVDPKYKDAYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAIIVRQLMQKFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTNGMFMGNASIIPRNYRKYLYHAYLAYMEANGYRNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTNLSLKEESYGDWLPKCEEPAAT
complement(61482..61802)           PHAGE_Entero_P4_NC_001609: hypothetical protein; Y3W_RS0114695; phage(gi9627513)     1.56e-66            SalmonellaentericasubspentericaserovarTyphistrST0208MKNPLPPVLRAALYRRAVACAWLTLCERQHRYPHLTLDALESAIAAELEGFYLRQHGEEKGRQIACALLEDLIEAGPLKAAPSLSFLGLTVMDELCARHITAPVLH
complement(61799..62026)           hypothetical protein; Y3W_RS0114700                                                  N/A                 SalmonellaentericasubspentericaserovarTyphistrST0208MRHTTITARDLECLEHMRNVGQLVNELMQVQDCATVRRDPVQQSQLTSVIYLMTAQLDGVVERCNQRWLTGEGNV
complement(62023..62574)           PHAGE_Entero_P4_NC_001609: putative CI repressor; Y3W_RS24655; phage(gi9627516)      1.80e-47            SalmonellaentericasubspentericaserovarTyphistrST0208MMMTIQQTAPFSGLLLFIVSRYSFPAVAKSAAGRGNPSNLTATPDAPCVFFCVYALVHLLLAQWFHDLCSYRVMVAQAGPTSVGPVSVRAGISTPVWATTTERGNSGGSITCYLTEVALMATILTPSYPQFVFVFAAVRRADRKPRICMLRTVAGDEQAARLSLVRDYVLSFAGRLPVAEVRA
complement(62507..62830)           PHAGE_Entero_P4_NC_001609: transcriptional regulator; Y3W_RS0114715; phage(gi9627517)     4.20e-36            SalmonellaentericasubspentericaserovarTyphistrST0208MHTAFSSPSSAPAAPLMPVSDTVHERFIRLPEVMHLCGLSRSTIYDLISREAFPKQISLGGKNVAWAQSEITAWMTDRIATGVMTHDDDHSANSPFFWLASFYRFQV
63370..64113                       PHAGE_Entero_P4_NC_001609: head size determination protein sid; Y3W_RS0114720; phage(gi9627518)     6.31e-20            SalmonellaentericasubspentericaserovarTyphistrST0208MKPELIIKSMQTVISKQDEGAEQRIAGALVALNEAKDAHTASMGKLSDIEASIQRCEQERQTALSESAQAEQDWRSRFRTLRGNLTPELKAEHSKRIASRELADEFTGLITELEKDKSLAMLGACSSGTAYISAHEKAFTTYANSEWKKALAGISPALLRAFLLRIRSLEMSGETSLRATVTRELGDALNMQSALYHFDMEQEPVLSVTGMNRPVITGVDMALLRSPARRMKLAAELAAKDHEQAEG
64117..64356                       PHAGE_Klebsi_ST147_VIM1phi7.1_NC_049451: hypothetical protein; Y3W_RS0114725; phage(gi100036)     1.10e-19            SalmonellaentericasubspentericaserovarTyphistrST0208MFHCPFCKKTAHVRTSRYLSENVKQRYHQCTNIECSATFRTIESVDGVIRAAPEKPDPAPVTPPPPRKVQGCYSSPFRH
64372..64938                       PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; Y3W_RS0114730; phage(gi9627520)     1.18e-78            SalmonellaentericasubspentericaserovarTyphistrST0208MTTVTIQQAFEACQTNKNTWLKRKAELADLEREYREQLLAGDEQIPRRMQDLRDNIDVKKWEINQAAGRYIRSHEEVQHISIRNRLHDFMQQHGAELAATLAPELMGYHEQIPAVKQSAMQHSVDYLREALSVWLAAGEKINYSVQDNDMLTTIGFRPDAASRDDNREKFTPAQNLIYTRRRAELATR
65214..66377                       PHAGE_Plankt_PaV_LD_NC_016564: protein phosphatase; Y3W_RS0114735; phage(gi371496161)     9.86e-38            SalmonellaentericasubspentericaserovarTyphistrST0208MFTERLARWLARSSAKSGINRPEDLNAVLSTDIGLVRAENQDLIAAIRVNTPSNVGNPFFAMALLDGMGGMQDGKQCATIALSTLFYSLIKFRSDPPESRLLKATLEANSVVYDYAKGHGGSTLSAVIIENGSAPVIVNVGDSRIYSFSLDCGLTAISSDDSLEALGGRGRGLLQFIGMGESIKPHINILDKNHKNIILTSDGTHFISHSAFEELLSHSSDFSTSAQRIAQYVQWCGAKDNASFGIINCNDIENSLNSHKDIGVELWDPHGNLHIMWMKNYPAAQNYFSQNIVDDQDKEPSPIIDDDGFENKKTLNNPSTKNLELDSETPQRELFSNESPEKSQDPSITSKAIKQRKNKDKKKAIEKIKKDQSVMINIKDEENKNED
66367..67425                       PHAGE_Plankt_PaV_LD_NC_016564: protein kinase; Y3W_RS0114740; phage(gi371496162)     2.49e-64            SalmonellaentericasubspentericaserovarTyphistrST0208MKINHVLPERYSLKSTELGGGMGDILICKDNHLDRDVIVKLLKDGEEERRLLDEQKALLKLRSKHVVQLYDLIDITVSEKTKKGLVLEYINGVDLNYNPSESHPEKLKKLWQIACGLSDIHSAKVIHRDIKPNNIRVDENKIVKILDFGLARTSGTEAFTHSVIGTLGYMAPELWKRKNISFDQKIDVYAYGVLVLDLFGIEKPDELYEHPPAAITNIPELGKILPKDLARTFISCLSHDKYARPAMSSVRDQIAKYLLKDRHRALFVLNGKKYEINAKNKSVTITWGTSGSMEIVYDGFDFKVGNFSGSATINNQQVITNKVFPSCSVITLINEKSRSFVTFDISRPEVIS
67422..68498                       PHAGE_Plankt_PaV_LD_NC_016564: protein kinase; Y3W_RS0114745; phage(gi371496162)     1.74e-13            SalmonellaentericasubspentericaserovarTyphistrST0208MIEVGRIIAERYKILSYVGKGGMQDVYKVLDLKLDLDLALKTPLPGLESKRFLKSAKIAAKINHHNIAKTFDYVEDNGNIFLAEEFVEGENLEEKLRHFDFLDPHYGACILHNLAKGIMASHKADVIHRDLKPSNVMVSGGVQISNLKITDFGIATLTQELFDEAAASGDLTRSTSGTIKGALPFMSPELMFGKKGKPIEASTDIWPLGAMMFKLLTGDYPFGVYLDAAVNVKTKNRMEWPTFMTANPQYQSLSQDLQKIVDKCLSYDSDKRPTAETLVKACETLCYLSEERHVGRVNNLIQGGISGFIDGTPSNSFFSMESVYGSRYPNTSTRNTVCYSTFDGHPWPRAHPVILWKD
complement(68561..69826)           PHAGE_Entero_P4_NC_001609: integrase; Y3W_RS0114750; phage(gi9627511)                0.0                 SalmonellaentericasubspentericaserovarTyphistrST0208MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNIK
69996..70009                       attR                                                                                 N/A                 CGAAGGCCGGACTC
82080..82091                       attR                                                                                 N/A                 ATTTTAAAAATT
