gi|00000000|ref|NZ_AKZO01000187.1|  Salmonella enterica subsp. enterica serovar Typhi str. CR0044 237424, gc%: 51.10%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
177189..177200                     attL                                                                                 N/A                 ATTTTAAAAATT
177470..178619                     PROPHAGE_Escher_MG1655: IS3 transposase B; Y3Y_RS0123590; phage(gi16128284)          3.79e-18            SalmonellaentericasubspentericaserovarTyphistrCR0044MTKAASTTKKPCKQHTPEFRDEALKLANALGWLRLPASLTCMNRSSTTGEENSKISSLLLNANRRCPQRSSVSINWQNGMRNLFSRRSRHTSRNANEVCLHRKTSGVQYQSHVPCTSGCPWLVRLASASSSDKPASAVPPCLRRPGGIQRKQRYGAPRLTDELRAQGRVYTVAASLRRQALRAKASRKISPVSYREHGLPVQRICSRTFTSVARIRNGWVTSCIFAPVKAGFIWPWLLTCGRSQPLAGLCPRGRHSLPAMHYTRCGGVNDRKSHHIYRQRQVLFSGLPELTETASAGQDERQRLLLRCLCGKLLPHAEGGMYAWRGLCQPGNNAGSSVLYVRLQSLASPQCLWRSQSGTIKPEPRLA
complement(178651..178791)         PROPHAGE_Escher_CFT073: putative prophage integrase; Y3Y_RS26520; phage(gi26250313)     9.12e-19            SalmonellaentericasubspentericaserovarTyphistrCR0044MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWQLQYRFGGK
178986..178999                     attL                                                                                 N/A                 CGAAGGCCGGACTC
complement(179528..181860)         PHAGE_Entero_P4_NC_001609: DNA primase; Y3Y_RS0123605; phage(gi9627512)              3.64e-90            SalmonellaentericasubspentericaserovarTyphistrCR0044MKMNVTETVKQACGHWSRILPALGVKVIKNRHQACPVCGGSDRFRFDDKEGRGTWFCNQCGAGDGLKLVEKVFGVSASEAAGKVDAVTGNLPPVALEVIAAAEAETEADRKAAAALAVKLMEKTRPASGNAYLTRKGFPGHECVMLTATHKTGGVTFRAGDMVVPLYDNAGALVNVQLINSDGLKRTLKGGAVKGACHTIEGKNRRENACGLRRAMRPRSPYITPGKPSWWRCPPTYFLWRALPVRNTRPVRLSSPPTVTLTATARVKPLRPQTPARALSPCRRCSVTGMMRLCRKVKRPRGKPFMTPSGLRLTALSLPAKRNLPPAPVKRQCGCMNITAKRWPWMRTASSCPDMRQEYGKSFPRRILPATWPGCFSVCAPRSRRGKLPQWWRPNLFRSRTHRRAVLVFVTGYSIPPPALSARTTNRTGCARYVMLISPHRWRAKRWKPTPLISGAGLTALPVANRKNAMFWPRCLWFWRTVTTGSSFSKSPAPAGAEKVFWPKLRPCLPGKITPRRPPSKRWNHPANALRLASLYDCLTRKNGAVTGQDSRPSPAGMRSPLTRNTRMRTPPIFQRFWPTITRCALPTAAVVYRAAGLFTSRSRLPRRNATRSSGIKLRASWPSLCVSLCRSSATRQRAHCSSHSRTPTRHSVSSAMLTRRLIFAAIWKCSRRPTGCLWVMPVLSRVITVNIFITRIWPIWRLTGTGTCSAKCSGWGCPCKNTAIMRSGTQSRGYKPICRKRKATATGCRNARNPQQHAA
complement(181875..182195)         PHAGE_Entero_P4_NC_001609: hypothetical protein; Y3Y_RS0123610; phage(gi9627513)     1.56e-66            SalmonellaentericasubspentericaserovarTyphistrCR0044MKNPLPPVLRAALYRRAVACAWLTLCERQHRYPHLTLDALESAIAAELEGFYLRQHGEEKGRQIACALLEDLIEAGPLKAAPSLSFLGLTVMDELCARHITAPVLH
complement(182192..182419)         hypothetical protein; Y3Y_RS0123615                                                  N/A                 SalmonellaentericasubspentericaserovarTyphistrCR0044MRHTTITARDLECLEHMRNVGQLVNELMQVQDCATVRRDPVQQSQLTSVIYLMTAQLDGVVERCNQRWLTGEGNV
complement(182416..182967)         PHAGE_Entero_P4_NC_001609: putative CI repressor; Y3Y_RS24590; phage(gi9627516)      1.80e-47            SalmonellaentericasubspentericaserovarTyphistrCR0044MMMTIQQTAPFSGLLLFIVSRYSFPAVAKSAAGRGNPSNLTATPDAPCVFFCVYALVHLLLAQWFHDLCSYRVMVAQAGPTSVGPVSVRAGISTPVWATTTERGNSGGSITCYLTEVALMATILTPSYPQFVFVFAAVRRADRKPRICMLRTVAGDEQAARLSLVRDYVLSFAGRLPVAEVRA
complement(182900..183223)         PHAGE_Entero_P4_NC_001609: transcriptional regulator; Y3Y_RS0123630; phage(gi9627517)     4.20e-36            SalmonellaentericasubspentericaserovarTyphistrCR0044MHTAFSSPSSAPAAPLMPVSDTVHERFIRLPEVMHLCGLSRSTIYDLISREAFPKQISLGGKNVAWAQSEITAWMTDRIATGVMTHDDDHSANSPFFWLASFYRFQV
183763..184506                     PHAGE_Entero_P4_NC_001609: head size determination protein sid; Y3Y_RS0123635; phage(gi9627518)     6.31e-20            SalmonellaentericasubspentericaserovarTyphistrCR0044MKPELIIKSMQTVISKQDEGAEQRIAGALVALNEAKDAHTASMGKLSDIEASIQRCEQERQTALSESAQAEQDWRSRFRTLRGNLTPELKAEHSKRIASRELADEFTGLITELEKDKSLAMLGACSSGTAYISAHEKAFTTYANSEWKKALAGISPALLRAFLLRIRSLEMSGETSLRATVTRELGDALNMQSALYHFDMEQEPVLSVTGMNRPVITGVDMALLRSPARRMKLAAELAAKDHEQAEG
184510..184749                     PHAGE_Klebsi_ST147_VIM1phi7.1_NC_049451: hypothetical protein; Y3Y_RS0123640; phage(gi100036)     1.10e-19            SalmonellaentericasubspentericaserovarTyphistrCR0044MFHCPFCKKTAHVRTSRYLSENVKQRYHQCTNIECSATFRTIESVDGVIRAAPEKPDPAPVTPPPPRKVQGCYSSPFRH
184765..185331                     PHAGE_Entero_P4_NC_001609: amber mutation-suppressing protein; Y3Y_RS0123645; phage(gi9627520)     1.18e-78            SalmonellaentericasubspentericaserovarTyphistrCR0044MTTVTIQQAFEACQTNKNTWLKRKAELADLEREYREQLLAGDEQIPRRMQDLRDNIDVKKWEINQAAGRYIRSHEEVQHISIRNRLHDFMQQHGAELAATLAPELMGYHEQIPAVKQSAMQHSVDYLREALSVWLAAGEKINYSVQDNDMLTTIGFRPDAASRDDNREKFTPAQNLIYTRRRAELATR
185607..186770                     PHAGE_Plankt_PaV_LD_NC_016564: protein phosphatase; Y3Y_RS0123650; phage(gi371496161)     9.86e-38            SalmonellaentericasubspentericaserovarTyphistrCR0044MFTERLARWLARSSAKSGINRPEDLNAVLSTDIGLVRAENQDLIAAIRVNTPSNVGNPFFAMALLDGMGGMQDGKQCATIALSTLFYSLIKFRSDPPESRLLKATLEANSVVYDYAKGHGGSTLSAVIIENGSAPVIVNVGDSRIYSFSLDCGLTAISSDDSLEALGGRGRGLLQFIGMGESIKPHINILDKNHKNIILTSDGTHFISHSAFEELLSHSSDFSTSAQRIAQYVQWCGAKDNASFGIINCNDIENSLNSHKDIGVELWDPHGNLHIMWMKNYPAAQNYFSQNIVDDQDKEPSPIIDDDGFENKKTLNNPSTKNLELDSETPQRELFSNESPEKSQDPSITSKAIKQRKNKDKKKAIEKIKKDQSVMINIKDEENKNED
186760..187818                     PHAGE_Plankt_PaV_LD_NC_016564: protein kinase; Y3Y_RS0123655; phage(gi371496162)     2.49e-64            SalmonellaentericasubspentericaserovarTyphistrCR0044MKINHVLPERYSLKSTELGGGMGDILICKDNHLDRDVIVKLLKDGEEERRLLDEQKALLKLRSKHVVQLYDLIDITVSEKTKKGLVLEYINGVDLNYNPSESHPEKLKKLWQIACGLSDIHSAKVIHRDIKPNNIRVDENKIVKILDFGLARTSGTEAFTHSVIGTLGYMAPELWKRKNISFDQKIDVYAYGVLVLDLFGIEKPDELYEHPPAAITNIPELGKILPKDLARTFISCLSHDKYARPAMSSVRDQIAKYLLKDRHRALFVLNGKKYEINAKNKSVTITWGTSGSMEIVYDGFDFKVGNFSGSATINNQQVITNKVFPSCSVITLINEKSRSFVTFDISRPEVIS
187815..188891                     PHAGE_Plankt_PaV_LD_NC_016564: protein kinase; Y3Y_RS0123660; phage(gi371496162)     1.74e-13            SalmonellaentericasubspentericaserovarTyphistrCR0044MIEVGRIIAERYKILSYVGKGGMQDVYKVLDLKLDLDLALKTPLPGLESKRFLKSAKIAAKINHHNIAKTFDYVEDNGNIFLAEEFVEGENLEEKLRHFDFLDPHYGACILHNLAKGIMASHKADVIHRDLKPSNVMVSGGVQISNLKITDFGIATLTQELFDEAAASGDLTRSTSGTIKGALPFMSPELMFGKKGKPIEASTDIWPLGAMMFKLLTGDYPFGVYLDAAVNVKTKNRMEWPTFMTANPQYQSLSQDLQKIVDKCLSYDSDKRPTAETLVKACETLCYLSEERHVGRVNNLIQGGISGFIDGTPSNSFFSMESVYGSRYPNTSTRNTVCYSTFDGHPWPRAHPVILWKD
complement(188954..190219)         PHAGE_Entero_P4_NC_001609: integrase; Y3Y_RS0123665; phage(gi9627511)                0.0                 SalmonellaentericasubspentericaserovarTyphistrCR0044MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCNIK
190389..190402                     attR                                                                                 N/A                 CGAAGGCCGGACTC
202473..202484                     attR                                                                                 N/A                 ATTTTAAAAATT
