gi|00000000|ref|NZ_ALRO00000000.1|  Streptococcus agalactiae STIR-CD-21, whole genome shotgun 2145693, gc%: 35.57%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
1187802..1187813                   attL                                                                                 N/A                 AGCTTTAAATCA
complement(1188595..1188981)       PHAGE_Strept_315.5_NC_004588: hypothetical protein; SAG0125_04715; phage(gi28876412)     1.74e-18            StreptococcusagalactiaeSTIRCD21MSKKNAIRKLKEFHRWQRIANSLNLTYNERYQFDIDYHPTRRKHLEISRECALEELDAIKHAINQLSKIEYRKILIECYLIGEKNLKKPQQDIIAELNRSQSWYYEIKKRALLEFVELYRDGILNKIN
complement(1188956..1189318)       hypothetical protein; SAG0125_04720                                                  N/A                 StreptococcusagalactiaeSTIRCD21MSAKEQLKELKPLFALITLFEEQRDKDIKLMNAFRNPELLNGIEKGTAQQLLYLAKERDKRLAMIATLQDERQIAVIKARYVDDLSWDEIPDKLGYSRNTVFKLHREALEVLDEQEERYS
complement(1189722..1190210)       hypothetical protein; SAG0125_04725                                                  N/A                 StreptococcusagalactiaeSTIRCD21MLELAIESIIKPMKAQRKTRVTGTINDQSVTIDLNNLVIHYNHQNLLLETIPGTYGGKRYFFLCPKCERRCRKLFKIYNIFACGSCQKVHQATLNRSKTDCQYYWRLAFRECLKVDPKARYKHGYYSHDDFPKRPKYMRIAKYLYHWKRFHYYMDKGDRHWL
complement(1190284..1190829)       hypothetical protein; SAG0125_04730                                                  N/A                 StreptococcusagalactiaeSTIRCD21MTLKTFSDTAQTFTFTYDFEDIDTAKVASHAVLGYMTGTYHAPVIEVTIKGKGQLVLEYVEDKKLSKVFKRICGSFKDYYNQPEDMTDEELDDMAQENELIKEVEELEHQRVVPLFEITQEEANKQDTLMAFISDHDQLAEHLSMNYQEMNQDDLGAILETISQAFNHLYDMVVEGQLVVK
complement(1191194..1192696)       PHAGE_Lactoc_bIL310_NC_002669: helicase; SAG0125_04735; phage(gi13095886)            4.46e-71            StreptococcusagalactiaeSTIRCD21MKSLESEILEARENEQPPKTMRELENRIFQAGEQWREEHTETKINESTGDVTEKVAMPQVFTVAKMLSEIITFTFISKSNVPDYSLLYIYDLDEGIYTASNDLFNRFCKTFDVRIKPREWPQIKLMVRTLTRIKKPLESAYFIPVQNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACNDSELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNVSALKPAQFAEKHNLETLVGKVCNIGDEAPNEYLKNPSDLMSISSGDTVLVNPKGRPAFEATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNDFLGKKKVLEYALYKAINQESFTHFIEPQAVKGLLEEYQEDNDYLLSWVKNEYMEKGWHELEVVPVFIVTRSLKHYAEDMGIAKPNVYGAGKETIRHLQQLTPNKYQLKRARVKLEDYDKLDPLEFERKKLGNVNHSITKKE
complement(1192716..1193585)       PHAGE_Strept_315.2_NC_004585: hypothetical protein; SAG0125_04740; phage(gi28876243)     5.88e-15            StreptococcusagalactiaeSTIRCD21MAIYEARGFSSYLYPYKGPLEPFDYIAQFKPLKPPEDIDIEEYKRTQAPYCLSGKVTAEKNGSYKRNNASLVYRDLIFLDYDEIEGPAQGFIEAVSRALFGFSYILYSTIKHTPESPRFRLVVKPGDVMNEETYKQVVKEIADKIGLPFDMASLTWSQLQGLPVTTGDPADYQKIVEHGLDYPVPKSNKNRTSGQGVKPQTYTPRPSGQRSITMRVIDTLFNGFGDEGGRNVALTKFVGLLFNKWVDCDIETAYELTKIANSVTANPLPERELDRTFESIARAEFRKRG
complement(1193586..1193858)       PHAGE_Lactoc_bIL310_NC_002669: hypothetical protein; SAG0125_04745; phage(gi13095880)     3.13e-08            StreptococcusagalactiaeSTIRCD21MNVFSQDYEAKLLEQNLTAFNRFLEAYQKPKPRVLGLITAEQVKEELNIKGKTLKRWEKAGLRRYQPPLEDTRKHYYKVSDILIFLGVNV
complement(1193861..1194190)       PHAGE_Strept_M102AD_NC_028984: hypothetical protein; SAG0125_04750; phage(gi971763197)     1.18e-07            StreptococcusagalactiaeSTIRCD21MTLPENYRRVLKLIKVGADNPITGAEIGLILKLEERSVQSIISSLITRYNVPIIGIRHGFNRGYFIPANKEELLDGAKAFYNQVQKEQERLSVLLNADLTSYKKLLKGG
complement(1194202..1194396)       hypothetical protein; SAG0125_04755                                                  N/A                 StreptococcusagalactiaeSTIRCD21MIQELNLTPTQTLILFIVLGLIGLLLSRSKPLIEIDLPEDIQSPKPRQNANYGAYIQSQNHYYN
complement(1194393..1194725)       hypothetical protein; SAG0125_04760                                                  N/A                 StreptococcusagalactiaeSTIRCD21MKYRVETNPFSKDRYTPEQLEMFKNRQLSKNKAEAYFTRLYNQHIAWVIIANVMTEYVIKFRKSATSFEEAWDALDYQRTTEIVFRAVNGLPCSEKDTGELETYLSEVSA
complement(1194814..1195266)       hypothetical protein; SAG0125_04765                                                  N/A                 StreptococcusagalactiaeSTIRCD21MLKNQDNMIKKKRNPRVLFRNVAYKLSEIEGKTLTEIASFLGFGNSEVCRSALYKWKRKKWLKFDLKNGHYRNVEVLHEVTLEKMANKELKEQGLIYKANIYYEQVVSTSEIIEDIKTKTQDRIKAIHLQQKALERIPSELFAELYTNMN
complement(1195407..1195580)       hypothetical protein; SAG0125_04770                                                  N/A                 StreptococcusagalactiaeSTIRCD21MSPKMGRPVKGTAKRDKRLEVRLTADEYNTIQETADKNGLSKADLIVKAVNSYESEK
complement(1195682..1196320)       PHAGE_Lactoc_bIL310_NC_002669: anti-repressor; SAG0125_04775; phage(gi13095876)      2.39e-06            StreptococcusagalactiaeSTIRCD21MNIIKQVKSSFGELEIDFYLDRNRNIFVTIEQLAQGFGYKSRNAIEKMIERQPYLKEKRFSVTDKLSATDGKQYETRLFNKRGIFEIGMLSKTEKGKIFRQWIYDHIEELERENANFKLIRELEKSNHKELTQAIKDWEHFNQWSYKAISDLLLKSVTGQTAKQLKQSRVGYEIALDCLSADELTRYRKLEQKVIVLLELNAEYNDIKKLVL
complement(1196556..1197158)       PHAGE_Bacter_Rani_NC_029084: antirepressor; SAG0125_04780; phage(gi985759370)        1.03e-19            StreptococcusagalactiaeSTIRCD21MRTETWNGYTIRFVEHQGEWWAVLADICHALDLKPKRVKERLVDEVVSTDHVADSLGRQQEMLIVNEFGIYDTIFSSRKPEAKSFKFWVFETIKQLRQATGLEGFEVFRMLDKEHQKEAMARLTNSLDRVSKKDLIKANTITNKAVSNKFGYSKMVKKSEMTQDMLVAREMILDDTVELMGIKEKFGLNISVSESIYNKN
complement(1197182..1197382)       PHAGE_Lactoc_bIL311_NC_002670: ps3 protein 14-like transcriptional regulator; SAG0125_04785; phage(gi19343481)     8.62e-16            StreptococcusagalactiaeSTIRCD21MDKLRGYRVMLGLTQKDMSDKLNISLQSYNNKETGKSAFNDKERLAIKSMVSEIKPDITIDELFYS
1197588..1198202                   PHAGE_Strept_2972_NC_007019: DNA binding protein; SAG0125_04790; phage(gi66391801)     8.04e-21            StreptococcusagalactiaeSTIRCD21MNRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLLGYAPNKKIDFQLNLDGTTLHLTKEQFLALENTSKSIKKIKNTINESVKQEEYIKNASKYYDFEKVSRRLTDRLFEIHTDLIELLMMLDHFPSGELSKSQQEAIFKFYKQLDYFVTDTPASFDYFKKNLESYGYKIYTEGDKIDFD
1198214..1198501                   PHAGE_Strept_Abc2_NC_013645: hypothetical protein; SAG0125_04795; phage(gi281416409)     3.12e-15            StreptococcusagalactiaeSTIRCD21MLRRVNHVKNVLAHGEFAEWIENKIGIHYREANRMMTVAKQIPNVSTLKYLGATAKHVNGVAKRKQNFLSQISLIPTNPQLPHQTIINTYLYWQP
1199039..1200004                   PHAGE_Staphy_StB20_like_NC_028821: hypothetical protein; SAG0125_04800; phage(gi971746525)     2.39e-107           StreptococcusagalactiaeSTIRCD21MENLSTRLVDKSIEAFIMGLEIYNKPTIKYRIEGFSFFICNAWELMLKAEMLNRNQSIYFKDNPDRTLSLEGVIKKIYSDNSTRIRLNLERIIELRNISTHYITEDYELKYAPLFQACVLNYVNELQRFHSRDVTKAISQNFLTITATYEPLSNEQIRLKYPAEIAEKFIQQANAIDVLVTEYNSDKFAIGIKQNLYITKKKSEADFIVSIANQSPSQVAILKDLKDPSETHKYSYANIISVVNDRLNKKNIKLNYKSGFNQYVLTLVIDFYSIKSDEKYSYCHKIGKSEHYTYSQKFVDFIISEIEKDPQHFVESLKKSK
1200182..1200193                   attR                                                                                 N/A                 AGCTTTAAATCA
1200336..1201508                   PHAGE_Lactoc_bIL310_NC_002669: integrase; SAG0125_04805; phage(gi13095863)           4.38e-81            StreptococcusagalactiaeSTIRCD21MIMKITEVKKKDGTVIYRASIYLGTDKVTGKKVTTKITGRTKKEVREKAKQEAVEFIKNGSTRFKATSVTSYQELATLWWDSYKHTVKYNTQLATEKLLTVHVIPIFGAYKLDKLTTPLIQSIINKLADKTNKGERKAYLHYDRIHALNKRILQYGVIMQAIPFNPAREVILPRNTKKANTKRVKHFENDELRTFFNYLNNLDKNKYRYFYEVTLYKFLLATGCRINEALALNWSDIDLDNAVVHITKTLNYKQEINSPKSKSSYRDIDIDSRTVTMLKQYRRRQIQEAWKLGRSETVVFSDFIHKYPNNRTLQTRLRTHFKRANVSNIGFHGFRHTHASLLLNTGIPYKELQYRLGHSTLSMTMDIYSHLSKENAKKAVSFFETAINSI
complement(1201615..1202226)       30S ribosomal protein S4; SAG0125_04810                                              N/A                 StreptococcusagalactiaeSTIRCD21MSRYTGPSWKQSRRLGLSLTGTGKELARRNYVPGQHGPNNRSKLSEYGLQLAEKQKLRFSYGLGEKQFRNLFVQATKAKEGTLGFNFMVLLERRLDNVVYRLGLATTRRQARQFVNHGHILVDGKRVDIPSYRVTPGQVISVREKSMKVPAILEAVEATLGRPAFVSFDAEKLEGSLTRLPERDEINPEINEALVVEFYNKML
complement(1202556..1202843)       hypothetical protein; SAG0125_04815                                                  N/A                 StreptococcusagalactiaeSTIRCD21MSDAFADVAKMKKIKEDIKSHEGQMVELTLENGRKREKNKIGRLIEVYPSLFIVEYKDTAAVPGAIDNTYVESYTYSDILTEKTLIRYFDDESAE
complement(1202855..1204210)       PHAGE_Strept_315.1_NC_004584: putative DNA polymerase III delta prime subunit; SAG0125_04820; phage(gi28876155)     0.0                 StreptococcusagalactiaeSTIRCD21MAEVSELRVQPQDLLAEQAVLGSIFISPEKLIMVREFISPDDFYKYSHKVIFRAMITLADRNDAIDAATVRNILDDQGDLQNIGGLGYIVELVNSVPTSANAEFYAKIVSEKAMLRDIISKLTDTVNMAYEGNDSDEIIATAEKALVDINEHSNRSGFRKISDVLKVNYENLELRSQQTSDVTGLPTGFRDLDRITTGLHPDQLIILAARPAVGKTAFVLNIAQNVGTKQNRPVAIFSLEMGAESLVDRMLAAEGMVDSHSLRTGQLTDQDWNNVTIAQGALADAPIYIDDTPGIKITEIRARSRKLSQEVDDGLGLIVIDYLQLISGTRPENRQQEVSEISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYRREGEEAEEIVEDNTVEVILEKNRAGARGTVKLMFQKEYNKFSSIAQFEE

#### region 2 ####
1888422..1888434                   attL                                                                                 N/A                 AAAATAAAAAAAT
complement(1898311..1899183)       PHAGE_Cronob_phiES15_NC_018454: putative protein kinase; SAG0125_01035; phage(gi401817584)     3.06e-08            StreptococcusagalactiaeSTIRCD21MVNPEFYEKIAKIFCGDDLELFKYKSGPDLVHFFNNNFKISDSYGQGFPTRWRYVNQKLLDFSSVGKIDEYFNIILSKQYLLTERQISEIDALVHQQRILDELNKVCSVYSLKLSQKDGAFHLVEIDLDLIEIGSGGFANIYFQKSTGLVLKKLNEESARSASIRSRFKREYEITKSCSDIGSIIKVYDFDIGNCSYTMEKADNILDDFVKESFLTEDSQINIIRQILYSMSLVHQRGVLHRDLSPTNIFFINGIIKLADFGLGKNLNTLTSHQTMDTASFGQLFYCAPE
complement(1899197..1899970)       hypothetical protein; SAG0125_01040                                                  N/A                 StreptococcusagalactiaeSTIRCD21MGENLNSNIDPRIIFKQLPPATIIKGFVAGETKCNYEIYLLELLNKSVYFREKGKSKFHAPEDESHGECDAVADDYKIDFKLLSSSSRLQASSLFSPSITNLGNGITAIGESRNPNGEIKATQIHVAFRFRTVSDLIRLKVKRQHVRKQCLEKDIIKVLNMLEKQKNLLLFFPYIFYTEEEISTNELDDIILNAISYDFSSLFAYRHIKVQSFETYLLTIVRDEFNIFKISNKRLKLIEKLSCSELPTFVKLKSYSI
complement(1900040..1901233)       PHAGE_Bacill_Gamma_NC_007458: site-specific recombinase; SAG0125_01045; phage(gi77020163)     4.97e-27            StreptococcusagalactiaeSTIRCD21MDIYADEGISATNTKKREAFNRLIQDCRAGKVDRILVKSISRFARNTLDCIKYVRELKELGIGVTFEKENIDSLDSKGEVLLTILSSLAQDESRSISENATWGIRKKFERGEVRVNTTKFMGYDKDENGKLVINPEQAEVVKHIYHQFLKGYSPESIAKELNTNGIKGWSGKANWYPSSILKMLQNEKYKGDALLQKTYTVDFLTKKRTENDGQVNQYYVTNNHEAIIDTEMWDTVQEELARRKDFREKHKLKTYIMQSDDNPFTTKVFCAECGSAFGRKNWTTSRGKRKVWQCNNRYKVKGQIGCQNNHIDEEMLEKAFMKAVELLQEHRADVVVKWQKLEKGTNLLHKHYAKQMYQLLDLEKFDGTIMNKVLDHISISEVGQIIVIFLEGTEVEL
complement(1901289..1902530)       PHAGE_Clostr_phiCTC2B_NC_030951: hypothetical protein; SAG0125_01050; phage(gi100001)     1.48e-28            StreptococcusagalactiaeSTIRCD21MAVRLIKTKSNRKKQRVCAYTRVSTTNSSQLDSLENQKAYFETFYVNREDVDFLGVYYDKGISGSKEKRPSFQAMLEACRQGQIDLIHTKSISRFARNTMTVLEVSRELKALGVGIYFEEQNINTLSNEGEGMLSVLASLAEEELQSMSDNQRWAFQRKFQRGEMVINTKRFMGYDVDDKGELVINEAEAQIVRRIFQLYLDGMGMHRIAKLLNQENVPTVTDAKWHDTTVRNILKNEKYKGTVLLQKYFHVGINGPKRLNQGQVEQYLIEDNHEPIVSKEVWQAVQDKLASKTWKQGVNKHYRFTSMLKCEYCGSTLKRQVTYKKQIVWCCSKYIKEGKASCRGMRVPEKAIEEWKLRTPVTVIERNEYGQKHYSYSSQESAADGHPSASNQNKSGSLLSGVHRPRRTAIKL
complement(1903068..1903175)       hypothetical protein; SAG0125_01055                                                  N/A                 StreptococcusagalactiaeSTIRCD21MTAFEVVQIIIGFGSFTVALIGLCYKIFKDDDKKK
complement(1903311..1904717)       PHAGE_Strept_315.4_NC_004587: putative cell wall hydrolase, lysin; SAG0125_01060; phage(gi28876322)     6.86e-38            StreptococcusagalactiaeSTIRCD21MTFLSKIKDGCLASWEHGILPSVSAAQAILESGWGESLLAQYPNHNLFGIKASSDWKGKRVDLPTQEYIDGKFVTVEATFRKYDSWEESIKDHALFFSETAWRRSHYQNVLGEEDYKKTCLALQASGYATDPNYGSKLITLIEAHHLNTWDDRILNKKGETTMSKHLVICGHGQGQTGYDPGATNPSLGITEAGKVREFANLMKKYSGNRIDYITDHNVYDYRSIGSLGNGYESITELHFNAFNGQARGSEILIYSGYTADSLDQKLLAILAKRFTNRGFKQVNWLYNANVSASRGYNYRLVEIAFIDNNSDVGIYEANKDSMAREFVQAITGQAQVISPSPNTPQSRVTSYHVGDPVTVQQHATHYQTGQAISSWVKGKTFKVIRVKDVNQSNSKKAYLLEGINSWVLEQDVKGTTNGHSEQTYTVQKGDTLYGIARKFKTSVSELVRLNSIINPSLISVGQKLKLK
complement(1904719..1905117)       PHAGE_Clostr_vB_CpeS_CP51_NC_021325: putative holin; SAG0125_01065; phage(gi509140062)     2.37e-26            StreptococcusagalactiaeSTIRCD21MKELLATNKVLFSAIGGLIGSIFGEVDGFLFALMVFISIDYITGLMAAAVEKKLASNIGFKGIFKKIVLLFLVAVGQIIDEHVLKQGGMVRTAIIFYYLSNEGLSIIENAARIGLPVPEKLKDVLKQLKQGD
complement(1905135..1906991)       PHAGE_Strept_T12_NC_028700: putative structural protein; SAG0125_01070; phage(gi966201536)     3.53e-153           StreptococcusagalactiaeSTIRCD21MADYGSNNDRGYTLLLRVEETGTSTADNTSTVRVQLWLKNGYTTFGMYDCRASVSINGQTLSWSGRPDMYTAHSSLHLIDKTITVPHDSNGSKTISFSATFSGSGGWSPGTLNTGSQTLRLSDIPRSSSATVSGNLMGQDVTITIKRASSDFTHNMTWHFGSLSGTIGTGIATSATWTPSISQLATQIPNSTSGNGHLTLATIYGGKTIGSMTIPITLNLPTSVVPTLGSISVSESHATAKTILTGTSFAQLVSNPKVTFNQGAGIYGSTIPSTGFRAEVFKFENNQWVQLQNVTSSNNGLLGGINWIGRAKVSAYVTDSRGRQSARKEVEITLLEYFKPIFSFSAVRAGSSMNQVTVTRKLKIAPLTINSVQKNKAALTWEVVDLASGQKVTNAGGAANWTSTTEHTKTDFQAILGGTYDTTKSYTIIGRLEDLFYATIFEFTIGPEKVVYGLSPSGMGIGKAWTRGVLDVDGSLPAYFDGDIYMKNKKLLDIFYPVGVIYESTSSSNPSTFMGGTWERFGNGRVLVGVSENESEFNSVNQSGGSKTHTLTIDEMPSHSHAQYVTANNGSGAVRRDYSSDGSSTIYPQGNNTGNTGGGKPHNNLQPYVTVYRWRRAA
complement(1907004..1909919)       PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; SAG0125_01075; phage(gi100005)     6.27e-109           StreptococcusagalactiaeSTIRCD21MLYLLDGQTKTPKWNGQPLFETVSASVEEVLNGTFQLRLTYPITDSGVHETLRADELILCPTPDLGKQLFRIKQVKIQDDTVELECYHISDDVMKRQVKPFSAINTTCQSALMRMVEACPSDLGLFSFDSDVTERHTYVSDEDLTLYQALMDGKHSLLGMWEGEFVRDNFQLMVKKHRGNDKGVILTSHHNLKAFEDKGDSDKVITRIYATSTFQAEGSDEDTVLSVVVESPLINQYPYIHEARYENNTLQTEEELRQWAMAKFTHEHIDNISRQITVEAYQLDGQEVHLGDTVTLKSQKHKVDVKKKAVGYTFDALEEVYLSVTFDDEVTFTNSGSSGVNSLTSAAKTILDVNQSVTEHRASKERANFNKVFDRQFERLQTEVEDGIAIAKAEGERSGKKAALDYLATNGLEARVAAFQKATIDELTVSSSAWMTRLVSQQILSEYVKSLEVEADKVVIPGQHTPVFSLDRDGNLSIDTPLLKVRGESLATQADLKTISLTPGPKGDAGADGVGIQSREQYYLVSAQKTGLTATSASWTKTIPTLTSTLKYLWNYEKTTFTNGSTTVTTPVIIGVYGDKGVDGKAGKDGKTLYTWRMYADNDKGDGISAVSTGKRYLGLAVNKESATPSTNPSDYTWSSFFEGTELGGRNYIDDYAMKAATFSSITSEWKKEVVEDTSSVSGVTVKMTCTKAGTGGFHRNFYDLRSRIGANMTFSIDLKASKTVSLTIGNELGGTKVVQVSSSWQRYSVSWKVTSAQNHSYVFYLKSGTWAVGDVVYLRNVQLEDGNVASAPGPSLNDLIAQIDAKADNGFMKQQLDLLTEKTESLRVDLEARALAKEVADWLKSYKEFEKNNEAVLAQFNQDFIDNTARIAAIEADLKANSLLLNFVNTYLRAGDNGVIIGKKDNSEYIELTPQGMMIKSAGNAVMTVTVGVIKIHHGVFVETLQVGYYRLEAARHNAKHLVCRFIDAK
complement(1909919..1910644)       PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; SAG0125_01080; phage(gi100006)     1.20e-100           StreptococcusagalactiaeSTIRCD21MIKHNELVLNRKGTSSFPFKVLVEDRPSIQVPRSKTQLLDHRGLSGAIVQTNKHREVIEKSYRLYLIGASEKEVNEFSAFLMQEGFWLESERLKLTRLWCYRTDSFDIKQDDHDVFVIDVTFICHPTRFFKNVDRQVLTTNGVLKTQGSALAFPTITITGQSVSETSFTVGDQVIRIEKFTEPLVMVNHPERPSFKTLSGKAVKWSGDFITIDASHPTQSVGVILGSGILSLTFETNWGWV
complement(1910641..1913760)       PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; SAG0125_01085; phage(gi100007)     0.0                 StreptococcusagalactiaeSTIRCD21MAGNIKGITIEIGGDTQPLQTALKGVNKQASEATKELRQIDKALKFDTGNVTLLTQKQEVLAKQVETTKEKLATLRQAQAQVEAQFKAGNIGADQYRAFQREVESTQTVLKGYESKLESVNRALSENGAQVETNQSKLNRLQNEQAQLVSESEKLQSSFKLQESALATTASEADKLALAQQKVASHSEILEKQIHNLEQQLSLTKSEYGENSVEANKLEKTLNETKTAYNNLQNEMEELASSSASSKASLEETNSLLKADLLMEFGDQLGELSQKLIDFGQQSLDAFLEVDEGMDIIVTKTGATGSALEEMTDIAKTLATELPTDFNTAGSAVGELNTQFGLTGDALKSAATQLIQFSEINGSDVTSSAISAKQAIEAYGLEATDLSSVLDTVTYTSQSTGVGVQELMDKAVAGSPQIKALGLSFDEGITLMGQFEKAGVDSSAALSSLSKASVKYAGDGLTLQEGLAGTIEQIKTSTSETEALSLASEIFGSKAAPRMVDAIKRGALSFEDLAGTADKAAGIVTQTYEGTLDPVDKFTTAQNTAKLAMAEMGDAIAATLAPILEVIASLLQAVATWFSGLSEPVKQFIVIVGSLVAALGLVLPIFIALQAAAMAMGTTIMGMITAAAPIVGIILGVIAVVALLVVGIQQLWQHHEGFRTAVTEIWNAIYAFLTVIIQQISSFVMSIWGTLITWWTENQQLILNATNTVWTAISTVIQTIMTILAPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEVIKSLISIVLSAIAQFISNSWNGIKGTMTNLLNSIKGVVSNVWNGIKSTISSILSSIGSTVSSIWNGMKATISGVLSGISSTVSFVWNGVKSTITNAINGAKNAVSSAINAIKNLFNFKIKWPHIPLPHFSVSGSANPLDWLKGGLPKISIQWYAKGGILTKPTAFGMTGNSLMVGGEAGREAVLPLNNQTLGSIGSSIAATMPNKGTTITVNITDVVIREEADMKKLADYVAGRLAAEMARQALLRGGRV
1913827..1914063                   hypothetical protein; SAG0125_01090                                                  N/A                 StreptococcusagalactiaeSTIRCD21MVLALKSISLFYTAFSPCSVPIKNCQSLLGLLCELQSHLDFLAPHNPSDSQVPCQLRYALNRQWKGQSPYNKRGSFLP
complement(1914055..1914474)       PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; SAG0125_01095; phage(gi100008)     4.88e-60            StreptococcusagalactiaeSTIRCD21MRQNITISGKTYPLATNAYTPIAYKEQFGKDYFHDLFNMLSAESIMAQLEQLEEGEELKASQIDLSILSDFDMTFFHRLFWVFAKSANPRIKPFEDFFMSMEEFPLQEVGPVLMSMLNQGMTTRKKQKLPKQRARKSSR
complement(1914486..1915055)       PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; SAG0125_01100; phage(gi100009)     5.38e-68            StreptococcusagalactiaeSTIRCD21MAEKNKVTFGLQDVHWAEVTNEGADGALTYGKVERLRGAAELTLEPTGDKGSYKADNINFYTTESNDGYEGTLKVALLYQEFLTRVLGEQLDATTNTISEIANSEKKNFALMFRFEGDKKETLHVLYYCYASRPTVGSKTKSGSDINEVELTFTASPRPLDKVVRRRTTEETSDEIRENWFKSVFEPAA
complement(1915058..1915384)       PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; SAG0125_01105; phage(gi100010)     1.03e-10            StreptococcusagalactiaeSTIRCD21MRFEELFPVLKKTKLPVAYHHFEEGHSPSPPFMVYLVTDSDNLGADNWAYHKAINVQIELYTTKKDLATEKTVESVLDAHRLYFDKVETYITNEKLYQTIYSITLLGG
complement(1915393..1915761)       PHAGE_Strept_phiARI0131_2_NC_031941: hypothetical protein; SAG0125_01110; phage(gi100011)     7.50e-24            StreptococcusagalactiaeSTIRCD21MTKIGLDDLASVIEKDLTTYAKDTTDTMREVVEEVTDDAVDTLKVTSPKRRGKYAKGWTSKATTDTNTALTKAIHNRTPGLTHLLEDGHAKQNGGRVEGRKHISPVEKKAIQSFEDKLRQKL
complement(1915754..1916092)       head-tail adaptor protein; SAG0125_01115                                             N/A                 StreptococcusagalactiaeSTIRCD21MKIAPLREQLVFQEKRLKQDDIGNESAIWDDLFMRWCSCRPLALTESDGSATKLIHNKVQFTLRYDKAVLALNSLTTRIYFRDQYYAIESIDGDTVARSLIYIVATKEELYD
complement(1916092..1916349)       DNA packaging protein, QLRG family; SAG0125_01120                                    N/A                 StreptococcusagalactiaeSTIRCD21MMTLEEVKLYLKVENGEEDYLIEQLMATSRQICEDILRESSTSEVLKTAILYGVAYLYEHREEANHKELKETLYHLLLADRKDVF
complement(1916346..1917554)       PHAGE_Burkho_KS9_NC_013055: major capsid protein gp5; SAG0125_01125; phage(gi255033737)     3.19e-40            StreptococcusagalactiaeSTIRCD21MSKLLELKEKRNAAWAQAKAFLDTVRSEDGLVSDEDSKRYEEMEAKIELYNKEIARLERQEKIDLELAQPTSQALTTQPTVIVDNQKEDEKKGVASDIYTQTFWTSVRKRNFYDVKDVLRVGEDTEGGHLVPDEYEKKLVQELQEENFFRSLATVIKTSSGERKIPVVTGHGSASWMDENGLYPETDETFGQVTLDSHKIGTAIRISEELLNDSVFDLESYMTSEFARRIGTEEEKSFLVGDGSKKPTGIFTQADVEGPTTATKDVTFDDMIELYHSLPAPYRKNAVWILHDTTVKAIRKLKDNNGNYIWQPSTQAGQPDLILNRPYYTSTFAPLPEAGNKAIAFGDFSYYWIADRQGRTFKRLNELYANNGQIGFLASQRVDGKLVLPEAVKTLTIKGKTA
complement(1917568..1918266)       PHAGE_Geobac_E2_NC_009552: putative Clp peptidase; SAG0125_01130; phage(gi148747731)     2.51e-53            StreptococcusagalactiaeSTIRCD21MRKFWNFTDEGEVRTLRIEGQIADETWFGDEVTPQLFKNDLTSETGDITLWINSPGGDVFAAAQIYNMLMDYQGDVHVIIDGLAASAASVIAMAGTTVSMSPVAMMMIHNPWTFAQGEAKDMAKVIEMLGEIKESIINAYELRTGLSRTKISHLMDSESWFNAKKAVELGFADKVLFEKEETPEQDYQNSYTFSRVTAAHDLVVKLQASLQPPKPQKTIPFNQLEKRLNLLK
complement(1918259..1919548)       PHAGE_Burkho_phi6442_NC_009235: gp4, phage portal protein, HK97 family; SAG0125_01135; phage(gi134288632)     1.27e-85            StreptococcusagalactiaeSTIRCD21MGLLDLLGRKRARDKPQNSYEGQDFYYLFGRTTSGENVDEFKAMQTTAVYACVRILAEAVASLPIHVYEMTSSGKKKKIDHPLYFLLHDEPNPEMSSFIFRETIMSHLLIWGNAYVQIIRDKAGRVISLYPLLPDKMSVHRDDSGKLYYKYQRQTEENPNFKDKGTVLLKQEDILHVPGLGFDGLIGYSPIAMAKNVIGMTLATENYGAAFFKNGANPGGVLEHPGILKDPKRVRDSWNAVYNGVTNAHKVAVLEEGMKYTQVGIPPEEAQFLQTRKFQINEIARLYRIPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPWVVRLEQAFKRSLFLPEEKKRYLIKFNVDGLLRGDYQSRMNGYAIARQNGWLSTNDIRELEDLNLLSDEEGGNLYLINGNMTKLKDAGGFMKQPTETEPAEDPPEEEEDA
complement(1919629..1919901)       hypothetical protein; SAG0125_01140                                                  N/A                 StreptococcusagalactiaeSTIRCD21MELVKTIQIGDDIYLPIPDQFGIQEGQEFNLYQSSDGTLVLSPLDSKLSADYQSLSSDEQETTVVEQATLDKVANSVLSRHLDAFKELAE
complement(1919918..1920223)       plasmid stabilization protein; SAG0125_01145                                         N/A                 StreptococcusagalactiaeSTIRCD21MKEYQVTISDDAKADLLSIYHYVRDELCAPQAADNLLEKISQAMLSLSIFPERCSIIEDLVGKGYTFRQLIVKKYRIIYHVLEDEVIIVAVVYGSRHMDNW
complement(1920223..1920525)       plasmid stabilization protein; SAG0125_01150                                         N/A                 StreptococcusagalactiaeSTIRCD21MAKTGTLNLRVDDSVKSAADEILKRLGIPMSTAIDMFLNQIILTGGIPFDVSLAEAPQRVNVDYMSQEEFYDKLITSFEDAKGGKRQDVREFLSQFKENA
complement(1920581..1922173)       PHAGE_Gordon_Kita_NC_031233: hypothetical protein; SAG0125_01155; phage(gi100002)     2.16e-93            StreptococcusagalactiaeSTIRCD21MTYHYEPSPFMLPTSRYDKAKADRAVTFINNLSHTKGKWAGKKFDLLPWQEQIVRDLFGIVKEDGNRQFLTAYIEIPKKNGKSELAAAIALYLLYADNEASAEVYGAACDRNQASIVFDVAKQMVLMSRPLEKRSKIMGATKRIVNYSNAGFYQVLSAETGTKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAGTDKNSICYELHTKALDILKGRKKDTSFYPVVYGLSDADDWNDEANWLKANPSLGHTIGIDRVREAYQQALDNPAEENVFKQLRLNMWTSSSVAWIPEHVYAKGNSPIDYEALKGRDCYAGLDLSSTSDITAFVLVFPPRHSEENYIILPFFWLPEDTLELRCRRDHVLYDVWERQGYIKTTEGNVVHYGFIEAFIEQLSETYHIKEIAYDRWNATQMVQNLEGMGLTMVPFGQGYKDMSPPSKEFYKLMMEGKIQHGGHPVLKWMGQNVVMRQDPAGNIKPDKEKSVEKIDGIVALIMGLDRCIRHQGNGTSVYDERGLLSF
complement(1922680..1923129)       PHAGE_Bacill_SP_15_NC_031245: hypothetical protein; SAG0125_01160; phage(gi100310)     1.85e-06            StreptococcusagalactiaeSTIRCD21MDDKTLERLRKTYPTGTRVRLVHMDDPYSVPIGMLGTVEDVDDIGSLIVSWDNGQSLNVLHGIDRVVIVEPNRHDFIRSIYCYLRAGHNEFVFDSGDIPVQLTHEEVITLMTSTHPQTEIDIYIDECNHFNLKPTTVLTKEEIEKAIQE
complement(1923140..1923394)       hypothetical protein; SAG0125_01165                                                  N/A                 StreptococcusagalactiaeSTIRCD21MTKNEFNEIIDSCFIHLTVMKQHYTKPRNYSLDVIEQGNLDQINDLLNDITNGIELGGFNELEARYIYEDTEVLWAEVSQTFVR
complement(1923472..1924725)       PHAGE_Clostr_phiMMP02_NC_019421: DNA-cytosine methyltransferase; SAG0125_01170; phage(gi414090431)     6.74e-118           StreptococcusagalactiaeSTIRCD21MTLTFLDFFAGVGGFRRGLELAGMTCLGYCEKDKFARKSYEAMYDTEGEWFHDDITSIDPTRLPKADLWTAGSPCQNLSIAGKRAGLYGERSGLFFTFVDLLQSQKEEDKPEWVLLENVKGLLSSGGGRDYLDYLSILDQAGYDLEWQVFNSKDYGVPQNRERIYTLGHLRSRGRRQVLPLSGESGSHLKQLIGGMQSYRVYDPSGIATTLVGEGGGLGAKTGLYLIDQSLTEPKLTDEARCITARYTAGATKRTAMNSGVLEVQPILTPDRVIKRQNGRRLKEQDEPMFTLTSQDRHGVLEGIKVRNGTKQGYQVAELGDSVDLSYPGSQTRRARVGKGIAHNLSCGGRMGAVVWNGRVVKIRRLTPRECFRLQGFSDDLFDKAQAVNSDAQLYKQAGNGVTVTVVYTIGKAILSA
complement(1924722..1925978)       PHAGE_Strept_EJ_1_NC_005294: transferase; SAG0125_01175; phage(gi39653711)           1.81e-85            StreptococcusagalactiaeSTIRCD21MTTQPNMEIKELPLSDLKPASYNPRKKLKKGDKEYEKIKQSLLKFGYVDPIIVNDDLTVIGGHQRLTVLKDLKYETAKCVIVSLSKEDEKALNIALNKITGQWDDQPLADLLLDLQESDFNLDLTGFEPPEIDDILSNIHDKDLSEDDFDVDEELKKPTVARRGDIWQLGKHRVICGDSTEAETYEQLLGDKKANLIVTDPPYNVDVEETAGKILNDNMSDRDFYQFLFDMFTQVESHMEADASIYVFHADTEGLNFRKAFKDAGFYLSGSCIWKKNSLVLGRSPYQWQHEPCLFGWKQKGKHQWFSDRKQTTIWEYDRPKSSKDHPTMKPIQLMAYPIQNSSMRGTLVFDPFLGSGSTLMAADQTGRVCYGIELDEKFVDVIVKRYMESTSNRDVSVLRNGETLSYDQALEVMEEHS
1933404..1933416                   attR                                                                                 N/A                 AAAATAAAAAAAT

#### region 3 ####
complement(2002194..2002691)       phage tail protein; SAG0125_00815                                                    N/A                 StreptococcusagalactiaeSTIRCD21MIIDFKTVSTKGLETSPVAEALAGLRANEARYFWNKFKVAYETFPVSDYPELMADINHLLKNERNLVFAAKPLEISQLFLENRILWTHVFYEDGLAINILYELDNPKKRAVGLKLSDGMDIPIELADKFKFARQKSKLAGIIRGSYFTLKGESETLMQRWLDNMK
2002738..2002749                   attL                                                                                 N/A                 TTTTGAAGAAAA
2002913..2003509                   PHAGE_Lactob_LfeSau_NC_029068: hypothetical protein; SAG0125_00820; phage(gi985757753)     8.02e-26            StreptococcusagalactiaeSTIRCD21MTKKIFLFICATLLVGIALYTPTTSIFNHNNVYAATKKAKIKFNKTQKKIVKKAREYAKSGHMSKDSIIEKLKKDSKKYRQEDINFVINNLKVDYKKNALISAKIYSKTMNLSKQSIFEQLYSESPDKATHSDKFTKEESQYAIDHLKVDFKENALETAKSYQSSSSLSKEEIYKQLTSTLGDKFTNDEAQYAVDHLK
2003699..2003989                   PHAGE_Bacter_Diva_NC_028788: transposase; SAG0125_00825; phage(gi971743573)          9.86e-29            StreptococcusagalactiaeSTIRCD21MSRKVRRHFTDDFKQQIVDLYNVGRKRSSLIKVYELTPSTFDKWVRQAKTTGSFKSVDNLTDEQRELIELRKHNKELEMQLDILKQAAVIMAQKGK
2004217..2004786                   PHAGE_Bacter_Diva_NC_028788: transposase-like protein; SAG0125_00830; phage(gi971743572)     7.08e-52            StreptococcusagalactiaeSTIRCD21MKRLNLVSVYQKATFKPHSRGKNEAPIPNHLDRQFKQERPLQALVTDLTYVRAGNRWAYVCLIIDLYNREIIGLSLGWHKTAELVKQAIQSIPYALTKVKMFHSDRGKEFDNQLIDEILEAFGITRSLSQAGCPYDNAVAESTYRAFKIEFVYQETFQLLEELALKTEKATLFCTTFIKCCLFRFLPML
complement(2004912..2006726)       PHAGE_Clostr_phiCT19406A_NC_030950: hypothetical protein; SAG0125_00835; phage(gi100067)     1.97e-35            StreptococcusagalactiaeSTIRCD21MSFFEKLFSKFNKKTTSDIVQFNNNSHINPFGFVDSQQMDINDNNINFIKNRFIAFDIETTGLNSQQDRIVEVGAVLFENGKVVDSYESLVNAKVNISADVTRINNITNRMIKNAPSENQVYYELVNFLGDALNGKTPVCAHNAKFDMGFLCNTLSRLGYNGEIKYLDTLSLSRKNVKGLRNYKQNTVAEYFNLQNKNSHRAKSDAIICGNILTKLFFIIENQKSRKSFSSKNNKISPEELEVCAVIQNIIFERKGDTDLVGYYKNSSGYIDVYYLYKIVRFKFTKKGKYIIVPRDLKGSENFILESCTLSEGGHDFVRLYFNSPLEVKEISSYIFEEYINTKRSATEYLNYNKNYVDEYKASPLMENVLSNTDVKNILVSINNKVYNSQNNIIEKDLIDRKDIKINPVNNRIPVSEIQNLTNWHKGFDLGFPFWEEGEKYRKEGNLKRSILLYDLARSNGYCSPALFESYAMAFHRLKDYENEIDILDEGIEREGNLGRLITRRNNAMKMLIKSRNEQKKIKENESAENILFSEIEILKRKKTRKNARPVLKMDDEMNILEHFESISDAVKKTGINSKSIRDASKGIQKHAGGFVWRYEDEYK
2007142..2008377                   hypothetical protein; SAG0125_00840                                                  N/A                 StreptococcusagalactiaeSTIRCD21MVNQLIILGNGFDRASDLKSGYMDFFNFRFKDSDSTSSFWYYILRSCYNKKWSSDLWSDIEKLISVHLKNIITLYNNETILSGKDIESIYIETLSTDYSRNDYSTSEELTQKALHNFLWNHNGIPIVPELDNLLLLIQKDLKIVEDEFCSYLTNQIEIQEQSKDDYFKDITNLGNNYLLKSRIIFELLYKSNISSAFTCNSFVALHDFHNENCFNSYEGFLSYIYDLESNNEFNVETSILNFNYTLPRIDKLQRNIHGTLNDKNIIFGIDYDSLIDIQKDKNVTLPVEFTKSYRILQNGNIFQYPIPSELTFIKFYGHGLGEADYSYFQSIFDSINLYSSDTVLIFYWSCYNENIREQIKSQQVHAVHKLIEKYGDTFNNKNHGRNLFTKLQLENRLIIQEILYNDILNPY
2008511..2008526                   attL                                                                                 N/A                 ATTATTTAAGAGTAAC
complement(2008579..2009760)       PHAGE_Bacill_phIS3501_NC_019502: phage integrase; SAG0125_00845; phage(gi422934298)     2.17e-25            StreptococcusagalactiaeSTIRCD21MANKKYRGVSRDKQGRIYYQTEFKANNITGKRQRKKSYKDQFGNPFRSEKQAYDELCRVRVEFQTKDNNDGYYLSFSQYMEEVYLPYYKQTVQAVTYRTALTHHKMFVEIFGSKRLSEIDVRECEKFRIYLIEKYSPNYAKGVWIRFKHCIGYAERLGYIDEFPCKSLDNPKGKRPDTKFWTLEDLKKVVATFDLRDYEERHRFTAIWLYFFTGLRVSEGLSLIWSDIDFDKKLLHVQSTLEYEGNGVFTRKNPTKTSAGIRWIELDDETLNVLLRWRSIQVENGDDSYVLARFGKPLNKCTLSRILKRQAKKAGVEVITGKGLRHSHDSFLINVLGKDVLYVSKRSGRVDKATTLNTYSHLYDSKKASGGREISQALHKFGVSSNPTKTPLN
2018569..2018584                   attR                                                                                 N/A                 ATTATTTAAGAGTAAC
2020445..2020456                   attR                                                                                 N/A                 TTTTGAAGAAAA
