gi|00000000|ref|NZ_AP012323.1|  Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456 DNA, 2211039, gc%: 62.66%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
72251..73924                       PHAGE_Clostr_phiCD211_NC_029048: Cell surface protein (fragment); BBBF_RS00280; phage(gi981220894)     1.23e-13            BifidobacteriumbifidumATCC29521JCM1255DSM20456MPEYLKAVGISQQEYLSPKWSNALERIAIQRALEAYTWADGHTRPDDDWCFGASYKGLTSNAEVLAWGTRNISDAVDLWASEKSDYINEVNGHGSGVTGHYTTLTDPDYGSYGFAGGFSDSSAYSGEAVSRGYASEYSDETPTNLNGYGRFEISVSQRHINEGMTWKGLHWNSSSALEPGKSDEAVVRLSYGANRYNLLGGTWSSSNTAVATVTEGNIKTLKRGNTVIKVNAGGRLAQGNVRVAPAMQRIFGATRYDTMSQVVQKEGLKQGQTVIVASGTNYPDALASSSLAGALDATIVLTDPQSLSAQASERIAAIKPSRIIIAGGPAAVSQNVEQQLKQYSSNVRRYYGETRYDTSLALYKAGERLGAKWGAIALLMTGDNYADALSISSYAYMSHMPIFLCSSTKGFTDGEIKEIKKMKKMWVIGGEQAVPQRFIERQIAGGMDERIAGSTRYETSINVADRFAGDYDGFLRMNNVVFTTGMNFPDVLAAGPFAGRNKAVLLLADPNGSTANFVKQYVKQHGNVDNAYIVGGENAVSRNTANGLADALDMLRP
complement(74102..74485)           PHAGE_Bacill_0305phi8_36_NC_009760: low copy number virion structural protein; BBBF_RS09340; phage(gi156564190)     8.03e-06            BifidobacteriumbifidumATCC29521JCM1255DSM20456MGSFRIGWRTNAPIILTGKSALSSQFANQLRQLAPSRIIVVGGSAAVSDNVLHTLHTYAQSVNRVSGATRIDTSFALYQNASGWGSTAIVATNANYADALSVSSYAYTTKDPVFLCDSANGLTKRPH
complement(74699..75451)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposition protein; BBBF_RS00285; phage(gi557307613)     6.68e-11            BifidobacteriumbifidumATCC29521JCM1255DSM20456MIIDTETKRKLREMNASDLLDAFERLDERTTAPMSHTEVVRLAVDNAHSGHMDAKIQRLVKRAGLRYPQADLRTIDLVEERRLDRSVIAGLDAGNYLEQRLNVVFQGATGSGKSHLLCALAKSACRARYRAVYVRMPDLAEQVTVASNKPGGAPKLVRKYATYNLLAIDEWLVDKPDEPFKRFLLELMELRYDTVSTAFATQLATKEWHRQLGGDAIADAILDRIVHNAVWINTGEYNMRQRHGQAMLDN
complement(75458..77008)           PHAGE_Entero_fiAA91_ss_NC_022750: IS21 transposase; BBBF_RS00290; phage(gi557307612)     3.34e-13            BifidobacteriumbifidumATCC29521JCM1255DSM20456MVRKIQAKLVLRLHGRGLSGRAIARSQGMSRRSVADVLDAAKAVGIGWDDVANRPDDEVYALLFPGRGERESVYEHPDWGKVHRELARVGVTLRILHGEYVDECRQSGRPHMGYDRFCKLYAAYVARLGVTSRVEHKAGRTIEVDWAGKTMRIADPVTGDSSTVYLFVAVLPFSRYAFVEPILDMGQNSWLRAHVAMYEWFGGSTPRLVCDNPKTGVIKHPREGEIVLNDAYRGMAEHYSAAVLPGRVRKPKDKPSAENTVWHATMALVGAMRDREFGSLDELRAAIRAWLAEYNSRAFQKRDGSRSSVFESEEKPLLIALPPMPYEVADWVYGRRVQANSHVAYARNWYSVPYAYIGSTVDLRIGASMFEVWHGNTRLCSHRLLPTTASNQWSTNESDLPGKAVWRPWDRKRCEQWARRIGPGCAAVIGRLFAMERLDEQGVEPALAILRLSKRYSAQRLENACSLSLRSIASPRYSHIRPILESGQDATGGIPDGAVDDAGWVRGGDYYADMGR
complement(78178..79254)           PHAGE_Clostr_phiCD211_NC_029048: Cell surface protein (fragment); BBBF_RS09345; phage(gi981220894)     2.35e-20            BifidobacteriumbifidumATCC29521JCM1255DSM20456MAMVSQTALPSAASGAAVVASGNSFPDALAASSLAGYLNAPILLTDPKTPSNATVSELDRLDVNTIYIIGGTNAVSNNAEKVIQASRPSATITRLAGSTRFDTAYQIYSELTKLGVKSETAIISTGANFADALSVSPYSYMQSAPFFLSSQSGLDEESLAALKDFQSAIIVGGTNAVPSSVEQQLRSIGVATSRIQGTTRYETSLEISKFTLEGLSIDPSSVVYATGANFPDALSGSALAGLNKTVLLLAQNDSSPTIGASSILPNVESAYVLGGQNAIGPATFNAIAKSFGLSDREYVPQPTPKPQPKPDDPVYGTHKAGEFCKKSDLNKTDHDARNGKLIVCKVASGDNKPRWHYV
79815..80708                       PHAGE_Clostr_phiCD211_NC_029048: Cell surface protein (fragment); BBBF_RS09350; phage(gi981220894)     7.10e-10            BifidobacteriumbifidumATCC29521JCM1255DSM20456MIPIPARQSLFSADRALRMRVQIDHVVAVGEAYESGADYWTKEQRIAYANDPYVLPAVKGSANASKTDKDAAHWLPGHGYDCAYISRQIGIKQHYHLSVDSSERNAMKTSLSQCPSGQTVPLYDGNNVMPNTPELPSNPSKPNTPSAPSEPTSGKLVRLSGITRYDTMSRIVDTVFPKSASTVVVASGENYPDALAASGFAGVLDAPILMTDPQYLSNQTKDQISRLKPERIIIIGGQNAVSGNVEQSLAQYATVQRIGGVTRSDTALKLYDSDVQGEKNWGRTAIVVTGGSGLSFC
80689..81228                       PHAGE_Clostr_phiCTP1_NC_014457: phage protein; BBBF_RS09355; phage(gi304360689)      6.47e-05            BifidobacteriumbifidumATCC29521JCM1255DSM20456MAYRFADALSVSSYANESQSPIFLSNIDSGLSSEQLEALSNGQFDRILVVGGQRAVPDSVVKQIRNSSGSVVSRISGTTRYETSATFAQWTSEHGGLHMNNAVFATGANFPDALAAGPFAGRNSAVLLLADPNGSTANFVKQYVKQHSDVDNAYVVGGESVVSRSTADGLADALKMGRP
complement(81322..87546)           PHAGE_Clostr_phiCD211_NC_029048: Cell surface protein (fragment); BBBF_RS00295; phage(gi981220894)     1.02e-18            BifidobacteriumbifidumATCC29521JCM1255DSM20456MPRPLTAAKKLWTVFCTLATCITVGMTTNHIAMADSATQNSNIIASLKYMSELNKLRQSRRTALTAQQIIEAQNADNSANMRSGQVAEDAADGSPVPELNVNWDLMSWAQKRADALAERASVNQSQPISHDDMYVGAPSWTSKYNLGESPNYQSGTYWFGPEALFIGYPETGQSNHNPIQSWYSELSAAAGSNRQGYGHYLTEVSNLADTAGMASAQVTSGRWEGATIVVLEIGYTGNHSDRGTTQSVSDALKQYVGSTYTVKYHANGGNGSMDDQKFDMDSTVPLYGNMFTRTGYQFSGWNTKKDGSGTQYSDYNPIYNIANAGEVVDLYAQWTPNTYTVYFYSSGTGSGGGSSRSFTYDQAQNLPNPADVGISNINGTFTSWNTEYDGSGTSYQAGQSVKNLTADEYGSIYLYAQWKTTHTVHFRAYNATPEYFKDQKVADGETATRPADPTRPGYAFRGWSTGYSDDSPLYDFSTPVTSDIWLNAQWDSYPYTIRYDANGGTGSMPDQKVASSPSNNTATLKPNEFKYNGKVFTGWNTKRDGSGTAYKDNTSYGEFGATNSDQVIILYAQWTDAAVKSIDAITTKCGYGKCYPSLPDEVTIHLINGKTITENVDWNQEQAAAIWNKDASELHLGDVFHVDSVSIVGFPNQKIRATVVVSDIAAPSLKGLDTISAKAGDRSFSTMYGISAIDDHDGDITRNVTVSGNFDISAPGDYRLTYTVKDNAGNEVTGDRTIHVTKNEIVTVSYDANGGSGSVAPQTFGIGEYQSLRSYNLVRTHYNFTCWNTKADGTGKNYYTWNKAIFDDSDVPANGKITLYAQWERAFYSVFFYPNFPDESSTEASVSQNIKYDEYENLADNSFNAPGYTFLGWNTESDGSGTSYSDGQRVKNIYNEYGYGQHLYAQWEANKYTVKFDANGGTGTMPSQTLTYDKNERLNRSTFKAPAGKMIAGWNTKADGTGTGYDYCAPVKNLLTSGSITLYAWYSPIRYSSISVQTPPKKASYKTGETLDTTGLVVSAIQNNGDTVQLPRSEYTLSQPNMNSNGTKRVTLTLKSNTAKTTWFDITVGSAAPTVEESHPIADSDETVTNYVVSLKEGTATDVLDKAVTGAEALHAYKLMSYPEISVFFVQAHTKTFASDFARWAAANGIAVDTVAYTRDKLREEEIRYGNTTSSDVATTTKWKSGNAIRKPQKDSSDPNTNIYDAWGITAIGADKAQQTNIAYKPTLTGVIDSGIEDDNPDLQGQVNSTYSVDCTVNGIPQQGTDSSTGHPVWWPTAGDDADKHGTHVSGTIAASHNGSGVDGVNPNTTLAAIRVLKHNHTYLEQEVCGYVWAAKAGMDVTNASIGNRSPDYPGKYAVDKAYDTVLQRAVSYATKNNVVNVASAGNNKLDIDNIHDDTSLDRMRRQIEKRQPREVIGQAIDASNNENTFNPLTGLANQQSQGLGGSGLSLASNKGYIVPAMLDGVLAVSAVQKRGTYSVAPLSRANYSNYGSSSIDVAAPGSNVYSTYGTNYAYMSGTSMASPHVAGVASLLKSVHPDYSVSQIEQLLKKQAKERYNDLEAPADGAEYRGAGLVNAYAAVTEDQEQPTVSAQYSTDGGSSWHDLANARISGKATIRVTATGAVSSVSMNVDGQNRSAQGGDSYNGNATATVDVDFSTLTAVETCSLVLKAYGLNYDVSNDDVSKTIQFQAGRDAYATVTFDSNGGSTIASQNIHIGTMATQPMNPTRSGYTFQGWYTAKNGGTKYDFSQTVNGDMTLYAHWAKEPNALQRLAGDTRYDTMGAVVNAANWKTGGTVIVASGGNYPDALAASGLAGTMNAPIILTDGNILSPQAQSQLNQLAPSRIVIAGGASAISNTVMNSLKNICPNVQRVAGETRVDTSLNLYREGSGWGSTAVLATAGNFADALSISSYAYHMKAPVFLVNTNDLTARQRSALVSGRFSKVIVVGGTNAVSDHVAANAQSITGAQLVRLSGATRYETSEQIARWTMNNGLSMNGAVYATGANFPDALAAGPLAGKSGSATLLVENANSPAVSFSAEYKGKVDKAYVVGGTNVVDHITANAIADSLGLRHAQ
complement(87684..88982)           PHAGE_Plankt_PaV_LD_NC_016564: ABC transporter; BBBF_RS00300; phage(gi371496158)     1.63e-13            BifidobacteriumbifidumATCC29521JCM1255DSM20456MAEIALTEKTQEEAKDERPVVLKVDHVAKMFRLPTEQATGLKMAFLNWTKGIKGYTKQHVLRDINFEVRQGDFFGIVGRNGSGKSTLLKIISQIYTPEQGSVTVKGKLVPFIELGVGFNPELTGRENVYLNGALLGFTRTQIDAMYDDIVEFAELEDFMDQKLKNYSSGMQVRLAFSVAIKAQGDILVLDEVLAVGDEAFQRKCDNFFAEIKKDPTKTVILVTHSMDAVKKYCNKAILIKDGEIIASGDKNDVADRYTLENLKVERKNEEKEKDKEKEGEYPLGLSERVPTFRILPVSEQMLTCKDTFEFDVEYDLRDSKDIEFYIPMSVLDVKRGGVPYDCGVSFKVNKTGHNKVHFALPLHLFNDGDFKIIATMRIIPDTSNLKNFEQLAFTSDENSCYFSVRNPGTVNFAGLLNDSAMRIDEIGMSACD
complement(88985..89818)           glycosyl transferase family 9; BBBF_RS00305                                          N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MKDFFESLKKRYHYAMVVFKELVKTDFQLRYQGSFLGMVWSVLKPLMLFAVMYVVFVKFLKFSDGTPTFPISLLCGTCLWSFFSESTSMGMQSIVGRGDLLRKVHFPNYIIVASTTMGSMISLGINLCVVILFGFFAHAHYTWRVLLVPFSIIQLYCLGLGVALLLASLFVYFRDVAHIWEVVLQAMFYATPIIYPISMVANNPDFSWAAKLLMLNPSTQVIMDIRHNLLSPEYVPTAWSMVDNKLLCLLPYVLSAFILWLGIHVFRKYSSKFAEVL
89957..91843                       PHAGE_Archae_virus_NC_008695: hypothetical protein; BBBF_RS00310; phage(gi119756986)     2.61e-08            BifidobacteriumbifidumATCC29521JCM1255DSM20456MVLTAEQHHPNIKVFVSAHKRATFPEGKSILPVQVGAANAAIRFANTLHDDEGENISAKNPCYCELTAQYWAWKNEDADYYGFCHYRRYFDFTDTPHKENDYGEIIDSYIDDHALAEYGINDEAIARAVDGWDVITTPLNDVRRIGGFSNLKQHWAADEHLRLKDLRHMYDILCTRHPDYKVDADAVLNGRTAAFCNMFIMRKEIFFEYNEWLFPLLDEFADATDFSKMDVQTTRTVGHLSERLLNIFIAHKQRTGAHWKIKRMQCVHFLRPDPMTTLEPLGTEYGRIVPVVFAADNNYVPMLATTIYSMLKNASTNRSYDVIVLERDITDENKRYMERFFAQFPNAAIRFFDVSRYLAGFSLTTSNAHISVETYYRFIIQEALPFYSKLLYLDCDLVVNGDIAELYDTELGDNAIAAVPDIDFIGNLNMKNGERAEYVNKQLHMRDAYGYFQAGVLVMNLDRMREIHTVHEWLEIASKPGYLYNDQDILNVECEGLISYLDYSWNVMHNCAGRVNGVFDFAPADVYQAYMTSRKAPKIVHYAGFDKPWKNPWCDFAPMYWSYAQETPFVAQMVAAMSGVERPVPSEHHERAIAADSPIRKYVDVFAPTGSKQRELMKVMARKVQGKR

#### region 2 ####
1058334..1058347                   attL                                                                                 N/A                 CGTGCAGCAGTTCG
1072829..1073026                   PHAGE_Entero_EFC_1_NC_025453: hypothetical protein; BBBF_RS04315; phage(gi725950514)     7.56e-23            BifidobacteriumbifidumATCC29521JCM1255DSM20456MKYGMRKPSWKKSLSARTKGRATRAVKRALIPGYGKKGMGWLHPKRKLYNTVYKKTTFSLFDLFK
complement(1073288..1073806)       RarD protein; BBBF_RS04320                                                           N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MNWLLYIYLVVNGQALQTSIAYLTTPLLNVALGVGTFTAQSPTFPWMAIVLAASFSVYGLLKRYVPLDAIAQAENDKDMRQWEPLNSMLLISSTLAFARYDDKRMWAYDVIENAMTRNLGYSFSEEYDESAEDNEDTNEVGGQPGLRPNYGPTYYAAFVHDPEGNNIEVMLA
complement(1073867..1074058)       hypothetical protein; BBBF_RS04325                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MGIAALLVSNIGWGVLPLYWHALSGMNAISVLAYRLIATLVVMIALLMAFRRYRAYHRAIAAL
complement(1074209..1075129)       PHAGE_Mycoba_Littlee_NC_042322: baseplate hub subunit; BBBF_RS04330; phage(gi100101)     4.53e-10            BifidobacteriumbifidumATCC29521JCM1255DSM20456MPNITPSEDRTVETVHVPNNPTLTGLARLTRNVAYRTGADDLVMDIIAPQSTGDDDDRRYPTVVFVQGSAWTTPDRDYEIPQLSELAREGFVVATVNHRNASRDASAVFPAYLKDVKAAIRYLRANARQWHIDPERLGIWGTSSGGNTSLLVGLTADDPRYEDGSYATESDAVSFVVSCFPPTDMMEAIDAFGNEDDPFRLYYFGPFAAVVGATHETGLCDDVRRRAADMSPYLQVRDGVAYPPTMLLHGTADTVVPYRQSVKMHKRLLEHGVDSRLVLVDGAEHEHDFWSPQVFDMIFDFIRERC
1075370..1076470                   PHAGE_Mycoba_Send513_NC_042033: hypothetical protein; BBBF_RS04335; phage(gi100064)     3.83e-06            BifidobacteriumbifidumATCC29521JCM1255DSM20456MNPRRGPIVAGEKIQFTDRKGKKITDQLTAGGVTQTEHGIILHDDVIGRTEGVVVTTVTAKREAQVNADHPERDRNKPWKATRAIGGWQYAVMRPRLADYVLSMPRGAQIMYPKDIAQVIQLGDIRSGLNVLESGAGSGAMSVNLLDAVGESGRLTTIELRPEFARVADANATLYYGERPQWWDLKTGDFDSVAAGLPEHSFDRIVLDMLDPWNRLEQAYRVIAPGGVLIAYITTTTQMSRLVEALREAGHWTDPAIQETLERTWKAQGLAVRPDHAMIGHTGFLVVSRAMAEGFAALRKRDRATKDTTTDIDSLTPEQREAQLDDLELRDISDHKLRKVLRDLDLQTSRLSQDDQACKQGEATAI
1076590..1077147                   phosphohistidine phosphatase; BBBF_RS04340                                           N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MGVNLSKVEKKAKNYSHVLLVMRHAKAEPFNDKGDHDREITDKGEKQAKIVAKGLVGMKLLPDRVACSGAVRARQTLERMLKVFGDHPKVEYRQTLYDGGMQSVFDELANAKDKTRVLMVLGHEPTVSVSCQWLASSDSDMVKLDLLNLGMSTASVVVFGSDQPFSRWQVHDAELLAVLSPKDFD
1077403..1078623                   PHAGE_Mycoba_Jabbawokkie_NC_022069: integrase; BBBF_RS04345; phage(gi530547141)      2.98e-23            BifidobacteriumbifidumATCC29521JCM1255DSM20456MAGKTKNRRTGGSGSVFQDSKGRWHFRKDMGTDPATGRRRPPIEATGMVKSEARARFQAKIAEWERDGRLPSKDGPKTADYFERWMEEHRAAINPTTWRNESSWMRTMNAIIGDIRLNRLTANDINGMCRRLRRTRKSKTVNTYLAVLGAMLRTAKRDGLIADDPMENVGRMPEDRYERPILDVADPAKVIEAALAEPDPAVAVFDSPDEREKWALMFELAFTTGMRPGERYGLMPYQLELHHGIPVINVCQQAKPIPAGATIPDWMEAEHLDGAIWLTKPKTAKGVRTVPIPQGLWDRLWAHIVKWGVPSHGLVFTNLYGHPIRRDNEEKRWRRALKMAGLPYVDIYSARHWLATELAAAGASDEERTAIMGHTDIHTTSVYTHWRERRLAETLDAALPDLRDGQ
1078713..1079240                   PHAGE_Gordon_Kita_NC_031233: hypothetical protein; BBBF_RS04350; phage(gi100032)     2.71e-23            BifidobacteriumbifidumATCC29521JCM1255DSM20456MSKITIDNLSTPAAAATETLLKTVAPNGYLNLPVDPSRVAELLGIQPQKLMLDPNVDGLLVKDKSGEPFKAVSDAYASPQRQRFTTAHEIGHWVHKYQNTPDDAVLGRVESRDDTLSKGIDPEEIWANRFAAALLMPAAIVRRHWGEGRTRDELAEMFGVSRRSMDVRIATLGLQ
1079237..1079728                   PHAGE_Gordon_Kita_NC_031233: replication and recombination DNA helicase; BBBF_RS04355; phage(gi100033)     2.08e-07            BifidobacteriumbifidumATCC29521JCM1255DSM20456MSQTEQASSETDEALAMFNRASAATSHVPVAHGSAPDGGEGVDGSADEATGTASSFNARRRENAALRKLDAKNTRREQENQLRKEVATWSLWFVLTQLVITNTTIVAYIVTMLVLKQYVPTEVLITWLSSTIVEIIGILWVIARSLFPFHDRHRDTKGEKHKS
complement(1079792..1080298)       PHAGE_Coryne_Poushou_NC_042139: RecA-like recombination protein; BBBF_RS04360; phage(gi100035)     3.29e-05            BifidobacteriumbifidumATCC29521JCM1255DSM20456MQKGSRQTGSLSIGSTQHASAFGAANQAGSFHITGGCSLDSFLDRAGREHIRVIEQPLPNGLCGAWHEASRTIFLHDRLNQRQRRCTLCHELIHARHHDPGCGSQYGIKCERRCRRETALALISPVDYGMAETVYEGNAWMMAVELGVTIQVLEDYRQLLYDSGVCAQ
complement(1080423..1081451)       DNA-binding protein; BBBF_RS04365                                                    N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MSEEFDPDNRGQVILYRANGVNVPVEVTYWRRTFWMPQKNIARLFGVNVPAVSKHLANIYAEGELAESATMSEMEIVRNEGGRTVRRTIRFYSLDAIIAVGYRVSSPQATAFRQWATSVLHEYMIKGFALNDDMLKNGNTFGEDYFKELLARVREIRTSEKRLYQQVLAIFQEICTDYDKDSGIAREFYQNMQNRFHYAAHGHTAPEIITQRVDATKPHMGLTTWHGSPNGRIHKSDVTVAKNYLDENELTRLNRLTSGFLDMIENRVAARLTTTMPEFIQLVSQYIQLSGGATLTGKGTVTRKQADRKAAEEYAKFNAAQPYDFEEFAKGIDGGRHDGIGR
complement(1081496..1081897)       hypothetical protein; BBBF_RS04370                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MLGMGSIAKNEVTEDSKRIIDICRDLVKRSGITNAEFYKKSGMRNNYWHVRLRYEAPLTTSDVEHIASTFGLTSLDIYTRALGSDAARAYEARERQNQITDDLVEPRFEDLPPQELAASRDRNRDMESETPDE
1082021..1082266                   PHAGE_Mycoba_Xeno_NC_031243: RecA-like recombination protein; BBBF_RS04375; phage(gi100035)     1.39e-05            BifidobacteriumbifidumATCC29521JCM1255DSM20456MSETETIARNLSGELARHRKTQAALAKELGMSEKTVSERLGGKGSFNTEQLEKTATMLGMSLYQLMIKLLQPIDGIKQIKP
complement(1082651..1083187)       hypothetical protein; BBBF_RS04380                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MLDFIVHWILLRIVFMIDWFSEHGVELAGFVFTLVVTVVGWAIEHRSSKEQNKEREDDIRFLREQLDSLRRQATTLEEQTAMQRADHDKPPFSDAEWICGSLRRIRIEGSRDVHVESVTPPTDTYMFHLNTHLPDDFAPSETIEYVISDPGPVELFWRWADEPNMSLRRLRRVSYKPV
1083167..1083961                   PHAGE_Paenib_Shelly_NC_041909: RNA polymerase binding protein; BBBF_RS04385; phage(gi100043)     3.92e-75            BifidobacteriumbifidumATCC29521JCM1255DSM20456MNNEIQQFDFKGASLRTLTDEAGEPWFVLKDCMSILDLGNPTETVKMFDEDEFSTAEVIDSIGRRQQAYIISEPGLYRLVMRSRKPEAKEFQRWVTHEVLPAIRKTGGYIPTTDADDDMTILAKAVMIGQRTMEAQKQKIAEQQTRIVELEPKARFADAVAASDGTCLVGELAKMLRQNGMDIGQNRLFRLLQADGYLGKSGSNRNVPTQRAMDLGLFRIKETTVTHADGHTTVSRTPKVTGKGQRYFIDRYWGRAQPTLEAGA
1098828..1098841                   attR                                                                                 N/A                 CGTGCAGCAGTTCG

#### region 3 ####
1086540..1087070                   PHAGE_Arthro_Galaxy_NC_041876: hypothetical protein; BBBF_RS04420; phage(gi100053)     1.41e-55            BifidobacteriumbifidumATCC29521JCM1255DSM20456MAGETIITVVGNLTADPELRSTKNGRSVAGFTIASTPRTFDRQSQQWVDGDALFLRCTVWGDLAEHCASSLAKGMRVVAQGRLTQHSWEDEQHQKRSSVELQVDEIGPSLRYATAQVAKAQRGTAGAYGNPYSAPAGYTGGAAAADSLPPSDPWGTDQATSSSSFGSFGQSAEPEF
1087089..1088486                   PHAGE_Gordon_Nyceirae_NC_031004: late promoter transcription; BBBF_RS04425; phage(gi100046)     2.25e-27            BifidobacteriumbifidumATCC29521JCM1255DSM20456MDITIENLQVDDLHANPNNPRKQVGDVDELASSIRSQGIKQPLLVTPTGETGIDGHKQYRVVIGHRRLAAARQAGLSTVPAIVEEMDARREREIMLVENTQRSDLTPIEEADGYQGLLDLGVHVKEMAEKTGRSDRFVRRRLKIARIPQETRDMSADFSQLSLDQLDKLAEFESDPDMQRELARADDFDCTYQRLCRERRKTIWHDKALEALAKAGIKVESLPDGKNFWNWHPHGYKAAHSFSDINTDFWTSFIRESDWPEARVYSYEYWFCTYTPISADELEKDKAKTDKDNAIKARGRELNRQAREFEAIAKANRTAWLKANLRTLTHEHAETGICRLALADTVGWRSVFPYQSYKGEDVIRELIAFGWSLPITEHDDEHWSLECRENLDSIRMVLKDRPLRILDVLAARWESNIGWNYWRSRHGVDDMCCWYDVLERIGYRVSEDERKALKGAYLDGGDDES
1088483..1089376                   PHAGE_Arthro_Abidatro_NC_042002: late promoter transcription; BBBF_RS04430; phage(gi100046)     1.08e-08            BifidobacteriumbifidumATCC29521JCM1255DSM20456MSIQALTWVIYGVASDIKHADFRTLLVLADHADPQGMGAYPSRSTISRLTGYSVRTVSYALKSLESSGLISRGDQRIVSNLGGYKPTVWNLNMSRGAKTAPLKNAETPVQHDCTPAVQTGVQKTRTGVQTGVQHDCTRTISKEEPYIEPRESNARARKPIPIPADWKPSEEHRALADRLGIDCDIEADKFRDRALDSGARSADWNAKYRNWLVKGKERGFATPKDSNARRRFTWGSEEVKRVLGPISCEGTDTYMELACKVADLLNQGLDPNMLRRQLANVPDNVLAEQLFEQEAAA
1089373..1089564                   hypothetical protein; BBBF_RS04435                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MNDMTIAHMTGILTSAIQAADRLELDALKSPALADMDLDRIRDIKRDCSTCINLLNQLGRERR
1089561..1089965                   PHAGE_Arthro_Abidatro_NC_042002: hypothetical protein; BBBF_RS04440; phage(gi100030)     2.97e-13            BifidobacteriumbifidumATCC29521JCM1255DSM20456MSDRQFQESKRIALQRQGWHCLRCGTNIHDPSLWPGRSGHHRQLRRRADPAVRDLPCNIVELCGSGTTGCHGWAHAHPAEAERFGYIIPSWRDPLSVPIRDWNGDWWWLLSDGTAQRLTQIEIIEWQSDWKEQS
1089962..1090543                   oligoribonuclease; BBBF_RS04445                                                      N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MRKQDKDLNVKPEALLWLDFETTGTDRDGSLPLEVGMECTDVLGEHSYGSLHRIIRPDYLDLLDMSPIVFSMHTDNGLLFELSNGSAGNDCVGAVANAVEEYLESLSQRFTLVPAGTNVDFDIDFLKRLDLNPDRWLSYRKFDLTTLRRYLRFIDCPEDPYKTHAGTHRVRDCIRRDINDYIRYRKLLKGARR
1090540..1090818                   hypothetical protein; BBBF_RS04450                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MTTKGKTTKTVSKETRPRKWRKPVPCPTCGSRNIRFDPFARAVNRKTSAIRQFWVCSCERHGILILTRHTDLKEAIRAWNKEATRQGRKHSK
1090815..1091120                   hypothetical protein; BBBF_RS04455                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MRKRKPLALAGIGLTAITMFLLTPVFLLALAGCGSTPHEPEDSTTESATRSQCSSDSSKFQTCTVTMPDTRRVTCVFYNGYTEAAMSCDWAHADGADKVED
1091123..1091320                   hypothetical protein; BBBF_RS04460                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MAVTKRKAEMVVTWHERGVDIETTCRMLGVTPQEASAIIRQHAAERERRERAERMRPKFIEPPMF
1091364..1092113                   hypothetical protein; BBBF_RS04465                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MDRNCQNCDKPVEESWTLCKTCRRGYARLLHRLRVNLHRLQSVARREYRLTEPGNGGRPQGGDAPAPVDLHAVDLLDQTEQAIEQACADAGTWLGRWQWLAKRAPVILPLLCRASNAGWHMRRLTRACERIERIVDRMPRSRRIVGMCPECGREVLAAKGETLRLCKCGNPVNVTELREQSRAKAEAMHITKTPAGMSQWLRENYGYEVSRKTITDALRRGKLPGSKPVEGGYWEFSIREIVAFAMSKA
1092134..1092343                   PHAGE_Clostr_phiCTC2B_NC_030951: hypothetical protein; BBBF_RS04470; phage(gi100029)     4.98e-12            BifidobacteriumbifidumATCC29521JCM1255DSM20456MIRGVRFKEIEKILRKDGWRLYSQSGSHCQYTHPDKPGRVTVPKHSGDLAPFTVRSIWKQAGINERRIK
1092340..1092750                   PHAGE_Paenib_Shelly_NC_041909: endonuclease II; BBBF_RS04475; phage(gi100065)        9.90e-25            BifidobacteriumbifidumATCC29521JCM1255DSM20456MKLVYPVVLYPSGVPGGYTVLCPDMPGLVTEGRNLPEALDMAVDAASGWVLGELEEGRHEPHATNIADVKPDEPGGIVTLISLDMDSYAEKYGRKSVRKNVTIPAWLDTFGEQAGINYSQVLREGLERRYNDLQNA
1092752..1092919                   transcriptional regulator; BBBF_RS04480                                              N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MPTPQFTEWHTAEHLENEEDIRLYLDACKAYDDPRLMSFAQREAAKARENFSKRE
complement(1093072..1093275)       PHAGE_Mycoba_PG1_NC_005259: loader of DNA helicase; BBBF_RS04485; phage(gi100045)     4.25e-14            BifidobacteriumbifidumATCC29521JCM1255DSM20456MATEYLGVKQVAERLGITSGGLLNLKLPEPDAMIGRTRGWLPETIDGWNAKRPGRGVGGGRPRKHAD
complement(1093265..1093423)       hypothetical protein; BBBF_RS04490                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MSKSRTLGIMSMLFAVVSAMFAASGQPYGAAGFAVAAGLAGLFAGWRSDDGD
complement(1093488..1093616)       hypothetical protein; BBBF_RS04495                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MELRDWMQLITSWVAIAVTIWIEVRRDKPDKKGRSKRKRRKK
1093726..1094094                   PHAGE_Mycoba_Astro_NC_042337: protector from prophage-induced early lysis; BBBF_RS04500; phage(gi100001)     4.04e-16            BifidobacteriumbifidumATCC29521JCM1255DSM20456MPSASRRERWYTSDRRYRLPSDWGRRKAAVRARARGRCQAASHAPGCNGVGTECDHIVAGDDHDLDNLQWLSHECHKAKTERENAERNRRRKLMRLHPSERQPGLLDWTPRRVGGDSPATPV
1094380..1094967                   PHAGE_Coryne_Poushou_NC_042139: protector from prophage-induced early lysis; BBBF_RS04505; phage(gi100001)     1.20e-23            BifidobacteriumbifidumATCC29521JCM1255DSM20456MDAAGRGRPRRYCSDRCRTAAMRERRAGRNAIPYEMTHADRWLRWKRVTRGDGTTKRPITIAGRPASSTDPATWCAWWDALGSTAGDGLGFALGGGFACIDLDHCYDRRNHLTDWAKMLLAPVEGRTYIETSPSGDGLHIWGRCAPRAGVRARGLVTAEAYSRDRYMTVTGRPWHHAPATLADLTFLFDVIERLR
1094987..1095376                   PHAGE_Mycoba_Gardann_NC_031124: hypothetical protein; BBBF_RS04510; phage(gi100002)     8.14e-07            BifidobacteriumbifidumATCC29521JCM1255DSM20456MPTPKPTKHRMPTGLTRDGRGQRLWRDLTDRWEFTEAEYRDLENACHTADRIVKERRAIGDDYTVEGSQGQIVAHPLLAQLRADENHLSNLLNRLDMPEPEEQAAADTPGTRSARMRAVADSRWSKAFG
1095376..1097178                   PHAGE_Strept_Aaronocolus_NC_042051: hypothetical protein; BBBF_RS04515; phage(gi100006)     6.17e-135           BifidobacteriumbifidumATCC29521JCM1255DSM20456MARLRNDNAAALIPDRTRELAEIADWYRRALADEPARRWNTGPTLIGPTWKRGADGGWLLPEHTLGWDFLAWCGYWLRDSKARTPWKWTLEQARFWLWFYALDDEGRPLHDNAVLQRLKGWGKDPMAAGGAVASCFAPLTFDHWDPRTGEPVGREEPNAWVQVCAVSQEQTKNTMKLLPSLIPMETRRHYGIQLGKLNMYALGDSRQIEAVTSSPLALEGGRPTFLIRNETQNWNSSNGGHDMDGVLSGNAAKSADGVNAKMLDICNAYRDGEDSVAQRVREAWEGTQGDPDSPDKGLRPKYMDFGLLYDSIEAAPDTPMTEESIPKVIADVRGDSDWLSTRRILKEIINPKNPVSESRRKWFNQCQAPEDAYVTSQEWDANEHPELELGDGETIAMFLDCSLTDDATALVACRISDGFTKPLGLWQRPPGKRGDAWKVPREGVDDTVREAMRRYHVVAFWGDPSHVLDDETGLHYWDPLFDAWHRDYGRRLRLWARPEGRDRHAVMFDMARLDVQKRFVAYVDQAYTAIADKDFPHDGDARLRRHMLNARRQPTRAGMSIAKEGRESKRKIDLAFCAIAARGMRREYLNARKQGGGQIW
1097172..1098578                   PHAGE_Mycoba_Joedirt_NC_042313: DNA topoisomerase II large subunit; BBBF_RS04520; phage(gi100005)     2.34e-84            BifidobacteriumbifidumATCC29521JCM1255DSM20456MVNAYENETQALAALTGQALPAWNAELPRLDRIDRWWRWNPKPIRLKKATAEHRMLRDMGHTPWLRLVVTTLAQTLYLEGVDVPGDDDNHTRAREFWQPWDRSRMTARQIPLHQAAIAYGTAYETVRAANGPDGIRARIECWSPREAIALYDDPARDTYPQLFMRRRRLNETRESLELWDAYNIWTWIHADGAWTFSDATPHNATDPNGQPVCPAIRFTNQIDLEGRTPGEVEPYIALANRLNKDNYDRMLAQHYNSWRVRTATGLDMTELSDAQREDRKAKLAQEDILAGGPDVKFGTLPETSLDNLVNARQADVEELAAVSQTPTTAFGKMVNVGDAGIEESHAGFYAKRNERRKSFGVGHLDALRLAAGIEGRTEDAANFDLTPLWEDTDTRTVSQAVDALGKASKMLGVPQEELWDMIPGVTKTRADSWRAWKENHPDADALAVQAYASQLAPATTGGDDGLDR
1098562..1099776                   PHAGE_Propio_PHL041M10_NC_027391: hypothetical protein; BBBF_RS04525; phage(gi849255746)     4.74e-21            BifidobacteriumbifidumATCC29521JCM1255DSM20456MASTGKGALLTDQHRRRQVSLAITADSQARRAWDATLDLNDLTGTQPIWKRTMLNLIQTWWRISEQAALAYLPQYREAETGEGPGIEIGVQQFDRRRAGEKLDWLGSTNVKWHLASGDTPEDAYRKARELFLGVFHEAVLTGGRSAIEHWAQQDTRAIGWRRVSDGDPCAFCAMLVTRGPVYTSAKKAGLRASDGKKYHPHCGCTVEVVYGDWEPTQQEQQWIDEYYKAAESLPERTPRTAQDILPIMRRNGAFRDSRSIRGTKTALAARRAERYDRKIAGLRDKTLNHILRGEGDGRRGGHLYGTGVAGKTEFPQQWDERRIATAINRTIKTPDWHIDAPDPRALHRFGKTIDGVQIEVKAYLQDGEYVIDRAYPVGGEGVTRNTENGRIDVKASRSKKWRQP
1099761..1100033                   hypothetical protein; BBBF_RS04530                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MEATMSAASERMTRLSLESLKVVEGLNPDIEEDAMEEIDCGEWDGAIMDALDLAHDRKDLWPKFPEEVKAMTRDPEWPDLHRFAYMFDRT
1100231..1100315                   tRNA                                                                                 N/A                 GGCGGGTTGCCGGAGCGGTCGAACGGGCCCGACTGTAAATCGGGCGCATCACGCCACGCAGGTTCGAATCCTGCGCCCGCCACAA
1100341..1100904                   hypothetical protein; BBBF_RS04540                                                   N/A                 BifidobacteriumbifidumATCC29521JCM1255DSM20456MSDDSTLENQTNESDEAAITKGTEPDSANDDADKAPWEKNGEEFSPEKAWNLIRNLRADNAKLKESDDAKAVKLREIEDANLSEKEKADRDLKEAREQLDAIRTQKAWAEAMAEHQCLTKEDFDLIGAGSPQEVREKAAKLAARLDAQAVSKTDSNHINPLLRADPTGGTDPTSKKTDDWMRSALAR
1100934..1101890                   PHAGE_Microb_Pikmin_NC_042119: hypothetical protein; BBBF_RS04545; phage(gi100006)     1.36e-55            BifidobacteriumbifidumATCC29521JCM1255DSM20456MADNFSSQILRGDLGGALIPDEISQEIIQTLPQSSVLLTRARRVPMSSKKKTQPVLASLPEAYWVSEGGLKQTSKTGWEDVQITAEELAVIVPIPDSVVDDAKINLWDTVKPLIAEAMGKKIDQAGIFGVDKPSTWGNDILAGATAAGTNVASGTGVDLADDIAMIGQKLSEKGFAVNGFASQPGLNWQLARLRDANGQPIYTPSVAAGNPASLYGYPLNEVANGAWDTTKAMLLAADWTKFVVGVRQDITYKVFDQGVISDTAGNVVYNLMQQDAQAMRVVMRVGFAVANPLTRIAAKGSQYPAGFLTPAASRKAGK
