gi|00000000|ref|NC_000000|  Comamonadaceae bacterium A1 DNA, complete genome. [asmbl_id: NC_000000].2574013, gc%: 66.04%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
369059..369649                     PHAGE_Vibrio_12A4_NC_021068: oligoribonuclease; SRAA_RS01760; phage(gi481019105)     1.47e-28            MQPMQNPAPPLAAAAELHHSDQNLVWIDCEMSGLDPDKERLLEIAVVVTGPHLSPRIDGPVLVLQQSEALLAAMDNWNKGTHGKSGLLDKVRASRLSEAEAEAELLAFLRRYVPKGGSPMCGNSIGQDRRFLLKYMPKLEDYFHYRNLDVSTLKELAKRWRPEVYAAFKKQQRHTALADVHESIDELEHYRQHLLR
369722..370018                     PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; SRAA_RS01765; phage(gi100020)     1.46e-33            MFELLQTEAFRKWRSRLKDGRARTAIAARLDRLAFGHVGDAEPVGKGVSELRIHYGPGYRVYFQRRGNQIIVLLCGGDKASQVRDIATALRLAEQWSE
370021..370314                     PHAGE_Brucel_BiPBO1_NC_031264: general stress protein; SRAA_RS01770; phage(gi100019)     1.51e-17            MSEKLSPYDPAEDLSSDQAIADFMAAALQTQDTAYISHALGVVARAKGMAQIANQTGLSREQLYRSFSAHGNPTLRSTLAVMKALGIELSAKPVAGH
370639..372027                     PHAGE_Lister_B025_NC_009812: gp58; SRAA_RS01775; phage(gi157325275)                  1.69e-06            MTDIAYTPEAADAATPAAATPVVAATPVATPTAPSAFAALGLAQPLLNAVADLGFTQPTLVQQAVIPKAMQAEGTGRSGAQAFTDLMVSSQTGSGKTAAFLLPVLHTLLVQMEQQEAAERADWERQQAEAAAAGQPVPKRAKRQNPLLARHFKPTVPGALVLCPTRELAQQVANDAIDLVQHCRGLRIANVVGGMPYQMQIAKLQNANLVVATPGRLLDLQRSGQLVLDQVQFLVVDEADRMLDLGFADDLAEVNRLTAARRQTMMFSATFAPRIQSLATRVMREPQRVQIDTPQDRHVNIEQRLYWCDSPEHKRQLLDHWLRDASIGQAIVFSSTQIECDALAADLQQAGFAAVALHGALSQGLRNRRLMALRSGQVQILVATDVAARGIDVPSITHVFNYGLPMKAEDYTHRIGRTGRAGRQGMAVTMAEMRDRRKIGDIEAFSQQVIDTHTIVGMEPRKQ
372531..373319                     chemotaxis protein MotA; SRAA_RS01780                                                N/A                 MNPSTLIGMVASVLLLVVVMIFAAEDPLLFIDLPGLGIVLFGTLAATFMSYPLREVLRVFQLFGTVIRNERLYTQSAIDELVDVSRLWMRDDLAAVERALKNVNNPFLRTGVQLVIERTPEADILDLMQWRISRLRAKETAEAQLFRVMASYAPAFGMIGTLVGLVNMMDILGTGDMLVIGGHLAVALMTTFYGILLANLIFKPVAVKLERRTEQRVVLMNMVMQGIAMMTARRSPSLMRETLKSFAAHHEDEIFDGPQATPK
373499..374281                     PHAGE_Bacill_G_NC_023719: gp249; SRAA_RS01785; phage(gi593777705)                    1.43e-07            MGPNRSISALHSGRFERWHVDPVPVQEEEAWLITYLDMMTLLLAMLVVMLAFSEPVSEAFRGERREIALDRLYPREQAAADAGTTILPPVPLPHPATAPARLEGDPVDIRAAPVPPAPPALNVGDLGQNVDVVTDAKGVTRFRISSELLFAPGQAALTPAGQRVMDELLPVLNQAIGHTIVVEGHTDNVPIATARFPSNWELAAGRAGAVVRHLETRGVNPMRLRATGVADTQPLADNATAPGRAQNRRVEIVLEAPPVQ
374329..376737                     PHAGE_Bacill_0305phi8_36_NC_009760: PcrA helicase; SRAA_RS01790; phage(gi156564011)     1.08e-121           MIHRFAPESAPSPAYTPSPTSALDQPSPLLQSLNPEQLAAVTLGPEPALILAGAGSGKTRVLTTRIAWLLSTGQVGPAGVLAVTFTNKAAKEMLTRLAALLPLNVRGMWIGTFHGLCHRMLRAHCKLLNLPATFQILDMQDQLSAIKRLHKQLALDEERFKPKELQWFINACKEEGQRAHQVPARDAEQRHKIEFYRLYEEQCQREGVLDFGELLLRSFELLRDHDPVREHYQRRFRHILVDEFQDTNRLQYAWLKLLAGRMEGNQFVPAGNAVLAVGDDDQSIYAFRGARVGNMADFVREFGVRQQIKLEQNYRSQAHILEAANRLIEHNQGRLGKNLRTDQGTGEPLRVYEAPSDYAEANWIVDEVRQLTGRDGLPAHQVALLYRSNAQSRVLETALFNAGLPYRVYGGLRFFERAEIKHALAYLRLLDNPADDTSLLRVLNFPPRGIGARSVEALQAAAQAAGCSLHDAASAVPGRAGASLGAFVALLDALRERCQGLALRQIVEQVLQHSGLLAHYRAERDASERVENLEELLNAAESFVMQEGFGRDAVALPLDETAAAEAGAAANAGNPPDEEPPSGETLSPLQAFLSHAALEAGDNQAQSGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHDNASSSAQALEEERRLMYVAITRARQRLYLSHAQTRMLHGQTRYHPRSRFLDELPPQCLQWLSPKPGAVAGLARGSTGLQPAWGRSALVPEVPGVPGLPSRSAPATADTHGIRSGMAVFHQKFGQGKVLAVEGRGDDARAHVNFTRHGSKWLALAVAKLTPL

#### region 2 ####
518097..518417                     PHAGE_Lactob_PLE3_NC_031125: hypothetical protein; SRAA_RS02520; phage(gi100036)     2.89e-05            MTTTKRKSRILDEVHETARGLHGAGLISKRRMGEFDALCHLGVHELVPQQIRALREQAHLSQSVFAAVLNTSVSTVQKWEAGDKKPSGPSLKLLNLIERKGLEAVL
complement(518539..519990)         hypothetical protein; SRAA_RS02525                                                   N/A                 MPHPSLIRPHLGTLLAAWLLLALAASMPLLQLQPPLAWHDQQRLVQVALLALAPLLLLSPYTAPWSARPLSVGLLAAVLGLGLASAWAAAHPAWALLEISLLLGCLGLALAVRGLRLQAPGLDGALLLAAFMLCAGIGLQFLVAYASALAQPELGLHVLAMLGGFSNPRFFGQVATLLLPLLLLGWAFAPAQWPHRWAWLLGALAVLTWAVVLSTGTRGTVLALGTSAVLLACLGPLGRRVALGLLLTGLLGAGLSGLLFTVLPPLLLADPTTFHHPASRLTFSLSGREVIWSLAWDMIRQQPLLGVGPMHFAAHPNPIAAHPHNAPLQGAAEWGLPAALLLLAWLGRAYWQLLRRCHGAALPLAGDTHPALRMALLASLTGAATQSLVDGVLVMPTTLVWLCLLAGWAWALCECDAPLQPASWRARLWLALPFLLASLYLVWVVAQQLPYLHWPEHSGWRPIGLGLSPFPRFWSHGMIEPSP
complement(520079..520504)         PHAGE_Deftia_phiW_14_NC_013697: hypothetical protein; SRAA_RS02530; phage(gi282599056)     2.54e-05            MNRSQQGFTLIELLTVVTIIGILAAIALPLYQNFSARSQVTAGLADIRSGVTAFESGIHSELTGSPDAVALGLPASTLRCGSIAVSGAWSDASGQRIACTLNGSPQVVGRFVRFTRNGTGQWVCESSVAAPLLPVGCALGS
complement(520717..521142)         PHAGE_Acinet_vB_AbaM_Acibel004_NC_025462: type IV pilus assembly protein; SRAA_RS02535; phage(gi712915854)     7.58e-08            MKRVQQGFTLIELMIVVAIIGILAAIALPAFQNYTARSQATAGLADIRGGVTAFEEGIQRGDRTGNANLTDIGLAATTTRCAITLPTAGWTLASGQQIQCIINGNPSVRGDYIRLTRATDGQWACTTNVDEVHRPVGCTAS
complement(521686..522006)         PHAGE_Brucel_BiPBO1_NC_031264: general stress protein; SRAA_RS02540; phage(gi100019)     3.89e-24            MSKTITKPWDPAEYLNTQEDMAAYLEAALEAGDPALVAAALGDIAKAKGMSQIARDAGLGRESLYKALAPSGNPEFATVMKVVSALGLQLHASPAGTRAGTLPHSA
complement(522016..522306)         PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; SRAA_RS02545; phage(gi100020)     1.02e-40            MIEVRQTLAYAEWYGGLRDRQAKARIDIRIRRLSLGNPGDVKPVGEGVSELRIDHGPGYRVYFVQQGAVLIVLLAGGDKSSQDLDIRLAKTLAKQL
complement(522364..522588)         PHAGE_Mycoba_Che9c_NC_004683: gp31; SRAA_RS02550; phage(gi29566140)                  8.19e-06            MGSLPVLKPQEVVRHLERLGFAESRQKGSHKQFRHPDGRATTVPFHKGQDISPVLLRKIAQDINVLVEELLGRQ
complement(522588..522797)         HicB family protein; SRAA_RS02555                                                    N/A                 MKTFTAIVEKCMETGLYVGYVPGFPGAHTQGTSLDELQQNLQEVVSMLLEDGEPVLDAQFVGTQQLAIA
complement(523199..523486)         PHAGE_Entero_VT2phi_272_NC_028656: hypothetical protein; SRAA_RS02560; phage(gi966197800)     4.77e-19            MHNPPHPGEFITEIYLEPNAISGRELAQNLDVAPSTLNRLLRGTSRVTPEMALRLSKAVGRSAESWLAMQDAHYLWIARQRIDLQRVGKLNLAAA
523568..524008                     hypothetical protein; SRAA_RS02565                                                   N/A                 MKPRYSQYNPKRKLLTPAQAQARADELGRLADRVRYGGNPEHKKNPGDFGLTPPSDPRQGKSLCDAAQIFRRDEAVKLLQAGLRSGLVSDRMEGEWPKNVWSVTDYGDALEAQLENPELGVYHGYPMPETDPLSHEVLRRWALRNG
524001..525332                     hypothetical protein; SRAA_RS02570                                                   N/A                 MAELRINAKWMAAASGRPEVSATAALLDICVDKLCLTRNQDTWAETVRDNVFASAYPLAMWFVASWWRLSHEPLPTQPPSHDWRMVHELGAANHGFVWPRVVFVPDGEAIFVWAEAAMKPDQSVQYLQALEEPGLIPLDGFQLGVQRFVQCVLARLNAKQLAGTNLGQLWAVLQEDLADPESVRRRKLEAELGFDPEECPEHALNAALQWEGLVGAAALSELAPAIAASGYSPELAILGQFASASGIVGAPAVSPGSIEHRDQGAPWERAVHDAHALRRVLGNVSAPISNRDLHEVLGLRHADLDNWSAPEERSPVAVAMPIQGHRLKFVPRKRNVVGRRFELARFLGEYMRPVADKERWLVSTDLGTAPQKYQRAFAAEFLCPFDALKSFLNGDFSSYARAEAAEQFEVSEQLVTSLLLNNGCIHQHGSWGFPYQIGAQTRP
525438..526232                     CDP-diacylglycerol--serine O-phosphatidyltransferase; SRAA_RS02575                   N/A                 MAATSGAAALPRRHKGIYVLPNLITLAGLFGGFYAVVMAMNGRFDLATLGIFAAMVLDSLDGRVARLTRSQSAFGEQMDSLADMVSFGAAPALVAYEWALYDLGRWGWIAAFVYCACAALRLARFNVNTAVVDRRYFQGLPSPAAAALVAGFIWLATEFELDPQTLAWPMFALMLYAGLTMVSNVPFYSFKDLNIKRSVPFAVIVLVALGIAVVNIHPPLVLFGLIAGYAFSGYAVYGWRKARGQPTSVVSTSTHDPDEKDLHH
526280..526579                     PHAGE_Brucel_BiPBO1_NC_031264: hypothetical protein; SRAA_RS02580; phage(gi100020)     7.87e-24            MNTFERSEQFDAWLLGLKDKLGRARIALRIRSAEHGNFGDCEPVGGGVSEMRVHVGPGYRAYFTRRAERTYLLLVGGDKASQKRDIKRAIEMARGLDEE

#### region 3 ####
complement(1352474..1353409)       PHAGE_Cronob_phiES15_NC_018454: putative serine/threonine phosphatase; SRAA_RS06335; phage(gi401817585)     1.13e-05            MKFSVFQASSQGGRDDNEDRLGYTYTHEAILLTLADGMGGYSGGEQAAEIAVRVFTQSFLAQARPRLAHPPAFLQQTLLQANRAIVDYARSNDLSEQPRTTLVAALLQDGQLWAVHAGDSRLYGLRAERVWFRTRDHSFQDKPELFQQPSRLANRNLLFTCLGSQSTPLFDHTGPLALQAGDQLLLCSDGLWSTQSDADLVAALQGRALRHSVPALVRQALHKAGPRSDNVSLLALQWGGDGAAATGPGVAQADLFEGSSISSFGQVVDLGPDAQPTPGEGDDVFDLERIEQSIDEINAAIRRTALRRNRP
complement(1353406..1354419)       PHAGE_Entero_Min27_NC_010237: serine/threonine kinase; SRAA_RS06340; phage(gi170783632)     1.08e-13            MSKTKPAPLPPETLIGGYRVLRLLASGGFGLVYLALDPAGQKVALKEYLPASLALRAPGELLPQVPPEKLSLYRLGLKSFFEEGRALAQISHPSVVGVRHFFRENETVYMVMDLLEGASLQEFIVTARALKRKKIFREATIRSLYDELLRGLRIVHQHKMLHLDIKPANIFITDANKPILIDFGAAREVLSAEGNFVRPMYTPGFAGPEMYQRGAQLGPWTDMYAVGACLYSCMQGYPPHDAPQRLEKDRLPLAMTRLRGLYSDNLIEVVQWCMALQATARPQSVFELQKELQREPTPVFSPPSLADKLRQQVGRFWPGSSKLPVTPSGRSSFHPES
1354486..1355385                   hypothetical protein; SRAA_RS06345                                                   N/A                 MTGYACATQRLRPTEAAPHSPELVLGVEIRSVNSRFLDLGFRLGDELRACEPALRERLQASLKRGKVELRAWVEGRTEAAWRAPNSAELQKLLSMQDQIRTWLPHARELSVAELLQLLARTPPLPAALTEAASSLAAQVLDELRHARQREGERLVQMLHERLAQLQALAQQAQPLVPAQVEQQRLRFLERWNEAMGHTGADSSPAPAAAHERALTEATAYALRLDVAEELTRLQSHLSEIGDVLQRGGEVGKRLDFLIQELQREANTLGSKSSSLTLTRIAVEMKVLIEQMREQVQNLE
1355388..1356008                   PHAGE_Liberi_SC2_NC_019550: guanylate kinase; SRAA_RS06350; phage(gi423262548)       3.29e-19            MDYPGNLYVVCAASGTGKSSLVKAWRQADALLALSISHTTRAPRGQERNGREYHFVSAQTFDQLLAAGAFVEWAHVHGQRYGTSHLALAEALRNGADLVLEIDYQGALQIKQQFPHAALIFVLPPSWEELRTRLQRRAEDSAEVIELRLRNAVEEVAQVDRFDFVIINDSFERALSDLQSIAHAQRLRVATQRRRRADTFSALQIA
1356050..1356253                   DNA-directed RNA polymerase subunit omega; SRAA_RS06355                              N/A                 MARITVEDCLEKIPNRFQLVLAATYRARMLNQGHTPKVESKNKSVVTALREIAEGKIGLEMLKKVPS
1356348..1358606                   PHAGE_Bacill_vB_BanS_Tsamsa_NC_023007: hypothetical protein; SRAA_RS06360; phage(gi564292599)     6.47e-12            MSDDVIASPRANAPMAPSAAVAASFSALESALDYLNAAEIEQVRLAFRFADQAHSGQLRNNGDPYVTHPIAVALQCTEWKLDAQALCAALMHDVLEDCGCSKADLVQQFGPQVADLVDGLTKLDKLEFDSREQNQAESFRKMLLAMARDVRVILIKLADRTHNMRTLGDMPRRKWSRISTETLEIYAPIAHRLGLNNNYRELQDLAFKHLHPWRYQALSKALEKSRNRRQDLVAKVRGEVEGALLRHGLEARIVGREKTLFSIYNKMDSKHLSFAQVTDLYGFRVILPELLDCYRALGILHQIYKPLPDKFRDYIAIAKMNGYQSLHTTLVGPFGANIEFQLRTPAMDVVAESGVAAHWLYKASAADGPVQQEPDARWLQSLLDIQQVSQDAAEFWDHIKIDLFPDSVYVFTPKSRILTLAHGATVVDFAYTIHSDVGNRAIGAKINGEQVPLSTRLKNGDMVEILTSPHAQPNPSWLGFVKTGRARSKIRHHLKTLALEESHALGERLLLQALRAEGFIGLPDETDAAHQATWDKLLRFTGNRNRRELLTDLGLGKRIAGMVSKKLAALLGEIGHKPDVLLISQERYGIAAEDQASQGVVSLDGSEGASVQYADCCLPIPGDRIVGYLGKGDGLVVHTDDCPTGKRLLHRDSERFLEVEWAEEPTRSFETSVLVTVNNGTGVLAKVAAALAAAEADITHLHMGDERGQSTIDLRFALAVRDRVHLARVLRQLKRTPAVVRAQRLRPQRPGS
complement(1358545..1359144)       transcription elongation factor GreB; SRAA_RS06365                                   N/A                 MSKAFTKETDHDDDDDATAGAAPLPAGGKNYITPAGHARLRAELLHLLDVERPRVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRIRFLGKRLEIAVVVDPALQHGSEQVFFGASVVFARADGSQTCVTILGIDEAEPSLGQISWVAPVAQALLKARVGDEVRLRTPAGWELLEVIEVSYPAAGAAGAAPAPPPACA
1359275..1360162                   PHAGE_Mycoba_Obama12_NC_023577: hydrolase; SRAA_RS06370; phage(gi589891010)          2.12e-07            MSSTDSLSASTRPRIVFSHANSFPGPTYRVLFERLQQLGYAVRAPEKFGHDPAYPVSSNWPHLVQQLADFVLREYASAADRESPLYLVGHSLGGYLSLMCAAKFPLLGGRPVAGVVLLDSPLLSGWRARALQAAKQTRLIGAVSPGQVSRKRRNSWASAEEALAHFAHKKAFARWDERVLRDYIAHGTHEAATAQGSKRVLSFEREVETAIYNTLPDHFDRLLRRHPLACPLAFVGGSESVELRQVGMGLTHKLVGHTPSDRLQTLEGSHLFPMERPEESALAIDRALRSFAGGS
complement(1360172..1361005)       undecaprenyl-diphosphatase; SRAA_RS06375                                             N/A                 MDIVLLLKAAVMGLVQGITEFLPISSTGHLILTSALLGLYGEKVRLFEVVIQVGALLAIVSVYLERLLATARGLPRGDAVAWRFTSNLVIGCLPAVLLGVLFFDFITGVLFNPLVVASTFISGGLVILWVEARQARQPPQRIQEVDEVGWRDSLTVGLIQCLALVPGVSRSGATIIGAMAFGFSRRSATEFSFFLSIPMLVGAAGYDLFRNSDLLTRADLPFFAVGLIVTWLSAWACVRWLLRYVAQHTFVPFAWYRIAFGLLVLLTAYMGWVDWTR
1361282..1361614                   PHAGE_Dinoro_DFL12phi1_NC_024367: putative host-like protein; SRAA_RS06380; phage(gi658311036)     3.21e-21            MANPLIKQVTDASFDADVLKSSLPVLVDFWAEWCGPCRTVAPILDELATHYQGKLQITKMNVDESRQVPAQFGIRGIPTLMIFKDGKVAATKVGALNKSQLSAFIDPNLA
