gi|00000000|ref|NZ_AP024671.1|  Mycobacterium tuberculosis strain R2092 chromosome, complete 4383210, gc%: 65.62%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
2937924..2937944                   attL                                                                                 N/A                 CCGCGCAATAAACGCGCAATA
2938412..2939410                   PHAGE_Mycoba_Sneeze_NC_031102: u-spanin; K5645_RS13725; phage(gi100032)              1.44e-69            MycobacteriumtuberculosisMNTATRVRLARKRADRLNLKLIKNGHHFRLRDADEITLAVGHLGVVEAFLAAAKSQNKPPGPPPSLHAPPSWRRDIDDYLLNLNAAGQRPATIRLRKTVLCAAAHGLGRPPADVTAEHLLDWLGKQQHLSPEGRKTYRSTLRGFFVWAYEMDRVRDYVADSLPKVRCPKQPPRPAGDDVWQAALAKADRRIELMIRLAGEAGLRRAEAAQAHTGDLMDGGLLLVHGKGGKRRIVPISDYLAALIRDTPHGYLFPNGTGGHLTAEHVGKLVSRALPGDATMHTLRHRYATRAYRGSHNLRAVQQLLGHASIVTTERYTALCDDEVRAAAAAAW
2939424..2939888                   PHAGE_Vibrio_12A10_NC_029067: hypothetical protein; K5645_RS13730; phage(gi985769831)     1.00e-10            MycobacteriumtuberculosisMLQPIGVTPDRRLVFGQRRLEAARLLGWERIPVHVCHTIADVVDRAKAERSENTLRKDFTPSELLAAGRRIAELERPKAKQRQREGGDHGRQARYSGLGSMEPKPESERDAHKADTAISEALGISRGHYQRLKRIDNATRSEAGYRDGLNGWSG
2939876..2940127                   hypothetical protein; K5645_RS13735                                                  N/A                 MycobacteriumtuberculosisMERLTAGARDGPRRQLVQRATLTSTLAQLIFGGLACLLSLAAPSLIATPNLPLNRALHTHPELILDTLLLPNPTLKLTPVVVD
complement(2940298..2941737)       PHAGE_Gordon_Zirinka_NC_031097: hypothetical protein; K5645_RS13740; phage(gi100006)     1.67e-81            MycobacteriumtuberculosisMTTEQHFADDGDIKQLSLDETRSAAKQLLDSVEGDLTGDVAQRFQALTRHAEELRAEQRRRGREAEEALRRCRAGELRVVPGAPTGGDDGDAPPGNSLRDTAFRTLDVCVRDGLMSSRAAEAAETLCRTGPPQSTSWAQRWLAATGNRDYLGAFVKRVSNPVAGHTTWTDREAAAWREAAAVAAEQRAMGLVDTAGGFLIPAALDPAILLSGDGSTNPIRQVARVVQTTSEVWRGVTSEGAEAHWYSEAQEVSDDSPTLAQPAVPSYRGSCWIPFSLEIEGDAAGFVAEVGRVLADSVEQLQAAAFVSGSGNGEPTGFVSALTGTADYTVTGAGTEAVVAADVYALQSALPPRFQSNSAFAANLSTINVLRQAETANGALKFPSLHASPPMLAGKHIWEVSNMDTVDAAVTATNYPLVLGDWKQFIITDRVGSTVELVPHVFGGNRRPTGQRGFFCWFRVGSDVLVDNAFRVLKVQTTA
complement(2941745..2942278)       PHAGE_Gordon_McGonagall_NC_030912: hypothetical protein; K5645_RS13745; phage(gi100007)     1.81e-10            MycobacteriumtuberculosisMSSILFRTAELRPGEGRTVYGVIVPYGEVTTVRDLDGEFREMFAPGAFRRSIAERGHKVKLLVSHDARTRYPVGRAVELREEPHGLFGAFELANTPDGDEALANVKAGVVDAFSVGFRPIRDRREGDVIVRVEAALLEVSLTGVPAYLGAQIAGVRAESLAVVSRSLAEARLALMDW
complement(2942431..2942922)       PHAGE_Gordon_Kita_NC_031233: methyltransferase type 11; K5645_RS13750; phage(gi100001)     6.96e-27            MycobacteriumtuberculosisMGRRGPAPAPAQLKLLGGRSPGRDSGGRRVTPPAAFERVAPECPDWLPPGAKDMWGRVVPELAALNLLKESDLGVLTSFCVAWDQLMQAVTAYREQGFIATNARSRRVTVHPAVAAARAATRDVLVLARELGCTPSAEANLAAVLAAAGDPDDDEFNPFAPDR
complement(2943089..2943412)       type II toxin-antitoxin system toxin; K5645_RS13755                                  N/A                 MycobacteriumtuberculosisMTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLDDEQRRLEAGMKLGWHPYHFPDEPDSKQ
complement(2943492..2943737)       type II toxin-antitoxin system antitoxin; K5645_RS13760                              N/A                 MycobacteriumtuberculosisMSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDPP
complement(2943734..2945161)       DUF3631 domain-containing protein; K5645_RS13765                                     N/A                 MycobacteriumtuberculosisMADIPYGRDYPDPIWCDEDGQPMPPVGAELLDDIRAFLRRFVVYPSDHELIAHTLWIAHCWFMEAWDSTPRIAFLSPEPGSGKSRALEVTEPLVPRPVHAINCTPAYLFRRVADPVGRPTVLYDECDTLFGPKAKEHEEIRGVINAGHRKGAVAGRCVIRGKIVETEELPAYCAVALAGLDDLPDTIMSRSIVVRMRRRAPTEPVEPWRPRVNGPEAEKLHDRLANWAAAINPLESGWPAMPDGVTDRRADVWESLVAVADTAGGHWPKTARATAETDATANRGAKPSIGVLLLRDIRRVFSDRDRMRTSDILTGLNRMEEGPWGSIRRGDPLDARGLATRLGRYGIGPKFQHSGGEPPYKGYSRTQFEDAWSRYLSADDETPEERDLSVSAVSAVSPPVGDPGDATGATDATDLPEAGDLPYEPPAPNGHPNGDAPLCSGPGCPNKLLSTEAKAAGKCRPCRGRAAASARDGAR
complement(2945163..2945555)       DUF2742 domain-containing protein; K5645_RS13770                                     N/A                 MycobacteriumtuberculosisMTAVGGSPPTRRCPATEDRAPATVATPSSTDPTASRAVSWWSVHEYVAPTLAAAVEWPMAGTPAWCDLDDTDPVKWAAICDAARHWALRVETCQAASAEASRDVSAAADWPAVSREIQRRRDAYIRRVVV
complement(2945552..2945812)       PHAGE_Mycoba_Blexus_NC_051635: DNA adenine methyltransferase; K5645_RS13775; phage(gi100041)     1.24e-21            MycobacteriumtuberculosisMCAFPSPSLGWTVSHETERPGMADAPPLSRRYITISEAAEYLAVTDRTVRQMIADGRLRGYRSGTRLVRLRRDEVDGAMHPFGGAA
complement(2945829..2946191)       hypothetical protein; K5645_RS13780                                                  N/A                 MycobacteriumtuberculosisMADAVKYVVMCNCDDEPGALIIAWIDDERPAGGHIQMRSNTRFTETQWGRHIEWKLECRACRKYAPISEMTAAAILDGFGAKLHELRTSTIPDADDPSIAEARHVIPFSALCLRLSQLGG
complement(2946194..2947321)       PHAGE_Mycoba_Heldan_NC_042328: holin; K5645_RS13785; phage(gi100034)                 5.21e-80            MycobacteriumtuberculosisMTQTGKRQRRKFGRIRQFNSGRWQASYTGPDGRVYIAPKTFNAKIDAEAWLTDRRREIDRQLWSPASGQEDRPGAPFGEYAEGWLKQRGIKDRTRAHYRKLLDNHILATFADTDLRDITPAAVRRWYATTAVGTPTMRAHSYSLLRAIMQTALADDLIDSNPCRISGASTARRVHKIRPATLDELETITKAMPDPYQAFVLMAAWLAMRYGELTELRRKDIDLHGEVARVRRAVVRVGEGFKVTTPKSDAGVRDISIPPHLIPAIEDHLHKHVNPGRESLLFPSVNDPNRHLAPSALYRMFYKARKAAGRPDLRVHDLRHSGAVLAASTGATLAELMQRLGHSTAGAALRYQHAAKGRDREIAALLSKLAENQEM
2947336..2947356                   attR                                                                                 N/A                 CCGCGCAATAAACGCGCAATA
complement(2947466..2947693)       hypothetical protein; K5645_RS13790                                                  N/A                 MycobacteriumtuberculosisMIAGVDQALAATGQASQRAAGASGGVTVGVGVGTEQRNLSVVAPSQFTFSSRSPDFVDETAGQSWCAILGLNQFH
complement(2947690..2948079)       hypothetical protein; K5645_RS13795                                                  N/A                 MycobacteriumtuberculosisMRARSDAGGQSVKSRTSNRSRSSRRSRVRSSISALVDNPQARPRELPVLCGWPVVRVEPVCEFVPEPVCGQAEVLGEPAAAHRVTSARRSPSTTVCSRSQKASAVVISSVSSVARVRRASVSSVDATTA
2947985..2948257                   hypothetical protein; K5645_RS13800                                                  N/A                 MycobacteriumtuberculosisMDDLTRLRRELLDRFDVRDFTDWPPASLRALIATYDPWIDMTASPPQPVSPGGPRLRLVRLTTNPSARAAPIGNGGDSSVCAGEKQCRPP
2948356..2948589                   PHAGE_Gordon_Attis_NC_041883: u-spanin; K5645_RS13805; phage(gi100032)               2.93e-05            MycobacteriumtuberculosisMEVRASARKHGINDDAMLHAYRNALRYVELEYHGEVQLLVIGPDQTGRLLELVIPADEPPRIIHANVLRPKFYDYLR
2948600..2948854                   PHAGE_Gordon_GMA5_NC_030907: hypothetical protein; K5645_RS13810; phage(gi100018)     2.93e-05            MycobacteriumtuberculosisMKHKTDIDEWLDTIEPNPADAHDASHLRRIIAAKEAVQTAESELRAAVNAARAAGDTWAAIGVALGITRQAAFQRFGPHSTASP
2949202..2949483                   hypothetical protein; K5645_RS13815                                                  N/A                 MycobacteriumtuberculosisMIVVRTAEAAEQALTEGQLVCPRRGCGDTLRRWRYGRRRHVRSLGSQVIDVRPQRVRCRRCESTHVLLPAALQPRLGRGGGGQLRPGVWCTGR
2949574..2950356                   PHAGE_Coryne_Poushou_NC_042139: hypothetical protein; K5645_RS13820; phage(gi100031)     3.62e-61            MycobacteriumtuberculosisMTSSHLIDAEQLLADQLAQASPDLLRGLLSTFIAALMGAEADALCGAGYRERSDERSNQRNGYRHRDFDTRAATIDVAIPKLRQGSYFPDWLLQRRKRAERALTSVVATCYLLGVSTRRMERLVETLGVTKLSKSQVSIMAKELDEAVEAFRTRPLDAGPYTFLAADALVLKVREAGRVVGVHTLIATGVNAEGYREILGIQVTSAEDGAGWLAFFRDLVARGLSGVALVTSDAHAGLVAAIGATLPAAAWQRCRTHYAAN
2950399..2951157                   PHAGE_Gordon_Attis_NC_041883: hypothetical protein; K5645_RS13825; phage(gi100031)     6.82e-05            MycobacteriumtuberculosisMPEPTPTAYPVRLDELINAIKRVHSDVLDQLSDAVLAAEHLGEIADHLIGHFVDQARRSGASWSDIGKSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHLLLGVLTDPAALATALLQQQEIDIATLRTAVTLPPAVTEPPQPIPFSGPARKVLELTFREALRLGHNYIGTEHLLLALLELEDGDGPLHRSGVDKSRAEADLITTLASLTGANAAGATDAGATDAG

#### region 2 ####
4046979..4048211                   PROPHAGE_Escher_CFT073: transposase; K5645_RS18865; phage(gi26248360)                4.59e-05            MycobacteriumtuberculosisVLSVEDWAEIRRLRRSERLPISEIARVLKISRNTVKSALASDGPPKYQRAAKGSVADEAEPRIRELLAAYPRMPATVIAERIGWWYSIRTLSGRVRELRPLYLPPDPASRDICGRDRAVRLLVPRCRCAGGVRPGPHRHGVTCADHGVWVFAVGLGAVDPDTHRRRLVCRVVAASFDVGRRSKGVGVGRRGRGRAVVGAPTTDCGMPCLPRHPGRQSVDLTGDPEAKGLVERFHDYLERAFLPGRVFASPADFNTQLQAWLVRANHRQHRVLGCRPADRIEADTAAMLTLPPVGPSIGWRTSTRLPRDHYVRLDGNDYSVHPVAIGRRIEITADLSRVRVWCGGTLVADHDRIWAKHQTISDPEHVVAAKLLRRKRFDIVGPPHHVEVEQRLLTTYDTVLGLDGPVA
4048211..4048957                   PROPHAGE_Escher_CFT073: transposase/IS protein; K5645_RS18870; phage(gi26248359)     8.21e-45            MycobacteriumtuberculosisMAAKTATNSRDVAAELAYLTRALKAPTLRGAIEQLADRARTKTWSYEEFLAACLQREVSARESHGGEGRIRAARFPSRKSLEEFDFDHARGLKRDTIAHLGTLDFVTLAIGIAIRACQAGHRVLFATASQWVDRLAAAHHSGTLQSELIRLARYPLLVVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVIALKGDSYRIKDRDLGRVPTVTADDQ
complement(4049747..4050976)       PHAGE_Paenib_Vegas_NC_028767: transposase; K5645_RS18875; phage(gi971741608)         2.16e-73            MycobacteriumtuberculosisMALPQSALSELLDAFRTGDGVDLIRDAVRLVLQELSELEATERIGAARYERSDTRVTDRNGARSRVLSTQAGDVELRIPKLRKGSFFPAILEPRRRIDQALYAVVMEAYVHGISTRAVDDLVEAMGVETGISKSEVSRICAGLDEIVGAFRTRTLGHIEFPYVYLDATYLNVRNGTGQVVSMAVIVASGIAADGSREILGLDVGDSEDETFWRGFLTSLKGRGLGGVRLVISDQHAGLVKALKRCFQGAGHQRCRVHFARNLLAHVPKDKADMVASMFRMIFSAPDAEAVHATWEGVRDRLAASFPKIGPLMDDARAEVLAFTAFPKAHWQKIWSTNPLERINKEIKRRSRVVGIFPNPAAVIRLVGAVLADMHDEWQASERRYLSEASMALLYPDSDNAVVAAISGGQ
complement(4051152..4051787)       PHAGE_Salmon_SP_004_NC_021774: hypothetical protein; K5645_RS18880; phage(gi526003651)     2.17e-05            MycobacteriumtuberculosisMPHPWDTGDHERNWQGYFIPAMSVLRNRVGARTHAELRDAENDLVEARVIELREDPNLLGDRTDLAYLRAIHRQLFQDIYVWAGDLRTVGIEKEDESFCAPGGISRPMEHVAAEIYQLDRLRAVGEGDLAGQVAYRYDYVNYAHPFREGNGRSTREFFDLLLSERGSGLDWGKTDLEELHGACHVARANSDLTGLVAMFKGILDAEPTYDF
complement(4051798..4051992)       antitoxin VbhA family protein; K5645_RS18885                                         N/A                 MycobacteriumtuberculosisMFVQATELQKVKRRFRNVRATRRNTELEGTRSTAATRADQNDYARGKITAAELGERVRRRYNIQ
4052387..4052578                   PHAGE_Gordon_Yeezy_NC_031269: holin; K5645_RS18890; phage(gi100034)                  1.30e-06            MycobacteriumtuberculosisMERSIGLEAAAQQAGHSGSEITRRHYVERSVTVPDYTAALDEYSRPIRAFRPLKSNRPGDIPT
complement(4052589..4052664)       tRNA                                                                                 N/A                 GCCGCCTTAGCTCAGTCGGTAGAGCGATTCACTCGTAATGAATAGGTCAGGAGTTCGATTCTCCTAGGCGGCTCCA
complement(4052743..4053948)       PHAGE_Nodula_vB_NspS_kac68v161_NC_048757: putative replicative DNA helicase; K5645_RS18900; phage(gi100080)     5.95e-13            MycobacteriumtuberculosisMSGVFTRLVGQQAVEAELLATAKAARRDSAHSAGGGGTMTHAWLLTGPPGSGRSVAALCFAAALQCTSGGEPGCGRCRACTTTLAGTHADVRRVIPEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTVFLLCAPSVDPEDIAVTLRSRCRHVALVTPSTHAIAQVLSDGDGLDPDTANWAASVSGGHVGRARRLATDPQARQRRERALGLARDAATPSRAYAAAEELVAGAEAEALALTAQRIEAETEELRTALGAGGTGKGTGAALRGATGAMKDLERRQKSRQTRASRDALDRALIDLATYFRDALLVAAHAGGVRANHPDMADRVAALAAHAPPERLLRCIEAVLACREALAVNVKPKFAVDAMVATIGQELR
4054034..4055683                   PHAGE_Pelagi_HTVC008M_NC_020484: adenylate/guanylyl cyclase; K5645_RS18905; phage(gi460042455)     6.06e-20            MycobacteriumtuberculosisMDAEAFVGFRQVPAARYGGLMATTAALPRRIHAFVRWVVRTPWPLFSLSMLQSDIIGALFVLGFLRYGLPPQDNIQLQDLPPVNLLIFVSTVIILFLAGAVVNLKLLMPVFRWQRRDNLLTEPDPAATELARSRALRMPLYRTLISLAVWATGGGVFILASWSVAKHAAPVVAVATALGATATAIIGYLQSERVLRPVAVAALRSGVPENVNAPGVILRLMLAWIPSTGVPLLAIVLAVAADKIALLHATPEALFNPILMMALAALGIGSVSTLLVAMSIADPLRQLRWALSEVQRGNYNAHMQIYDASELGLLQAGFNDMVRELSERQRLRDLFGRYVGEDVARRALERGTELGGQERDVAVLFVDLVGSTQLAATRPPAEVVQLLNEFFRVVVETVARHGGFVNKFQGDAALAIFGAPIEHPDGAGAALSAARELHDELIPVLGSAEFGIGVSAGRAIAGHIGAQARFEYTVIGDPVNEAARLTELAKLEDGHVLASAIAVSGALDAEALCWDVGEVVELRGRAAPTQLARPMNLAAPEEVSSEVRG
