gi|00000000|ref|NC_000000|  Salmonella enterica subsp. enterica serovar Typhimurium str. 35423 [asmbl_id: NC_000000].270665, gc%: 51.65%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(1..623)                 PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; SEET5423_RS47615; phage(gi23505490)     9.46e-154           MNNLMVIDGIEVRRDVHGRYCLNDLHRAAGGEQKYRPKYWLDNKQTRELIEQLFTEGGIPPSEQNQSVSFFQGGSDTQNLGIAPVNTVRGGAEQGTYVCKELVFAYVMWISPSFHLKVIRTFDRITSAPQTSSGMAADKMQAGVILLGFMRKELNLSNSSVLGACQKLQEAVGLPNLAPQYAIDAPAGALDGSSRPTLALSALLKQHG
complement(640..1029)              PHAGE_Salmon_ST64B_NC_004313: holiday-junction resolvase; SEET5423_RS47620; phage(gi23505489)     9.00e-92            MRLVLPFPPSVNTYWRAPNKGPLAGRHLISAVGRKYQSAACVAIIEQLRRLPKPSTELAAVEIILYPPDKRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVEWGPVFPKGKVEITITKFETGAGAAD
complement(1026..1919)             PHAGE_Salmon_ST64B_NC_004313: putative DNA methyltransferase; SEET5423_RS47625; phage(gi23505488)     0.0                 MSNKYCQALAELRNKSAHELKEVGDQWRTPDLLFWGINAMFGPLTLDLFADDDNAKCPVWYTADDNALVQDWAEMLESIGGAAFGNPPYSRSQYHEKQAITGMTHIMDHTMEMREKGGRYVFLVKAATSETWWPEDADHIMFIRGRIGFDLPVWFVPADDKQKTTGAFFAGAIAIFDKSWRGERFSYISRTELEEKGKAFMSLVEFAAGKVQPPATTAPEQEEPIIAPAVLPYVDSRIWPLEVGLVFNQVEGADSLDASQQNKLKANINQLWLERMPTSEIITTAGGLVSSMRREVA
complement(1919..2401)             PHAGE_Salmon_ST64B_NC_004313: putative transcriptional activator; SEET5423_RS47630; phage(gi23505487)     3.15e-117           MSLMGDVQKFIESHPGCTSSDIANAFADFPRKSVLQSTSKLRQCRRVAHRFEGKTRRHFALETDIQPDQEPDIGTKPVRSCYVGTNDPQVIMHLIRQAETLESGGLFRRAATVWMEAFRESHIPSERSAFLARRERCLRKSRKSVASGSEWYLSGNYVGS
complement(2403..3221)             PHAGE_Salmon_ST64B_NC_004313: putative replication protein; SEET5423_RS47635; phage(gi23505486)     0.0                 MSMELMVKAMKIRVGNPLRKLVLIKLADNASDQGECWPSYQHIADQCEISKRSVMNHIAALCESGLVKKVTRKGEKGNSSNIYLLHLDGAGDSLGGSANNSLPGAANSLGSAGVAPGGSEGDSPRTSHSFEPVKEPVNESKTIGASAYASSSVCFARQEYSPEFEQAWLAYPKRAGGNSKSAAYKAWKARLKEGVNAETMLEGVKRYAGWVSATGNSGTQFVKQATTFFGPDRHFGELWAVPAAPSPGREDPMFKSSYGNVDYSQIPTGFRG
complement(3218..3442)             PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; SEET5423_RS47640; phage(gi100121)     1.26e-50            MIRNIFKRFTSQRFHCPRPGQWYSTPEGYVLRISLVDRECQKVVCEPLGRNYRVNMPLIAFRSGKNMKHLGGAA
complement(3439..4596)             PHAGE_Salmon_ST64B_NC_004313: putative antirepressor; SEET5423_RS47645; phage(gi23505485)     0.0                 MNSLTVNNRLSQQPGMYEYRPLRHECRLPNSLVVRNHREHSLTVGDESCRNLTAGFGMEGDFMSMSFAGNQKLSALSICARAIRMSVLALCGNSGVILLSVKRQEHIDSAIPGRYTVQAPHKAGAGRGNPEFNIEHNRAHAVFSCHEHCYAQIMVGRAGPVSAGPGSMLTGISTPVRLTTYKVVESLGGEFIEFNIEAATMATVPTLAQPEIRIINGQAVTSSLAVADYFIKRHADVIRKIESLECSTLFRQRNFAFTSISINQPNGGTRKLPCYQITRDGFAFLAMGFTGKRAAQFKEAYINAFNQMEKQLSIPSVLSDAAHNASVLYSYISSIHQVWLQQLYPMLEKAESPLAVSLYDRINDAVALASLINMTLNRSEVRGRK
complement(4593..5147)             PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; SEET5423_RS47650; phage(gi100118)     4.16e-135           MGHEPEWKVEKQPRWLVAAIKKTISSLHGGYEEAAEWLDVTKDALFNRLRTGGDQIFPIGWALVLQRAGGTYHLAHSVARASGGVFVPLADMEEVDNADINQRLLEAIEQITSYSQQIRVAIEDGVIEPHEKAVIDEELYQAIAKLQQHSTLVYRVFCAPEKGDARECAAPGAVASNFMEKTNA
complement(5176..5400)             PHAGE_Salmon_ST64B_NC_004313: DNA binding protein; SEET5423_RS47655; phage(gi23505483)     4.50e-49            MQSPLRKLRKSHGYTLQHVAKGVQVDPATLSRVERCEQAPSTELAERLAQFYAGEISEMQILYPNRYQLSDSAI
complement(5339..5524)             hypothetical protein; SEET5423_RS52550                                               N/A                 MSDTVSYIHAFITLIFCALCKSTCASLLYEITCDIRKRRRFYAITIEKIAEIAWLYVTARR
5498..6193                         PHAGE_Salmon_ST64B_NC_004313: regulatory protein; SEET5423_RS47660; phage(gi23505482)     4.14e-170           MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIAELFTSDPKGNTVCKHSDMRKDSANVKDLFRIEILDVSASAGNGLIQGGDVIDVIHAIEYNKDKALAMFGGRPAAELKVINVRGDSMAPTIEPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPDKLLVISDNTNYREWSITKDNECRFGVFGKVLISQTQSLKRHN
6399..6737                         PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; SEET5423_RS47665; phage(gi100115)     6.51e-78            MNNYYTCSFCGANEMDAKKIIAKGGNADPAICSECVVRCVGVLANTSTTESTRSTEMNNAASIEFWQLITALSEMAISSLKAAQEMGDEESACLIAKKLSVKFDYAPCRETV
complement(6928..7152)             PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; SEET5423_RS52555; phage(gi100114)     4.69e-43            LTRVRAAFTTTMRALPVSELNGPFLCPTHLTKEVCLESNQHLCLARQYSHRCVPVFSPHQARWYPYKPHSFKGF
7171..7182                         attL                                                                                 N/A                 TCCTCTGTAGTT
7171..7182                         attL                                                                                 N/A                 TCCTCTGTAGTT
7171..7182                         attL                                                                                 N/A                 TCCTCTGTAGTT
complement(7181..7366)             hypothetical protein; SEET5423_RS52560                                               N/A                 MSPSRGDALFCCVKRSASRQNTVAFLLLLEEPDADKSSHSNNVVVPGASRYLAKVARQTGA
7464..7835                         PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; SEET5423_RS47670; phage(gi23505481)     4.09e-85            MNDDRMTVVPDFLGELDAGVFMNKIAAALNTVGLGVLNNGNKGKVVLTFDFERMGNSVEEKRVKIKHKLQYSTPTPRGKASEEDTTETPMWVNKGGKLTILQEDQGQLLSIKGTTDGKLKAAQ
7893..8720                         PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; SEET5423_RS47675; phage(gi23505480)     0.0                 MSQLDSGTFQQVKDLVLSGYHLNDIQGLACPTALLPAGTGVESLERFALERFRFRGTMTTTSIEDFVRYSKGYASATEKARCFIDADHMTARSVFNIGTLDNPGHADNAASITLKQTAPFRALLQINGERLKQKQIAEWLEDWSDYLLAFDSDGNTMQISQAAQAVRRITIQQATQQDHEDGDFSGKKSLMQSIEASSKDVMPVAFEFKCVPYEGLGERAFSLRNSLLTGDEPRFVLRIVQLEAQEEAIANEFRDMLINKFDGESVETFIGNFKA
8857..9396                         PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; SEET5423_RS47680; phage(gi23505479)     2.21e-129           MSFIQTLSGKQFDYLSATIDDIDIEDIAVALSNICRFSGHLPEFYSVAQHSVLCSQLVSPEFAFEALMHDAAEAYCQDIPAPLKALLPDYREIEKRTDQLIRFKFGLPLEEASVVKYADLTMLATERRDLDIDDSIPWVILEGIPPTDLFEIYPLRPGQAFGLFMARFNELMELRQCAA
9467..10000                        PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; SEET5423_RS47685; phage(gi100110)     1.62e-131           MTVHTLKQCRPDQEETEYLWKLFHAAQRNDARWHGSEISIIADELSRTDLDRNQKLFLLRSWQVLVDDKGGFGRFMGAFDTYVYNMQDPDDDCVAWKPELSNLLCDGQLLDVVIDAYQSARQRIAELEARTVNLSKRSVGEVMHMSGFSRDYAEGWCAGNDNAIHEIRTAGIKVKGE
10002..10259                       PHAGE_Salmon_118970_sal3_NC_031940: hypothetical protein; SEET5423_RS47690; phage(gi100109)     6.95e-58            MATLTKQEKAWVKKLNKLLAECPSNRIAFATTGDCEVSLFDVTRYDEIFDEVEKGKSEFIPSAMRIGATFNECLTFPNQVESTAG
10270..10851                       PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; SEET5423_RS47695; phage(gi23505475)     1.51e-112           MTTITKERIELFIKSPLENGLTRGEQMELARIALASLEAEPVSQTYELPQTQFEQVADLYEMQFDDGRTCAFHTDGAKAAQWLLACDGNKVQEYVRLERYHEALIGNSPVIPDDWVMVPKKLTAENGAKSLLSGEFLETTFISFPECLADEECESCDGSGRIKIEVPVSWTTIKAIWNKGVEHFRSSTATGDN
10855..11424                       PHAGE_Salmon_ST64B_NC_004313: Endodeoxyribonuclease; SEET5423_RS47700; phage(gi23505474)     9.03e-141           MNNLMIDLETMGKKPNAPVVSIGAVFFDPQSGEIGPEFYTAVSLESAMEQGAVPDGDTILWWLRQSPEARAAICADAVSVTTALIEFNDFITCHADDLKYLKVWGNGANFDNVILRGAFERASLPCLWNYRNDHDVRTMVTLGRAIGFDPKRDMPFEGDMHNALADARHQAKYVSAIWQKLIPPTSNNI
11449..11691                       PHAGE_Salmon_ST64B_NC_004313: hypothetical protein; SEET5423_RS47705; phage(gi23505473)     5.67e-55            MEKQLMSDRFLTEEELEDATGASQKSLQKEVLTLNGIYFIERRDGSIRTTWYHINHPVSRLLPPAGYQPVPGMNFDAIES
11693..12681                       PHAGE_Salmon_ST64B_NC_004313: Integrase protein; SEET5423_RS0126600; phage(gi23505472)     1.26e-28            MGRKRAPGNEWMPKGVFFRPSGYYWKPGGSTENIAPADATKAEVWVAYEKKLRVEKTELHSHNYGENFLPVPIMLIWPQERRKIIWHMRNIYLPYLVMPKLKQSQNISGVIWMPVGKKAVSRRIMNTALCRAYFVGVINVVMFLVILALVWISFLSLNAIDILPMKSTERYIITQRQPSGLQWKLIYVLPEFLMYKTGIKYWRKEFLFSKEKPELNKLNPGQIAYVMPLKYVVNGERKALLSGLCMASVILIKDLTRRGERRERLRGMIWDVLLTALSTIRQRGFQTMRERRKTSRSTVATKPNPRFLFTIARKAQPWTGSVGA
complement(12795..12884)           tRNA                                                                                 N/A                 GGAGAGATGCCGGAGCGGCTGAACGGACCGGTCTCGAAAACCGTTGCGGGGGTAACTCCGCCGAGGGTTCGAATCCCTCTCTCTCCGCCA
12973..13770                       protein MtfA; SEET5423_RS47715                                                       N/A                 MIKWPWKAQEITQNEDWPWDDALAIPLLVNLTAQEQARLIALAERFLQQKRLVALQGFELDSLKSARIALIFCLPILELGIEWLDGFHEVLIYPAPFVVDDEWEDDIGLVHSQRVVQSGQSWQQGPIILNWLDIQDSFDASGFNLIIHEVAHKLDMRNGDRASGIPFIPLRDVAGWEHDLHAAMNNIQDEIDLVGESAASIDAYAATDPAECFAVLSEYFFSAPELFAPRFPALWQRFCQFYRQDPSQRLRVSAAEGDYGEESEH
13871..13946                       tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
13871..13882                       attR                                                                                 N/A                 TCCTCTGTAGTT
14142..14432                       PROPHAGE_Escher_Sakai: putative integrase; SEET5423_RS0126605; phage(gi15834507)     2.85e-14            MPDQRKRPSSSLTGLASIDSKYWQSGYRFNGKQKVFSIGVYPAVSLADARQRRDEVKRLLDQGIDPNAKNRLMKKSFRKSAIKPARPVSSPKADAP
14841..14916                       tRNA                                                                                 N/A                 TCCTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGTCAGAGGAGCCA
14841..14852                       attR                                                                                 N/A                 TCCTCTGTAGTT
15080..15553                       PHAGE_Escher_phiV10_NC_007804: putative protease; SEET5423_RS47730; phage(gi89152430)     7.84e-53            MALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEKYAFTAPEGQELDTSALAQFEPVARELNLTQEQAQKLVDVYPKVLAGVQQQQAESWQKQTEDWAAAVKADKDIGGDKLASNLGAAQRAIDTFGTKELKEYLDGTCARSLVNAAP
15550..15732                       hypothetical protein; SEET5423_RS53185                                               N/A                 MTEAIPPGTCYHISAFYFTGCGLQRRPALLPRDRQSAPESAIFRARHSTGASLSSRKATK
15644..16040                       hypothetical protein; SEET5423_RS53190                                               N/A                 VTVNLRQNPRSFAPGTQPVRHFRRAKRQSDAQPLHRAMPLFSGFRRSFPNLTRLFGAAVSKKEEKKIDTEGGADAPENFCSRRQPVPRTVNSLYLNKLPLRRKGIVLAQPKSIRRRLFVFSKSQEKCMGKLG
16028..16495                       PROPHAGE_Salmon_LT2: integrase; SEET5423_RS47735; phage(gi16766072)                  5.03e-46            MGKLGGEMKALAKHCGGSHKTVNDCIHIVQRFDHHLRALNVHIQRVAQIKVRHIESYIHERLAQGIGKRTLQNEMASLRAVLQQAGRKQVAEHEWLTNKSLGLAGASRSGTRQAITPEHYHHVLETARMKAPGLAAALELARLMGLRSQEAVQSVQ
26616..26627                       attR                                                                                 N/A                 TCCTCTGTAGTT
