gi|00000000|ref|NC_000000|  Clostridioides difficile CD160 gcdCD160.contig.90, whole genome [asmbl_id: NC_000000].65093, gc%: 28.37%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

#### region 1 ####
complement(1..227)                 PHAGE_Clostr_CDMH1_NC_024144: putative minor structural protein; QEW_RS16870; phage(gi640884864)     1.95e-41            MDWLKELLEGIKVEDNKIDVASLQKSIEKKIKETTVTQEDYVNLETQLNTANETIKKFEGGMTKEDVESLKTTYEAC
complement(271..465)               PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS16875; phage(gi640884863)     2.59e-27            MCILTQIIVVVCVVQIVINCIANLNVSILCNKLKKENKANIDEVSDEILKKVNEELNKSLEKSL
complement(488..1120)              PHAGE_Clostr_phiCD119_NC_007917: hypothetical protein; QEW_RS16880; phage(gi90592643)     2.60e-130           MAKFKKKPVEVEAFKLGYDVEPKWFIENDRVCNFIQEKCIGGNVSCDLETLEGTMRANKGDYIIQGVKGEIYPCKADIFEMTYQKVEYTATIENLTNYAENLEQKHRYIDKEKVKKNNLEFSAKLELDTTDFEKNIKSATKEIDIFNEAARNLEENLNRIFGKEKINETKIKIKSPAKRLSDEDLKYIRELASKDIKARFAKEGKTKINY
complement(1122..1373)             hypothetical protein; QEW_RS16885                                                    N/A                 MFKLYILSIIVFCTGLYLLKMRVDGNKELIELFKSMNIRKRKKYNFIFLALFPLLNFILGVILIPYSLLVSNENMVKALRRNK
complement(1605..3092)             PHAGE_Clostr_CDMH1_NC_024144: putative minor head protein; QEW_RS16890; phage(gi640884861)     0.0                 MKHKDYWRKRFEQLEEAQNNKSVKYYLELEKQYKLAMNSIEKDIFVWYNRFAENEGISLLEAKKLLNTRELEEFKWSVEEYIKYGKENAINQKWMKELENASARVHITRLEALKLQIQQQVEVLYGNELDSIDKLMKDIYTSGYYHTAFNVQQGINVGWSLMSLDANKINKVISKPWTSDGLNFSERIWGKHRPALINELHTKLTQSIIRGENPKKLVNDFAKRFNVSKSQAKNLIMTESAFFASASRKDCFNNLLIEKYEIIATLDLKTSNICRELDGKVFEMKDYEIGVTAPPFHCRCRTTTAPFFSDEEGYRVARDENGKTYYVPSSMKYQEWYEKYINKNIKLSDNEQLAINKYISSDSYKINEKLRNGLTLTNEDKRFINDLDSALDKMSNYKGEVNRSLYFFNDSDKIAFLDKHQVGKEIIYNEYISTSSKGEYNPSGQVELNIISANGKDIRKYNPQEAEILFKRNSKFITTDNFEYDGKYYITMKEV
complement(3082..4524)             PHAGE_Clostr_CDMH1_NC_024144: putative phage portal protein; QEW_RS16895; phage(gi640884860)     0.0                 MLNIYISETDLIKAQLKKESTFNLARVIEHYILKHRPERYKQGEEYYYGNTDINNKRRYYFLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDNFTKILNDMLGEEFDDTITELYLNASNKGIEWLHPYIDRKGEFKYVIIPAEEAIPIWDSKRQKELVAFIRFYYIEDIDGNKIKRVEYYTENDVTYFIERGNSFVQELLYDEYGKLTEIQEGHFKVNNKEQGWGKVPFIPFKNNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEFIYVLKEYPGTSLQEFIDNIRYYKSVKVDDGGGVDKLEISIPIEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISSSKSYDYKSVQITFNHSMIINESEKIDMASKSIGIISDETIVSNHPWVEDVNDELERLKKQEETQKEYDDLIPTNNQEGVIDET
complement(4530..5771)             PHAGE_Clostr_CDMH1_NC_024144: putative phage terminase large subunit; QEW_RS16900; phage(gi640884859)     0.0                 MIVKIDFNPAFKGANFTKKRYRAMKGSAGSGKSVNVAQDYILKLGDKKYQGANLLVVRKSEATHKYSTYAELTGAINRIYGKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQREKLKSINFSKGKLTWVWCEEATELMESDIDILDDRLRGILTNTNLYYQMTFTFNPVSATHWIKRKYFDYKNDDIFTHHSTYLQNRFIDEAYYRRMQMRKEQDPEGYRVYGLGEWGETGGAILKNYVIHEFPTGFEYFDNMRLSQDFGFNHANAILRIGFKDGELYICNEIYVHEMDTSEIIRIANSKGLEKNLFMYCDSAEPDRIKMWKSAGYKAKGVKKGPGSIKAQIDYLKQLRIHVHPSCINTIKEIQQWKWKQDERTGLYLDEPVEFMDDAMAALRYSIDNKLKNNGISFLK
complement(5761..6453)             PHAGE_Clostr_CDMH1_NC_024144: putative phage terminase small subunit; QEW_RS16905; phage(gi640884858)     2.32e-135           MQDVKEKVKQDYLKGMKQKEISSKYDISLNTLKSWIKRYNWAGEKKKGAPINKRGAPFSNKNSVGYGAPKENKNAEKFGFFSKYLPEETQDLINEIKNKDKFDILWEQITIQYAAIIRAQKIMYVKDKEEMIKEVKKHESIENGERIEYEFQFAWDRQASFLNAQSRAMSELRSLIKQYDEMIHKDWNLATEEQKNRVEKLKCEVNNLNKDDIGDDELKISVDYGDNNDS
complement(6510..7160)             hypothetical protein; QEW_RS16910                                                    N/A                 MNSDWILKISSTIIGIITTFIILFNKNQKVIENYMDTYFNKVLVDYVNKYRNNDNIDAVEYIKNKYSLEDSYIPKYIFYLVDKNNSCLLHKILIVDYWDNHPSKRKNVFKVMCNISDIVEFLSVIVLFVLSIVYAYGILSLIYLFISESFKFKTIAIENIKTAIIFMGVSGVSFYLSAKAFKDINDDYSLKNKDITKVIEKREKDYDKNHAKYYIN
7310..7321                         attL                                                                                 N/A                 ATTTAATATATT
complement(7322..8011)             PHAGE_Sulfit_NYA_2014a_NC_027299: T5ord172-domain containing protein; QEW_RS16915; phage(gi848469691)     2.44e-15            MEFISDKLDFGGGKLRIEMEEGYVYILRNDSLKGLLKIGSTTFGAEKRAKQLSNNTAIPTPFIVVYEIYVRHYEEFEKTIHKKLASYRVNTKREFFAVSIDKVIELMNYEKEKSYYKADDKYSAIEILPKLVAKYGIHINPDIVSARIYQEIDRVYFEYTKYKYRADYLKDQIIIRIDLQFITNDMDENDKIFKETVSIETNVDRFIRLDDISMANCVGDIFIKEWLPI
complement(8224..8499)             heavy-metal-binding family protein; QEW_RS16920                                      N/A                 MIISTGDIKEEYGVIDAIFAIDSHKEGIFRGADPNSAFKGVKEQLKKKCEQLGGNAVINCQFEYRIAVADGFASKKQVVEIFAYGTAVKTL
complement(9025..9513)             PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS16925; phage(gi640884938)     1.27e-95            MDNNINKKELFKKVEGRLHHYRFLNAEIKNLELDIESRENEIFGCKAIGYGEKVSPTYAFNSSVEDEVIKKERDIARLKKLKKDKEIEKKKIENALTCLDIREEHFFKLFYDSRMKNSMVYISLEMNSDRKTCRCVRERLVYKVMDMLYPRIKENELPLFKN
complement(9606..10331)            PHAGE_Clostr_CDMH1_NC_024144: putative anti-repressor protein; QEW_RS16930; phage(gi640884937)     2.31e-168           MNDIMINENLRVVADDLVTVYETDTGEKIVFARELHSNLEVKRQFIDWIEDRIKQYGFKENEDYSVFHKNVKNSNGGRPSKEYVLKLDVAKELAMVQNNHKGREIRRYFIRLEKLLNRTLSNSQLSQINTIVNESLLKMDAKHNIQMEQLKKECSEYYRPTSKTKYDISSYIKERLGISKVNEEFELVKKRTLLVLGADKWEDIPKDVLLNSLNLIDESIRIIKSERKTNQISFFEKDNFC
complement(10345..10752)           PHAGE_Clostr_CDMH1_NC_024144: putative endodeoxyribonuclease protein; QEW_RS16935; phage(gi640884936)     2.64e-83            MKVNFTIDGEPIGKERPRFNLSTKRTYTPNKTRDYENLIKWLYQSKVKYHFTGYIKMTLRCYYSIAKSNSKKVKEQKRNNVLRPRKKPDIDNVVKIVADALNEIAYKDDTQIVEVIASKYYSDRPRIEIELEEIL
complement(10742..10861)           PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS16940; phage(gi640884935)     1.72e-09            MKRIRCSWCGKLFYLDEESKGVYCCKECRKKAKKVKNES
complement(10946..11269)           PHAGE_Phormi_MIS_PhV1B_NC_028998: hypothetical protein; QEW_RS16945; phage(gi100013)     7.72e-09            MLLVENKNDRSILAKESLERLGAKNVKIYNMDTGSNVIYSVENGKEHLTISNEKRFPNWNEIKYVRYKLMKPNKTIVQILPPKEEYINLHENCFHLWEIDDNTVPTK
11282..11293                       attL                                                                                 N/A                 AAATTTTATAAA
complement(11287..11460)           PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS16950; phage(gi640884932)     2.66e-18            MTNKEMCKSKNLDEREVYKKFSKEICGSCKNTKRDCKSEDCDTAHKIWLKKEAENYL
complement(11465..11704)           PHAGE_Clostr_phiCD6356_NC_015262: hypothetical protein; QEW_RS16955; phage(gi326536899)     1.61e-14            MKKYKIKFEEKVTLEHEVIVEIPEEVSINDICHCIEHKCQRIYDIADYIREFNGRQIDFVEDTSGETEMVVESFRNYKE
complement(11800..12048)           hypothetical protein; QEW_RS16960                                                    N/A                 MDKIYICSSQGLEEVEILEETKGRYRVGRNGQYLRAINKNRLDIERFDYVVSLSRDVAIKIWNDSLIKEIERLKGFLYTENI
complement(12048..12386)           PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS16965; phage(gi640884926)     2.92e-54            MSKVIQCDFCNKIFEKCNRECIELYKKNSGNELISTGKHMCPVCYEKFAGEKSEKKITNFEKVTRDKDSLMEFLFKCDAECSCCIYGNKNDCYYPTSCIEGCEKWLESEVEE
complement(12404..12592)           PHAGE_Bacill_Evoli_NC_024207: thymidylate synthase; QEW_RS16970; phage(gi643217471)     8.16e-15            MKKGDLDKRICDVEIEADNTQTYREFIVEAEEEIGTGSAYLDNMTDEELTVYLDFLDELLLK
complement(12594..12710)           PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS16975; phage(gi640884925)     9.63e-14            MNILAVVMFIIGSFIAGRVYEYRLNLKECENCDNNRGV
complement(12658..12802)           PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS23080; phage(gi640884922)     6.35e-12            IINKKKCSVNKAIDIAIKILSKYEYEGMLEKIYLLCLEVLLVG
complement(12815..13171)           PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS16980; phage(gi640884921)     2.98e-31            MAKVWIDAGELLEKTMDLEIMYENNLKKVRIKNKRENVIDLQINNNVQGRKGKKVECFNVITGETKVFDTTVEASKYVHFTDVHIANLARTGKVSKNGWKARYIQEVTDGISECRASN
complement(13183..13440)           PHAGE_Clostr_phiMMP02_NC_019421: hypothetical protein; QEW_RS16985; phage(gi414090426)     1.55e-39            MIIIRSQDRLDLLEVNRVEVDINEVIAIFKGSSDFRKIGEYENEERAIQVLNEIQKFIENGVKKDYIDSCRVRHNQEKVFEMPAE
complement(13427..13840)           PHAGE_Clostr_phiMMP02_NC_019421: YopX; QEW_RS16990; phage(gi414090425)               5.77e-58            MDLKFRCWSKLLNKFITGDFKIVVMKSEKTHLRDSAGYYFCNYDEVELMIYTNMNDCDGKEIYEGDIVLCRSIFFTEFAGEVKFKDGCFIAVNEMSGDCFRLSELEIIKVDGNIYEDLSKLNDIRKCDDGGIRNDNN
complement(13868..14053)           hypothetical protein; QEW_RS16995                                                    N/A                 MKGKGTIEYKIERTRIGKLKRDYREDTRYLNNIVKVLESKGFSVFVDNNDLTYYHVLYVSY
complement(14226..14633)           PHAGE_Clostr_phiCD119_NC_007917: hypothetical protein; QEW_RS17000; phage(gi90592689)     1.77e-91            MNTITLVGRLVADAELKYLPNSGTPKITFSIAVDRRFKDKNGNKITDFIQCEQLGKHVENLVQYLVKAKSVYAVGELNIYNYKDENGCWKSITKVNVNALELLSSKSDSNPKQEYIPPGLDPQGFQAIDDDDIPF
complement(14650..14823)           PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS17005; phage(gi640884916)     5.43e-27            MARIYAQKCGSLDIQDRLELLKLLGKAGYIVRIGKEKQNSKTTYTYFVEYIEEHEEK
complement(14885..15769)           PHAGE_Clostr_phiCD119_NC_007917: putative replication protein; QEW_RS17010; phage(gi90592688)     0.0                 MGIIRVSKDRDNPYVMLNKTCLEDVKLSWQAKGLHSYLISKPDHWKIYVNDLYKRSKNGRDATANILKELIENGYVTRKPCRDSNTNQMLGGYDYQVYEIPLENPQKLKSRKTDFPETGIPGNWISRKPENTELVSNDFKVSNDVTTIVINEQPQQDKTVYIKKYFEKYIGVITPNNFLELLGFLDDGMEVDVIIRAIDEAIGSGVKNYRYVKTILNNWIEANVKTSLELTEYQNEFERKKKSRQEKKQSNNKVVNATSKSKKTNFHNFDETFTKYSSDELDDIIKKSQKVKFK
complement(15784..16401)           PHAGE_Clostr_CDMH1_NC_024144: putative essential recombination protein; QEW_RS17015; phage(gi640884914)     3.60e-117           MESNNIYIKLMDVRVKFSKLNLKKSGENKFANFKYFELADFLPQATGLLEEAKLCPIVTFTNDYATLTLINGENPLEQITFTSPMRDLQLKGSNELQALGGIETYQTRYLYIQLLNITENDSFDAVSGKEVAKNNYNRNTQENKGTNNKTLTDKQLSRVYAIANSAGVGKDELKDKVFKRYGKEIRELTKEEYDSICNAYENKKQ
complement(16391..16669)           hypothetical protein; QEW_RS17020                                                    N/A                 MKTRNEIINDLEDRLFILKFTRFEGIEAEQALGSIAGLEYCIKRHKENWTIEQFKEDLEKQKSDGLYGDYIDGWEGVLKRNIKDMERGGIGI
complement(16747..16992)           PHAGE_Clostr_CDMH1_NC_024144: hypothetical protein; QEW_RS17025; phage(gi640884912)     1.81e-39            MKSRQELIKDIEKYRKAQYLIYLDIVQRAWVDRSLTTDEQDRIKHEAYAEYKRIEKDTEEAEELLMREEFETDRPLSVQIM
complement(16982..17164)           hypothetical protein; QEW_RS17030                                                    N/A                 MEVTRRFLEYKIQSLRKKIEDRESIGYKCKSDEKVLGAYEDILLMLNSEIESIGGVENEK
complement(17297..17626)           PHAGE_Clostr_CDMH1_NC_024144: putative DNA binding protein; QEW_RS17035; phage(gi640884910)     3.38e-55            MSVALQFIDTKDLVQELMGRDDTTDIIKMFLDREGIRRMDLVTVKEFCEYLKVSDSTARNMIREAMAQNHYTVIPIGNSYRIDLISFEEYVMKNAMKDRNVMKKRKGVI
complement(17643..17840)           PHAGE_Clostr_CDMH1_NC_024144: putative regulatory protein; QEW_RS17040; phage(gi640884909)     1.29e-25            MLIGDNISQILRKRNIKTYKLAKELDVDVSGLYKILRNENRNPTVNTLIKIADYLDITLDELVGR
17914..18267                       hypothetical protein; QEW_RS17045                                                    N/A                 MDKITYEILRLLNEKGSLNAYQFEILLNVKGVDNYQPRLKYLYDNKFISIAHAFKNSDEFEFRYDSYFEITLEGKAFIENEMKNNKKFKIQSIYIPILVAFITSLFTNLIALWLLKQ
complement(18409..19152)           PHAGE_Clostr_phiCDHM19_NC_028996: putative regulatory protein; QEW_RS17050; phage(gi971763920)     2.16e-67            MNSLQVIENENLIKVGVNEHQEQILSARDLHEFLEVGSRYNDWFNRMIGYGFIENEDFISLTQKKVTAQGNEIEYIDHVIKLDMAKEIAMIQRNEKGKQARKYFLQIEKDWNSPEKVMARALIVANKTIEQKNKELQEKSKFINQIASSKNSLLVREVAKIISKSKGIVIGEKRLYEKLREWDLVFKNSTEPKQVAIDRDYLETVEGVKETSTGTFTFKTTRVTGKGQEYILKRLLKEQEEQLSMLG
complement(19189..19398)           PHAGE_Clostr_phiCDHM19_NC_028996: hypothetical protein; QEW_RS17055; phage(gi971763916)     1.38e-42            MINNLARYRKFMEMSQKEMATVANMCLTSYYMKEKGAREFTQAEMFNIYNCIKERVPEITIEELFYRKS
19575..19970                       PHAGE_Clostr_phiCD119_NC_007917: RepR; putative repressor; QEW_RS17060; phage(gi90592681)     5.94e-81            MTNTFGNRLKNLRSEKRITGEEFGKILNVTKVAVSNWESDRRFPDQDTLKNIADYFDVSIDYLLCRSNTRNIINDGVNTTTTAFDIIENSDANKKVKELMKKIYSLNDDDRSAIEKIIDNAYIIKIKEEEN
20591..21025                       hypothetical protein; QEW_RS17065                                                    N/A                 MKILKKITSIIFVIIIITVVITGCSQQEQGKNNSEKKLNYNVLGEKTRHGGTYGDFKFVVIEMPKDFDPSNCKNLSKDFLNYYDENIDTVTVYVYEKGYKLESEQDMYKNSLYDITIEHRDENTCVYSVWDVKSEETTDEGSLD
complement(21297..22196)           PHAGE_Bacill_0305phi8_36_NC_009760: low copy number virion structural protein; QEW_RS17070; phage(gi156564190)     2.15e-06            VKLKKLLALGLAMSMFAAGPISANALDTIYTIQGKDKYETAALIADEQNYTTAILINADSTMADGLSASGLAGATNAPILLTKKNDIPNVTLKRVEKAKKVYIIGGESSIDKSTENILKNKNIEVKRLQGSDRIKTSYNVAKEINSINKVNKVILTNAFKGEPDAMSIASVAVRDKAPIVLTDGNSVPFNTTGTESYIIGGTSSMSDNLVNDTNSTRLGGVDRYDTNKKIVNKFYNGAKEFYIASGTDLVYALVGSTIAKYTPTVLVGDNSNKTILKGAEELTIIGDLSIDVIDQVVNMV
22339..22525                       PHAGE_Paenib_Harrison_NC_028746: toxin HicA; QEW_RS17075; phage(gi971482391)         7.94e-07            MKSYSSREILKILSADGWYEINCVGDHYFKLHVSYKSSKKGFATSNCEKYFTSWDYLA
22564..22965                       PHAGE_Clostr_phiCD119_NC_007917: hypothetical protein; QEW_RS17080; phage(gi90592680)     7.54e-92            MKKDIYVYPAILSYDEDGISVEFPDLPGCLTCGDTTEEALKMAKEALGLHLYGMEEDNDIIPNPTTIDKLNLEKNQIPTLIEIYMPIHRKAIENYSVKKTLTIPQWLNREAERNKVNFSQILQEALKNHLNIH
23000..23011                       attR                                                                                 N/A                 AAATTTTATAAA
23033..24151                       PHAGE_Clostr_CDMH1_NC_024144: putative integrase protein; QEW_RS17085; phage(gi640884898)     7.53e-162           MNIKSAFIRKRNEKFHVYVEYVEEETGKKKQKSYGSYEKKKDAEKHLIEIKSTINKNKFVAPSGVTLLERCYRYLEERKDDFSPYTLRNRKSVIRNHIEPFFGDIKLIDISPNILQTYVNKIYKKYSLNSAKNSISFLTALLHEAYRLREIQEDVTKFVITPNKEDVSETNFYTKEEAQMLLEKCLDTNLAIPIYFMLGLGLRFGEAVGVRWSDVQLNEGVINIKQTMVHVDGKVTFKSPKTTKSKRRLTAPTELIVLLKEEKLRQNKLKLQGILKNELDLICLNKKFQPWTQQKFFKPFKRLLESNNLRYIKLHELRHTNATLMLLSGTNIKTISERLGHTDIKITMNKYSHVLEEMDKEASDNLSKILFK
36148..36159                       attR                                                                                 N/A                 ATTTAATATATT
