gi|00000000|ref|NZ_AVLS01000056.1|  Clostridioides difficile P9 gcdP9.contig.55, whole genome shotgun 86343, gc%: 28.33%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
64897..64909                       attL                                                                                 N/A                 TTTAATTAAGAGG
65020..65934                       PHAGE_Thermu_P2345_NC_009803: XerD-like integrase; QQY_RS05485; phage(gi157265299)     5.62e-13            ClostridioidesdifficileP9MDIIEGYIDYIKDKKKLSENTVASYFMDIKKYMEYINQKSIKLVDIVENDIISYLIKLEKDNVSIATIARMISSIKSFHDYLFLNHICTNNPAKDIKKPKIKKENINILTEEEIERLLNFPKLTTPKLIRDKAIFEVLYGTGIKVSELVEMNIEDIDLDIDYIYCNSCCKNQRVIPLCDITKLYLEKYLKEARPKMAVEGEKSLFVSSLGQRFTRQGLWKVIKKYSNLANIDKNINPTMLRHSFAIHLLNEGANIAVVSKILGNVNLSSLQVYLNHIDKNVRREIKEKHPRNDVDVELQKAEAK
65976..67148                       phosphopentomutase; QQY_RS05490                                                      N/A                 ClostridioidesdifficileP9MSRVIWIVIDSVGIGALPDAEKFGDSKDVSTLGNIFKEYPDIQIPNMRNLGIGNIDGIDFFESIKEPIGCFGKCKEMSQGKDTTTGHWEMTGIIVDKPFKTFEHGFSKDIIEEFEKKTGRKVVGNKPASGTVIIDEYGEHQIKTGDVIVYTSADSVFQIAANEEVIPLEELYNMCKIAREIMMGDNAVARVIARPFIGKKKGEFVRTSNRRDYSLDPFEPTVLDNIKESGLDVLAVGKIEDIFNGKGITDAIHTKSNMDGVDETLNYMKQDNKGLIYSNLVDFDSKYGHRRDPEGYKKALEEFDSRLPEIMANMREDDILIINADHGNDPTYKGTDHTREYIPVMIYGNKIKKGFNLGVKDTFADIGATVADILNVKLPKHGSSFKEDLF
67195..68007                       purine-nucleoside phosphorylase; QQY_RS05495                                         N/A                 ClostridioidesdifficileP9MFEKIAQSSKFINSKSNIKPKIGLILGSGLGDLANDIEDPVTIKYSEIPNFPVSTVAGHAGQLVIGKLEGKEVIAMQGRFHYYEGYSQKEATFPVRVMKELGVEILIVTNAAGGVNKEFKAGDLMLIRDHINFSGSNPLVGKNDDRFGARFPDMSDAYSSKYVDVVKNCAKECNIDVKEGVYMFFSGPNYETPAEVRMAQILGADAVGMSTVPEVIVASHSNIGVIGISCITNMAAGILNQPLSHEEVIETTQKVKSEFMNLVKTTVKNL
68196..69536                       PHAGE_Geobac_E3_NC_029073: putative pyrimidine nucleoside phosphorylase; QQY_RS05500; phage(gi985758391)     4.92e-167           ClostridioidesdifficileP9MEISIMRMYDIIKKKRDNLELSKKEINYFIENYSKGDIPDYQASALLMSIYLNKMNKQETVHLTEAMMNSGDMINLSEIDGIKVDKHSTGGVGDKTTIALIPLVASCGAPVAKMSGRGLGHTGGTIDKLESIPGFSTEMEISKFIDSVNKSKIAVCGQSAKVAIADKKIYALRDVTATVDNISLISSSVMSKKLASGADAIVLDVKTGDGAFMKTLEESFELAKSMVDIGTGMNRDTIGIVTDMDEPLGFAVGNSLEVIEAIETLKGNGPKDLVELCEVLGAYMLVLSKVAHDFEDGVEKIRESIKSGTAIQKLKEFIENQGGNKDVVDDYSLFKKSKYKYPVKSTKSGYISKIKAEDVGVSAMILGAGRETKDDILDLSAGIILEKKVGDYVNEGEVLAYMYYNDEQKLSLAKGRFIDSYSIVDSKIEKNKLIYGIVTKEEIKKF
69749..70828                       endolytic transglycosylase MltG; QQY_RS05505                                         N/A                 ClostridioidesdifficileP9MNFKENRLKIAVLIIVILIILAGIFVFIQIGPYDKNNKKDVIIDVPSGASVGKISDILYENKLIKNELLFKLLVKVSNKAPSIKSGTYLLNQSYSNNDIISLLVSGKIYQDGIKVTIPEGATSKEIIAMLVSKNLGDKATFENLIKKPQEFYDKFPYLKEDGITSLEGFLYPETYYFNSKKQSEEDILSEMLKVFDSKYTDKFKKKQKELNMTLQEVMEMASIIEKEAVLDKDRPIIASVFYNRLKVGMPLQSDATIQYIFEERKKIVTYDDLKIDSPYNSYKNKGLPPTPISNPGIKSIEAALYPEKTDYLYFVAKIDGGNNYSTNYQDHLKYVKEYKEARDKQSKDTKATNKENTKK
71000..71674                       PHAGE_Mycoba_Send513_NC_042033: hypothetical protein; QQY_RS05510; phage(gi100064)     5.93e-15            ClostridioidesdifficileP9MSNIVNDLVEDYIRVTLKEKEGFLKDLEIYAEENSVPIIHKEVSDLLKVLLKVQKPKRILEVGCAIGYSSIFFATIIGKDADIITVERNEKMIEKAKENIKLAGFDNNITILEGDAEEKLSQVQGEFDLIFIDAAKGQYKLFFDLVIDKLKDGGLLVSDNILYKGMVAHDDFVVRRKKTIVKRMRNYLDYICNCDYLSTSLVPIGDGVALSYKESKRGDVDGIK
71661..72908                       U32 family peptidase; QQY_RS05515                                                    N/A                 ClostridioidesdifficileP9MELNKVELLAPAGDLERLKIAITYGADAVYIGGEIFGMRSAAKNFSKEDMAEGVAFAHERGKKVFVTVNIIPHNEDFLQLEDYLLELEEIGIDAVIIADPGVLSVIKKVIPNMEIHLSTQANTTNYLSANFWYEHGIKRVVVARELSFDEISEIRAKTPLDMDIEAFMHGAMCISYSGRCLISNYMTGRDANKGSCAQSCRWQYHLVEEKRPGEYFPIYEDERGTFFFNSKDLCMIEYIPELIKSGITSLKIEGRMKTAYYVATVVRAYRMAIDEFYRDPENWKFNPMWMEELKKGSHRHFTSGFYLNKPTTEDQNYQSASYVRNYDFIGIVRETEDEDGLIVVEQRNKMCVGDEIEVMGPYKETMFTKIEEMYNEEGEAIESAPHPRQIVKLKLSVKVGKDYMLRKVIEEKVEE
72980..74644                       penicillin-binding protein 2; QQY_RS05520                                            N/A                 ClostridioidesdifficileP9MSKKKTPFLKKVGKRSWCIFTIILIIYSVLIYRLVDIQVLKGDKYKQSVESQSVEKVELNSGRGIIYDRNNKKLTDTSKSQVLIVEKEKLNNNYKILELIKKATKMNDLDIYKAVQEQLTRPIIQIQTKNIDKSMKKELEKNGIMVEEKTMRYAKDGLLSHTIGYIKEDDKSGQSGIEKSMDSVLRNSNEKYISAFKAGDAGNEKSLNILKGSVKTVDNKDKDRHLKTTIDYNIQKKLEQILNKEENPTAAIISEASTGEILAMCSRPNFDQNDISKSLKGKNGEFENRVIKATYPPGSVFKMVVLFSALENGVIDENYTYNCTGKTKVGNTNEILRCNKRDGHGFQNLRQAFSNSCNPAFLDIAMKLGKEKILKSAEKLHLFEKVDIGLDEEKIREAPKNISIRNLAIGQENIEFTPLQINQMTQIIANNGTFKPLYLYKSLVDNNMNTIKTYKSSKKEELISPYVCTQVKEYMKSVSRTGTAKDLKDIEGGCGVKTGTAQSSLNKKAIDHGWITGFYPEERPKYVITVLVEGTQKGNKSATPIFKEICESIK
complement(74741..75013)           PHAGE_Bacill_phiNIT1_NC_021856: putative sigma factor; QQY_RS05525; phage(gi526118575)     7.43e-06            ClostridioidesdifficileP9ISLLDILGTEANYVLDEVELKVQVGKLYEQLNKILTPREREIVQLRYGLTPYGYKTQREIAQKLDISRSYVSRIEKKALKKLEKELVQES
complement(75048..76565)           PHAGE_Thermo_THSA_485A_NC_018264: Recombinase; QQY_RS05530; phage(gi397912662)       5.38e-179           ClostridioidesdifficileP9MSVAIYLRKSRADEEAEKQGEFETLSRHKSTLLKLAKEQNLDVIEIKEELVSGESIIHRPKMLELLKEVEENKYDAVLVMDLDRLGRGDMKDQGIILETFKESKTKIITPRKTYDLTDEFDEEYSEFEAFMARKELKLISRRMQRGRIKSVEEGNFIGTSAPFGYDAVTTGRKERILVPNKDADVVRTIFDLYINEDMGCSKISKYLNNLGIKTATGANWYNSAITNIIKNKVYCGYIQWQKKDYKKSKNPNKIKTVKLRPKDEWIEAKGKHEPLISEITWKKAQNILKKNGHVSYGNQIKNPLAGIVICKNCGRPLVYRPYADHDYIICYHPGCNKSSRFEFIEAAILKSLEDTVKKYQLKASDIDLDKNNKDSNIEFQKRVLKGLETELKELGKQKNKLYDLLERGIYDEDTFIERSNNISSRTEEIKDSIKTVKNRLSTVKKDNSKIIEDIKTVLSLYHDSDSLGKNKLLKSVIDKAVYYKYKEQKLDSFELMVHLKLHEDQ
complement(76690..77511)           hypothetical protein; QQY_RS05535                                                    N/A                 ClostridioidesdifficileP9MIISKKITAILVSFLIMISMVGCAPKESATEVAKKYLDSIEIKDYEVAYNLLSKDSKESVSLEKFEEYQDTLFKLQTLKDYKLGEENKVEKYKYSNKEYTNLVKIKETDTIKYITENKEDTANFDRYFIIEDNEYKLLWHKDFKRALSSNYVKIARSETEKDEDKDYNKAAIDIKKAIEIDDKNPLAYYTQSYIYIELQRYDEALKSIDKYLEYLDKNNEAYKIDASDAYNLRGVIFMSKSEFNKARESYNKALELNPDNEYAKTNLNDIKGL
77702..79128                       PHAGE_Clostr_phiCD211_NC_029048: Cell surface protein (fragment); QQY_RS05540; phage(gi981220894)     1.58e-51            ClostridioidesdifficileP9MKIKKLLTIGLSLSIFIASCPISANALDKIESIKGADKYETAGIIADKQNYTTAILINADSTMADGLSASGLAGAINAPILLTKKNNIPNATLKRLEKAKKVYIIGGENSIDKYTETVLKGKGIEIKRLQGSDRIKTSYNVAKEINSINKVNKVILTNAFKGEPEQVLHLQLEIKQLYLMEKVFHLIQLVKVMVVLHQMTKLRILIQLDVGQIDMILTKRINFIVEKNFIQVVLICMLLLVLLLLKIMLLCLIMIVIKVYKVQLNLLEIVIVYYSSVMQKIAILILEENIQKMLLMQKNYVRNFITNLIIQKMKIYFYIKILIFQEKSTMYLLTLNRVQRVMLDTVLKMIAKFIHMMLMVIKYVIQMIIKIKEVQRNKQNRHKNVLRDIKSVSITLIILEMIYIVVMSMLLKSIQKIVMVLLVGFLIKLGKFIIAA
79278..79430                       PHAGE_Clostr_phiCD38_2_NC_015568: hypothetical protein; QQY_RS05545; phage(gi333798140)     5.08e-11            ClostridioidesdifficileP9MDNFLFNVLASLTASVVVYLISKLFKKAKSHSRTKSDLRVEFKFIFKSKK
complement(80923..81147)           PHAGE_Lactob_Lj965_NC_005355: putative repressor; QQY_RS05550; phage(gi41179224)     1.96e-07            ClostridioidesdifficileP9MDVNQRIKYIRENMNSSQKELLEKTNINTSVMNRIESGERPTRDDGLIIFAKIFGLYTDYILGLSDTEKLNIGN
81405..81417                       attR                                                                                 N/A                 TTTAATTAAGAGG
81826..81981                       PHAGE_Clostr_CDMH1_NC_024144: putative anti-repressor protein; QQY_RS05555; phage(gi640884902)     1.23e-05            ClostridioidesdifficileP9MALEVKIEVKIIKDVVILNITHWKKETSLLTVKIARGQGDLSYVKYFTNES
