gi|00000000|ref|NC_000000|  Pseudomonas aeruginosa DK1 genome assembly Pseudomonas aeruginosa [asmbl_id: NC_000000].6212531, gc%: 66.57%

CDS_POSITION                       BLAST_HIT                                                                            EVALUE              prophage_PRO_SEQ
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#### region 1 ####
complement(682357..682671)         PHAGE_Burkho_AH2_NC_018283: excisionase; PADK1_RS03245; phage(gi399529070)           5.17e-08            MQPTIAPTTPIPRQETVELVYRIFGDVLVPLEQVRERWFRNLNKENFSKALACGRIALPVTTLDDSHKAMQFVALDHLAAYVDQRANQAGSARRAQPGADSIAS
complement(682771..683541)         PHAGE_Pseudo_phi2_NC_030931: hypothetical protein; PADK1_RS03250; phage(gi100019)     6.15e-94            MDKSTQIPPDSFAARLKQAMAMRNLKQETLAEAAGVSQNTIHKLTSGKAQSTRKLIEIAAALGVSPVWLQTGEGAPAARSAVSVADGSPLVLEPLHPWDSDTPLDEDEVELPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSMEPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDEEYSPEDMRSRQISMIGWVFWWSTVRHRRAPSLVR
683999..684199                     PHAGE_Pseudo_phiCTX_NC_003278: DksA-like zinc finger domain containing protein; PADK1_RS03255; phage(gi17313259)     3.01e-11            MADLADHANELVLARLDGLLAARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQDRHERR
684247..684606                     hypothetical protein; PADK1_RS03260                                                  N/A                 MIKAIDEMLKLWAEEMHAPGSNGGGYAGGNLIAMLIASKGEVVRGHRGSRVILDRVAEVDRLVNRLPEELKTVVVEHYLNRDSFPEQKYRHCGCSRNTFYLRLHVAHQGIQDGLLRRVA
684969..685412                     holin; PADK1_RS03265                                                                 N/A                 MKHRNPALAPGFLLPGKTFVRTCPALPAKEGPMGNEPQTLTEMPLWVLILLAALGGVSGEMWRADKAGLGGWALLRRLALRSGASIVCGVAVMLLALACGAALLFAAALGSLTAAAGAEIAVGLYERWAARRLGGCELPEEEPHERT
685428..686057                     PHAGE_Pseudo_JBD44_NC_030929: hypothetical protein; PADK1_RS03270; phage(gi100042)     8.94e-103           MKLTEQQLLRIFPNARLVAGVFVAALQRAMDEREIDTPARCAAFLAQVGHESSQLTRLVENLNYSAQGLAATWPSRYLGPDGQPNALALRLARNPQAIADNTYATRNGNGDEASGDGWRFRGRGLLQITGRANYRLVGEALGEPLEAEPWRLEQPVPAARSAAWWWAGHGLNELADRGEFAAITRRINGGLNGQAERLALWQRARAVLS
686054..686416                     PHAGE_Pseudo_JBD44_NC_030929: hypothetical protein; PADK1_RS03275; phage(gi100043)     1.02e-15            MSRLALLLPAVLLVLLAGALLGGGLVARHYRPQLEEALGQLTASRVASGQLEALLDEQQRALAAVRASAERRAKDAEQALGEARAQAAEQYAAAVRLLQEPDIGVDCQAAGAAIDRELGL
686413..686670                     PHAGE_Pseudo_JBD44_NC_030929: hypothetical protein; PADK1_RS03280; phage(gi100044)     1.36e-26            MTRLLLGLCLLFAGCAASPTTPRPVRVEVPLAVPCRVPDVRPPSWASATLQAGDSLQAKVRALLAERRQRQGYELELQAALRACR
686685..686972                     hypothetical protein; PADK1_RS03285                                                  N/A                 MDVDGRVSGAYCRVLIPRCRAGNRPVQRSHACTGVSPQGCHLQPQSPARVPGFLVCIRQRLGTWRLLADRVPRHGRPSWGRGQTTRLVRVFSCA
686986..687480                     PHAGE_Pseudo_D3_NC_002484: putative major tail protein; PADK1_RS03290; phage(gi9635608)     1.22e-70            MSILTQGTQIYALVPPVSGTGAATVLEIEGVTSFNPGGNPADQIEDPCLSDTSRKYKKGLRTPGQATLGINADPRLASHVRLFQLSEKDGETSVKWAIGWSDGIDVKPTVSTEGDDFVLPPARTWFTFEGYVSDFPFDFASNTLVATQATIQRSGAGKWTPKSA
687492..687839                     hypothetical protein; PADK1_RS03295                                                  N/A                 MNLNELRAAGGFIESALVRKEISWTRVPAGRKKAVSDTFQVFVRRNSFGAVERLFSAEGDLQSRNARYLAECIRLGETGEESLTYEQAYDLDPALGFLLLQAVGEVNRVEDAEKN
687869..688123                     PHAGE_Pseudo_PMG1_NC_016765: hypothetical protein; PADK1_RS03300; phage(gi374531663)     3.72e-16            MLNGVGGSTIAEAKERLSYAEYRAWVAYLNKRGSLHPGHRLELALARIAALLGHALGADADPDAFRPHMALQPLSLHQAMDQWA
688170..690008                     PHAGE_Phage_Gifsy_2_NC_010393: bacteriophage tail tape measure protein; minor tail protein; Lambda gpH homolog; PADK1_RS03305; phage(gi169257310)     2.48e-21            MATNTDGSLTLDLVLRSEGYRAGMDKVGRINDQKMRAMEARAEKAGKAIGKSLDSSALIASSVLDQALDMLGRTSRQAGQAKKPVQSAQDKVLAEWKTRQKELGEAWKSYREPLQDLSKLNEALLKNSSDKLDKALLNLSETGKLSLANVGKAAYADAARLASRQMTLMLLDGLFGWVASVGTEKPKVDDKAGKGQAKAGDDEKEQPSLQSQVFKQWLLQMNSVWGAYRAPLQDISGMTDELFRNASEKLEKSLFNFATSGKLSLSNFAKTVIDDVARIAARQLSMLALDGLFGWMNGKAGITEAQLASQKPYTSLLEKARADAGQAAAGAPAAQGAAPMPAAAMDVGAMVATASGQTGDGSKVSAGGASASAGKPVGSWVEQMDASWASLRDQAQDVSGMMDMLFTNAFTNMENALFTFATTGKLSFKDFADSVIQDMARIAARQATLQIIGGIVGAVSGFFGSGATAGSRISDYTGSDMANWVSKQRAGGMPGFARGGAFNDGIQSAPALFSMAGGRPALIGERGPEAIMPLSRGSDGVLGVRALGGGEGGNVFNFSTSVSLGGGREGAATASGDDGTGQQLAGMINDAARNVVAQELRPGGLVWRMVNG
690001..690342                     PHAGE_Pseudo_YMC11/02/R656_NC_028657: minor tail protein M; PADK1_RS03310; phage(gi966197864)     2.40e-21            MADLERFTWDISIDSAGQANQLVRQVQYGGGYSQALGDGLNNLSETWQVSRTGDLALIGPIRDFLKRHGGYRSFLWTLPTGEPVRVRAQGWQLRPRGNGVFTLNTTFQQVFNP
690350..691045                     PHAGE_Burkho_phi6442_NC_009235: gp18, phage minor tail protein L; PADK1_RS03315; phage(gi134288683)     2.57e-82            MTITADDQALEPGALVRLFDLDCTGFGGEMLRFHGHLQQGPIHWQGNAYQAWPLEARGFEQRGDGRASSPTLSVGNIDGSISALCLFFDGLVGARLTVRETYAHYLDAANFAEGNPQADPSQERLNIWFLEQKTAENSVQVTWELSAPPDFQGQQIPARQITSLCHWCITNEYRGQDCNYTGTAMFDADGNPVDDPALDRCGGRVSDCKLRFGADNPLSHGGFAGAGLVRM
691048..691818                     PHAGE_Burkho_KS9_NC_013055: tail component protein gp17; PADK1_RS03320; phage(gi255033748)     3.48e-65            MELSRSLQRAIAAHAAREHPRECCGLIVRGVRQRRYVACRNAAGSPSEHFVIDHQDWCAAEDQGEVLAIVHSHPDVPATPSMADRVSCELHGLPWVILSWPEGDVAHLAPEGYRAPLLGREFAHGVLDCWSLCRDWYRREAGLELPDYPRRDGWWETGESLYEQHYAAAGFRPVPLAGIRRGDMLVMQVGRALHPNHAGIYLGNDWRLDSEPVQALGGDGPFLLHHLYGRLSTRDVFGGPWIERTRLVLRHTQMPQ
691873..692475                     PHAGE_Edward_eiAU_183_NC_023555: putative tail assembly protein; PADK1_RS03325; phage(gi589889267)     4.24e-68            MSDTLSQGLTTIRLYGVLGKRFGRMHGRLLESGTVREAMSALKHTMEGFETFMREAESKGLTFAVFRGRTNLSGEQLDMRGREDIRIVPLVIGSKQAGLFQTILGAALIVVGGFTTFFSGGTSSFLVTVGVSMLAGGVMQMLSPQPKGLKGREAPENAPSYAFGGPVNTIAQGHPVGVLYGKRRIGGAVISAGIYAEDRL
692534..696202                     PHAGE_Entero_HK633_NC_019719: central tail fiber; PADK1_RS03330; phage(gi428782540)     0.0                 MNKTITGHKGGSKKPRQPVEMPDSVRSIARAKILLALGEGEFDGGVDGRSIYLDDTPLLAADGSVNFPGVTWEFRPGSVDQEHIAGVPAVENELAVGVELKSDAPWVRAVNNTQLSAVRLRLSWPAIQRQQENGDVVGYRIDYAIDIAVDGGAWQEALKASLDDKSTSRYERSHRVDLPEARSGWQVRVRRLTPNQNNNRIADTMRVEAITEVIDAKLRYPNTALLFVEFDASQFQSIPQISVEARGRRVRVPSNYDPQTRSYSGTWDGSFKSAWTSNPAWHWYDIVLHKRFGLGRRIDASMVDKWSLYRIAQYCDQSVPDGKGGQEPRFSCNLYLQSRAEAWTVLRDLAAIFRGMSYWSGAEMVAVSDMPEDEAYTFSPSNTVRGDDGSHFNYSSSRQRDRHTLALVNYDNPGNGYQSQPVAVNNDRAQRRYGISQLEITAIGCTSEGEAQRRGQWALLTEELEQDAVTFRTGMDGRGLAPGKIIAVADPVKSGKQIGGRLSAVDGRALTLDRDVEARPGDRLLVNLPNGKAEARSVQSVVGRVLSVTASYSETPRPQGQWALQSNSLTTQRFRIMSITRPEDNLFEITALQHNASKFDAIDNGARIELPPVTSIPPGVQAPPQNVRIKAFTKVDQGLAVTSLSASWDAAPNAVAYEAEWRKDSGNWVRVPRTSALGFDVPGIYAGRYLVRVRALNVMEVGSVYASSEETALEGKTTPPPALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAYPGNTHLVSPIPAGERLAFRGRLIDRSGNVGAWSNWVTGTSSSDASEYNQLITQEYVESALGQQFFSDIERMQVDIGGLQKQVGDLADILLYDPAKVYAKNDMVRQGQRLYQALKAVPAKTAPPNAAYWSDIGQSLETANGLAQQVASHTAEISELDGSLTAQASRLGVLQAATRDDADDGNGAMADALRGWKAVARAAQEETVRATENEAQATRTTLLEARTADAEGRIATVERVATSDRQATAQRLDQLSASIGGTAASLQSEQTARANADSVLAQRIDTVQASTDTNSAAIQTTSQAVTSLDGNVKAMYSVKLQAHANGQKYAAGWQLGFDSGTSVSTMAFQADRFIWFDSSSGTAVAPVSIVNGQMFIKSALIQDGTIDNAKIGDEIASNNYKPDRTGWRLDKNGRFEINGVVEGQGRVTITNNAIKVFDDKGRLRVHIGDLSA
697617..699011                     PHAGE_Pseudo_JBD93_NC_030918: sliding clamp; PADK1_RS03335; phage(gi100053)          1.80e-83            MPWYSTGTVSVVLNSDTVTGSGTAFSANARAGDAFRGPDGRWYEIGNVSSATVLTIKPAYQGATANGQAYSITPVQGYSKALADQLRDLNNLWGSTLAAVKPWATAATGPAALDDMGFGVTGKALAVSATPVAARSALGVPAVGDYGIGLTAGSSNTLSDANVVIPNGIYRVASTTAGTMLGSYIGQMLHAEQQGGYGVQLVMAAQTPPQMRMRVKNAGAWQAPVDILTSNDAANMPLVNLMPDSGRYAGTVNPLAITLAQPWANSTFSSGWNGASFMDGGKFTHDNSSNGGGGAELNARIQSLLQTMGRSAGGARYGVEFHVAVMTAGIGRANESVGLDGGSRFLAMTNNSRALFCSNQWATVVMWVRVESGSMHIATPAQTTVAVWINGAAKSPGHVLTPAEGWVHVRVATRAWGGYDNAFPYFHTVPGSAVAMACPAWFGGLADVGIHTAPIATINGASAA
699008..699292                     PHAGE_Pseudo_H70_NC_027384: hypothetical protein; PADK1_RS03340; phage(gi849255430)     2.61e-34            MMKRILLDGELFAENSLSTLAEVAILADIDVSRLSFHPDDLFAEANKKRQDAYRLESDPLRLEAEYDALKAGSEPDYRAWVAKIDEIKARYPLP

#### region 2 ####
complement(4561754..4562695)       PHAGE_Mycoba_Bactobuster_NC_031279: prohead core protein protease; PADK1_RS21620; phage(gi100061)     5.08e-09            MSATPYLLQPPLAVGFARLGFGSLSLESLRERYAAPSSGSRFIELDGFPLHYRDEGSRDKPVLVMIHGVVASLHTWDDWVKAMSPYFRIVRFDVPGFGLTGPGRDSRYSGERMVAILGQLLDFLKIDKASIAGNSLGGYIAWNFALAQPQRVERLVLIDPAGYQMRKVPWMIASAALPGSTLAMPLWMPRALIAQGIKEVYGEPGRIKPGVVDRYYDLSRRPGNRKGMMEIFRVLLKVNREELGTSGERIARIVAPTLLMWGERDRWISPKHVPLWQRDLPGIQVKTYPGVGHIPMEEIPEQTAADALRFLMA
complement(4562804..4563487)       TetR family transcriptional regulator; PADK1_RS21625                                 N/A                 MATAQWDGLQAVFEDLGGYGALARQAAQGEGPLVGHLQRTNIQLAAIPVFTRKGVAETTVNDLLEAARVSRRTFYKYFAGKLEVLESIYHSAVQLLLARFGGLRSEAGSDEDWLRAMVSLFFDYHLAVGPIIRMMQEEALHAGSPLAAHRQRAHLKIIELWAERLGAQGAAHDALTYRVLIWAMEAASLELLNASDPLELPRVKRVLGDLLVGTLCPRTQAPTRLQG
4563575..4564453                   hypothetical protein; PADK1_RS21630                                                  N/A                 MPTLSRRLLWPLAILLLVLGRPLAAADLYYLGQRIPDIQKPWDSHDYQVLIDALKKIEETQKNALPRRSGEFTGPLYLRMVSEENFRPQLNIYSPLEIRQNEAREVLFKLKELMRLYFDFRAAKQPYGAEALGLMSYSLREQSILFTLTVEFWMTLSQAEQRNPARLQGMQETKAAAAMLTGSALDYLGLTAQFERQDLVLYSAELAKEMPELFIHLPSPVRAQLLERIAAFAKDHPYPEVRDNMRDLQPVLQAIQADVEKQLAPGRNAKAPDKPLDLSPPPEGKPSGVKGL
4564795..4564867                   tRNA                                                                                 N/A                 AGAGCTGGCTAAGCATGTAGAACCGATAGCGGAGAGCTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCA
4564842..4564854                   attL                                                                                 N/A                 GGGTTCAAATCCC
4565056..4565283                   PHAGE_Pseudo_201phi2_1_NC_010821: virion structural protein; PADK1_RS21640; phage(gi189490604)     3.96e-11            MERYKNLGGNSGVVGYEIAEGSITVQFDDGMKYRYTILSAGPGAIAEMQHLARAGQGLNSYISRYVKKAFERKWR
complement(4565298..4566290)       PROPHAGE_Pseudo_PAO1: bacteriophage integrase; PADK1_RS21645; phage(gi15595925)      3.41e-145           MSITKLPDGRWLADVEPIKGKRFRKRFKTKGEAQRFEATVRQKCIENPVWSIKPKDRRRLSELVKLWYDLHGHSLRDAPRRLSKLLQLAARLGDPVATALDASSYASLRRKRLEEGISGKTLNNELGYVRAVFNELKDLKQIDYDNPLAGVKLLKLQERELSWLTTEQIGELLDSIRNGCDNPHTELVTLLCLATGARWSEAEKLPVQRLQGNVVTYAGTKSGKVRHVPIPLDLADRVRAHWRMHGPFTSCITSFRRALERTTIQLPQGQASHALRHTFASHFMMNGGNILTLQKILGHSTLTMTMRYAHLSPDHLQDALRFGPDILSQL
complement(4566290..4567582)       PHAGE_Pseudo_Pf1_NC_001331: hypothetical protein; PADK1_RS21650; phage(gi9625374)     0.0                 MKKISHQIRVSIESDGQVLESPKGRLFFDDTTAQFTDLSGVRILRCGVDTVRQLYNGKLRPEVMALFDLSVDVVEFAGYEWSKGRIGRDSGYQYRLQNAELGLILLIKNHNIKVDTLGSHLKIEVSPHALDGADPRILQGVLDDLAAAVLSHCETNQAAVHIALDVQGWKPPRDLVDRMHCRSRRVRQISGIERIEFDGNASVYGRGETYMFGSANGLQLSIYNKTLQARATDKLDYWESVWATLNGDPFGDGDPAYNPLETVWRLEFRFHHSIVQQFSEGSRMASGEVIGCRTYEGLCPHLQGLWNYACESFKLLSRTAVYDPFWSLISQDARVQVECDPLIERTEYRRYYKTAKGFSGRNCEMFLGQFISLIARERIPAKKAIESARKLEFWHVIEDHYLAKGWTRRDLERHIHKLMCDRYLRRGYAV
complement(4567812..4569095)       PHAGE_Pseudo_Pf1_NC_001331: putative assembly protein; PADK1_RS21655; phage(gi9625373)     0.0                 MSIKIHHGPNGSYKTSGAIQDDAVPALKDGRVIITNVRGFTLERAYQVFPDLPNTAEIINLDLESLEDLEKMRTWFQWAPRGAFLIFDETQLLFPKSWREKDLERFDYPGGPEAAHAADRPMGWLDAWTRHRHFNWDIVLTTPNISYIRDDIRMTCEMAYKHSNLAVIGIPGRYKEAQHDAQLNRPPADGTIIEYKRIRKQTFALYQSTATGKTQDTKAGKSLFRSPKLVLLLALLAGTIGFVSYMGPMRVIGAKPDPAASAPTPKPLPTATAPAAVAAPARPAANSFLPPGLVPDGPAAAPVDLNAHPFADRRISILAHAYMPSKGDIYMFALDDPAGRHLELTSWQLVGSGYAIKPRGECVAELLYGEWEGTVTCAGSSVRPVAVAGVPPLLNLPPSAAGAREPDKVPLTIVPDSEYASRPWRQK
complement(4569099..4569455)       PHAGE_Pseudo_Pf1_NC_001331: hypothetical protein; PADK1_RS21660; phage(gi9625372)     1.14e-65            MEWLSGFLDQIIAFFQWIWDFFAQGIYDFVRDGLVVATKASMYAALQTLILLIDVSYTAARELIDSLGVPQMIRSMYAALPGPIAAGLAFFGVPQALNIIMVAAATRFCMRFVPFIGR
complement(4569460..4570755)       PHAGE_Pseudo_Pf1_NC_001331: hypothetical protein; PADK1_RS21665; phage(gi9625371)     8.53e-42            MVRQVCAVLLVLCSWSAYAEPYYWQLNGPTAPDRFTSPSAACEVGLGMYKAQYPTVEMVINSREMRGSTNYVCTVFRYFNGNRIEPNFTISVMRKGTGCAEGSTYNAQTGVCETPPENNCIKGLTDLFSSPPSNIFVSGGRNFVNSSPPTGCKNGCQYLPTTSKTTSCYRYPGSDNQGFCNYVLMTDGSACAADSGNPGMTGPSLNDTPPTNPDEPPSDPNDPGCPPGYSWSGTTCVKTPTDPTEPGGDGGDGGDGGNTGGGDGGGDNGGGNDNGGGDGGTGGSDGSGGNGEGGGDGSGGGDGSGGGTGGGDGGNCDPAKQDCSPGPAGPGGELKEPKPGTWDDAIATWELKVEQAKKELKDKVRANVDQMKGAFDLNLAEGGGQLPCESVTIWGRSYSLCVADYADQLSNLRVALLLMAALIAAFILLRD
complement(4570942..4571190)       PHAGE_Pseudo_Pf1_NC_001331: major coat protein; PADK1_RS21670; phage(gi9625370)      6.06e-48            MKAMKQRIAKFSPVASFRNLCIAGSFTAATSLPAFAGVIDTSAVEAAITEGKGDMSSIGGYIVGALVILAVAGLVYSMLRKA
complement(4571203..4571454)       PHAGE_Pseudo_Pf1_NC_001331: hypothetical protein; PADK1_RS21675; phage(gi9625369)     7.33e-54            MSGVVAVQVCTAWTSTPEGFMACRELAWQQAYLIPPEAAGYVDILVNGGFSPEAFGIGAAGVLGSFVTGLLIGWVASLLRKAK
complement(4571467..4571559)       PHAGE_Pseudo_Pf1_NC_001331: hypothetical protein; PADK1_RS21680; phage(gi9625368)     1.82e-12            MLRYLSLFAVGLATGYAWGWIDGLAASLAV
complement(4571576..4572010)       PHAGE_Pseudo_Pf1_NC_001331: ssDNA binding protein; PADK1_RS21685; phage(gi9625367)     6.45e-99            MNMFATQGGVVELWVTKTDTYTSTKTGEIYASVQSIAPIPEGARGNAKGFEISEYNIEPTLLDAIVFEGQPVLCKFASVVRPTQDRFGRITNTQVLVDLLAVSGKPTAPTAQAPARPQAQAQAPRPAPQPQGQDKQDKSPDAKA
complement(4572213..4572545)       PHAGE_Pseudo_Pf1_NC_001331: hypothetical protein; PADK1_RS21690; phage(gi9625380)     2.79e-69            MLAKPLKALLLLCLIQAARTVADPVKGRAPGSSEQPHRSGERKHGRSAPLNASPLKQPPLGSVGQLLRPALPSPRRQERDDKGRALGVNRLESYSFRRKSKCSLLHFVAQ
complement(4572549..4572839)       PHAGE_Pseudo_Pf1_NC_001331: hypothetical protein; PADK1_RS21695; phage(gi9625379)     1.61e-62            MAASPYYLRQTHAPDCACSVCWSARQAIPLHSPSPCPDCRPPGLPYLEDGRWLCRPRSFCAKHDPSRRPPKYWHVVYDSGKPTPFVPVREAFQLEG
4576319..4576331                   attR                                                                                 N/A                 GGGTTCAAATCCC
